#                                                                            --- full sequence --- -------------- this domain -------------   hmm coord   ali coord   env coord
# target name        accession   tlen query name           accession   qlen   E-value  score  bias   #  of  c-Evalue  i-Evalue  score  bias  from    to  from    to  from    to  acc description of target
#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
5_nucleotid_C        PF02872.13   156 sp|O83142|5NTD_TREPA -            593   2.3e-28   99.1   0.0   1   1   1.1e-31     4e-28   98.3   0.0    23   155   406   551   379   552 0.84 5'-nucleotidase, C-terminal domain
Metallophos          PF00149.23   200 sp|O83142|5NTD_TREPA -            593   7.8e-19   67.8   0.2   1   1   2.9e-22   1.1e-18   67.4   0.2     2   199    35   250    34   251 0.95 Calcineurin-like phosphoesterase
PGA_cap              PF09587.5    250 sp|O83142|5NTD_TREPA -            593    0.0012   18.2   0.1   1   1   6.1e-07    0.0023   17.3   0.1    69   200   109   232    61   255 0.78 Bacterial capsule synthesis protein PGA_cap
YmdB                 PF13277.1    253 sp|O83142|5NTD_TREPA -            593     0.035   13.1   0.0   1   1   1.8e-05     0.066   12.2   0.0    11   114    66   181    62   256 0.62 YmdB-like protein
6PGD                 PF00393.14   291 sp|O83351|6PGD_TREPA -            488  3.2e-124  413.8   0.0   1   1  8.1e-128    4e-124  413.5   0.0     1   291   179   475   179   475 0.98 6-phosphogluconate dehydrogenase, C-terminal domain
NAD_binding_2        PF03446.10   163 sp|O83351|6PGD_TREPA -            488   1.5e-52  177.7   0.1   1   1   5.6e-56   2.8e-52  176.8   0.1     2   162     3   174     2   175 0.96 NAD binding domain of 6-phosphogluconate dehydrogenase
F420_oxidored        PF03807.12    96 sp|O83351|6PGD_TREPA -            488     0.091   13.1   1.1   1   1   3.2e-05      0.16   12.4   0.2     2    92     5    99     4   103 0.82 NADP oxidoreductase coenzyme F420-dependent
Glucosamine_iso      PF01182.15   199 sp|O83490|6PGL_TREPA -            241   2.5e-56  190.5   0.0   1   1   4.2e-60   3.1e-56  190.2   0.0     2   198     9   203     9   204 0.93 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
Pyridox_oxidase      PF01243.15    89 sp|O83490|6PGL_TREPA -            241      0.14   12.2   0.0   1   1   3.6e-05      0.26   11.3   0.0     7    69   152   215   146   224 0.84 Pyridoxamine 5'-phosphate oxidase
Acetate_kinase       PF00871.12   388 sp|O83489|ACKA_TREPA -            448  1.6e-136  454.9   0.0   1   1  1.3e-140  1.9e-136  454.6   0.0     2   386     3   392     2   394 0.98 Acetokinase family
ACPS                 PF01648.15   115 sp|O83800|ACPS_TREPA -            125   6.4e-18   64.6   0.0   1   1   4.9e-22   7.2e-18   64.4   0.0     1   115     4   118     4   118 0.93 4'-phosphopantetheinyl transferase superfamily
A_deaminase          PF00962.17   331 sp|O83085|ADDL_TREPA -            299   6.5e-75  252.0   0.7   1   1   4.4e-78   6.5e-74  248.7   0.6     2   292    10   277     9   289 0.98 Adenosine/AMP deaminase
F_bP_aldolase        PF01116.15   287 sp|O83668|ALF_TREPA  -            332     3e-99  331.7   0.0   1   1    5e-103   7.5e-99  330.4   0.0     2   287     9   332     8   332 0.95 Fructose-bisphosphate aldolase class-II
Aldolase             PF01081.14   196 sp|O83578|ALKH_TREPA -            210   1.1e-70  236.8   1.8   1   1   1.7e-74   1.3e-70  236.6   1.8     3   196     6   199     4   199 0.99 KDPG and KHG aldolase
DUF1341              PF07071.6    218 sp|O83578|ALKH_TREPA -            210    0.0054   16.2   0.0   1   1   1.8e-06     0.013   15.0   0.0   139   195   115   169   108   184 0.87 Protein of unknown function (DUF1341)
Ala_racemase_N       PF01168.15   218 sp|Q56346|ALR_TREPA  -            377     3e-55  187.1   1.6   1   1     5e-59   3.7e-55  186.8   1.6     1   218     8   232     8   232 0.94 Alanine racemase, N-terminal domain
Ala_racemase_C       PF00842.16   129 sp|Q56346|ALR_TREPA  -            377   1.8e-41  140.5   0.0   1   1   3.8e-45   2.8e-41  139.9   0.0     1   129   246   376   246   376 0.96 Alanine racemase, C-terminal domain
ApbE                 PF02424.10   254 sp|O83774|APBE_TREPA -            362   1.7e-82  276.5   0.0   1   1   1.4e-86   2.1e-82  276.2   0.0     1   254    67   335    67   335 0.96 ApbE family
Pribosyltran         PF00156.22   125 sp|O84001|APT_TREPA  -            190   2.5e-18   65.9   0.1   1   1   4.5e-22   3.3e-18   65.6   0.1    18   125    51   162    39   162 0.89 Phosphoribosyl transferase domain
UPRTase              PF14681.1    207 sp|O84001|APT_TREPA  -            190     0.034   13.3   0.0   1   1   6.4e-06     0.047   12.8   0.0   120   154   124   156    96   165 0.79 Uracil phosphoribosyltransferase
AsnA                 PF03590.10   244 sp|O83567|ASNA_TREPA -            330  1.3e-133  443.9   0.0   1   1  2.3e-137  1.7e-133  443.5   0.0     1   244     3   246     3   246 1.00 Aspartate-ammonia ligase
tRNA-synt_2          PF00152.15   335 sp|O83567|ASNA_TREPA -            330     0.022   13.5   0.0   2   2     2e-05      0.15   10.8   0.0   290   329   276   315   245   320 0.82 tRNA synthetases class II (D, K and N)
BioY                 PF02632.9    149 sp|O83256|BIOY_TREPA -            271     5e-39  133.3  16.9   1   1   1.6e-42   7.9e-39  132.6  16.9     1   147   104   261   104   263 0.97 BioY family
DUF3816              PF12822.2    172 sp|O83256|BIOY_TREPA -            271    0.0016   18.3  14.7   1   1   4.7e-07    0.0023   17.8  14.7     1   168    84   256    84   260 0.69 Protein of unknown function (DUF3816)
ECF-ribofla_trS      PF07155.7    169 sp|O83256|BIOY_TREPA -            271     0.031   14.0  11.3   1   1   2.2e-05      0.11   12.2  11.3     4   164    83   260    80   265 0.68 ECF-type riboflavin transporter, S component
Cpn10                PF00166.16    93 sp|O83977|CH10_TREPA -             88   1.9e-27   94.9   1.5   1   1   1.4e-31   2.1e-27   94.8   1.5     1    93     2    87     2    87 0.95 Chaperonin 10 Kd subunit
Cpn60_TCP1           PF00118.19   485 sp|P23033|CH60_TREPA -            544  1.1e-126  423.3  12.0   1   1  8.3e-131  1.2e-126  423.1  12.0     1   484    22   524    22   525 0.92 TCP-1/cpn60 chaperonin family
AAA_2                PF07724.9    171 sp|O83110|CLPB_TREPA -            878   3.3e-57  193.1   0.0   2   2   2.6e-57   1.2e-54  184.7   0.0     1   171   600   778   600   778 0.98 AAA domain (Cdc48 subfamily)
Clp_N                PF02861.15    53 sp|O83110|CLPB_TREPA -            878   6.9e-26   89.9   4.5   1   3   5.4e-13   2.6e-10   40.0   0.4     2    52    18    68    17    69 0.94 Clp amino terminal domain
Clp_N                PF02861.15    53 sp|O83110|CLPB_TREPA -            878   6.9e-26   89.9   4.5   2   3   3.1e-15   1.5e-12   47.2   0.2     1    53    94   145    94   145 0.96 Clp amino terminal domain
ClpB_D2-small        PF10431.4     81 sp|O83110|CLPB_TREPA -            878   1.7e-24   85.4   0.7   1   1   1.3e-26   6.1e-24   83.7   0.7     1    81   784   864   784   864 0.98 C-terminal, D2-small domain, of ClpB protein
AAA                  PF00004.24   132 sp|O83110|CLPB_TREPA -            878   1.2e-23   83.7   0.0   1   2   3.8e-16   1.8e-13   50.8   0.0     2   128   203   337   202   341 0.81 ATPase family associated with various cellular activities (AAA)
AAA                  PF00004.24   132 sp|O83110|CLPB_TREPA -            878   1.2e-23   83.7   0.0   2   2     1e-09   4.9e-07   30.0   0.0     2   118   606   732   605   740 0.82 ATPase family associated with various cellular activities (AAA)
AAA_5                PF07728.9    139 sp|O83110|CLPB_TREPA -            878   1.8e-19   69.8   0.0   1   2   1.6e-05    0.0078   15.9   0.0     3    75   203   281   201   286 0.69 AAA domain (dynein-related subfamily)
AAA_5                PF07728.9    139 sp|O83110|CLPB_TREPA -            878   1.8e-19   69.8   0.0   2   2   2.5e-16   1.2e-13   50.9   0.0     2   125   605   726   604   737 0.86 AAA domain (dynein-related subfamily)
AAA_16               PF13191.1    185 sp|O83110|CLPB_TREPA -            878   2.3e-15   57.0   5.7   1   3   1.8e-08   8.7e-06   25.8   0.0     2    49   180   224   179   236 0.90 AAA ATPase domain
AAA_16               PF13191.1    185 sp|O83110|CLPB_TREPA -            878   2.3e-15   57.0   5.7   3   3   7.2e-07   0.00035   20.6   0.0     1    63   573   641   573   686 0.85 AAA ATPase domain
AAA_22               PF13401.1    131 sp|O83110|CLPB_TREPA -            878   1.6e-13   50.9   0.7   1   2   5.3e-08   2.5e-05   24.4   0.0     6   101   201   289   196   310 0.87 AAA domain
AAA_22               PF13401.1    131 sp|O83110|CLPB_TREPA -            878   1.6e-13   50.9   0.7   2   2   4.2e-07    0.0002   21.4   0.0     5   114   603   700   599   721 0.79 AAA domain
Sigma54_activat      PF00158.21   168 sp|O83110|CLPB_TREPA -            878   5.1e-08   32.5   0.0   2   2   3.3e-07   0.00016   21.1   0.0    24   141   604   721   574   738 0.81 Sigma-54 interaction domain
AAA_17               PF13207.1    121 sp|O83110|CLPB_TREPA -            878   1.1e-06   29.4   1.6   2   2   4.1e-05      0.02   15.7   0.0     5    35   608   660   605   752 0.70 AAA domain
AAA_18               PF13238.1    129 sp|O83110|CLPB_TREPA -            878   3.1e-06   27.5   0.0   1   2   0.00012     0.057   13.7   0.0     3    74   204   273   203   284 0.81 AAA domain
AAA_18               PF13238.1    129 sp|O83110|CLPB_TREPA -            878   3.1e-06   27.5   0.0   2   2    0.0018      0.86    9.9   0.0     5    22   609   626   607   714 0.81 AAA domain
IstB_IS21            PF01695.12   178 sp|O83110|CLPB_TREPA -            878   2.6e-05   23.7   0.0   1   2   0.00033      0.16   11.3   0.0    45    73   197   225   176   267 0.80 IstB-like ATP binding protein
IstB_IS21            PF01695.12   178 sp|O83110|CLPB_TREPA -            878   2.6e-05   23.7   0.0   2   2    0.0012      0.58    9.5   0.0    50    69   605   624   599   650 0.82 IstB-like ATP binding protein
Arch_ATPase          PF01637.13   234 sp|O83110|CLPB_TREPA -            878   8.8e-05   22.3   5.6   1   3   0.00017     0.082   12.5   0.1     3    42   182   221   180   229 0.89 Archaeal ATPase
NACHT                PF05729.7    166 sp|O83110|CLPB_TREPA -            878   0.00036   20.2   0.0   1   2   0.00067      0.32   10.6   0.0     4    31   203   230   201   244 0.91 NACHT domain
Zeta_toxin           PF06414.7    201 sp|O83110|CLPB_TREPA -            878   0.00045   19.3   0.0   2   2   4.2e-05      0.02   13.9   0.0     6    58   590   655   585   694 0.77 Zeta toxin
AAA_19               PF13245.1     76 sp|O83110|CLPB_TREPA -            878   0.00063   19.4   0.1   1   2   0.00012      0.06   13.1   0.0     9    36   200   236   192   284 0.67 Part of AAA domain
MobB                 PF03205.9    140 sp|O83110|CLPB_TREPA -            878    0.0011   18.6   0.0   2   2   0.00037      0.18   11.5   0.0     4    31   606   633   604   640 0.87 Molybdopterin guanine dinucleotide synthesis protein B
AAA_10               PF12846.2    304 sp|O83110|CLPB_TREPA -            878    0.0011   18.4   0.1   2   2     0.001       0.5    9.7   0.0     3   155   604   834   603   874 0.57 AAA-like domain
AAA_24               PF13479.1    213 sp|O83110|CLPB_TREPA -            878    0.0075   15.8   0.0   2   2    0.0015      0.73    9.3   0.0     6    30   605   629   604   696 0.75 AAA domain
Miro                 PF08477.8    119 sp|O83110|CLPB_TREPA -            878    0.0077   16.7   0.2   1   1   0.00046      0.22   12.0   0.0     3    81   203   276   202   282 0.77 Miro-like protein
T2SE                 PF00437.15   272 sp|O83110|CLPB_TREPA -            878    0.0089   14.9   0.0   1   1    0.0001      0.05   12.5   0.0   128   203   602   678   478   686 0.73 Type II/IV secretion system protein
DNA_pol3_delta2      PF13177.1    162 sp|O83110|CLPB_TREPA -            878     0.081   12.5   0.0   1   1    0.0012      0.58    9.8   0.0    21   127   604   699   576   703 0.79 DNA polymerase III, delta subunit
CLP_protease         PF00574.18   182 sp|O83520|CLPP1_TREPA -            203   2.9e-78  261.7   0.0   1   1   2.4e-82   3.5e-78  261.4   0.0     2   181    18   197    17   198 0.99 Clp protease
CLP_protease         PF00574.18   182 sp|O84003|CLPP2_TREPA -            199     1e-60  204.5   0.0   1   1   8.5e-65   1.3e-60  204.2   0.0     9   181    20   192    13   193 0.97 Clp protease
AAA_2                PF07724.9    171 sp|O83521|CLPX_TREPA -            415   2.3e-44  151.3   0.0   1   1   9.5e-47   3.8e-44  150.6   0.0     2   170   109   306   108   307 0.93 AAA domain (Cdc48 subfamily)
ClpB_D2-small        PF10431.4     81 sp|O83521|CLPX_TREPA -            415   3.6e-17   62.0   0.4   1   1   2.3e-19   9.1e-17   60.7   0.4     1    69   313   385   313   398 0.93 C-terminal, D2-small domain, of ClpB protein
AAA                  PF00004.24   132 sp|O83521|CLPX_TREPA -            415   5.3e-17   62.2   0.1   1   1   2.5e-19     1e-16   61.3   0.1     1    98   113   218   113   247 0.82 ATPase family associated with various cellular activities (AAA)
zf-C4_ClpX           PF06689.8     41 sp|O83521|CLPX_TREPA -            415   2.7e-15   55.5   2.1   1   1   1.5e-17     6e-15   54.4   2.1     3    40    11    47     9    48 0.95 ClpX C4-type zinc finger
Mg_chelatase         PF01078.16   207 sp|O83521|CLPX_TREPA -            415   5.2e-08   32.3   0.4   1   2     1e-05    0.0042   16.2   0.2    22    44   110   132    73   148 0.87 Magnesium chelatase, subunit ChlI
Mg_chelatase         PF01078.16   207 sp|O83521|CLPX_TREPA -            415   5.2e-08   32.3   0.4   2   2   0.00013     0.053   12.6   0.0    97   122   166   191   145   195 0.90 Magnesium chelatase, subunit ChlI
RuvB_N               PF05496.7    234 sp|O83521|CLPX_TREPA -            415   1.8e-07   30.4   0.2   1   1   1.4e-09   5.6e-07   28.8   0.2    23   120    71   194    56   198 0.73 Holliday junction DNA helicase ruvB N-terminus
AAA_5                PF07728.9    139 sp|O83521|CLPX_TREPA -            415     1e-06   28.4   0.1   1   1   2.5e-08     1e-05   25.2   0.2     1    80   112   190   112   197 0.82 AAA domain (dynein-related subfamily)
Sigma54_activat      PF00158.21   168 sp|O83521|CLPX_TREPA -            415   1.3e-06   27.9   0.1   1   1   4.2e-08   1.7e-05   24.3   0.1    15   108   103   190    90   195 0.80 Sigma-54 interaction domain
MCM                  PF00493.18   331 sp|O83521|CLPX_TREPA -            415   6.5e-06   25.1   0.1   1   1   2.8e-08   1.1e-05   24.3   0.1    27   138    76   192    59   198 0.76 MCM2/3/5 family
Sigma54_activ_2      PF14532.1    138 sp|O83521|CLPX_TREPA -            415   4.9e-05   23.3   0.0   1   1   3.5e-07   0.00014   21.9   0.0    15    85   104   191   100   197 0.74 Sigma-54 interaction domain
AAA_14               PF13173.1    128 sp|O83521|CLPX_TREPA -            415   0.00012   22.0   0.0   1   1   6.6e-07   0.00027   20.8   0.0     3    75   111   189   109   215 0.70 AAA domain
T2SE                 PF00437.15   272 sp|O83521|CLPX_TREPA -            415   0.00017   20.6   0.0   1   1   8.5e-07   0.00034   19.5   0.0   122   153   104   135    64   145 0.81 Type II/IV secretion system protein
AAA_22               PF13401.1    131 sp|O83521|CLPX_TREPA -            415   0.00027   21.0   3.4   1   1   1.4e-06   0.00054   20.0   0.5     4   108   110   197   105   213 0.68 AAA domain
IstB_IS21            PF01695.12   178 sp|O83521|CLPX_TREPA -            415   0.00042   19.7   0.0   1   1   2.1e-06   0.00082   18.8   0.0    44    70   107   133    90   136 0.84 IstB-like ATP binding protein
AAA_16               PF13191.1    185 sp|O83521|CLPX_TREPA -            415   0.00085   19.3   2.2   1   2   1.4e-05    0.0055   16.6   0.2    24    47   110   133    89   148 0.86 AAA ATPase domain
AAA_17               PF13207.1    121 sp|O83521|CLPX_TREPA -            415     0.001   19.8   0.2   1   1     9e-06    0.0036   18.1   0.0     2    43   113   155   112   219 0.71 AAA domain
NACHT                PF05729.7    166 sp|O83521|CLPX_TREPA -            415    0.0025   17.5   1.0   1   2    0.0001     0.041   13.5   0.0     3    25   113   135   111   144 0.90 NACHT domain
PhoH                 PF02562.11   205 sp|O83521|CLPX_TREPA -            415     0.005   16.1   0.2   1   1   5.7e-05     0.023   13.9   0.0    16    40   107   131    99   141 0.85 PhoH-like protein
DEAD                 PF00270.24   169 sp|O83521|CLPX_TREPA -            415    0.0054   16.2   0.3   1   1   8.8e-05     0.035   13.5   0.0     9    31   104   127    99   136 0.84 DEAD/DEAH box helicase
AAA_18               PF13238.1    129 sp|O83521|CLPX_TREPA -            415    0.0058   16.9   1.1   1   1   3.1e-05     0.012   15.8   0.5     1    29   113   156   113   218 0.64 AAA domain
ABC_tran             PF00005.22   137 sp|O83521|CLPX_TREPA -            415    0.0064   16.8   0.4   1   1   3.7e-05     0.015   15.6   0.4    10    36   109   135   102   196 0.89 ABC transporter
AAA_24               PF13479.1    213 sp|O83521|CLPX_TREPA -            415    0.0075   15.8   0.1   1   1   3.3e-05     0.013   15.0   0.1     3    81   110   188   108   195 0.60 AAA domain
AAA_33               PF13671.1    143 sp|O83521|CLPX_TREPA -            415     0.011   15.5   0.0   1   1     6e-05     0.024   14.5   0.0     2    26   113   139   113   211 0.80 AAA domain
TIP49                PF06068.8    398 sp|O83521|CLPX_TREPA -            415     0.019   13.6   0.5   1   1   0.00013     0.051   12.2   0.1    52    86   112   144    68   155 0.86 TIP49 C-terminus
UPF0079              PF02367.12   123 sp|O83521|CLPX_TREPA -            415     0.023   14.3   0.0   1   1   0.00012     0.046   13.3   0.0    15    44   110   139   100   148 0.82 Uncharacterised P-loop hydrolase UPF0079
SRPRB                PF09439.5    181 sp|O83521|CLPX_TREPA -            415     0.024   13.8   0.0   1   1    0.0001     0.041   13.0   0.0     3    32   110   139   108   175 0.79 Signal recognition particle receptor beta subunit
AAA_25               PF13481.1    194 sp|O83521|CLPX_TREPA -            415     0.024   14.0   0.0   1   1   0.00011     0.046   13.1   0.0    26    97   103   171    87   207 0.69 AAA domain
Zeta_toxin           PF06414.7    201 sp|O83521|CLPX_TREPA -            415      0.03   13.4   0.2   1   1   0.00019     0.074   12.1   0.1    18    49   112   142   105   150 0.83 Zeta toxin
PduV-EutP            PF10662.4    143 sp|O83521|CLPX_TREPA -            415     0.035   13.6   0.1   1   1   0.00017     0.069   12.6   0.1     3    24   112   133   110   148 0.89 Ethanolamine utilisation - propanediol utilisation
ResIII               PF04851.10   184 sp|O83521|CLPX_TREPA -            415     0.039   13.8   0.9   1   1   0.00043      0.17   11.6   0.1    24    46   109   130    89   151 0.78 Type III restriction enzyme, res subunit
AAA_29               PF13555.1     62 sp|O83521|CLPX_TREPA -            415     0.048   13.2   0.0   1   1   0.00023     0.094   12.2   0.0    22    37   109   124    86   131 0.79 P-loop containing region of AAA domain
AAA_10               PF12846.2    304 sp|O83521|CLPX_TREPA -            415     0.084   12.3   0.4   1   1   0.00069      0.28   10.6   0.2     2    23   111   132   110   137 0.87 AAA-like domain
AAA_28               PF13521.1    163 sp|O83521|CLPX_TREPA -            415     0.087   12.7   0.2   1   1   0.00053      0.21   11.5   0.0     2    27   113   139   112   181 0.82 AAA domain
AAA_3                PF07726.6    131 sp|O83521|CLPX_TREPA -            415     0.094   12.3   0.0   1   1   0.00046      0.19   11.3   0.0     2    78   113   191   112   209 0.85 ATPase family associated with various cellular activities (AAA)
AAA_19               PF13245.1     76 sp|O83521|CLPX_TREPA -            415       0.1   12.3   0.1   1   1    0.0011      0.43   10.3   0.0    10    31   111   130   103   141 0.80 Part of AAA domain
RNA_helicase         PF00910.17   107 sp|O83521|CLPX_TREPA -            415      0.12   12.5   0.0   1   1    0.0006      0.24   11.5   0.0     1    23   113   135   113   157 0.84 RNA helicase
CTP_transf_2         PF01467.21   157 sp|O83307|COAD_TREPA -            159   1.3e-18   67.5   0.0   1   1   1.1e-22   1.6e-18   67.2   0.0     1   156     4   132     4   133 0.94 Cytidylyltransferase
CoaE                 PF01121.15   180 sp|O83319|COAE_TREPA -            211   1.8e-18   66.6   0.0   1   1     9e-22   2.2e-18   66.2   0.0     2   159     7   170     6   188 0.88 Dephospho-CoA kinase
AAA_17               PF13207.1    121 sp|O83319|COAE_TREPA -            211   3.3e-06   27.9   0.1   1   1   1.6e-09   4.1e-06   27.6   0.1     1    51     7    55     7   182 0.84 AAA domain
AAA_33               PF13671.1    143 sp|O83319|COAE_TREPA -            211      0.01   15.7   0.0   1   1   1.2e-05      0.03   14.1   0.0     2    78     8   123     7   178 0.58 AAA domain
ATP_bind_2           PF03668.10   284 sp|O83319|COAE_TREPA -            211     0.012   14.6   0.0   1   1   6.7e-06     0.017   14.2   0.0     4    31     8    35     5    69 0.85 P-loop ATPase protein family
AAA_18               PF13238.1    129 sp|O83319|COAE_TREPA -            211     0.043   14.1   0.0   1   1   3.3e-05     0.083   13.2   0.0     1    35     8    42     8    74 0.75 AAA domain
NUMOD4               PF07463.6     51 sp|O83319|COAE_TREPA -            211     0.048   13.5   0.0   1   1   4.2e-05       0.1   12.4   0.0     9    28   180   204   175   209 0.73 NUMOD4 motif
Pan_kinase           PF03309.9    206 sp|O83446|COAX_TREPA -            273   1.3e-45  155.4   0.2   1   1   1.1e-49   1.6e-45  155.1   0.2     1   205     1   210     1   211 0.93 Type III pantothenate kinase
Aminotran_5          PF00266.14   371 sp|O83623|CSD_TREPA  -            404  3.8e-131  437.2   0.5   1   1  1.7e-134  4.3e-131  437.0   0.5     2   371    21   390    20   390 1.00 Aminotransferase class-V
Aminotran_1_2        PF00155.16   363 sp|O83623|CSD_TREPA  -            404   4.5e-08   32.4   1.3   1   1   2.6e-11   6.5e-08   31.9   1.3    49   347    67   377    33   394 0.68 Aminotransferase class I and II
Beta_elim_lyase      PF01212.16   290 sp|O83623|CSD_TREPA  -            404   1.4e-05   24.3   0.5   1   1   7.6e-09   1.9e-05   23.9   0.5    47   211    83   253    39   346 0.69 Beta-eliminating lyase
DegT_DnrJ_EryC1      PF01041.12   363 sp|O83623|CSD_TREPA  -            404   2.6e-05   23.4   0.6   1   1   1.6e-08     4e-05   22.8   0.6    43   151    83   200    65   262 0.83 DegT/DnrJ/EryC1/StrS aminotransferase family
Cys_Met_Meta_PP      PF01053.15   386 sp|O83623|CSD_TREPA  -            404    0.0082   14.4   0.0   1   1   5.9e-06     0.015   13.6   0.0    91   202   105   221    91   227 0.82 Cys/Met metabolism PLP-dependent enzyme
CsrA                 PF02599.11    54 sp|O83663|CSRA_TREPA -             73   3.7e-24   84.2   2.2   1   1   2.9e-28   4.2e-24   84.0   2.2     1    54     1    54     1    54 0.99 Global regulator protein family
Bac_DNA_binding      PF00216.16    90 sp|O83278|DBH_TREPA  -            105   9.5e-24   83.2   0.0   1   1   1.4e-27   1.1e-23   83.0   0.0     2    89     7    94     6    95 0.96 Bacterial DNA-binding protein
DUF4496              PF14908.1    140 sp|O83278|DBH_TREPA  -            105     0.033   14.0   0.0   1   1   6.2e-06     0.046   13.6   0.0     2    60    27    93    26    99 0.87 Domain of unknown function (DUF4496)
Dala_Dala_lig_C      PF07478.8    203 sp|O83676|DDL_TREPA  -            396     3e-74  248.8   0.0   1   1   1.7e-77   3.7e-74  248.5   0.0     1   202   143   346   143   347 0.99 D-ala D-ala ligase C-terminus
Dala_Dala_lig_N      PF01820.16   117 sp|O83676|DDL_TREPA  -            396   3.2e-29  101.6   0.0   1   1   2.5e-32   5.4e-29  100.8   0.0     2   117     3   126     2   126 0.85 D-ala D-ala ligase N-terminus
ATP-grasp_4          PF13535.1    184 sp|O83676|DDL_TREPA  -            396   1.2e-14   54.4   0.1   1   1     1e-17   2.1e-14   53.6   0.1     2   176   134   316   133   321 0.79 ATP-grasp domain
ATP-grasp            PF02222.17   172 sp|O83676|DDL_TREPA  -            396     8e-09   35.0   0.0   1   1   7.4e-12   1.6e-08   34.1   0.0     3   158   146   316   143   320 0.74 ATP-grasp domain
CPSase_L_D2          PF02786.12   211 sp|O83676|DDL_TREPA  -            396   2.5e-08   33.4   0.0   1   1   4.2e-11   8.9e-08   31.6   0.0     1   178   136   317   136   319 0.75 Carbamoyl-phosphate synthase L chain, ATP binding domain
ATPgrasp_Ter         PF15632.1    330 sp|O83676|DDL_TREPA  -            396    0.0012   17.6   0.0   1   2   0.00021      0.45    9.2   0.0   103   167   132   200   124   227 0.79 ATP-grasp in the biosynthetic pathway with Ter operon
RimK                 PF08443.6    190 sp|O83676|DDL_TREPA  -            396    0.0043   16.5   0.0   1   1     6e-06     0.013   15.0   0.0    31   175   167   325   134   336 0.60 RimK-like ATP-grasp domain
Pep_deformylase      PF01327.16   157 sp|O83738|DEF_TREPA  -            162   1.6e-50  170.5   0.0   1   1   1.2e-54   1.8e-50  170.4   0.0     7   156     6   147     1   148 0.97 Polypeptide deformylase
DeoC                 PF01791.4    236 sp|O83288|DEOC_TREPA -            218   4.6e-59  199.5   5.2   1   1   6.9e-63   5.1e-59  199.4   5.2     2   235     3   214     2   215 0.97 DeoC/LacD family aldolase
NanE                 PF04131.9    192 sp|O83288|DEOC_TREPA -            218     0.003   16.5   0.4   1   1   5.6e-07    0.0042   16.0   0.4    77   171   115   205    72   216 0.69 Putative N-acetylmannosamine-6-phosphate epimerase
PNP_UDP_1            PF01048.15   234 sp|O83716|DEOD_TREPA -            233     1e-34  119.5   0.4   1   1   7.8e-39   1.2e-34  119.3   0.4     2   223    15   222    14   233 0.88 Phosphorylase superfamily
MMR_HSR1             PF01926.18   116 sp|P96128|DER_TREPA  -            460   1.7e-45  153.7   0.6   1   2   1.1e-23   3.6e-21   75.2   0.0     1   116    22   142    22   142 0.81 50S ribosome-binding GTPase
MMR_HSR1             PF01926.18   116 sp|P96128|DER_TREPA  -            460   1.7e-45  153.7   0.6   2   2   3.4e-24   1.2e-21   76.8   0.2     2   116   200   317   199   317 0.86 50S ribosome-binding GTPase
FeoB_N               PF02421.13   156 sp|P96128|DER_TREPA  -            460   2.2e-25   88.7   0.1   1   2   7.2e-12   2.5e-09   36.6   0.0     2    79    22   100    21   179 0.79 Ferrous iron transport protein B
FeoB_N               PF02421.13   156 sp|P96128|DER_TREPA  -            460   2.2e-25   88.7   0.1   2   2   6.2e-16   2.1e-13   49.8   0.1     2   152   199   361   198   365 0.84 Ferrous iron transport protein B
KH_dom-like          PF14714.1     80 sp|P96128|DER_TREPA  -            460   2.2e-24   85.2   0.1   1   1   2.2e-26   7.6e-24   83.4   0.1     1    80   375   454   375   454 0.98 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
GTP_EFTU             PF00009.22   188 sp|P96128|DER_TREPA  -            460   4.2e-20   71.9   0.2   1   2   4.3e-05     0.015   14.7   0.0     5   186    22   183    18   185 0.75 Elongation factor Tu GTP binding domain
GTP_EFTU             PF00009.22   188 sp|P96128|DER_TREPA  -            460   4.2e-20   71.9   0.2   2   2   1.3e-14   4.6e-12   45.7   0.2     3   184   197   367   195   391 0.74 Elongation factor Tu GTP binding domain
AIG1                 PF04548.11   212 sp|P96128|DER_TREPA  -            460   6.1e-18   64.6   0.3   1   2   1.9e-12   6.6e-10   38.4   0.0     2   116    22   138    21   141 0.90 AIG1 family
AIG1                 PF04548.11   212 sp|P96128|DER_TREPA  -            460   6.1e-18   64.6   0.3   2   2   3.7e-08   1.3e-05   24.4   0.1     2   108   199   305   198   311 0.88 AIG1 family
Miro                 PF08477.8    119 sp|P96128|DER_TREPA  -            460   1.8e-13   51.0   0.1   1   2   2.1e-06   0.00073   20.0   0.0     1    84    22   116    22   139 0.59 Miro-like protein
Miro                 PF08477.8    119 sp|P96128|DER_TREPA  -            460   1.8e-13   51.0   0.1   2   2   4.7e-09   1.6e-06   28.5   0.1     1   118   199   318   199   319 0.80 Miro-like protein
Dynamin_N            PF00350.18   168 sp|P96128|DER_TREPA  -            460   5.3e-13   49.1   2.1   1   4    0.0001     0.036   13.8   0.1     1    33    23    56    23    60 0.83 Dynamin family
Dynamin_N            PF00350.18   168 sp|P96128|DER_TREPA  -            460   5.3e-13   49.1   2.1   3   4   5.9e-05      0.02   14.7   0.0     1    36   200   236   200   239 0.80 Dynamin family
Dynamin_N            PF00350.18   168 sp|P96128|DER_TREPA  -            460   5.3e-13   49.1   2.1   4   4   0.00023     0.079   12.7   0.1   100   167   244   317   236   318 0.78 Dynamin family
Ras                  PF00071.17   162 sp|P96128|DER_TREPA  -            460   1.1e-11   44.4   0.4   1   2   0.00026     0.091   12.1   0.0     1    63    22    83    22   110 0.82 Ras family
Ras                  PF00071.17   162 sp|P96128|DER_TREPA  -            460   1.1e-11   44.4   0.4   2   2   7.1e-10   2.5e-07   30.2   0.1     2   157   200   366   199   371 0.74 Ras family
Arf                  PF00025.16   175 sp|P96128|DER_TREPA  -            460   4.7e-10   38.9   0.1   1   2    0.0011      0.37   10.0   0.0    16    55    22    61    13    80 0.84 ADP-ribosylation factor family
Arf                  PF00025.16   175 sp|P96128|DER_TREPA  -            460   4.7e-10   38.9   0.1   2   2   1.9e-08   6.4e-06   25.5   0.1    13   172   196   366   185   369 0.75 ADP-ribosylation factor family
DUF258               PF03193.11   161 sp|P96128|DER_TREPA  -            460   7.8e-09   34.9   0.0   1   2   5.9e-07    0.0002   20.5   0.0    38   124    23   105    17   108 0.90 Protein of unknown function, DUF258
DUF258               PF03193.11   161 sp|P96128|DER_TREPA  -            460   7.8e-09   34.9   0.0   2   2   0.00028     0.095   11.8   0.0    38   101   200   259   153   272 0.83 Protein of unknown function, DUF258
AAA_18               PF13238.1    129 sp|P96128|DER_TREPA  -            460     2e-07   31.4   0.0   1   2   9.6e-05     0.033   14.4   0.0     1    91    23   126    23   144 0.70 AAA domain
AAA_18               PF13238.1    129 sp|P96128|DER_TREPA  -            460     2e-07   31.4   0.0   2   2   7.7e-05     0.027   14.8   0.0     2    40   201   240   200   312 0.68 AAA domain
SRPRB                PF09439.5    181 sp|P96128|DER_TREPA  -            460   2.3e-07   30.2   0.2   1   2   3.4e-06    0.0012   18.1   0.0     4    99    21   129    18   140 0.62 Signal recognition particle receptor beta subunit
SRPRB                PF09439.5    181 sp|P96128|DER_TREPA  -            460   2.3e-07   30.2   0.2   2   2    0.0012      0.41    9.8   0.1     6    79   200   274   196   337 0.82 Signal recognition particle receptor beta subunit
Gtr1_RagA            PF04670.7    232 sp|P96128|DER_TREPA  -            460     3e-07   29.8   0.2   2   2   4.9e-07   0.00017   20.8   0.1     3   148   201   343   199   383 0.81 Gtr1/RagA G protein conserved region
AAA_17               PF13207.1    121 sp|P96128|DER_TREPA  -            460   8.1e-07   29.8   0.3   1   2    0.0021      0.72   10.6   0.0     1    19    22    40    22   135 0.83 AAA domain
AAA_17               PF13207.1    121 sp|P96128|DER_TREPA  -            460   8.1e-07   29.8   0.3   2   2   2.9e-05      0.01   16.6   0.1     2   101   200   291   199   326 0.55 AAA domain
MobB                 PF03205.9    140 sp|P96128|DER_TREPA  -            460   8.2e-07   28.8   0.1   1   2   0.00044      0.15   11.7   0.0     1    21    21    41    21    48 0.92 Molybdopterin guanine dinucleotide synthesis protein B
MobB                 PF03205.9    140 sp|P96128|DER_TREPA  -            460   8.2e-07   28.8   0.1   2   2   6.5e-05     0.022   14.4   0.1     2    25   199   222   198   244 0.86 Molybdopterin guanine dinucleotide synthesis protein B
GBP                  PF02263.14   260 sp|P96128|DER_TREPA  -            460   1.4e-05   24.2   0.1   2   2   6.4e-05     0.022   13.8   0.0    18    47   194   223   173   280 0.76 Guanylate-binding protein, N-terminal domain
ABC_tran             PF00005.22   137 sp|P96128|DER_TREPA  -            460   2.3e-05   24.7   0.0   1   2   0.00073      0.25   11.6   0.0    13    37    22    46    14   140 0.76 ABC transporter
ABC_tran             PF00005.22   137 sp|P96128|DER_TREPA  -            460   2.3e-05   24.7   0.0   2   2    0.0012       0.4   10.9   0.0    13    35   199   221   195   306 0.89 ABC transporter
RNA_helicase         PF00910.17   107 sp|P96128|DER_TREPA  -            460   3.6e-05   23.8   0.0   2   2   0.00018      0.06   13.5   0.0     2    25   201   224   200   279 0.65 RNA helicase
NTPase_1             PF03266.10   168 sp|P96128|DER_TREPA  -            460   3.7e-05   23.4   0.9   1   2   4.2e-05     0.014   15.0   0.1     1    73    22    93    22   112 0.85 NTPase
cobW                 PF02492.14   178 sp|P96128|DER_TREPA  -            460   4.7e-05   22.9   1.9   3   3   0.00031      0.11   11.9   0.1    87   171   247   339   231   346 0.64 CobW/HypB/UreG, nucleotide-binding domain
AAA_28               PF13521.1    163 sp|P96128|DER_TREPA  -            460   9.8e-05   22.3   0.2   2   2   0.00068      0.23   11.3   0.0     2    36   200   237   199   260 0.79 AAA domain
AAA_22               PF13401.1    131 sp|P96128|DER_TREPA  -            460    0.0001   22.4   0.0   2   2     0.001      0.36   10.9   0.0     7    28   200   221   199   314 0.89 AAA domain
Septin               PF00735.13   281 sp|P96128|DER_TREPA  -            460   0.00024   20.2   0.1   1   2    0.0028      0.97    8.3   0.0     7    47    23    63    19   109 0.67 Septin
Septin               PF00735.13   281 sp|P96128|DER_TREPA  -            460   0.00024   20.2   0.1   2   2    0.0014      0.48    9.3   0.0     7    59   200   252   195   320 0.82 Septin
FtsK_SpoIIIE         PF01580.13   205 sp|P96128|DER_TREPA  -            460   0.00037   20.0   0.0   2   2    0.0018      0.62    9.4   0.0    39    60   193   219   167   224 0.79 FtsK/SpoIIIE family
AAA_10               PF12846.2    304 sp|P96128|DER_TREPA  -            460   0.00042   19.8   0.0   2   2   0.00054      0.19   11.1   0.0     5    26   201   222   199   441 0.92 AAA-like domain
AAA_24               PF13479.1    213 sp|P96128|DER_TREPA  -            460    0.0033   17.0   0.0   2   2   0.00092      0.32   10.5   0.0     4    34   198   229   195   298 0.79 AAA domain
Arch_ATPase          PF01637.13   234 sp|P96128|DER_TREPA  -            460    0.0073   16.0   0.0   1   2    0.0012      0.43   10.2   0.0    23    47    23    47    17   123 0.87 Archaeal ATPase
AAA_15               PF13175.1    415 sp|P96128|DER_TREPA  -            460     0.078   12.0   0.0   2   2    0.0022      0.74    8.7   0.1    18   128   184   309   157   333 0.73 AAA ATPase domain
Churchill            PF06573.6    112 sp|P96128|DER_TREPA  -            460      0.11   12.5   0.1   1   1   0.00067      0.23   11.4   0.1    31   100   103   172    92   183 0.82 Churchill protein
MethyltransfD12      PF02086.10   260 sp|O33844|DMA_TREPA  -            303   4.5e-40  137.7   0.0   1   2   7.4e-28   5.5e-24   85.0   0.0     1   139    13   146    13   156 0.89 D12 class N6 adenine-specific DNA methyltransferase
MethyltransfD12      PF02086.10   260 sp|O33844|DMA_TREPA  -            303   4.5e-40  137.7   0.0   2   2   1.9e-17   1.4e-13   50.8   0.0   145   245   176   265   165   275 0.92 D12 class N6 adenine-specific DNA methyltransferase
Methyltransf_26      PF13659.1    117 sp|O33844|DMA_TREPA  -            303    0.0073   16.3   3.7   1   2   4.3e-06     0.032   14.2   2.5     4   116    35   253    33   254 0.54 Methyltransferase domain
Bac_DnaA             PF00308.13   219 sp|O83047|DNAA_TREPA -            464   3.3e-77  259.0   0.4   1   1   5.2e-80   5.1e-77  258.4   0.4     1   217   119   342   119   344 0.95 Bacterial dnaA  protein
Bac_DnaA_C           PF08299.6     70 sp|O83047|DNAA_TREPA -            464   1.2e-26   92.2   0.0   1   1   3.1e-29   3.1e-26   91.0   0.0     1    70   369   438   369   438 0.98 Bacterial dnaA protein helix-turn-helix
IstB_IS21            PF01695.12   178 sp|O83047|DNAA_TREPA -            464   8.6e-11   41.5   0.0   1   1   1.5e-13   1.4e-10   40.8   0.0    50   155   155   263   149   268 0.85 IstB-like ATP binding protein
AAA                  PF00004.24   132 sp|O83047|DNAA_TREPA -            464     1e-06   28.9   0.0   1   1   2.3e-09   2.2e-06   27.8   0.0     1   126   155   275   155   281 0.71 ATPase family associated with various cellular activities (AAA)
DnaA_N               PF11638.3     65 sp|O83047|DNAA_TREPA -            464   3.3e-06   26.5   2.0   1   1   3.3e-09   3.3e-06   26.5   2.0     3    61     9    66     7    70 0.89 DnaA N-terminal domain
AAA_14               PF13173.1    128 sp|O83047|DNAA_TREPA -            464     1e-05   25.4   0.2   1   1   2.3e-08   2.2e-05   24.3   0.2     3   115   153   274   151   287 0.81 AAA domain
AAA_22               PF13401.1    131 sp|O83047|DNAA_TREPA -            464   3.5e-05   23.9   1.3   1   1     2e-06     0.002   18.2   0.7     7   120   155   252   150   265 0.75 AAA domain
Arch_ATPase          PF01637.13   234 sp|O83047|DNAA_TREPA -            464   3.6e-05   23.5   2.9   1   1   1.4e-07   0.00014   21.6   2.8    19   125   151   256   145   378 0.79 Archaeal ATPase
RNA_helicase         PF00910.17   107 sp|O83047|DNAA_TREPA -            464   4.8e-05   23.4   0.0   1   2   4.5e-06    0.0045   17.1   0.0     2    74   156   242   155   256 0.75 RNA helicase
RuvB_N               PF05496.7    234 sp|O83047|DNAA_TREPA -            464   7.5e-05   21.8   0.0   1   1   2.8e-07   0.00028   20.0   0.0    19   123   121   240   103   251 0.70 Holliday junction DNA helicase ruvB N-terminus
AFG1_ATPase          PF03969.11   362 sp|O83047|DNAA_TREPA -            464    0.0089   14.8   0.1   1   1   1.6e-05     0.016   14.0   0.1    55   139   145   227    91   266 0.58 AFG1-like ATPase
DUF815               PF05673.8    250 sp|O83047|DNAA_TREPA -            464     0.017   14.0   0.0   1   1   3.4e-05     0.034   13.0   0.0    51   123   150   231   140   250 0.75 Protein of unknown function (DUF815)
AAA_25               PF13481.1    194 sp|O83047|DNAA_TREPA -            464     0.018   14.4   0.0   1   1     3e-05      0.03   13.7   0.0    36   122   155   232   150   251 0.78 AAA domain
AAA_16               PF13191.1    185 sp|O83047|DNAA_TREPA -            464     0.031   14.2   0.0   1   1   7.6e-05     0.076   13.0   0.0    19    70   147   202   138   257 0.80 AAA ATPase domain
DnaB_C               PF03796.10   259 sp|O83097|DNAB_TREPA -            438   2.2e-81  272.5   0.0   1   1   1.2e-84     3e-81  272.1   0.0     1   255   191   434   191   438 0.97 DnaB-like helicase C terminal domain
DnaB                 PF00772.16   103 sp|O83097|DNAB_TREPA -            438   4.7e-31  106.7   0.0   1   2   2.4e-33     6e-30  103.1   0.0     2   102    16   116    15   117 0.98 DnaB-like helicase N terminal domain
AAA_25               PF13481.1    194 sp|O83097|DNAB_TREPA -            438   4.7e-08   32.6   0.0   1   1   3.9e-11   9.6e-08   31.6   0.0    15   191   192   370   179   373 0.78 AAA domain
KaiC                 PF06745.8    227 sp|O83097|DNAB_TREPA -            438    0.0019   17.3   0.0   1   1   1.2e-06     0.003   16.7   0.0     2    77   193   269   192   358 0.84 KaiC
AAA_31               PF13614.1    157 sp|O83097|DNAB_TREPA -            438     0.042   13.7   0.0   1   1   4.4e-05      0.11   12.4   0.0     4    38   212   247   211   259 0.86 AAA domain
ELYS                 PF13934.1    226 sp|O83097|DNAB_TREPA -            438     0.049   13.3   0.0   1   1   3.2e-05      0.08   12.6   0.0    82   121    25    68    17   120 0.88 Nuclear pore complex assembly
zf-CHC2              PF01807.15    98 sp|O83505|DNAG_TREPA -            605   5.2e-37  125.3   0.0   1   1   1.3e-39   2.5e-36  123.1   0.0     2    96     5    99     4   101 0.97 CHC2 zinc finger
Toprim_N             PF08275.6    128 sp|O83505|DNAG_TREPA -            605   6.1e-33  113.4   0.0   1   1   5.5e-36     1e-32  112.7   0.0     1   127   126   249   126   250 0.96 DNA primase catalytic core, N-terminal domain
Toprim_4             PF13662.1     81 sp|O83505|DNAG_TREPA -            605   7.3e-16   57.9   0.0   1   1   8.1e-19   1.5e-15   56.9   0.0     2    80   258   333   257   334 0.89 Toprim domain
Toprim_2             PF13155.1     96 sp|O83505|DNAG_TREPA -            605   3.2e-10   40.2   0.0   1   1   3.4e-13   6.4e-10   39.2   0.0     1    95   260   344   260   345 0.88 Toprim-like
Toprim_3             PF13362.1     96 sp|O83505|DNAG_TREPA -            605   6.3e-07   29.5   0.0   1   1   8.9e-10   1.7e-06   28.2   0.0     2    96   259   351   258   351 0.86 Toprim domain
Toprim               PF01751.17   100 sp|O83505|DNAG_TREPA -            605   1.3e-05   25.0   0.0   1   1   2.4e-08   4.4e-05   23.3   0.0     2    95   259   330   258   335 0.83 Toprim domain
DnaB_bind            PF10410.4     59 sp|O83505|DNAG_TREPA -            605     0.015   15.2   0.0   1   1   2.8e-05     0.052   13.5   0.0     3    58   365   420   364   421 0.88 DnaB-helicase binding domain of primase
ACDC                 PF14733.1     92 sp|O83505|DNAG_TREPA -            605      0.17   12.0   0.0   1   1    0.0002      0.37   10.9   0.0    35    75   365   405   342   412 0.83 AP2-coincident C-terminal
HSP70                PF00012.15   602 sp|O83246|DNAK_TREPA -            635  2.3e-262  871.3   6.2   1   1    1e-265  2.6e-262  871.1   6.2     1   602     4   598     4   598 0.99 Hsp70 protein
MreB_Mbl             PF06723.8    327 sp|O83246|DNAK_TREPA -            635   1.3e-16   60.1   1.0   2   2   1.1e-17   2.8e-14   52.4   0.1    73   316   111   370    35   374 0.73 MreB/Mbl protein
FGGY_C               PF02782.11   198 sp|O83246|DNAK_TREPA -            635    0.0047   16.5   0.0   1   1   6.9e-06     0.017   14.7   0.0   145   195   320   374   296   376 0.76 FGGY family of carbohydrate kinases, C-terminal domain
FtsA                 PF14450.1    120 sp|O83246|DNAK_TREPA -            635    0.0053   16.5   7.9   1   2   0.00017      0.41   10.4   3.0     1    30     4    33     4   373 0.71 Cell division protein FtsA
AHS1                 PF02682.11   202 sp|O83246|DNAK_TREPA -            635     0.096   12.1   0.0   1   1   9.3e-05      0.23   10.8   0.0    32   123    78   172    56   178 0.82 Allophanate hydrolase subunit 1
DNA_ligase_aden      PF01653.13   315 sp|O83642|DNLJ_TREPA -            823   1.9e-47  161.7   0.0   1   1   1.3e-50   2.7e-47  161.2   0.0     2   314     3   299     2   300 0.89 NAD-dependent DNA ligase adenylation domain
BRCT                 PF00533.21    78 sp|O83642|DNLJ_TREPA -            823   4.7e-41  138.7   0.0   1   3   8.4e-10   1.8e-06   28.0   0.0     3    75   564   639   562   642 0.83 BRCA1 C Terminus (BRCT) domain
BRCT                 PF00533.21    78 sp|O83642|DNLJ_TREPA -            823   4.7e-41  138.7   0.0   2   3   4.3e-19   9.1e-16   57.7   0.0     2    78   655   729   654   729 0.94 BRCA1 C Terminus (BRCT) domain
BRCT                 PF00533.21    78 sp|O83642|DNLJ_TREPA -            823   4.7e-41  138.7   0.0   3   3   1.9e-16     4e-13   49.3   0.0     4    76   744   817   741   819 0.95 BRCA1 C Terminus (BRCT) domain
DNA_ligase_OB        PF03120.11    82 sp|O83642|DNLJ_TREPA -            823   3.8e-22   77.7   0.1   1   1   4.9e-25     1e-21   76.3   0.1     2    74   303   374   302   381 0.94 NAD-dependent DNA ligase OB-fold domain
PTCB-BRCT            PF12738.2     63 sp|O83642|DNLJ_TREPA -            823   1.2e-15   57.0   0.1   1   3   9.2e-05      0.19   11.5   0.0     3    54   572   622   571   626 0.81 twin BRCT domain
PTCB-BRCT            PF12738.2     63 sp|O83642|DNLJ_TREPA -            823   1.2e-15   57.0   0.1   2   3   4.5e-05     0.096   12.5   0.0     4    60   665   721   663   723 0.89 twin BRCT domain
PTCB-BRCT            PF12738.2     63 sp|O83642|DNLJ_TREPA -            823   1.2e-15   57.0   0.1   3   3   4.4e-10   9.3e-07   28.6   0.0     2    60   750   811   749   812 0.87 twin BRCT domain
HHH_2                PF12826.2     64 sp|O83642|DNLJ_TREPA -            823   1.1e-13   50.8   0.5   1   2   2.4e-07   0.00052   19.8   0.0     6    61   423   480   418   482 0.88 Helix-hairpin-helix motif
HHH_2                PF12826.2     64 sp|O83642|DNLJ_TREPA -            823   1.1e-13   50.8   0.5   2   2   6.3e-10   1.3e-06   28.1   0.1     2    53   485   537   484   541 0.92 Helix-hairpin-helix motif
HHH_5                PF14520.1     60 sp|O83642|DNLJ_TREPA -            823   3.6e-12   46.2   0.1   1   2     5e-07    0.0011   19.1   0.0     6    58   421   474   418   475 0.93 Helix-hairpin-helix domain
HHH_5                PF14520.1     60 sp|O83642|DNLJ_TREPA -            823   3.6e-12   46.2   0.1   2   2   1.7e-08   3.6e-05   23.8   0.0     9    53   490   534   482   540 0.90 Helix-hairpin-helix domain
RNA_pol_A_CTD        PF03118.10    67 sp|O83642|DNLJ_TREPA -            823      0.01   15.2   0.0   1   2     9e-05      0.19   11.1   0.0    31    65   440   474   437   476 0.90 Bacterial RNA polymerase, alpha chain C terminal domain
DNA_pol_A            PF00476.15   383 sp|P74933|DPO1_TREPA -            997  7.6e-121  403.3   1.1   1   1  5.6e-124  1.2e-120  402.6   1.1     6   382   623   995   619   996 0.98 DNA polymerase family A
5_3_exonuc_N         PF02739.11   169 sp|P74933|DPO1_TREPA -            997   1.5e-58  196.9   0.0   1   1   1.5e-61   3.1e-58  195.8   0.0     1   168     5   171     5   172 0.98 5'-3' exonuclease, N-terminal resolvase-like domain
DNA_pol_A_exo1       PF01612.15   176 sp|P74933|DPO1_TREPA -            997   4.7e-46  156.4   0.1   1   2   5.1e-08   0.00011   21.7   0.0     1    58   371   426   371   430 0.78 3'-5' exonuclease
DNA_pol_A_exo1       PF01612.15   176 sp|P74933|DPO1_TREPA -            997   4.7e-46  156.4   0.1   2   2   2.4e-42   5.1e-39  133.5   0.1    18   176   426   589   419   589 0.96 3'-5' exonuclease
5_3_exonuc           PF01367.15   101 sp|P74933|DPO1_TREPA -            997   4.7e-29  100.6   0.0   1   1   6.3e-32   1.3e-28   99.1   0.0     1    97   174   269   174   273 0.95 5'-3' exonuclease, C-terminal SAM fold
TSNR_N               PF04705.7    115 sp|P74933|DPO1_TREPA -            997     0.013   15.2   0.0   1   1   1.9e-05      0.04   13.6   0.0    15    65   796   846   786   862 0.88 Thiostrepton-resistance methylase, N terminus
RNase_T              PF00929.19   164 sp|P74933|DPO1_TREPA -            997     0.026   14.8   0.0   1   1   3.3e-05     0.071   13.4   0.0     1    99   393   502   393   541 0.77 Exonuclease
HHH_2                PF12826.2     64 sp|P74933|DPO1_TREPA -            997     0.043   13.7   0.0   1   1   0.00011      0.24   11.2   0.0     7    33   195   221   193   224 0.91 Helix-hairpin-helix motif
DNA_pol3_alpha       PF07733.7    426 sp|O83675|DPO3A_TREPA -           1170  3.7e-167  556.0   0.1   1   1  1.3e-170  4.8e-167  555.7   0.1     2   426   301   724   300   724 0.97 Bacterial DNA polymerase III alpha subunit
PHP                  PF02811.14   175 sp|O83675|DPO3A_TREPA -           1170   3.1e-47  160.6   0.0   1   2   5.1e-50   1.9e-46  158.0   0.1     1   172     7   188     7   191 0.98 PHP domain
HHH_6                PF14579.1     90 sp|O83675|DPO3A_TREPA -           1170   7.1e-19   67.6   0.0   1   1   7.6e-22   2.8e-18   65.7   0.0     1    89   797   885   797   886 0.95 Helix-hairpin-helix motif
tRNA_anti-codon      PF01336.20    75 sp|O83675|DPO3A_TREPA -           1170   0.00085   19.1   0.0   2   2     1e-06    0.0039   17.0   0.0     3    69   982  1051   980  1057 0.88 OB-fold nucleic acid binding domain
Dus                  PF01207.12   310 sp|O83945|DUS_TREPA  -            340   1.2e-72  244.3   0.3   1   1   4.9e-76   1.5e-72  244.1   0.3     2   293    23   323    22   337 0.94 Dihydrouridine synthase (Dus)
Oxidored_FMN         PF00724.15   341 sp|O83945|DUS_TREPA  -            340    0.0098   14.9   0.0   2   2   5.6e-05      0.17   10.8   0.0   203   334   132   256   129   262 0.78 NADH:flavin oxidoreductase / NADH oxidase family
PEP_mutase           PF13714.1    238 sp|O83945|DUS_TREPA  -            340     0.018   14.2   0.1   1   1   1.1e-05     0.033   13.4   0.1    55   105   132   184   120   216 0.80 Phosphoenolpyruvate phosphomutase
NadA                 PF02445.11   296 sp|O83945|DUS_TREPA  -            340     0.053   12.3   0.1   1   1   2.8e-05     0.082   11.7   0.1    29    92    54   122    44   143 0.72 Quinolinate synthetase A protein
DUF2599              PF10783.4     93 sp|O83945|DUS_TREPA  -            340     0.081   13.5   0.3   2   2   0.00013      0.38   11.4   0.1    29    71   272   314   263   323 0.90 Protein of unknown function (DUF2599)
dUTPase              PF00692.14   129 sp|O83855|DUT_TREPA  -            146   2.8e-18   65.6   0.0   1   1   2.2e-22   3.3e-18   65.3   0.0     6   129    15   144    11   144 0.85 dUTPase
DXP_redisom_C        PF08436.7     84 sp|O83610|DXR_TREPA  -            376     1e-36  124.6   0.1   1   1   6.8e-40   2.5e-36  123.4   0.1     1    84   132   215   132   215 0.99 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
DXPR_C               PF13288.1    121 sp|O83610|DXR_TREPA  -            376     2e-32  111.7   0.0   1   1   8.8e-36   3.3e-32  111.0   0.0     1   121   247   365   247   365 0.98 DXP reductoisomerase C-terminal domain
DXP_reductoisom      PF02670.11   129 sp|O83610|DXR_TREPA  -            376   3.6e-24   85.7   0.9   1   1   2.6e-26   9.6e-23   81.1   0.9     1   128     6   117     6   118 0.93 1-deoxy-D-xylulose 5-phosphate reductoisomerase
DXP_synthase_N       PF13292.1    270 sp|O83796|DXS_TREPA  -            630    5e-107  356.8   0.0   1   2  6.2e-110  1.5e-106  355.2   0.0     1   270     6   281     6   281 0.97 1-deoxy-D-xylulose-5-phosphate synthase
Transket_pyr         PF02779.19   178 sp|O83796|DXS_TREPA  -            630   1.4e-36  125.6   0.1   1   1   9.4e-40   2.3e-36  124.9   0.1     3   176   316   478   314   479 0.97 Transketolase, pyrimidine binding domain
Transketolase_C      PF02780.15   124 sp|O83796|DXS_TREPA  -            630   8.3e-28   96.8   0.0   2   2   3.5e-30   8.7e-27   93.5   0.0     6   124   498   614   493   614 0.95 Transketolase, C-terminal domain
Transketolase_N      PF00456.16   333 sp|O83796|DXS_TREPA  -            630   6.5e-10   38.3   0.0   2   3   5.9e-05      0.15   10.8   0.0   146   191   140   184   113   191 0.86 Transketolase, thiamine diphosphate binding domain
Transketolase_N      PF00456.16   333 sp|O83796|DXS_TREPA  -            630   6.5e-10   38.3   0.0   3   3   1.3e-08   3.3e-05   22.8   0.0   203   277   242   318   235   329 0.80 Transketolase, thiamine diphosphate binding domain
TPP_enzyme_C         PF02775.16   153 sp|O83796|DXS_TREPA  -            630   4.6e-05   23.0   0.0   1   3   1.2e-06     0.003   17.1   0.0    21    84   109   178   100   202 0.81 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
E1_dh                PF00676.15   300 sp|O83796|DXS_TREPA  -            630      0.13   10.9   0.0   1   1   8.7e-05      0.22   10.2   0.0   104   165   119   180    78   198 0.76 Dehydrogenase E1 component
GTP_EFTU             PF00009.22   188 sp|O83748|EFG1_TREPA -            695   5.8e-59  198.6   0.0   1   1   5.1e-62   8.4e-59  198.1   0.0     3   187     8   279     6   280 0.92 Elongation factor Tu GTP binding domain
EFG_IV               PF03764.13   120 sp|O83748|EFG1_TREPA -            695   7.6e-39  131.9   0.1   1   1   1.2e-41     2e-38  130.6   0.1     1   119   475   592   475   593 0.98 Elongation factor G, domain IV
EFG_II               PF14492.1     75 sp|O83748|EFG1_TREPA -            695   4.6e-32  109.6   0.0   1   1   5.7e-35   9.3e-32  108.7   0.0     1    74   400   473   400   474 0.99 Elongation Factor G, domain II
EFG_C                PF00679.19    89 sp|O83748|EFG1_TREPA -            695     9e-25   86.3   0.0   1   1   1.6e-27   2.6e-24   84.8   0.0     2    86   596   679   595   682 0.96 Elongation factor G C-terminus
GTP_EFTU_D2          PF03144.20    74 sp|O83748|EFG1_TREPA -            695   5.8e-14   51.9   0.0   1   1     9e-17   1.5e-13   50.6   0.0     1    74   321   387   321   387 0.95 Elongation factor Tu domain 2
AIG1                 PF04548.11   212 sp|O83748|EFG1_TREPA -            695    0.0012   18.0   0.0   1   1   1.2e-06     0.002   17.2   0.0    32    67    59    94    53   109 0.86 AIG1 family
MMR_HSR1             PF01926.18   116 sp|O83748|EFG1_TREPA -            695    0.0078   16.1   0.0   1   1   9.7e-06     0.016   15.1   0.0     9   103    18   123    10   137 0.54 50S ribosome-binding GTPase
BTD                  PF09270.5    158 sp|O83748|EFG1_TREPA -            695     0.055   13.2   0.0   1   1   6.7e-05      0.11   12.2   0.0    38    94    66   122    47   139 0.78 Beta-trefoil DNA-binding domain
Miro                 PF08477.8    119 sp|O83748|EFG1_TREPA -            695     0.079   13.4   0.0   1   1   0.00014      0.23   11.9   0.0    10   119    19   139    11   139 0.72 Miro-like protein
GTP_EFTU             PF00009.22   188 sp|O83464|EFG2_TREPA -            683   4.3e-64  215.4   0.1   1   1   3.6e-67   6.7e-64  214.7   0.1     2   187     5   276     4   277 0.96 Elongation factor Tu GTP binding domain
EFG_II               PF14492.1     75 sp|O83464|EFG2_TREPA -            683   4.1e-28   97.0   0.0   1   1   4.7e-31   8.7e-28   95.9   0.0     1    75   399   473   399   473 0.99 Elongation Factor G, domain II
EFG_C                PF00679.19    89 sp|O83464|EFG2_TREPA -            683   4.5e-23   80.9   0.0   1   1   4.9e-26     9e-23   79.9   0.0     2    81   604   682   603   683 0.98 Elongation factor G C-terminus
EFG_IV               PF03764.13   120 sp|O83464|EFG2_TREPA -            683   4.7e-14   51.9   0.1   1   1     5e-17   9.4e-14   51.0   0.1     1   119   474   600   474   601 0.96 Elongation factor G, domain IV
GTP_EFTU_D2          PF03144.20    74 sp|O83464|EFG2_TREPA -            683     5e-13   48.9   0.3   1   1   6.8e-16   1.3e-12   47.6   0.3     2    73   320   385   319   386 0.92 Elongation factor Tu domain 2
MMR_HSR1             PF01926.18   116 sp|O83464|EFG2_TREPA -            683    0.0075   16.2   0.0   1   1   9.5e-06     0.018   15.0   0.0     3   116    10   132     8   132 0.56 50S ribosome-binding GTPase
AIG1                 PF04548.11   212 sp|O83464|EFG2_TREPA -            683     0.074   12.1   0.1   1   1   8.2e-05      0.15   11.1   0.1    31    68    53    90    45   103 0.86 AIG1 family
Elong-fact-P_C       PF09285.6     56 sp|O83537|EFP_TREPA  -            187   1.6e-22   78.5   1.6   2   2   3.5e-26   1.7e-22   78.4   0.3     2    56   130   184   129   184 0.97 Elongation factor P, C-terminal
EFP                  PF01132.15    55 sp|O83537|EFP_TREPA  -            187   1.6e-17   62.9   0.0   1   1   7.5e-21   3.7e-17   61.7   0.0     2    55    68   121    67   121 0.96 Elongation factor P (EF-P) OB domain
EFP_N                PF08207.7     58 sp|O83537|EFP_TREPA  -            187   2.3e-17   62.5   0.1   1   1   9.9e-21   4.9e-17   61.5   0.1     3    58     5    60     3    60 0.96 Elongation factor P (EF-P) KOW-like domain
EF_TS                PF00889.14   221 sp|O83614|EFTS_TREPA -            290   4.8e-53  179.7   0.5   1   1   8.5e-57   6.3e-53  179.3   0.5     1   208    56   272    56   288 0.93 Elongation factor TS
UBA                  PF00627.26    37 sp|O83614|EFTS_TREPA -            290   2.2e-07   30.5   0.2   1   1     6e-11   4.4e-07   29.5   0.2     4    37     6    40     3    40 0.93 UBA/TS-N domain
GTP_EFTU             PF00009.22   188 sp|O83217|EFTU_TREPA -            395   1.1e-58  197.8   0.0   1   1   7.8e-62   1.4e-58  197.4   0.0     2   187    11   202    10   203 0.95 Elongation factor Tu GTP binding domain
GTP_EFTU_D3          PF03143.12    99 sp|O83217|EFTU_TREPA -            395   6.6e-32  109.6   0.1   1   1     1e-34   1.9e-31  108.1   0.0     1    98   299   393   299   394 0.98 Elongation factor Tu C-terminal domain
GTP_EFTU_D2          PF03144.20    74 sp|O83217|EFTU_TREPA -            395   6.4e-17   61.4   5.8   1   1   3.5e-20   6.4e-17   61.4   3.8     1    74   226   295   226   295 0.98 Elongation factor Tu domain 2
GTP_EFTU_D4          PF14578.1     81 sp|O83217|EFTU_TREPA -            395   0.00011   21.7   1.4   1   1   1.7e-07   0.00031   20.3   1.4     7    79   214   294   209   295 0.88 Elongation factor Tu domain 4
MMR_HSR1             PF01926.18   116 sp|O83217|EFTU_TREPA -            395   0.00018   21.4   0.0   1   1   1.9e-07   0.00035   20.5   0.0     2   113    15   133    14   137 0.66 50S ribosome-binding GTPase
cobW                 PF02492.14   178 sp|O83217|EFTU_TREPA -            395    0.0026   17.2   0.0   1   1   3.5e-06    0.0065   15.9   0.0   105   169    90   156    78   162 0.84 CobW/HypB/UreG, nucleotide-binding domain
Miro                 PF08477.8    119 sp|O83217|EFTU_TREPA -            395     0.084   13.3   0.0   1   1     7e-05      0.13   12.7   0.0     2    87    15   112    14   139 0.77 Miro-like protein
HhH-GPD              PF00730.20   108 sp|O83754|END3_TREPA -            211   2.2e-18   66.4   0.0   1   1   7.7e-22   3.8e-18   65.7   0.0     1   103    37   167    37   172 0.95 HhH-GPD superfamily base excision DNA repair protein
EndIII_4Fe-2S        PF10576.4     17 sp|O83754|END3_TREPA -            211   0.00047   20.2  12.7   1   1     2e-07     0.001   19.1  12.7     1    17   190   206   190   206 1.00 Iron-sulfur binding domain of endonuclease III
HHH                  PF00633.18    30 sp|O83754|END3_TREPA -            211   0.00055   19.4   0.0   1   1   2.8e-07    0.0014   18.2   0.0    12    29   113   130   102   131 0.82 Helix-hairpin-helix motif
Enolase_C            PF00113.17   296 sp|P74934|ENO_TREPA  -            432  2.7e-126  420.5   0.1   1   1  1.2e-129  3.6e-126  420.0   0.1     3   293   141   427   139   430 0.96 Enolase, C-terminal TIM barrel domain
Enolase_N            PF03952.11   132 sp|P74934|ENO_TREPA  -            432   4.6e-59  198.0   0.0   1   1     3e-62   8.8e-59  197.1   0.0     2   132     4   134     3   134 0.99 Enolase, N-terminal domain
MAAL_C               PF07476.6    249 sp|P74934|ENO_TREPA  -            432   2.4e-06   26.6   0.6   2   2   1.5e-09   4.3e-06   25.8   0.1   108   216   286   388   267   395 0.78 Methylaspartate ammonia-lyase C-terminus
MR_MLE_C             PF13378.1    111 sp|P74934|ENO_TREPA  -            432   0.00068   19.5   0.0   1   1   6.1e-07    0.0018   18.2   0.0    10    75   326   391   320   418 0.72 Enolase C-terminal domain-like
MR_MLE               PF01188.16    67 sp|P74934|ENO_TREPA  -            432    0.0081   16.6   0.0   1   1     8e-06     0.024   15.1   0.0     5    67   225   316   221   316 0.68 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
MMR_HSR1             PF01926.18   116 sp|O83552|ERA_TREPA  -            319   2.5e-20   72.5   0.0   1   1   4.7e-23   4.1e-20   71.8   0.0     3   116    14   128    13   128 0.84 50S ribosome-binding GTPase
Dynamin_N            PF00350.18   168 sp|O83552|ERA_TREPA  -            319     1e-12   48.1   0.3   1   2     6e-09   5.2e-06   26.3   0.1     3    36    15    48    14    51 0.88 Dynamin family
Dynamin_N            PF00350.18   168 sp|O83552|ERA_TREPA  -            319     1e-12   48.1   0.3   2   2   5.7e-07    0.0005   19.9   0.0    99   167    56   128    50   129 0.83 Dynamin family
KH_2                 PF07650.12    78 sp|O83552|ERA_TREPA  -            319   3.6e-08   32.8   0.0   1   1   7.2e-11   6.3e-08   32.0   0.0    25    78   254   308   230   308 0.82 KH domain
FeoB_N               PF02421.13   156 sp|O83552|ERA_TREPA  -            319   4.3e-07   29.3   0.0   1   1   9.6e-10   8.4e-07   28.3   0.0     5   121    15   135    12   148 0.75 Ferrous iron transport protein B
GTP_EFTU             PF00009.22   188 sp|O83552|ERA_TREPA  -            319   1.8e-05   24.2   0.0   1   1   3.1e-07   0.00027   20.4   0.0    67   187    55   195    11   196 0.71 Elongation factor Tu GTP binding domain
Miro                 PF08477.8    119 sp|O83552|ERA_TREPA  -            319   8.9e-05   22.9   0.0   1   1   1.6e-07   0.00014   22.3   0.0     3    86    14   102    13   130 0.75 Miro-like protein
PduV-EutP            PF10662.4    143 sp|O83552|ERA_TREPA  -            319   0.00022   20.7   0.0   1   2   0.00021      0.18   11.2   0.0     5    78    14   104    12   117 0.67 Ethanolamine utilisation - propanediol utilisation
AIG1                 PF04548.11   212 sp|O83552|ERA_TREPA  -            319    0.0021   17.1   0.0   1   1   3.8e-06    0.0033   16.5   0.0     4   107    14   113    13   140 0.77 AIG1 family
AAA_29               PF13555.1     62 sp|O83552|ERA_TREPA  -            319    0.0044   16.5   0.4   1   1   1.9e-05     0.016   14.6   0.1    22    43    10    30     5    32 0.86 P-loop containing region of AAA domain
AAA_17               PF13207.1    121 sp|O83552|ERA_TREPA  -            319    0.0084   16.9   0.1   1   1   7.3e-05     0.064   14.0   0.0     3    46    14    75    12   150 0.63 AAA domain
DUF258               PF03193.11   161 sp|O83552|ERA_TREPA  -            319     0.012   14.7   0.0   1   1   2.8e-05     0.025   13.7   0.0    36   101    11    72     7    86 0.81 Protein of unknown function, DUF258
Gtr1_RagA            PF04670.7    232 sp|O83552|ERA_TREPA  -            319     0.023   13.8   0.0   1   1     4e-05     0.035   13.2   0.0     3   129    14   137    13   155 0.77 Gtr1/RagA G protein conserved region
AAA_25               PF13481.1    194 sp|O83552|ERA_TREPA  -            319     0.037   13.4   0.0   1   1   7.9e-05     0.069   12.5   0.0    25    53     2    30     1    49 0.88 AAA domain
FtsK_SpoIIIE         PF01580.13   205 sp|O83552|ERA_TREPA  -            319     0.059   12.8   0.1   1   1   0.00013      0.11   11.9   0.1    42    57    14    29     6    32 0.90 FtsK/SpoIIIE family
AAA_21               PF13304.1    303 sp|O83552|ERA_TREPA  -            319     0.088   12.7   0.0   1   1   0.00013      0.12   12.3   0.0     2    23    13    34    12    85 0.73 AAA domain
AAA_23               PF13476.1    202 sp|O83552|ERA_TREPA  -            319      0.22   11.8   0.0   1   1   0.00037      0.33   11.2   0.0    19    40    10    31     7    81 0.92 AAA domain
Flagellin_N          PF00669.15   139 sp|P21990|FLAB1_TREPA -            286   3.7e-39  133.6   8.9   1   3     5e-43   3.7e-39  133.6   8.9     1   138     3   140     3   141 0.99 Bacterial flagellin N-terminal helical region
Flagellin_C          PF00700.16    86 sp|P21990|FLAB1_TREPA -            286     5e-22   77.8   5.7   3   3   6.7e-26     5e-22   77.8   5.7     1    86   200   285   200   285 0.98 Bacterial flagellin C-terminal helical region
Flagellin_N          PF00669.15   139 sp|P21991|FLAB2_TREPA -            286   1.8e-38  131.4   8.4   1   3   2.4e-42   1.8e-38  131.4   8.4     1   138     3   140     3   141 0.99 Bacterial flagellin N-terminal helical region
Flagellin_C          PF00700.16    86 sp|P21991|FLAB2_TREPA -            286   1.3e-29  102.1   6.3   2   2   1.8e-33   1.3e-29  102.1   6.3     1    86   200   285   200   285 0.98 Bacterial flagellin C-terminal helical region
Flagellin_N          PF00669.15   139 sp|P21992|FLAB3_TREPA -            285   2.3e-38  131.1   8.8   1   2   3.1e-42   2.3e-38  131.1   8.8     1   138     3   140     3   141 0.99 Bacterial flagellin N-terminal helical region
Flagellin_C          PF00700.16    86 sp|P21992|FLAB3_TREPA -            285     3e-24   84.9  12.4   2   2   8.3e-28   6.1e-24   83.9   6.8     1    86   199   284   199   284 0.98 Bacterial flagellin C-terminal helical region
Flavodoxin_1         PF00258.20   143 sp|O83895|FLAV_TREPA -            146   1.7e-18   67.0   0.8   1   1   3.8e-22   1.9e-18   66.8   0.8     1   141     6   138     6   140 0.90 Flavodoxin
Flavodoxin_5         PF12724.2    143 sp|O83895|FLAV_TREPA -            146    0.0059   16.6   0.0   1   1   1.4e-06    0.0069   16.3   0.0     2    83     6    90     5   126 0.81 Flavodoxin domain
Flavodoxin_3         PF12641.2    160 sp|O83895|FLAV_TREPA -            146     0.013   14.9   0.0   1   1   3.7e-06     0.019   14.4   0.0     1    92     5   110     5   121 0.71 Flavodoxin domain
Flg_bbr_C            PF06429.8     74 sp|O07884|FLGE_TREPA -            463   6.7e-18   64.3   3.2   2   2   2.7e-21   1.3e-17   63.4   1.3     2    74   384   461   383   461 0.84 Flagellar basal body rod FlgEFG protein C-terminal
FlaE                 PF07559.9    130 sp|O07884|FLGE_TREPA -            463   2.6e-14   54.0  10.3   1   1   5.5e-18   2.7e-14   53.9   8.5     2   130   192   343   191   343 0.83 Flagellar basal body protein FlaE
Flg_bb_rod           PF00460.15    31 sp|O07884|FLGE_TREPA -            463   2.4e-12   46.2   0.3   1   2   4.9e-16   2.4e-12   46.2   0.3     4    31     8    35     5    35 0.96 Flagella basal body rod protein
FHIPEP               PF00771.15   658 sp|Q56338|FLHA_TREPA -            707    7e-227  754.9  10.3   1   1  5.5e-231  8.2e-227  754.6  10.3     2   658    22   687    21   687 0.97 FHIPEP family
Bac_export_2         PF01312.14   343 sp|O83710|FLHB_TREPA -            376  9.1e-122  406.2   1.4   1   1  7.2e-126  1.1e-121  405.9   1.4     2   336    24   359    23   365 0.98 FlhB HrpN YscU SpaS Family
SRP54                PF00448.17   196 sp|Q56339|FLHF_TREPA -            437   1.8e-33  115.6   0.0   1   1   6.7e-36   3.1e-33  114.8   0.0     3   194   219   415   217   417 0.86 SRP54-type protein, GTPase domain
MMR_HSR1             PF01926.18   116 sp|Q56339|FLHF_TREPA -            437   0.00022   21.1   0.0   1   1   1.3e-06   0.00062   19.7   0.0     2   100   220   353   219   396 0.64 50S ribosome-binding GTPase
AAA_22               PF13401.1    131 sp|Q56339|FLHF_TREPA -            437   0.00022   21.3   0.1   1   1   4.6e-06    0.0021   18.1   0.0     5    46   218   261   214   327 0.74 AAA domain
AAA_17               PF13207.1    121 sp|Q56339|FLHF_TREPA -            437   0.00045   21.0   0.3   1   1   6.6e-06     0.003   18.3   0.1     2    24   220   250   219   356 0.79 AAA domain
T2SE                 PF00437.15   272 sp|Q56339|FLHF_TREPA -            437    0.0011   17.8   0.3   1   1   4.8e-06    0.0022   16.9   0.2    37   148   117   237    87   249 0.69 Type II/IV secretion system protein
AAA_16               PF13191.1    185 sp|Q56339|FLHF_TREPA -            437    0.0025   17.8   0.3   2   2   0.00012     0.054   13.4   0.0    24    45   217   238   199   250 0.88 AAA ATPase domain
AAA_25               PF13481.1    194 sp|Q56339|FLHF_TREPA -            437    0.0027   17.1   0.3   1   1   3.9e-05     0.018   14.4   0.0    26    81   210   262   185   337 0.64 AAA domain
SRP54_N              PF02881.14    75 sp|Q56339|FLHF_TREPA -            437    0.0031   17.5   1.8   1   1   8.3e-06    0.0039   17.2   0.3     1    71   129   198   129   202 0.88 SRP54-type protein, helical bundle domain
ResIII               PF04851.10   184 sp|Q56339|FLHF_TREPA -            437    0.0034   17.2   0.1   1   1     3e-05     0.014   15.2   0.0     9    47   196   239   188   258 0.80 Type III restriction enzyme, res subunit
AAA_19               PF13245.1     76 sp|Q56339|FLHF_TREPA -            437    0.0036   17.0   0.5   1   1   2.1e-05    0.0097   15.6   0.5    12    37   220   244   213   261 0.78 Part of AAA domain
AAA_28               PF13521.1    163 sp|Q56339|FLHF_TREPA -            437    0.0054   16.6   0.0   1   1   2.5e-05     0.011   15.6   0.0     1    33   219   249   219   315 0.77 AAA domain
AAA_14               PF13173.1    128 sp|Q56339|FLHF_TREPA -            437    0.0055   16.6   0.7   1   2   0.00027      0.12   12.2   0.0     3    27   218   242   216   275 0.85 AAA domain
AAA_5                PF07728.9    139 sp|Q56339|FLHF_TREPA -            437     0.014   15.1   0.4   1   1   0.00017     0.077   12.7   0.0     1    23   219   241   219   256 0.85 AAA domain (dynein-related subfamily)
IstB_IS21            PF01695.12   178 sp|Q56339|FLHF_TREPA -            437     0.017   14.5   0.0   1   1   0.00011     0.051   12.9   0.0    47    61   217   231   174   240 0.86 IstB-like ATP binding protein
MobB                 PF03205.9    140 sp|Q56339|FLHF_TREPA -            437     0.018   14.7   0.0   1   1   0.00015     0.071   12.8   0.0     3    22   220   239   218   269 0.84 Molybdopterin guanine dinucleotide synthesis protein B
AAA                  PF00004.24   132 sp|Q56339|FLHF_TREPA -            437     0.019   15.1   1.2   1   1   0.00052      0.24   11.5   0.0     1    20   220   239   220   309 0.81 ATPase family associated with various cellular activities (AAA)
AAA_18               PF13238.1    129 sp|Q56339|FLHF_TREPA -            437     0.019   15.2   0.1   1   1   0.00014     0.064   13.5   0.1     1    19   220   238   220   265 0.91 AAA domain
AAA_24               PF13479.1    213 sp|Q56339|FLHF_TREPA -            437      0.02   14.4   0.1   1   1   0.00018     0.081   12.4   0.0     5    76   219   309   216   313 0.61 AAA domain
VirE                 PF05272.6    198 sp|Q56339|FLHF_TREPA -            437     0.022   14.2   0.0   1   1   0.00011     0.051   13.0   0.0    34    80   199   245   172   258 0.79 Virulence-associated protein E
AAA_23               PF13476.1    202 sp|Q56339|FLHF_TREPA -            437     0.025   14.9   9.3   2   2   0.00066       0.3   11.3   0.1    22    37   220   235   202   416 0.76 AAA domain
DEAD                 PF00270.24   169 sp|Q56339|FLHF_TREPA -            437     0.026   14.0   0.0   1   1   0.00015     0.067   12.6   0.0     8    46   210   282   205   411 0.72 DEAD/DEAH box helicase
Miro                 PF08477.8    119 sp|Q56339|FLHF_TREPA -            437     0.027   14.9   0.1   1   1   0.00031      0.15   12.6   0.0     2    25   220   243   219   272 0.76 Miro-like protein
ABC_tran             PF00005.22   137 sp|Q56339|FLHF_TREPA -            437     0.035   14.4   0.3   1   1   0.00035      0.16   12.2   0.0    13    35   219   241   214   271 0.87 ABC transporter
AAA_10               PF12846.2    304 sp|Q56339|FLHF_TREPA -            437     0.038   13.4   0.0   1   1   0.00023      0.11   11.9   0.0     2    27   218   243   217   261 0.84 AAA-like domain
NACHT                PF05729.7    166 sp|Q56339|FLHF_TREPA -            437     0.051   13.2   0.2   1   1   0.00049      0.23   11.1   0.0     2    21   219   238   218   246 0.92 NACHT domain
DUF258               PF03193.11   161 sp|Q56339|FLHF_TREPA -            437     0.052   12.7   0.0   1   1   0.00038      0.18   11.0   0.0    35    56   216   238   189   258 0.85 Protein of unknown function, DUF258
AAA_33               PF13671.1    143 sp|Q56339|FLHF_TREPA -            437     0.053   13.3   0.1   1   1   0.00067      0.31   10.9   0.0     2    26   220   241   220   288 0.84 AAA domain
AAA_29               PF13555.1     62 sp|Q56339|FLHF_TREPA -            437     0.057   12.9   0.0   1   1   0.00023      0.11   12.0   0.0    21    40   215   234   198   246 0.80 P-loop containing region of AAA domain
Ras                  PF00071.17   162 sp|Q56339|FLHF_TREPA -            437     0.078   12.3   0.0   1   1   0.00041      0.19   11.1   0.0     2    45   220   262   219   271 0.88 Ras family
TrwB_AAD_bind        PF10412.4    386 sp|Q56339|FLHF_TREPA -            437     0.092   11.3   0.6   2   2   0.00099      0.46    9.0   0.0    13    36   215   238   202   245 0.86 Type IV secretion-system coupling protein DNA-binding domain
FliD_C               PF07195.7    239 sp|O83842|FLID_TREPA -            722   1.8e-62  210.7   2.1   1   1   1.3e-65   3.1e-62  209.9   2.1     1   238   449   705   449   706 0.96 Flagellar hook-associated protein 2 C-terminus
FliD_N               PF02465.13    99 sp|O83842|FLID_TREPA -            722   2.3e-18   66.4   4.1   1   2   1.4e-20   3.5e-17   62.6   0.2     6    98    14   107    11   108 0.96 Flagellar hook-associated protein 2 N-terminus
DUF3552              PF12072.3    201 sp|O83842|FLID_TREPA -            722     0.016   14.3   2.2   1   1   1.5e-05     0.036   13.2   2.2    69   125   665   721   656   722 0.75 Domain of unknown function (DUF3552)
Prefoldin_2          PF01920.15   106 sp|O83842|FLID_TREPA -            722      0.14   11.9   3.0   1   1   8.5e-05      0.21   11.3   1.0    67    93   665   691   662   713 0.89 Prefoldin subunit
FliE                 PF02049.13    97 sp|O83413|FLIE_TREPA -            124   2.2e-13   50.0   5.9   1   1   5.9e-17   2.9e-13   49.6   5.9    10    93    37   121    28   123 0.91 Flagellar hook-basal body complex protein FliE
Cathelicidins        PF00666.12    67 sp|O83413|FLIE_TREPA -            124     0.096   12.8   0.3   1   1   3.2e-05      0.16   12.1   0.0     2    22    53    73    52   114 0.80 Cathelicidin
YscJ_FliF_C          PF08345.6    160 sp|O83414|FLIF_TREPA -            567   7.2e-24   84.5   1.2   2   2   1.5e-27   7.2e-24   84.5   1.2     1   160   260   449   260   449 0.88 Flagellar M-ring protein C-terminal
YscJ_FliF            PF01514.12   207 sp|O83414|FLIF_TREPA -            567   1.9e-23   82.7   2.0   1   2   4.1e-27     2e-23   82.6   0.4     9   200    31   224    21   230 0.82 Secretory protein of YscJ/FliF family
SHR3_chaperone       PF08229.6    196 sp|O83414|FLIF_TREPA -            567      0.09   11.7   0.1   1   1   3.3e-05      0.16   10.8   0.1    41    81   452   492   440   499 0.88 ER membrane protein SH3
FliH                 PF02108.11   128 sp|O83416|FLIH_TREPA -            309     5e-25   87.8   3.4   1   1     3e-28     5e-25   87.8   3.4     4   128   161   288   158   288 0.97 Flagellar assembly protein FliH
TraB                 PF01963.12   259 sp|O83416|FLIH_TREPA -            309    0.0016   17.9   5.3   1   1     2e-06    0.0032   16.9   5.3   115   200    21   111    12   135 0.85 TraB family
RPA_interact_C       PF14768.1     82 sp|O83416|FLIH_TREPA -            309     0.063   13.6   0.5   1   1   9.3e-05      0.15   12.4   0.2     1    70    40   111    40   119 0.82 Replication protein A interacting C-terminal
DUF2161              PF09929.4    118 sp|O83416|FLIH_TREPA -            309      0.18   11.7   2.1   1   1   0.00011      0.18   11.7   0.6    51    93    83   124    49   128 0.74 Uncharacterized conserved protein (DUF2161)
DivIVA               PF05103.8    131 sp|O83416|FLIH_TREPA -            309       0.3   11.1  16.3   1   1    0.0001      0.17   11.9  13.7    39   112    62   133    46   143 0.77 DivIVA protein
KfrA_N               PF11740.3    120 sp|O83416|FLIH_TREPA -            309       2.3    8.7  23.6   1   1   0.00041      0.68   10.3  20.2    41   117    57   132    50   135 0.92 Plasmid replication region DNA-binding N-term
ATP-synt_ab          PF00006.20   215 sp|O83417|FLII_TREPA -            447   4.9e-74  248.4   0.0   1   1   3.5e-77   6.5e-74  248.0   0.0     1   215   146   356   146   356 1.00 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_N        PF02874.18    69 sp|O83417|FLII_TREPA -            447     5e-07   29.8   1.1   1   1   9.4e-10   1.8e-06   28.0   1.1     1    67    25    88    25    90 0.94 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab_C        PF00306.22   113 sp|O83417|FLII_TREPA -            447   0.00084   19.7   0.2   1   1     1e-06    0.0019   18.6   0.2     4    65   371   432   368   444 0.79 ATP synthase alpha/beta chain, C terminal domain
ABC_tran             PF00005.22   137 sp|O83417|FLII_TREPA -            447    0.0027   18.0   0.0   1   1   3.3e-06    0.0061   16.8   0.0     7    42   156   191   152   227 0.88 ABC transporter
DUF258               PF03193.11   161 sp|O83417|FLII_TREPA -            447    0.0044   16.2   0.0   1   1   4.3e-06     0.008   15.3   0.0    36    75   162   200   135   206 0.82 Protein of unknown function, DUF258
DUF87                PF01935.12   229 sp|O83417|FLII_TREPA -            447     0.077   12.8   0.2   1   1   7.7e-05      0.14   11.9   0.2    22    46   159   183   154   191 0.89 Domain of unknown function DUF87
AAA_22               PF13401.1    131 sp|O83417|FLII_TREPA -            447       0.1   12.7   0.0   1   1   0.00012      0.23   11.6   0.0     4    94   161   257   157   272 0.62 AAA domain
DUF416               PF04222.7    191 sp|O83417|FLII_TREPA -            447      0.11   11.6   0.0   1   1   9.3e-05      0.17   10.9   0.0    88   152   346   412   343   435 0.73 Protein of unknown function (DUF416)
FliL                 PF03748.9     99 sp|O07888|FLIL_TREPA -            182   5.4e-12   45.5   0.4   1   1   1.5e-15   7.4e-12   45.1   0.4     3    96    83   177    81   180 0.92 Flagellar basal body-associated protein FliL
Transglut_C          PF00927.17   107 sp|O07888|FLIL_TREPA -            182     0.038   14.0   0.0   1   1   1.1e-05     0.056   13.4   0.0    26    75   110   156    92   179 0.80 Transglutaminase family, C-terminal ig like domain
SCP2_2               PF13530.1    218 sp|O07888|FLIL_TREPA -            182     0.087   12.1   0.0   1   1   2.5e-05      0.13   11.6   0.0    68   141    77   159    72   167 0.87 Sterol carrier protein domain
FliM                 PF02154.10   192 sp|P74927|FLIM_TREPA -            344   3.6e-88  294.2   0.7   1   1   6.5e-92   4.8e-88  293.8   0.7     1   192    39   229    39   229 1.00 Flagellar motor switch protein FliM
SpoA                 PF01052.15    77 sp|P74927|FLIM_TREPA -            344   5.7e-19   67.4   0.3   1   1   1.4e-22     1e-18   66.6   0.3     1    76   250   326   250   327 0.97 Surface presentation of antigens (SPOA)
FliP                 PF00813.15   194 sp|P74930|FLIP_TREPA -            271   2.7e-72  242.5  14.7   1   1   2.3e-76   3.4e-72  242.2  14.7     1   193    72   266    72   267 0.98 FliP family
Bac_export_3         PF01313.14    76 sp|P74931|FLIQ_TREPA -             94   1.5e-26   91.8  10.9   1   1   3.6e-30   1.8e-26   91.6  10.9     3    75     7    79     5    80 0.97 Bacterial export proteins, family 3
DUF2721              PF11026.3    130 sp|P74931|FLIQ_TREPA -             94     0.045   13.3   5.0   1   1   1.2e-05     0.058   13.0   5.0    68   117    23    74    16    88 0.86 Protein of unknown function (DUF2721)
DUF1129              PF06570.6    206 sp|P74931|FLIQ_TREPA -             94      0.25   10.6   3.4   1   1     6e-05       0.3   10.3   3.4    83   136    26    80    15    87 0.77 Protein of unknown function (DUF1129)
Bac_export_1         PF01311.15   249 sp|P74932|FLIR_TREPA -            265   2.2e-71  240.0  35.1   1   1   1.7e-75   2.5e-71  239.9  35.1     2   248     7   254     6   255 0.98 Bacterial export proteins, family 1
FliW                 PF02623.10   121 sp|O83664|FLIW_TREPA -            150   3.5e-37  126.6   0.0   1   1   2.8e-41   4.2e-37  126.3   0.0     1   120    19   137    19   138 0.98 FliW protein
Formyl_trans_N       PF00551.14   181 sp|O83737|FMT_TREPA  -            319     4e-33  114.4   0.0   1   1   6.7e-37     5e-33  114.1   0.0    29   170    25   176     2   187 0.88 Formyl transferase
Formyl_trans_C       PF02911.13   100 sp|O83737|FMT_TREPA  -            319   2.4e-24   85.3   0.0   1   1   6.7e-28     5e-24   84.2   0.0     1    99   210   309   210   310 0.94 Formyl transferase, C-terminal domain
THF_DHG_CYH_C        PF02882.14   161 sp|O83714|FOLD_TREPA -            315     9e-65  216.6   0.3   1   1   4.4e-68   1.6e-64  215.8   0.3     1   159   124   289   124   291 0.97 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
THF_DHG_CYH          PF00763.18   117 sp|O83714|FOLD_TREPA -            315   2.9e-36  124.0   0.0   1   1   1.1e-39     4e-36  123.5   0.0     2   117     5   121     4   121 0.99 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
TilS                 PF09179.6     69 sp|O83714|FOLD_TREPA -            315     0.071   13.1   1.0   1   1     5e-05      0.19   11.8   1.0    11    51    52    92    49    98 0.93 TilS substrate binding domain
AAA_19               PF13245.1     76 sp|O83714|FOLD_TREPA -            315      0.37   10.5   7.8   3   3   8.5e-05      0.31   10.8   0.5     6    35   169   198   163   215 0.73 Part of AAA domain
Peptidase_M41        PF01434.13   213 sp|O83746|FTSH_TREPA -            609   2.4e-75  252.6   2.3   1   1   5.3e-78   3.4e-75  252.1   2.3     3   213   371   577   369   577 0.97 Peptidase family M41
AAA                  PF00004.24   132 sp|O83746|FTSH_TREPA -            609   1.1e-44  151.8   0.0   1   1   4.1e-47   2.6e-44  150.5   0.0     1   131   177   308   177   309 0.96 ATPase family associated with various cellular activities (AAA)
AAA_5                PF07728.9    139 sp|O83746|FTSH_TREPA -            609   7.1e-08   32.2   0.6   1   2   1.6e-09     1e-06   28.5   0.1     1   137   176   297   176   298 0.82 AAA domain (dynein-related subfamily)
TIP49                PF06068.8    398 sp|O83746|FTSH_TREPA -            609   2.5e-05   23.1   0.2   1   1     1e-07   6.7e-05   21.7   0.1    47    88   168   210   109   219 0.74 TIP49 C-terminus
AAA_17               PF13207.1    121 sp|O83746|FTSH_TREPA -            609   3.2e-05   24.7   0.1   1   1     3e-07   0.00019   22.2   0.0     2    82   177   276   177   327 0.62 AAA domain
AAA_22               PF13401.1    131 sp|O83746|FTSH_TREPA -            609   0.00016   21.7   2.9   1   1   6.5e-06    0.0042   17.2   0.5     7   108   177   266   174   291 0.62 AAA domain
AAA_16               PF13191.1    185 sp|O83746|FTSH_TREPA -            609   0.00019   21.4   5.3   1   2   4.6e-07    0.0003   20.8   0.5    22    82   172   229   165   391 0.76 AAA ATPase domain
Zeta_toxin           PF06414.7    201 sp|O83746|FTSH_TREPA -            609   0.00038   19.5   0.0   1   1   2.5e-06    0.0016   17.5   0.0    15    55   173   212   163   234 0.86 Zeta toxin
RuvB_N               PF05496.7    234 sp|O83746|FTSH_TREPA -            609   0.00069   18.7   0.0   1   1   2.8e-06    0.0018   17.3   0.0    52   111   176   243   126   263 0.70 Holliday junction DNA helicase ruvB N-terminus
AAA_33               PF13671.1    143 sp|O83746|FTSH_TREPA -            609    0.0007   19.4   0.1   1   1   4.2e-06    0.0027   17.5   0.0     2    34   177   211   177   267 0.82 AAA domain
AAA_2                PF07724.9    171 sp|O83746|FTSH_TREPA -            609   0.00085   19.2   0.0   1   1   3.7e-06    0.0024   17.8   0.0     6   100   177   267   175   277 0.78 AAA domain (Cdc48 subfamily)
AAA_25               PF13481.1    194 sp|O83746|FTSH_TREPA -            609    0.0017   17.7   3.4   1   2   1.9e-05     0.012   14.9   0.1    19    63   162   210   147   222 0.75 AAA domain
IstB_IS21            PF01695.12   178 sp|O83746|FTSH_TREPA -            609    0.0018   17.7   0.0   1   1   5.8e-06    0.0038   16.6   0.0    49    71   176   198   173   228 0.91 IstB-like ATP binding protein
AAA_19               PF13245.1     76 sp|O83746|FTSH_TREPA -            609    0.0021   17.7   2.7   1   1   4.2e-06    0.0027   17.4   0.2    10    32   175   195   168   206 0.79 Part of AAA domain
Mg_chelatase         PF01078.16   207 sp|O83746|FTSH_TREPA -            609    0.0027   16.8   0.5   1   2   3.4e-05     0.022   13.9   0.2    25    43   177   195   161   200 0.88 Magnesium chelatase, subunit ChlI
AAA_28               PF13521.1    163 sp|O83746|FTSH_TREPA -            609    0.0071   16.3   0.1   1   1   6.5e-05     0.042   13.8   0.0     2    39   177   215   176   293 0.75 AAA domain
AAA_18               PF13238.1    129 sp|O83746|FTSH_TREPA -            609     0.013   15.8   1.0   1   2   0.00024      0.15   12.3   0.0     1    21   177   197   177   267 0.83 AAA domain
FtsH_ext             PF06480.10   110 sp|O83746|FTSH_TREPA -            609     0.026   14.6   0.2   1   1   0.00043      0.27   11.3   0.0    29   106     3    80     2    83 0.68 FtsH Extracellular
Sigma54_activ_2      PF14532.1    138 sp|O83746|FTSH_TREPA -            609     0.032   14.2   0.0   1   1   0.00017      0.11   12.5   0.0    24    89   177   253   172   262 0.75 Sigma-54 interaction domain
AAA_14               PF13173.1    128 sp|O83746|FTSH_TREPA -            609     0.033   14.0   0.0   1   1   0.00018      0.11   12.3   0.0     5    74   177   246   174   278 0.69 AAA domain
PhoH                 PF02562.11   205 sp|O83746|FTSH_TREPA -            609     0.065   12.4   0.1   1   1   0.00027      0.17   11.0   0.1    22    41   177   196   166   201 0.89 PhoH-like protein
NACHT                PF05729.7    166 sp|O83746|FTSH_TREPA -            609      0.14   11.8   0.2   1   1   0.00084      0.54    9.8   0.0     3    23   177   197   175   201 0.87 NACHT domain
FtsK_SpoIIIE         PF01580.13   205 sp|O83964|FTSK_TREPA -            799     2e-55  187.4   0.0   1   1   3.1e-58   3.1e-55  186.8   0.0     3   204   445   635   443   636 0.95 FtsK/SpoIIIE family
Ftsk_gamma           PF09397.5     67 sp|O83964|FTSK_TREPA -            799   1.4e-29  101.5   0.1   1   1   3.2e-32   3.2e-29  100.4   0.1     3    64   737   798   736   799 0.97 Ftsk gamma domain
AAA_10               PF12846.2    304 sp|O83964|FTSK_TREPA -            799   1.2e-08   34.7   0.0   1   2   2.9e-06    0.0029   17.1   0.0     2    38   481   521   480   529 0.91 AAA-like domain
AAA_10               PF12846.2    304 sp|O83964|FTSK_TREPA -            799   1.2e-08   34.7   0.0   2   2   8.9e-06    0.0088   15.5   0.0   216   289   585   657   530   670 0.74 AAA-like domain
NACHT                PF05729.7    166 sp|O83964|FTSK_TREPA -            799   0.00023   20.8   0.0   1   1   4.4e-07   0.00044   19.9   0.0     3   141   483   671   482   688 0.88 NACHT domain
DEAD                 PF00270.24   169 sp|O83964|FTSK_TREPA -            799   0.00027   20.4   0.1   1   1   6.9e-07   0.00068   19.1   0.1     7   112   459   604   455   633 0.67 DEAD/DEAH box helicase
DUF87                PF01935.12   229 sp|O83964|FTSK_TREPA -            799    0.0004   20.2   0.0   1   1   7.9e-07   0.00079   19.3   0.0    23    60   480   520   468   521 0.85 Domain of unknown function DUF87
AAA_22               PF13401.1    131 sp|O83964|FTSK_TREPA -            799   0.00065   19.8   0.1   1   1   1.6e-06    0.0016   18.5   0.1     5   123   481   631   477   639 0.68 AAA domain
ResIII               PF04851.10   184 sp|O83964|FTSK_TREPA -            799    0.0012   18.7   0.0   1   1   2.4e-06    0.0024   17.7   0.0    23   154   478   597   438   598 0.77 Type III restriction enzyme, res subunit
T2SE                 PF00437.15   272 sp|O83964|FTSK_TREPA -            799    0.0019   17.1   0.0   1   1     3e-06    0.0029   16.5   0.0   127   155   479   507   410   547 0.77 Type II/IV secretion system protein
AAA_29               PF13555.1     62 sp|O83964|FTSK_TREPA -            799    0.0039   16.6   0.0   1   1   9.3e-06    0.0092   15.4   0.0    15    44   473   501   469   510 0.80 P-loop containing region of AAA domain
TrwB_AAD_bind        PF10412.4    386 sp|O83964|FTSK_TREPA -            799     0.015   13.9   0.0   1   1   3.3e-05     0.032   12.8   0.0    14    39   479   504   472   521 0.86 Type IV secretion-system coupling protein DNA-binding domain
AAA_16               PF13191.1    185 sp|O83964|FTSK_TREPA -            799     0.028   14.4   0.1   1   1   9.6e-05     0.095   12.6   0.1    23    58   479   520   473   629 0.64 AAA ATPase domain
AAA_23               PF13476.1    202 sp|O83964|FTSK_TREPA -            799     0.031   14.6   0.0   1   1   5.9e-05     0.058   13.7   0.0    13    66   473   528   469   602 0.72 AAA domain
Zot                  PF05707.7    193 sp|O83964|FTSK_TREPA -            799      0.15   11.5   0.0   1   1   0.00049      0.48    9.8   0.0     4   127   484   635   483   647 0.61 Zonular occludens toxin (Zot)
DUF815               PF05673.8    250 sp|O83964|FTSK_TREPA -            799      0.19   10.6   0.0   1   1   0.00031      0.31    9.9   0.0    52   101   479   534   471   545 0.74 Protein of unknown function (DUF815)
Tubulin              PF00091.20   216 sp|O83405|FTSZ_TREPA -            418   2.1e-36  125.7   0.7   1   1   1.3e-39   9.6e-36  123.6   0.7     2   214    20   189    19   191 0.97 Tubulin/FtsZ family, GTPase domain
FtsZ_C               PF12327.3     95 sp|O83405|FTSZ_TREPA -            418   3.2e-29  100.8   2.8   1   1   1.2e-32   8.7e-29   99.4   2.8     1    94   228   322   228   323 0.99 FtsZ family, C-terminal domain
Gp_dh_C              PF02800.15   157 sp|O83816|G3P_TREPA  -            350   2.3e-65  218.8   0.0   1   1   1.2e-68   3.5e-65  218.2   0.0     1   157   167   329   167   329 0.98 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_N              PF00044.19   151 sp|O83816|G3P_TREPA  -            350   3.3e-46  157.0   0.0   1   1   1.7e-49   4.9e-46  156.4   0.0     1   151     1   162     1   162 0.90 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
NAD_binding_3        PF03447.11   117 sp|O83816|G3P_TREPA  -            350      0.01   16.1   0.1   1   1   3.6e-05      0.11   12.9   0.1     1    95     7   130     7   137 0.74 Homoserine dehydrogenase, NAD binding domain
DapB_N               PF01113.15   124 sp|O83816|G3P_TREPA  -            350     0.012   15.4   0.6   1   2   1.6e-05     0.049   13.5   0.1     1    36     1    39     1    71 0.81 Dihydrodipicolinate reductase, N-terminus
G6PD_C               PF02781.11   294 sp|O83491|G6PD_TREPA -            515  1.3e-103  345.9   0.0   1   1  2.1e-107  1.6e-103  345.6   0.0     1   292   201   500   201   502 0.97 Glucose-6-phosphate dehydrogenase, C-terminal domain
G6PD_N               PF00479.17   183 sp|O83491|G6PD_TREPA -            515   4.3e-62  209.6   0.0   1   1   8.5e-66   6.3e-62  209.0   0.0     1   183    16   199    16   199 0.99 Glucose-6-phosphate dehydrogenase, NAD binding domain
PGI                  PF00342.14   486 sp|O83488|G6PI_TREPA -            535  1.2e-107  360.3   0.0   1   1  1.1e-111  1.6e-107  359.9   0.0     2   467    51   513    50   523 0.93 Phosphoglucose isomerase
GalKase_gal_bdg      PF10509.4     52 sp|O83433|GAL1_TREPA -            397   3.7e-13   48.5   0.0   1   1   1.9e-16   7.1e-13   47.6   0.0     3    52    20    69    18    69 0.96 Galactokinase galactose-binding signature
GHMP_kinases_C       PF08544.8     85 sp|O83433|GAL1_TREPA -            397   8.2e-07   29.1   0.0   1   1   6.6e-10   2.5e-06   27.6   0.0     1    70   290   364   290   371 0.93 GHMP kinases C terminal
NOSIC                PF08060.8     53 sp|O83433|GAL1_TREPA -            397    0.0061   16.3   0.0   2   2   1.7e-05     0.064   13.0   0.0    16    45   306   335   302   336 0.92 NOSIC (NUC001) domain
GHMP_kinases_N       PF00288.21    67 sp|O83433|GAL1_TREPA -            397     0.054   13.5   0.0   1   1   2.9e-05      0.11   12.6   0.0     3    49   124   170   122   190 0.77 GHMP kinases N terminal domain
Amidase              PF01425.16   441 sp|O83983|GATA_TREPA -            506  9.9e-141  469.5   0.2   1   1  7.8e-145  1.2e-140  469.3   0.2     3   441    50   494    48   494 0.96 Amidase
GatB_N               PF02934.10   289 sp|O83984|GATB_TREPA -            509  1.1e-103  346.1   0.0   1   1  2.7e-107  1.4e-103  345.8   0.0     1   288    27   321    27   322 0.94 GatB/GatE catalytic domain
GatB_Yqey            PF02637.13   148 sp|O83984|GATB_TREPA -            509   1.1e-45  155.0   0.4   1   1     3e-49   1.5e-45  154.5   0.4     1   148   359   506   359   506 0.99 GatB domain
ApbA_C               PF08546.6    125 sp|O83984|GATB_TREPA -            509     0.016   15.2   0.5   1   1   5.1e-05      0.25   11.3   0.5    34   122   421   507   347   509 0.78 Ketopantoate reductase PanE/ApbA C terminal
GDPD                 PF03009.12   256 sp|O30405|GLPQ_TREPA -            356   6.7e-48  163.4   0.0   1   1   5.7e-52   8.4e-48  163.0   0.0     2   255    31   344    31   345 0.94 Glycerophosphoryl diester phosphodiesterase family
SHMT                 PF00464.14   399 sp|O83349|GLYA_TREPA -            574  1.2e-118  396.0   0.0   1   2   4.4e-30   3.3e-26   91.5   0.0     5   124    36   154    32   164 0.88 Serine hydroxymethyltransferase
SHMT                 PF00464.14   399 sp|O83349|GLYA_TREPA -            574  1.2e-118  396.0   0.0   2   2   5.2e-94   3.9e-90  302.1   0.0   110   399   168   441   161   441 0.96 Serine hydroxymethyltransferase
Baculo_p26           PF04766.7    234 sp|O83349|GLYA_TREPA -            574     0.095   11.9   0.1   1   1   2.1e-05      0.15   11.2   0.1    40    71    29    69    19    90 0.74 Nucleopolyhedrovirus p26 protein
NAD_Gly3P_dh_N       PF01210.18   157 sp|O83973|GPDA_TREPA -            356     1e-50  171.5   0.0   1   1   9.7e-54   1.4e-50  171.0   0.0     1   157     3   176     3   176 0.96 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C       PF07479.9    149 sp|O83973|GPDA_TREPA -            356   7.7e-48  161.9   0.1   1   1   8.9e-51   1.3e-47  161.2   0.1     2   149   195   353   194   353 0.97 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
ApbA                 PF02558.11   151 sp|O83973|GPDA_TREPA -            356   1.1e-07   31.3   0.0   1   1   2.4e-10   3.5e-07   29.7   0.0     1    85     4    89     4    96 0.78 Ketopantoate reductase PanE/ApbA
F420_oxidored        PF03807.12    96 sp|O83973|GPDA_TREPA -            356   3.3e-06   27.4   0.1   1   1     8e-09   1.2e-05   25.6   0.0     2    81     4    91     3    99 0.85 NADP oxidoreductase coenzyme F420-dependent
NAD_binding_2        PF03446.10   163 sp|O83973|GPDA_TREPA -            356   0.00018   21.4   0.0   1   1   2.6e-07   0.00039   20.3   0.0     1    67     1    81     1    99 0.85 NAD binding domain of 6-phosphogluconate dehydrogenase
Rossmann-like        PF10727.4    127 sp|O83973|GPDA_TREPA -            356    0.0013   18.4   0.1   1   2   1.3e-05      0.02   14.6   0.0    13    91     4    94     2   104 0.70 Rossmann-like domain
NAD_binding_10       PF13460.1    183 sp|O83973|GPDA_TREPA -            356     0.005   16.8   0.0   1   1   6.7e-06    0.0099   15.8   0.0     1    69     4    80     4   136 0.78 NADH(P)-binding
DAO                  PF01266.19   358 sp|O83973|GPDA_TREPA -            356     0.042   12.7   0.1   1   1   4.7e-05      0.07   12.0   0.1     2    35     4    38     3    52 0.85 FAD dependent oxidoreductase
Pyr_redox            PF00070.22    80 sp|O83973|GPDA_TREPA -            356     0.044   14.2   0.1   1   2   0.00034      0.51   10.7   0.0     1    36     3    38     3    48 0.88 Pyridine nucleotide-disulphide oxidoreductase
3HCDH_N              PF02737.13   180 sp|O83973|GPDA_TREPA -            356     0.047   13.3   0.0   1   1   5.3e-05     0.078   12.6   0.0     2    43     4    45     3    80 0.90 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
His_Phos_1           PF00300.17   158 sp|P96121|GPMA_TREPA -            251   1.5e-43  148.6   0.0   1   1   1.3e-47   1.9e-43  148.2   0.0     1   158     2   192     2   192 0.98 Histidine phosphatase superfamily (branch 1)
GreA_GreB_N          PF03449.10    74 sp|O83063|GREA_TREPA -            162   4.9e-23   80.9   3.9   1   1   1.4e-26   6.9e-23   80.5   3.9     5    74     8    77     3    77 0.96 Transcription elongation factor, N-terminal
GreA_GreB            PF01272.14    77 sp|O83063|GREA_TREPA -            162   1.7e-22   78.9   0.0   1   1   8.1e-26     4e-22   77.6   0.0     4    76    86   158    83   159 0.97 Transcription elongation factor, GreA/GreB, C-term
GrpE                 PF01025.14   166 sp|O83245|GRPE_TREPA -            220   1.2e-41  141.9   0.8   1   1   2.1e-45   1.5e-41  141.6   0.8    13   164    46   203    37   205 0.91 GrpE
RP-C                 PF03428.8    177 sp|O83245|GRPE_TREPA -            220   0.00026   20.5   1.8   1   1   5.1e-08   0.00038   19.9   1.8    80   173    50   146    45   149 0.86 Replication protein C N-terminal domain
NIF3                 PF01784.13   242 sp|O83942|GTPC1_TREPA -            286   4.7e-47  160.6   0.0   1   1   8.1e-51   1.2e-46  159.2   0.0    17   238    23   272    10   275 0.84 NIF3 (NGG1p interacting factor 3)
DNA_topoisoIV        PF00521.15   426 sp|O83051|GYRA_TREPA -            813    8e-145  482.9   0.0   1   1  2.2e-148  1.1e-144  482.4   0.0     1   417    36   468    36   477 0.98 DNA gyrase/topoisomerase IV, subunit A
DNA_gyraseA_C        PF03989.8     48 sp|O83051|GYRA_TREPA -            813     7e-51  169.3  17.4   1   6   2.2e-12   1.1e-08   34.2   0.0     2    46   510   554   509   556 0.93 DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C        PF03989.8     48 sp|O83051|GYRA_TREPA -            813     7e-51  169.3  17.4   2   6     1e-09   5.1e-06   25.7   0.0     1    32   559   590   559   608 0.90 DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C        PF03989.8     48 sp|O83051|GYRA_TREPA -            813     7e-51  169.3  17.4   3   6   4.3e-08   0.00021   20.5   0.3     2    47   616   659   615   660 0.93 DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C        PF03989.8     48 sp|O83051|GYRA_TREPA -            813     7e-51  169.3  17.4   4   6   2.1e-15     1e-11   43.9   0.8     1    47   663   709   663   710 0.95 DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C        PF03989.8     48 sp|O83051|GYRA_TREPA -            813     7e-51  169.3  17.4   5   6   6.8e-10   3.4e-06   26.2   0.2     1    44   713   757   713   760 0.87 DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C        PF03989.8     48 sp|O83051|GYRA_TREPA -            813     7e-51  169.3  17.4   6   6     1e-09     5e-06   25.7   0.0     1    45   764   808   764   810 0.94 DNA gyrase C-terminal domain, beta-propeller
TPD52                PF04201.10   162 sp|O83051|GYRA_TREPA -            813     0.037   13.7   0.7   1   1   1.5e-05     0.075   12.7   0.7    18    64   428   474   412   477 0.87 Tumour protein D52 family
DNA_gyraseB          PF00204.20   173 sp|O08399|GYRB_TREPA -            637     1e-57  194.0   0.0   1   1   5.2e-61   1.5e-57  193.5   0.0     1   173   222   395   222   395 0.96 DNA gyrase B
DNA_gyraseB_C        PF00986.16    65 sp|O08399|GYRB_TREPA -            637   1.6e-27   95.0   0.3   1   1     1e-30     3e-27   94.1   0.3     2    65   564   627   563   627 0.97 DNA gyrase B subunit, carboxyl terminus
Toprim               PF01751.17   100 sp|O08399|GYRB_TREPA -            637   1.9e-21   75.8   0.0   1   1   1.2e-24   3.7e-21   74.9   0.0     1    98   423   533   423   535 0.95 Toprim domain
HATPase_c            PF02518.21   111 sp|O08399|GYRB_TREPA -            637   2.4e-16   59.4   0.0   1   1   1.7e-19     5e-16   58.4   0.0     3   105    32   167    30   173 0.90 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3          PF13589.1    137 sp|O08399|GYRB_TREPA -            637   0.00032   20.3   0.0   1   1   3.3e-07   0.00097   18.8   0.0     7    54    39    90    34   155 0.64 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Band_7               PF01145.20   179 sp|O83152|HFLC_TREPA -            331     8e-24   84.5   4.1   1   1   1.8e-27   2.6e-23   82.8   4.1     3   178    38   247    36   248 0.88 SPFH domain / Band 7 family
Band_7               PF01145.20   179 sp|O83151|HFLK_TREPA -            328   2.3e-31  109.0   1.0   1   1   2.1e-35   3.1e-31  108.6   1.0     2   168    35   219    34   248 0.94 SPFH domain / Band 7 family
Hpr_kinase_C         PF07475.7    171 sp|O83600|HPRK_TREPA -            319   5.3e-70  234.1   0.8   1   1   2.7e-73   6.7e-70  233.8   0.8     3   170   130   298   128   299 0.98 HPr Serine kinase C-terminal domain
Hpr_kinase_N         PF02603.11   127 sp|O83600|HPRK_TREPA -            319   3.3e-34  117.3   0.0   1   1   3.8e-37   9.4e-34  115.8   0.0    10   127    10   127     4   127 0.97 HPr Serine kinase N terminus
DRTGG                PF07085.7    105 sp|O83600|HPRK_TREPA -            319    0.0037   16.8   0.0   1   1   3.2e-06     0.008   15.7   0.0    60   103    68   123    55   125 0.80 DRTGG domain
AAA_18               PF13238.1    129 sp|O83600|HPRK_TREPA -            319    0.0082   16.4   0.2   1   1   7.7e-06     0.019   15.2   0.2     1    35   148   182   148   288 0.76 AAA domain
Sigma54_activat      PF00158.21   168 sp|O83600|HPRK_TREPA -            319      0.12   11.8   0.0   1   1   0.00011      0.26   10.7   0.0    21    59   144   183   133   190 0.79 Sigma-54 interaction domain
AAA_16               PF13191.1    185 sp|O83600|HPRK_TREPA -            319      0.12   12.3   0.0   1   1   7.9e-05       0.2   11.6   0.0    26    63   147   185   135   261 0.79 AAA ATPase domain
HSP90                PF00183.13   531 sp|O83949|HTPG_TREPA -            639  2.1e-100  336.6   4.7   1   2   6.2e-06     0.031   12.6   0.2     5    39   196   231   192   235 0.77 Hsp90 protein
HSP90                PF00183.13   531 sp|O83949|HTPG_TREPA -            639  2.1e-100  336.6   4.7   2   2  2.4e-101   1.2e-97  327.5   1.9    74   493   224   638   219   639 0.93 Hsp90 protein
HATPase_c_3          PF13589.1    137 sp|O83949|HTPG_TREPA -            639   1.6e-14   53.7   0.1   1   1     6e-18     3e-14   52.8   0.1     4   121    26   164    22   180 0.77 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c            PF02518.21   111 sp|O83949|HTPG_TREPA -            639   1.1e-08   34.7   0.0   1   1   4.3e-12   2.1e-08   33.8   0.0     3   108    26   186    24   189 0.75 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
eIF-1a               PF01176.14    65 sp|O83135|IF1_TREPA  -             72     4e-25   87.0   0.0   1   1     6e-29   4.5e-25   86.8   0.0     1    65     5    70     5    70 0.97 Translation initiation factor 1A / IF-1
TOBE_2               PF08402.5     75 sp|O83135|IF1_TREPA  -             72     0.036   14.0   0.0   1   1   6.4e-06     0.048   13.6   0.0    31    72    19    62     4    63 0.92 TOBE domain
GTP_EFTU             PF00009.22   188 sp|O83861|IF2_TREPA  -            842   7.4e-40  136.3   1.1   1   1   3.2e-42   4.7e-39  133.7   1.1     5   185   332   490   328   493 0.95 Elongation factor Tu GTP binding domain
IF-2                 PF11987.3    109 sp|O83861|IF2_TREPA  -            842   1.2e-37  128.0   2.6   1   1   8.2e-41   1.2e-37  128.0   2.6     2   108   612   719   611   720 0.98 Translation-initiation factor 2
IF2_N                PF04760.10    54 sp|O83861|IF2_TREPA  -            842   1.6e-16   59.6   0.3   1   1   3.4e-19   5.1e-16   58.0   0.3     1    54   253   304   253   304 0.97 Translation initiation factor IF-2, N-terminal region
GTP_EFTU_D2          PF03144.20    74 sp|O83861|IF2_TREPA  -            842   2.9e-15   56.1   4.6   1   2   6.6e-11   9.8e-08   32.0   0.1     1    73   518   580   518   581 0.91 Elongation factor Tu domain 2
GTP_EFTU_D2          PF03144.20    74 sp|O83861|IF2_TREPA  -            842   2.9e-15   56.1   4.6   2   2   1.5e-08   2.3e-05   24.4   1.0     1    59   750   806   750   808 0.94 Elongation factor Tu domain 2
MMR_HSR1             PF01926.18   116 sp|O83861|IF2_TREPA  -            842   1.3e-05   25.1   0.4   1   1   2.8e-08   4.2e-05   23.4   0.1     2   116   333   438   332   438 0.74 50S ribosome-binding GTPase
Miro                 PF08477.8    119 sp|O83861|IF2_TREPA  -            842   0.00012   22.5   0.1   1   1     2e-07   0.00029   21.3   0.1     2   119   333   440   332   440 0.91 Miro-like protein
FeoB_N               PF02421.13   156 sp|O83861|IF2_TREPA  -            842    0.0033   16.7   0.3   1   1     1e-05     0.015   14.5   0.3     3   126   333   450   331   487 0.76 Ferrous iron transport protein B
SRPRB                PF09439.5    181 sp|O83861|IF2_TREPA  -            842     0.025   13.7   0.2   1   1   9.7e-05      0.14   11.3   0.2     4   133   331   450   328   458 0.72 Signal recognition particle receptor beta subunit
Arf                  PF00025.16   175 sp|O83861|IF2_TREPA  -            842     0.041   13.1   0.0   1   1   6.8e-05       0.1   11.8   0.0    24   145   340   458   326   490 0.68 ADP-ribosylation factor family
IF3_C                PF00707.17    88 sp|O83822|IF3_TREPA  -            179   1.1e-32  111.6   0.1   1   1   6.4e-36   1.9e-32  110.8   0.1     3    88    92   177    90   177 0.98 Translation initiation factor IF-3, C-terminal domain
IF3_N                PF05198.11    76 sp|O83822|IF3_TREPA  -            179     1e-29  102.2   0.0   1   1   5.5e-33   1.6e-29  101.6   0.0     2    76    11    85    10    85 0.97 Translation initiation factor IF-3, N-terminal domain
mIF3                 PF14877.1    181 sp|O83822|IF3_TREPA  -            179    0.0086   15.4   0.2   1   1   4.4e-06     0.013   14.8   0.2   113   165    75   129    65   140 0.75 Mitochondrial translation initiation factor
DUF1107              PF06526.7     64 sp|O83822|IF3_TREPA  -            179       0.1   12.3   0.0   1   1   0.00012      0.35   10.7   0.0    26    56    67    96    65   102 0.83 Protein of unknown function (DUF1107)
Oligomerisation      PF02410.10   100 sp|O83720|IOJAP_TREPA -            111   1.3e-21   76.4   0.0   1   1   2.2e-25   1.6e-21   76.1   0.0     2   100     7   104     6   104 0.85 Oligomerisation domain
Ion_trans_N          PF08412.5     77 sp|O83720|IOJAP_TREPA -            111     0.079   12.2   0.0   1   1   1.5e-05      0.11   11.8   0.0    12    51    59   100    50   106 0.82 Ion transport protein N-terminal
YgbB                 PF02542.11   157 sp|O83525|ISPDF_TREPA -            399   3.7e-54  182.7   0.0   1   1   7.1e-58   5.3e-54  182.3   0.0     2   156   244   398   243   399 0.99 YgbB family
IspD                 PF01128.14   221 sp|O83525|ISPDF_TREPA -            399   3.2e-36  124.9   0.0   1   1     7e-40   5.2e-36  124.2   0.0    41   213    36   220     8   225 0.86 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
GHMP_kinases_N       PF00288.21    67 sp|O83386|ISPE_TREPA -            291   9.4e-09   35.2   2.7   1   2     2e-12   1.5e-08   34.5   1.0     2    66    87   150    86   151 0.76 GHMP kinases N terminal domain
GHMP_kinases_C       PF08544.8     85 sp|O83386|ISPE_TREPA -            291   0.00017   21.7   0.0   1   1   5.2e-08   0.00039   20.5   0.0    27    74   227   272   207   279 0.85 GHMP kinases C terminal
GcpE                 PF04551.9    359 sp|O83460|ISPG_TREPA -            404    1e-110  369.9   0.0   1   1  8.4e-115  1.2e-110  369.6   0.0     6   357    45   395    41   397 0.96 GcpE protein
LYTB                 PF02401.13   281 sp|O83558|ISPH_TREPA -            376  2.8e-100  334.8   0.2   1   1  6.9e-104  3.4e-100  334.5   0.2     1   280    10   322    10   323 0.96 LytB protein
PK_C                 PF02887.11   117 sp|O83558|ISPH_TREPA -            376     0.022   14.2   5.0   2   2   9.3e-06     0.046   13.2   2.4     2    89   216   324   215   336 0.80 Pyruvate kinase, alpha/beta domain
CoA_binding_2        PF13380.1    116 sp|O83558|ISPH_TREPA -            376      0.04   14.1   2.2   1   2   1.2e-05     0.059   13.5   0.2    58   113    68   124    45   127 0.86 CoA binding domain
Prenyltransf         PF01255.14   223 sp|O83612|ISPT_TREPA -            228   6.1e-73  244.6   0.0   1   1   9.3e-77   6.9e-73  244.4   0.0     1   222     7   225     7   226 0.97 Putative undecaprenyl diphosphate synthase
Med14                PF08638.6    195 sp|O83612|ISPT_TREPA -            228     0.046   12.9   0.0   1   1   8.6e-06     0.064   12.4   0.0    42    87    35    82    21   113 0.81 Mediator complex subunit MED14
ADK                  PF00406.17   151 sp|O83604|KAD_TREPA  -            211   4.6e-43  146.6   0.0   1   1   4.4e-46   5.5e-43  146.4   0.0     2   150     6   185     5   186 0.99 Adenylate kinase
ADK_lid              PF05191.9     36 sp|O83604|KAD_TREPA  -            211     1e-14   53.8   1.8   1   1     2e-17   2.5e-14   52.6   1.8     1    36   122   157   122   157 0.99 Adenylate kinase, active site lid
AAA_17               PF13207.1    121 sp|O83604|KAD_TREPA  -            211   6.6e-06   26.9   0.0   1   1   7.8e-09   9.7e-06   26.4   0.0     5   106     6   117     2   166 0.62 AAA domain
AAA_33               PF13671.1    143 sp|O83604|KAD_TREPA  -            211   0.00017   21.4   0.2   1   1   4.6e-07   0.00056   19.7   0.2     3   118     4   122     3   177 0.71 AAA domain
DUF3039              PF11238.3     58 sp|O83604|KAD_TREPA  -            211    0.0021   17.4   0.5   1   1   3.6e-06    0.0045   16.4   0.5    15    53   112   151   106   154 0.88 Protein of unknown function (DUF3039)
AAA_18               PF13238.1    129 sp|O83604|KAD_TREPA  -            211    0.0048   17.2   0.4   1   1   1.9e-05     0.023   15.0   0.4     3   112     5   122     4   126 0.55 AAA domain
ABC_tran             PF00005.22   137 sp|O83604|KAD_TREPA  -            211    0.0094   16.2   0.0   1   1   8.3e-06      0.01   16.1   0.0    14   102     3    91     1   179 0.83 ABC transporter
DZR                  PF12773.2     50 sp|O83604|KAD_TREPA  -            211     0.042   13.6   0.2   1   1   6.1e-05     0.075   12.8   0.2    11    37   121   150   117   160 0.84 Double zinc ribbon
AAA_28               PF13521.1    163 sp|O83604|KAD_TREPA  -            211     0.048   13.6   0.1   1   1   6.1e-05     0.076   12.9   0.1     1    44     2    48     2    78 0.82 AAA domain
AAA                  PF00004.24   132 sp|O83604|KAD_TREPA  -            211      0.13   12.4   0.2   1   1   0.00018      0.23   11.6   0.2     2    35     4    35     3    63 0.74 ATPase family associated with various cellular activities (AAA)
Zn_Tnp_IS1595        PF12760.2     46 sp|O83604|KAD_TREPA  -            211       0.2   11.4   1.4   1   1   0.00034      0.41   10.4   1.4    16    44   120   149   116   151 0.88 Transposase zinc-ribbon domain
Cytidylate_kin2      PF13189.1    179 sp|O83362|KCY_TREPA  -            174   5.7e-19   68.7   0.3   1   1   3.9e-20   4.9e-17   62.4   0.3     2   178     3   152     2   153 0.88 Cytidylate kinase-like family
AAA_18               PF13238.1    129 sp|O83362|KCY_TREPA  -            174     1e-09   38.7   0.0   1   1   1.2e-12   1.4e-09   38.2   0.0     1   117     3   113     3   136 0.80 AAA domain
AAA_17               PF13207.1    121 sp|O83362|KCY_TREPA  -            174   1.9e-08   35.1   0.1   1   1   2.6e-11   3.2e-08   34.4   0.1     1   116     2   110     2   166 0.66 AAA domain
SKI                  PF01202.17   158 sp|O83362|KCY_TREPA  -            174   1.4e-05   25.0   0.1   1   1   1.6e-08   1.9e-05   24.5   0.1     1   157     9   167     9   168 0.75 Shikimate kinase
Cytidylate_kin       PF02224.13   158 sp|O83362|KCY_TREPA  -            174     2e-05   24.1   0.3   1   1   1.9e-08   2.4e-05   23.8   0.3    53   131    61   133    38   165 0.78 Cytidylate kinase
AAA_28               PF13521.1    163 sp|O83362|KCY_TREPA  -            174   2.8e-05   24.1   0.0   1   2     1e-07   0.00013   21.9   0.0     1    57     2    59     2    76 0.81 AAA domain
PRK                  PF00485.13   194 sp|O83362|KCY_TREPA  -            174   0.00041   19.9   0.0   1   2   3.7e-06    0.0045   16.5   0.0     2    32     3    33     2    66 0.70 Phosphoribulokinase / Uridine kinase family
CoaE                 PF01121.15   180 sp|O83362|KCY_TREPA  -            174   0.00055   19.3   0.1   1   2   0.00015      0.19   11.1   0.0     2    48     2    51     1    67 0.78 Dephospho-CoA kinase
HTH_AsnC-type        PF13404.1     42 sp|O83362|KCY_TREPA  -            174     0.025   14.0   0.3   2   2   0.00014      0.17   11.4   0.0    19    38    32    51    30    53 0.91 AsnC-type helix-turn-helix domain
HTH_24               PF13412.1     48 sp|O83362|KCY_TREPA  -            174     0.079   12.3   0.2   2   2    0.0004       0.5    9.8   0.0    19    37    32    50    30    52 0.90 Winged helix-turn-helix DNA-binding
Thymidylate_kin      PF02223.12   186 sp|O83373|KTHY_TREPA -            208   8.5e-45  152.4   0.0   1   1   4.2e-48     1e-44  152.1   0.0     1   186    10   197    10   197 0.93 Thymidylate kinase
AAA_18               PF13238.1    129 sp|O83373|KTHY_TREPA -            208   0.00026   21.2   0.0   1   1   5.2e-07    0.0013   19.0   0.0     1   114     8   147     8   159 0.72 AAA domain
dNK                  PF01712.14   146 sp|O83373|KTHY_TREPA -            208   0.00048   20.0   0.2   1   1   5.1e-07    0.0013   18.6   0.2    60   123   118   179    84   203 0.73 Deoxynucleoside kinase
AAA_28               PF13521.1    163 sp|O83373|KTHY_TREPA -            208     0.001   19.0   0.0   1   1   6.5e-07    0.0016   18.4   0.0     2   105     8   123     7   205 0.69 AAA domain
AAA_33               PF13671.1    143 sp|O83373|KTHY_TREPA -            208    0.0035   17.2   0.0   1   1   3.6e-06     0.009   15.8   0.0     2   122     8   149     7   170 0.72 AAA domain
AAA_17               PF13207.1    121 sp|O83373|KTHY_TREPA -            208    0.0068   17.2   0.0   1   1     6e-06     0.015   16.1   0.0     2   114     8   149     7   205 0.71 AAA domain
2-Hacid_dh_C         PF02826.14   178 sp|O83080|LDHD_TREPA -            331   1.4e-56  190.4   0.0   1   1   1.6e-59   2.4e-56  189.6   0.0     2   178   112   298   111   298 0.91 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
2-Hacid_dh           PF00389.25   133 sp|O83080|LDHD_TREPA -            331   2.2e-26   91.9   0.0   1   1   1.7e-29   2.5e-26   91.6   0.0     3   131     5   328     3   330 0.97 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AlaDh_PNT_C          PF01262.16   168 sp|O83080|LDHD_TREPA -            331   7.5e-06   25.6   0.7   1   2   1.3e-07   0.00019   21.0   0.2    21    55   147   181   138   195 0.87 Alanine dehydrogenase/PNT, C-terminal domain
NAD_binding_2        PF03446.10   163 sp|O83080|LDHD_TREPA -            331   0.00051   19.9   0.0   1   1   5.9e-07   0.00087   19.1   0.0     3   110   148   250   146   259 0.85 NAD binding domain of 6-phosphogluconate dehydrogenase
IlvN                 PF07991.7    165 sp|O83080|LDHD_TREPA -            331    0.0073   15.6   0.0   1   1   7.7e-06     0.011   15.0   0.0     5    92   147   231   143   244 0.84 Acetohydroxy acid isomeroreductase, catalytic domain
AdoHcyase_NAD        PF00670.16   162 sp|O83080|LDHD_TREPA -            331     0.016   15.0   0.0   1   1   1.7e-05     0.025   14.4   0.0    26   111   149   235   144   265 0.79 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
3HCDH_N              PF02737.13   180 sp|O83080|LDHD_TREPA -            331     0.041   13.5   0.0   1   1   4.8e-05     0.072   12.7   0.0     1    38   148   185   148   233 0.83 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
F420_oxidored        PF03807.12    96 sp|O83080|LDHD_TREPA -            331     0.051   14.0   0.0   1   1   6.7e-05     0.099   13.0   0.0     1    41   148   184   148   229 0.79 NADP oxidoreductase coenzyme F420-dependent
TrkA_N               PF02254.13   116 sp|O83080|LDHD_TREPA -            331     0.096   12.6   0.0   1   1   0.00022      0.33   10.9   0.0     3    35   151   183   149   194 0.84 TrkA-N domain
GTP_EFTU             PF00009.22   188 sp|O83523|LEPA_TREPA -            605   1.1e-51  174.9   0.0   1   1     1e-54   1.7e-51  174.3   0.0     2   187     9   187     8   188 0.93 Elongation factor Tu GTP binding domain
LepA_C               PF06421.7    108 sp|O83523|LEPA_TREPA -            605   1.9e-47  159.6   0.4   1   1   2.3e-50   3.8e-47  158.6   0.4     1   107   494   600   494   601 0.99 GTP-binding protein LepA C-terminus
EFG_C                PF00679.19    89 sp|O83523|LEPA_TREPA -            605   3.5e-17   62.0   0.0   1   1   4.7e-20   7.7e-17   60.9   0.0     2    77   405   481   404   493 0.92 Elongation factor G C-terminus
EFG_II               PF14492.1     75 sp|O83523|LEPA_TREPA -            605     2e-07   30.7   0.0   1   1   7.9e-10   1.3e-06   28.1   0.0     3    72   298   370   297   373 0.89 Elongation Factor G, domain II
GTP_EFTU_D2          PF03144.20    74 sp|O83523|LEPA_TREPA -            605   3.2e-07   30.3   0.8   1   1   4.2e-10   6.8e-07   29.3   0.8     1    74   211   281   211   281 0.92 Elongation factor Tu domain 2
MMR_HSR1             PF01926.18   116 sp|O83523|LEPA_TREPA -            605   3.5e-07   30.1   0.0   1   1   4.2e-10     7e-07   29.2   0.0     3   116    14   138    12   138 0.73 50S ribosome-binding GTPase
Ras                  PF00071.17   162 sp|O83523|LEPA_TREPA -            605    0.0001   21.7   0.0   1   1   1.1e-07   0.00019   20.8   0.0    41   160    70   186    40   188 0.76 Ras family
Miro                 PF08477.8    119 sp|O83523|LEPA_TREPA -            605   0.00038   20.9   0.0   1   1   4.6e-07   0.00076   19.9   0.0     9   103    20   130    12   140 0.71 Miro-like protein
Septin               PF00735.13   281 sp|O83523|LEPA_TREPA -            605     0.015   14.3   0.0   1   2   0.00011      0.18   10.7   0.0     9    76    15    90    11    97 0.75 Septin
LGT                  PF01790.13   256 sp|O83824|LGT_TREPA  -            332   7.7e-73  244.5  11.6   1   1   1.2e-76   8.9e-73  244.3  11.6     2   255    11   318    10   319 0.94 Prolipoprotein diacylglyceryl transferase
DUF368               PF04018.8    257 sp|O83824|LGT_TREPA  -            332    0.0098   15.1   1.9   2   2   3.2e-06     0.024   13.8   0.1    81   167   219   318   205   323 0.76 Domain of unknown function (DUF368)
CN_hydrolase         PF00795.17   186 sp|O83279|LNT1_TREPA -            546   8.4e-10   38.2   0.0   1   1     4e-13     3e-09   36.5   0.0    28   186   265   438   166   438 0.70 Carbon-nitrogen hydrolase
TruB_C               PF09142.6     56 sp|O83279|LNT1_TREPA -            546     0.062   12.9   0.1   1   1   1.9e-05      0.14   11.8   0.1    18    39   464   485   451   485 0.86 tRNA Pseudouridine synthase II, C terminal
CN_hydrolase         PF00795.17   186 sp|O83432|LNT2_TREPA -            559   5.7e-14   51.8   0.0   1   1   1.9e-17   1.4e-13   50.5   0.0     3   186   224   441   222   441 0.72 Carbon-nitrogen hydrolase
DUF2636              PF11120.3     62 sp|O83432|LNT2_TREPA -            559     0.053   13.0   0.1   1   1   2.8e-05      0.21   11.1   0.1     9    34   520   545   498   550 0.92 Protein of unknown function (DUF2636)
ABC_tran             PF00005.22   137 sp|O83590|LOLD_TREPA -            226   3.2e-29  101.9   0.0   1   1   6.9e-32   4.3e-29  101.5   0.0     1   136    25   173    25   174 0.92 ABC transporter
AAA_21               PF13304.1    303 sp|O83590|LOLD_TREPA -            226   1.8e-09   38.0   0.2   1   2   0.00013     0.078   12.9   0.2     3    22    39    58    38    70 0.89 AAA domain
AAA_21               PF13304.1    303 sp|O83590|LOLD_TREPA -            226   1.8e-09   38.0   0.2   2   2   1.1e-07   6.8e-05   22.9   0.0   234   301   143   208   128   210 0.86 AAA domain
AAA_15               PF13175.1    415 sp|O83590|LOLD_TREPA -            226   2.1e-05   23.7   0.0   1   2   0.00031      0.19   10.7   0.0    25    42    37    55    13    87 0.76 AAA ATPase domain
AAA_15               PF13175.1    415 sp|O83590|LOLD_TREPA -            226   2.1e-05   23.7   0.0   2   2   0.00021      0.13   11.3   0.0   372   414   166   208   155   209 0.91 AAA ATPase domain
SMC_N                PF02463.14   220 sp|O83590|LOLD_TREPA -            226   0.00028   20.1   0.1   1   1   7.3e-06    0.0045   16.2   0.1    28   207    39   214    26   222 0.77 RecF/RecN/SMC N terminal domain
DUF258               PF03193.11   161 sp|O83590|LOLD_TREPA -            226   0.00049   19.3   0.0   1   1   1.2e-06   0.00075   18.7   0.0    18    64    17    64     6    79 0.76 Protein of unknown function, DUF258
AAA_29               PF13555.1     62 sp|O83590|LOLD_TREPA -            226    0.0011   18.4   0.0   1   1   3.9e-06    0.0024   17.3   0.0    17    40    30    52    24    55 0.80 P-loop containing region of AAA domain
ArgK                 PF03308.11   267 sp|O83590|LOLD_TREPA -            226    0.0011   17.7   0.0   1   1   2.8e-06    0.0017   17.1   0.0    16    66    22    72     7    75 0.84 ArgK protein
AAA_16               PF13191.1    185 sp|O83590|LOLD_TREPA -            226    0.0012   18.8   0.3   1   1   3.3e-06    0.0021   18.1   0.3    27    84    38    90    22   205 0.65 AAA ATPase domain
IIGP                 PF05049.8    376 sp|O83590|LOLD_TREPA -            226    0.0013   17.6   0.2   1   1   3.5e-06    0.0021   16.9   0.2    34    73    34    68    18    82 0.76 Interferon-inducible GTPase (IIGP)
AAA_17               PF13207.1    121 sp|O83590|LOLD_TREPA -            226    0.0018   19.0   0.0   1   1   4.1e-06    0.0025   18.6   0.0     1    47    37    89    37   162 0.76 AAA domain
MMR_HSR1             PF01926.18   116 sp|O83590|LOLD_TREPA -            226    0.0023   17.8   0.0   1   1   8.3e-06    0.0051   16.7   0.0     1    81    37   137    37   204 0.64 50S ribosome-binding GTPase
AAA_10               PF12846.2    304 sp|O83590|LOLD_TREPA -            226    0.0087   15.5   0.1   1   1   3.7e-05     0.023   14.1   0.1     4    36    38    72    36    95 0.78 AAA-like domain
AAA_22               PF13401.1    131 sp|O83590|LOLD_TREPA -            226     0.015   15.4   0.2   1   1   6.9e-05     0.043   13.9   0.1     7    29    38    60    36   171 0.68 AAA domain
AAA_18               PF13238.1    129 sp|O83590|LOLD_TREPA -            226     0.023   14.9   0.0   1   1   5.6e-05     0.035   14.4   0.0     1    21    38    58    38   132 0.83 AAA domain
NACHT                PF05729.7    166 sp|O83590|LOLD_TREPA -            226     0.024   14.2   0.6   1   2   0.00024      0.15   11.7   0.3     3    18    38    53    37    59 0.90 NACHT domain
AAA_28               PF13521.1    163 sp|O83590|LOLD_TREPA -            226     0.041   13.8   0.3   1   1   0.00025      0.16   11.9   0.0     1    19    37    55    37    89 0.85 AAA domain
AAA_23               PF13476.1    202 sp|O83590|LOLD_TREPA -            226     0.041   14.1   0.1   1   1   9.9e-05     0.061   13.6   0.1    22    39    38    55    26    58 0.89 AAA domain
DAP3                 PF10236.4    309 sp|O83590|LOLD_TREPA -            226     0.047   12.6   0.0   1   1   0.00012     0.073   12.0   0.0    23    41    35    53    18    69 0.88 Mitochondrial ribosomal death-associated protein 3
Miro                 PF08477.8    119 sp|O83590|LOLD_TREPA -            226     0.047   14.1   0.0   1   1   0.00014     0.086   13.3   0.0     1    25    37    61    37    87 0.87 Miro-like protein
Sigma54_activat      PF00158.21   168 sp|O83590|LOLD_TREPA -            226     0.052   13.0   0.0   1   1   0.00017       0.1   12.0   0.0    11    48    24    61    15    82 0.76 Sigma-54 interaction domain
NTPase_1             PF03266.10   168 sp|O83590|LOLD_TREPA -            226     0.062   13.0   0.1   1   1   0.00033       0.2   11.3   0.1     1    18    37    54    37    67 0.88 NTPase
PRK                  PF00485.13   194 sp|O83590|LOLD_TREPA -            226      0.11   12.0   0.0   1   1   0.00023      0.14   11.6   0.0     2    23    38    55    37   145 0.69 Phosphoribulokinase / Uridine kinase family
FeoB_N               PF02421.13   156 sp|O83590|LOLD_TREPA -            226      0.13   11.5   0.0   1   1   0.00035      0.22   10.8   0.0     2    24    37    59    36    63 0.90 Ferrous iron transport protein B
RNA_helicase         PF00910.17   107 sp|O83590|LOLD_TREPA -            226      0.15   12.2   0.0   1   1   0.00066      0.41   10.8   0.0     2    18    39    55    38    88 0.89 RNA helicase
Lon_C                PF05362.8    205 sp|O83536|LON_TREPA  -            881   1.2e-79  266.4   2.3   2   2   5.6e-82   3.6e-79  264.8   0.2     4   203   659   859   656   861 0.95 Lon protease (S16) C-terminal proteolytic domain
LON                  PF02190.11   205 sp|O83536|LON_TREPA  -            881   1.6e-37  129.1   0.2   1   1   4.9e-40   3.2e-37  128.2   0.2     2   205    94   285    93   285 0.92 ATP-dependent protease La (LON) domain
AAA                  PF00004.24   132 sp|O83536|LON_TREPA  -            881   1.6e-19   70.4   0.0   1   1   5.3e-22   3.4e-19   69.3   0.0     1   128   436   574   436   578 0.95 ATPase family associated with various cellular activities (AAA)
ChlI                 PF13541.1    121 sp|O83536|LON_TREPA  -            881   2.9e-09   36.4   0.0   1   1   8.8e-12   5.7e-09   35.5   0.0     1   121   700   828   700   828 0.91 Subunit ChlI of Mg-chelatase
AAA_PrkA             PF08298.6    358 sp|O83536|LON_TREPA  -            881     3e-07   29.4   0.0   1   1   8.4e-10   5.4e-07   28.6   0.0    54   114   399   459   393   472 0.89 PrkA AAA domain
AAA_5                PF07728.9    139 sp|O83536|LON_TREPA  -            881   6.2e-07   29.2   0.0   1   1     4e-09   2.6e-06   27.2   0.0     2    92   436   531   435   570 0.74 AAA domain (dynein-related subfamily)
AAA_2                PF07724.9    171 sp|O83536|LON_TREPA  -            881   1.8e-05   24.7   0.0   1   1     1e-07   6.7e-05   22.8   0.0     5   129   435   558   431   596 0.90 AAA domain (Cdc48 subfamily)
AAA_16               PF13191.1    185 sp|O83536|LON_TREPA  -            881   0.00015   21.8   0.0   1   1   6.7e-07   0.00043   20.3   0.0     2    51   408   460   407   528 0.81 AAA ATPase domain
RuvB_N               PF05496.7    234 sp|O83536|LON_TREPA  -            881   0.00032   19.8   0.0   1   1   1.2e-06   0.00077   18.5   0.0    24    77   406   460   387   477 0.79 Holliday junction DNA helicase ruvB N-terminus
AAA_17               PF13207.1    121 sp|O83536|LON_TREPA  -            881    0.0011   19.7   1.3   1   1   3.8e-06    0.0024   18.6   0.0     1    32   435   468   435   584 0.69 AAA domain
AAA_22               PF13401.1    131 sp|O83536|LON_TREPA  -            881    0.0016   18.5   0.7   1   1   5.4e-05     0.035   14.2   0.1     3    27   432   456   428   529 0.90 AAA domain
AAA_25               PF13481.1    194 sp|O83536|LON_TREPA  -            881      0.01   15.2   0.0   1   1   5.2e-05     0.034   13.5   0.0    32    58   432   458   423   482 0.88 AAA domain
AAA_18               PF13238.1    129 sp|O83536|LON_TREPA  -            881     0.011   16.0   0.1   1   1   1.7e-05     0.011   16.0   0.1     1    22   436   457   436   496 0.83 AAA domain
IstB_IS21            PF01695.12   178 sp|O83536|LON_TREPA  -            881     0.029   13.8   0.0   1   1    0.0001     0.067   12.5   0.0    18    69   402   455   393   461 0.71 IstB-like ATP binding protein
AAA_19               PF13245.1     76 sp|O83536|LON_TREPA  -            881     0.034   13.8   0.1   1   1   0.00013     0.081   12.6   0.1     8    35   429   458   423   481 0.77 Part of AAA domain
RNA_helicase         PF00910.17   107 sp|O83536|LON_TREPA  -            881     0.051   13.7   0.0   1   1   0.00017      0.11   12.6   0.0     1    46   436   493   436   529 0.74 RNA helicase
AAA_24               PF13479.1    213 sp|O83536|LON_TREPA  -            881     0.052   13.1   0.2   1   1     8e-05     0.052   13.1   0.2     2    26   432   456   431   462 0.83 AAA domain
DUF258               PF03193.11   161 sp|O83536|LON_TREPA  -            881     0.055   12.6   0.0   1   1   0.00016      0.11   11.7   0.0    22    59   420   457   399   484 0.76 Protein of unknown function, DUF258
Zeta_toxin           PF06414.7    201 sp|O83536|LON_TREPA  -            881     0.069   12.2   0.0   1   1   0.00021      0.14   11.2   0.0    14    45   431   461   420   466 0.80 Zeta toxin
TIP49                PF06068.8    398 sp|O83536|LON_TREPA  -            881     0.072   11.7   3.3   1   2   0.00067      0.43    9.2   0.0    49    84   432   465   412   476 0.81 TIP49 C-terminus
AAA_3                PF07726.6    131 sp|O83536|LON_TREPA  -            881     0.098   12.2   0.0   1   1   0.00056      0.36   10.4   0.0     2    46   436   480   435   570 0.61 ATPase family associated with various cellular activities (AAA)
ABC_tran             PF00005.22   137 sp|O83536|LON_TREPA  -            881      0.19   12.0   2.0   1   1    0.0007      0.45   10.7   0.1    10    37   432   459   430   502 0.82 ABC transporter
Peptidase_A8         PF01252.13   152 sp|O83943|LSPA_TREPA -            186   1.7e-34  118.6   5.4   1   1   1.4e-38   2.1e-34  118.3   5.4     4   148    18   168    14   173 0.90 Signal peptidase (SPase) II
Peptidase_M24        PF00557.19   207 sp|O83814|MAP1_TREPA -            255   9.9e-44  149.3   0.1   1   1   7.8e-48   1.2e-43  149.1   0.1     2   205    12   237    11   239 0.85 Metallopeptidase family M24
S-AdoMet_synt_C      PF02773.11   138 sp|O83772|METK_TREPA -            396   1.3e-66  222.4   0.1   1   1   4.1e-70     2e-66  221.9   0.1     1   138   237   374   237   374 0.99 S-adenosylmethionine synthetase, C-terminal domain
S-AdoMet_synt_M      PF02772.11   120 sp|O83772|METK_TREPA -            396   9.5e-46  154.6   0.0   1   1   3.4e-49   1.7e-45  153.8   0.0     2   120   117   235   116   235 0.98 S-adenosylmethionine synthetase, central domain
S-AdoMet_synt_N      PF00438.15   100 sp|O83772|METK_TREPA -            396   2.4e-37  127.1   0.2   1   1   9.3e-41   4.6e-37  126.2   0.2     2   100     2   100     1   100 0.98 S-adenosylmethionine synthetase, N-terminal domain
ABC_tran             PF00005.22   137 sp|Q56342|MGLA_TREPA -            496   7.5e-49  165.5   0.0   1   2   3.1e-30   2.3e-27   95.9   0.0     1   137    20   169    20   169 0.87 ABC transporter
ABC_tran             PF00005.22   137 sp|Q56342|MGLA_TREPA -            496   7.5e-49  165.5   0.0   2   2   1.6e-21   1.2e-18   67.7   0.0     1   136   270   424   270   425 0.78 ABC transporter
AAA_21               PF13304.1    303 sp|Q56342|MGLA_TREPA -            496   4.2e-13   49.9   0.0   1   3   7.9e-07   0.00058   19.9   0.0     3    25    34    57    32    80 0.75 AAA domain
AAA_21               PF13304.1    303 sp|Q56342|MGLA_TREPA -            496   4.2e-13   49.9   0.0   2   3   0.00012      0.09   12.7   0.0   234   297   138   198    92   201 0.85 AAA domain
AAA_21               PF13304.1    303 sp|Q56342|MGLA_TREPA -            496   4.2e-13   49.9   0.0   3   3   6.6e-05     0.049   13.6   0.0   234   296   394   453   284   454 0.83 AAA domain
AAA_15               PF13175.1    415 sp|Q56342|MGLA_TREPA -            496   8.7e-06   25.0   0.0   1   3    0.0004       0.3   10.1   0.0    26    46    34    54    12    88 0.77 AAA ATPase domain
ArgK                 PF03308.11   267 sp|Q56342|MGLA_TREPA -            496   2.6e-05   23.1   0.1   1   2   3.8e-06    0.0028   16.4   0.0    16    58    17    60     2    75 0.78 ArgK protein
AAA_10               PF12846.2    304 sp|Q56342|MGLA_TREPA -            496   2.8e-05   23.6   3.6   1   2   0.00014      0.11   11.9   0.2     6    34    35    63    31    72 0.86 AAA-like domain
AAA_10               PF12846.2    304 sp|Q56342|MGLA_TREPA -            496   2.8e-05   23.6   3.6   2   2   0.00013     0.095   12.1   0.3   156   280    97   222    69   225 0.73 AAA-like domain
AAA_29               PF13555.1     62 sp|Q56342|MGLA_TREPA -            496   0.00015   21.2   0.1   1   2   7.8e-06    0.0058   16.1   0.1    15    40    23    47    18    51 0.81 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|Q56342|MGLA_TREPA -            496   0.00024   20.3   0.1   1   2   3.1e-05     0.023   13.8   0.1    33    66    27    61     8    66 0.82 Protein of unknown function, DUF258
AAA_23               PF13476.1    202 sp|Q56342|MGLA_TREPA -            496   0.00029   21.2   0.3   1   2   2.3e-05     0.017   15.4   0.0    21    41    32    52    12    90 0.82 AAA domain
AAA_22               PF13401.1    131 sp|Q56342|MGLA_TREPA -            496   0.00046   20.3   0.5   1   2   2.4e-05     0.018   15.2   0.0     9   121    35   195    27   202 0.66 AAA domain
AAA_16               PF13191.1    185 sp|Q56342|MGLA_TREPA -            496    0.0007   19.6   0.0   1   2   1.8e-05     0.013   15.4   0.0    19    86    25    88    15   194 0.78 AAA ATPase domain
UPF0079              PF02367.12   123 sp|Q56342|MGLA_TREPA -            496   0.00072   19.1   0.1   1   2   0.00013     0.095   12.3   0.0    13    40    28    56    10    98 0.84 Uncharacterised P-loop hydrolase UPF0079
AAA_25               PF13481.1    194 sp|Q56342|MGLA_TREPA -            496   0.00074   18.9   0.0   1   1   2.2e-06    0.0017   17.8   0.0    13    92     8    98     3   198 0.68 AAA domain
SMC_N                PF02463.14   220 sp|Q56342|MGLA_TREPA -            496    0.0021   17.3   3.8   1   2   0.00047      0.35   10.0   1.8    26   200    32   201     8   216 0.63 RecF/RecN/SMC N terminal domain
KAP_NTPase           PF07693.9    325 sp|Q56342|MGLA_TREPA -            496    0.0043   16.1   0.2   1   3   0.00012     0.092   11.7   0.0    17    81    27    89    16   133 0.87 KAP family P-loop domain
MMR_HSR1             PF01926.18   116 sp|Q56342|MGLA_TREPA -            496     0.015   15.2   0.0   1   2    0.0011      0.81    9.6   0.0     2    22    33    53    32    76 0.85 50S ribosome-binding GTPase
AAA_33               PF13671.1    143 sp|Q56342|MGLA_TREPA -            496     0.034   14.0   0.2   1   1    0.0009      0.67    9.8   0.2     2   118    33   178    32   182 0.57 AAA domain
AAA                  PF00004.24   132 sp|Q56342|MGLA_TREPA -            496     0.066   13.4   3.9   1   1   0.00049      0.36   11.0   1.5     3   115    35   203    33   208 0.69 ATPase family associated with various cellular activities (AAA)
Peripla_BP_4         PF13407.1    257 sp|Q08255|MGLB_TREPA -            403   5.7e-25   88.1   0.8   1   2   2.7e-28     2e-24   86.3   0.7    83   256    40   260    34   261 0.86 Periplasmic binding protein domain
Peripla_BP_3         PF13377.1    160 sp|Q08255|MGLB_TREPA -            403    0.0012   18.8   0.0   1   1   4.5e-07    0.0033   17.4   0.0    62   142   177   261   102   271 0.70 Periplasmic binding protein-like domain
BPD_transp_2         PF02653.11   267 sp|Q57321|MGLC_TREPA -            531   3.3e-33  114.7  37.8   2   2   2.2e-37   3.3e-33  114.7  37.8     1   267   227   520   227   520 0.91 Branched-chain amino acid transport system / permease component
IPPT                 PF01715.12   253 sp|O83644|MIAA_TREPA -            316   1.1e-40  139.2   0.1   1   1     1e-43   1.4e-40  138.9   0.1     2   246    55   298    54   308 0.92 IPP transferase
IPT                  PF01745.11   233 sp|O83644|MIAA_TREPA -            316   2.5e-07   30.1   0.1   1   1   4.2e-10   5.7e-07   28.9   0.1     5    48    24    67    20    70 0.93 Isopentenyl transferase
AAA_33               PF13671.1    143 sp|O83644|MIAA_TREPA -            316    0.0012   18.7   0.2   1   1   6.3e-06    0.0085   15.9   0.0     3    78    24   117    22   240 0.70 AAA domain
AAA_17               PF13207.1    121 sp|O83644|MIAA_TREPA -            316    0.0014   19.4   0.2   1   1   2.9e-06    0.0039   17.9   0.2     4    41    25    63    23   304 0.81 AAA domain
IstB_IS21            PF01695.12   178 sp|O83644|MIAA_TREPA -            316     0.021   14.2   0.0   1   1   3.8e-05     0.051   12.9   0.0    46    70    19    43    15    52 0.91 IstB-like ATP binding protein
PhoH                 PF02562.11   205 sp|O83644|MIAA_TREPA -            316     0.054   12.7   0.0   1   1   7.1e-05     0.096   11.9   0.0    18    42    19    43    10    69 0.90 PhoH-like protein
AAA_16               PF13191.1    185 sp|O83644|MIAA_TREPA -            316     0.058   13.3   0.2   1   1   0.00014      0.19   11.7   0.0    21    59    17    52     6    74 0.82 AAA ATPase domain
AAA_22               PF13401.1    131 sp|O83644|MIAA_TREPA -            316     0.063   13.4   0.1   1   1   0.00016      0.22   11.6   0.0     3    39    19    54    16    82 0.79 AAA domain
AAA_28               PF13521.1    163 sp|O83644|MIAA_TREPA -            316     0.071   13.0   0.8   1   1   0.00014      0.19   11.6   0.2     3    36    24    58    22    96 0.83 AAA domain
AAA                  PF00004.24   132 sp|O83644|MIAA_TREPA -            316      0.13   12.4   0.0   1   1   0.00023      0.32   11.2   0.0     2    33    24    55    23    73 0.86 ATPase family associated with various cellular activities (AAA)
TIP49                PF06068.8    398 sp|O83644|MIAA_TREPA -            316      0.14   10.8   0.0   1   1   0.00015       0.2   10.3   0.0    52    75    22    45     9    58 0.85 TIP49 C-terminus
Radical_SAM          PF04055.16   166 sp|O83735|MIAB_TREPA -            456   3.3e-32  111.9   0.0   1   1   1.1e-35   5.3e-32  111.2   0.0     1   165   156   333   156   334 0.93 Radical SAM superfamily
UPF0004              PF00919.15    98 sp|O83735|MIAB_TREPA -            456   2.9e-25   87.9   0.0   1   1     1e-28   5.1e-25   87.1   0.0     2    98     3   100     2   100 0.96 Uncharacterized protein family UPF0004
TRAM                 PF01938.15    61 sp|O83735|MIAB_TREPA -            456   2.2e-15   56.1   0.1   1   1   9.9e-19   4.9e-15   55.0   0.1     2    61   388   451   387   451 0.97 TRAM domain
TrmE_N               PF10396.4    114 sp|O83561|MNME_TREPA -            495   7.8e-31  106.4   0.3   1   1   7.1e-34   1.7e-30  105.2   0.3     2   114    12   128    11   128 0.90 GTP-binding protein TrmE N-terminus
MMR_HSR1             PF01926.18   116 sp|O83561|MNME_TREPA -            495   6.2e-17   61.6   0.0   1   1   5.5e-20   1.4e-16   60.5   0.0     2   115   226   336   225   337 0.84 50S ribosome-binding GTPase
GTPase_Cys_C         PF12631.2     73 sp|O83561|MNME_TREPA -            495   1.2e-12   47.9   2.3   1   1   6.2e-16   1.5e-12   47.7   0.1     6    73   425   492   421   492 0.95 Catalytic cysteine-containing C-terminus of GTPase, MnmE
FeoB_N               PF02421.13   156 sp|O83561|MNME_TREPA -            495   5.5e-07   28.9   0.0   1   1     4e-10   9.8e-07   28.1   0.0     2   121   225   344   224   372 0.78 Ferrous iron transport protein B
Dynamin_N            PF00350.18   168 sp|O83561|MNME_TREPA -            495   0.00072   19.4   0.0   1   2   1.4e-06    0.0034   17.2   0.0     1    34   226   259   226   266 0.87 Dynamin family
Zeta_toxin           PF06414.7    201 sp|O83561|MNME_TREPA -            495      0.13   11.3   0.0   1   1    0.0001      0.25   10.4   0.0    17    38   224   245   214   252 0.84 Zeta toxin
GIDA                 PF01134.17   392 sp|O83084|MNMG_TREPA -            630  1.2e-148  495.2   0.1   1   1  1.3e-151  1.7e-148  494.6   0.1     1   390     9   406     9   408 0.99 Glucose inhibited division protein A
GIDA_assoc_3         PF13932.1     72 sp|O83084|MNMG_TREPA -            630   2.8e-26   91.3   0.1   1   1   7.1e-29   9.6e-26   89.6   0.1     1    71   555   625   555   626 0.98 GidA associated domain 3
FAD_oxidored         PF12831.2    428 sp|O83084|MNMG_TREPA -            630   6.5e-07   28.7   0.9   1   1   4.8e-10   6.5e-07   28.7   0.9     1    31     9    39     9   166 0.88 FAD dependent oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|O83084|MNMG_TREPA -            630   2.4e-06   27.5   3.3   1   2   2.5e-09   3.4e-06   27.0   0.6     1   119     9   166     9   170 0.75 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|O83084|MNMG_TREPA -            630   5.5e-05   23.3   0.1   2   3   0.00047      0.63   10.0   0.0    85   143   109   174    65   196 0.64 Pyridine nucleotide-disulphide oxidoreductase
FAD_binding_2        PF00890.19   417 sp|O83084|MNMG_TREPA -            630   7.2e-05   21.7   8.7   1   3   1.6e-07   0.00021   20.2   1.6     1    31     9    39     9    48 0.95 FAD binding domain
DAO                  PF01266.19   358 sp|O83084|MNMG_TREPA -            630   0.00092   18.2   5.9   1   2   0.00012      0.16   10.8   1.5     1    29     9    37     9    45 0.92 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|O83084|MNMG_TREPA -            630   0.00092   18.2   5.9   2   2    0.0004      0.54    9.0   0.2   163   202   120   168    99   171 0.81 FAD dependent oxidoreductase
Pyr_redox            PF00070.22    80 sp|O83084|MNMG_TREPA -            630     0.017   15.5   3.1   1   2   3.9e-05     0.053   13.9   0.5     2    29    10    37     9    46 0.90 Pyridine nucleotide-disulphide oxidoreductase
HI0933_like          PF03486.9    409 sp|O83084|MNMG_TREPA -            630     0.021   13.3   0.5   1   1   1.5e-05     0.021   13.3   0.5     1    31     8    38     8    47 0.89 HI0933-like protein
NAD_binding_9        PF13454.1    156 sp|O83084|MNMG_TREPA -            630     0.073   12.8   0.3   1   1   5.4e-05     0.073   12.8   0.3    92   155    96   167    79   168 0.72 FAD-NAD(P)-binding
MotA_ExbB            PF01618.11   139 sp|O07886|MOTA_TREPA -            259   2.2e-13   49.9   0.0   2   2   4.5e-17   2.2e-13   49.9   0.0     3   112    91   194    89   222 0.89 MotA/TolQ/ExbB proton channel family
DUF1345              PF07077.6    181 sp|O07886|MOTA_TREPA -            259     0.044   13.3   0.4   2   2   7.3e-05      0.36   10.3   0.1    57   111   157   211   125   234 0.80 Protein of unknown function (DUF1345)
DUF4149              PF13664.1    101 sp|O07886|MOTA_TREPA -            259     0.068   13.2   0.1   2   2   1.4e-05     0.068   13.2   0.1    37    99   151   210   146   212 0.84 Domain of unknown function (DUF4149)
OmpA                 PF00691.15    97 sp|O07887|MOTB_TREPA -            238   2.1e-16   60.0   0.1   1   1     1e-19     5e-16   58.8   0.0     1    97   124   226   124   226 0.90 OmpA family
MotB_plug            PF13677.1     58 sp|O07887|MOTB_TREPA -            238   1.9e-13   49.4   0.0   1   1   7.5e-17   3.7e-13   48.5   0.0     1    53     1    51     1    55 0.86 Membrane MotB of proton-channel complex MotA/MotB
Glycos_transf_4      PF00953.16   159 sp|O83365|MRAY_TREPA -            363   2.8e-25   88.9  17.0   2   2   3.8e-29   2.8e-25   88.9  17.0     3   158   105   283   103   284 0.88 Glycosyl transferase family 4
Holin_BlyA           PF05102.7     61 sp|O83365|MRAY_TREPA -            363     0.029   14.1   1.5   1   1   3.8e-06     0.029   14.1   1.5    23    48    84   109    81   111 0.94 holin, BlyA family
MraZ                 PF02381.13    72 sp|O83398|MRAZ_TREPA -            149   1.3e-48  162.5   0.1   1   2     3e-27   4.5e-23   80.8   0.0     2    71     6    76     5    77 0.97 MraZ protein
MraZ                 PF02381.13    72 sp|O83398|MRAZ_TREPA -            149   1.3e-48  162.5   0.1   2   2   4.2e-27   6.2e-23   80.3   0.0     2    70    79   146    78   148 0.95 MraZ protein
PMSR                 PF01625.16   156 sp|O83641|MSRAB_TREPA -            291     4e-65  218.4   0.0   1   1   7.9e-69   5.9e-65  217.9   0.0     2   154   128   281   127   283 0.99 Peptide methionine sulfoxide reductase
SelR                 PF01641.13   124 sp|O83641|MSRAB_TREPA -            291     3e-51  172.2   0.0   1   1   8.5e-55   6.3e-51  171.2   0.0     6   123     6   123     2   124 0.98 SelR domain
Radical_SAM          PF04055.16   166 sp|O83293|MTAB_TREPA -            482   1.2e-23   84.1   0.0   1   1   2.4e-27   1.8e-23   83.5   0.0     1   163   207   372   207   375 0.91 Radical SAM superfamily
UPF0004              PF00919.15    98 sp|O83293|MTAB_TREPA -            482   5.2e-17   61.4   0.0   1   1   1.8e-20   1.3e-16   60.1   0.0     2    93     4    97     3   102 0.89 Uncharacterized protein family UPF0004
PNP_UDP_1            PF01048.15   234 sp|P96122|MTNN_TREPA -            269   1.3e-48  165.0   3.4   1   1   2.1e-52   1.6e-48  164.7   3.4     2   233     3   249     2   250 0.88 Phosphorylase superfamily
EPSP_synthase        PF00275.15   419 sp|O54312|MURA_TREPA -            425   6.4e-64  215.9   0.0   1   1   9.8e-68   7.2e-64  215.7   0.0     2   419     7   414     6   414 0.90 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
HupE_UreJ            PF04955.7    180 sp|O54312|MURA_TREPA -            425     0.028   13.7   1.8   1   1     1e-05     0.077   12.2   1.8    47   103   132   188   126   270 0.85 HupE / UreJ protein
MurB_C               PF02873.11   105 sp|O83128|MURB_TREPA -            354   1.6e-35  121.0   0.0   1   1   3.6e-39   2.7e-35  120.2   0.0     2   104   239   341   238   342 0.98 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
FAD_binding_4        PF01565.18   139 sp|O83128|MURB_TREPA -            354   2.2e-16   59.5   0.0   1   1     5e-20   3.7e-16   58.8   0.0     3   127    32   153    30   156 0.90 FAD binding domain
Mur_ligase_C         PF02875.16    91 sp|O83361|MURC_TREPA -            481   1.4e-21   76.2   0.1   2   3   6.5e-24   2.4e-20   72.3   0.0     2    86   332   413   331   418 0.95 Mur ligase family, glutamate ligase domain
Mur_ligase_M         PF08245.7    188 sp|O83361|MURC_TREPA -            481   1.7e-17   64.0   0.0   1   1   6.8e-21   2.5e-17   63.5   0.0     1   188   120   302   120   302 0.81 Mur ligase middle domain
Mur_ligase           PF01225.20    83 sp|O83361|MURC_TREPA -            481   2.6e-13   49.8   0.0   1   1   1.7e-16   6.5e-13   48.5   0.0     1    80    14   113    14   116 0.91 Mur ligase family, catalytic domain
Mur_ligase_M         PF08245.7    188 sp|O83873|MURD_TREPA -            532   3.3e-20   72.9   0.0   1   1   1.6e-23   5.7e-20   72.1   0.0     1   141   122   275   122   332 0.83 Mur ligase middle domain
Mur_ligase_C         PF02875.16    91 sp|O83873|MURD_TREPA -            532   5.5e-07   29.5   0.0   1   2   8.2e-10     3e-06   27.1   0.0     2    79   392   460   391   470 0.79 Mur ligase family, glutamate ligase domain
AdoHcyase_NAD        PF00670.16   162 sp|O83873|MURD_TREPA -            532    0.0038   17.0   0.1   1   1   1.9e-06     0.007   16.2   0.1    19    61     6    50     1    58 0.84 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
3HCDH_N              PF02737.13   180 sp|O83873|MURD_TREPA -            532      0.17   11.4   0.0   1   1   7.6e-05      0.28   10.8   0.0     1    44    12    58    12    84 0.78 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Mur_ligase_M         PF08245.7    188 sp|O83903|MURE_TREPA -            540   2.4e-30  106.0   0.0   1   1   1.2e-33   4.4e-30  105.1   0.0     1   187   112   349   112   350 0.85 Mur ligase middle domain
Mur_ligase_C         PF02875.16    91 sp|O83903|MURE_TREPA -            540   6.5e-17   61.3   0.1   1   1     1e-19   3.8e-16   58.8   0.0     2    88   372   457   371   460 0.92 Mur ligase family, glutamate ligase domain
Mur_ligase           PF01225.20    83 sp|O83903|MURE_TREPA -            540   1.9e-11   43.8   0.5   1   2   4.3e-14   1.6e-10   40.9   0.2     2    83    26   100    25   100 0.95 Mur ligase family, catalytic domain
AAA_31               PF13614.1    157 sp|O83903|MURE_TREPA -            540      0.14   12.0   0.0   1   1   6.7e-05      0.25   11.2   0.0     2    66   106   175   105   193 0.84 AAA domain
Mur_ligase_M         PF08245.7    188 sp|O83401|MURF_TREPA -            459   1.9e-35  122.6   0.0   1   1   5.9e-39   2.9e-35  122.0   0.0     1   188   119   299   119   299 0.89 Mur ligase middle domain
Mur_ligase_C         PF02875.16    91 sp|O83401|MURF_TREPA -            459   4.5e-15   55.4   0.0   1   1   3.4e-18   1.7e-14   53.6   0.0     3    80   321   397   319   404 0.93 Mur ligase family, glutamate ligase domain
Mur_ligase           PF01225.20    83 sp|O83401|MURF_TREPA -            459   2.7e-14   52.9   0.0   1   1   1.4e-17   6.7e-14   51.7   0.0     3    82    27   107    25   108 0.89 Mur ligase family, catalytic domain
Glyco_tran_28_C      PF04101.11   167 sp|O83535|MURG_TREPA -            384     1e-34  119.6   0.0   1   1   5.8e-38   1.4e-34  119.1   0.0     2   166   203   375   202   376 0.92 Glycosyltransferase family 28 C-terminal domain
Glyco_transf_28      PF03033.15   139 sp|O83535|MURG_TREPA -            384   2.6e-31  108.2   0.2   1   1   1.6e-34   4.1e-31  107.6   0.2     1   139    15   154    15   154 0.98 Glycosyltransferase family 28 N-terminal domain
Glyco_trans_1_3      PF13528.1    318 sp|O83535|MURG_TREPA -            384   2.8e-09   36.6   0.0   1   1   2.1e-12   5.1e-09   35.7   0.0    12   314    23   342    14   345 0.75 Glycosyl transferase family 1
Alg14                PF08660.6    170 sp|O83535|MURG_TREPA -            384   1.5e-05   25.0   0.0   1   1   1.4e-08   3.5e-05   23.8   0.0     6   165    21   167    14   171 0.84 Oligosaccharide biosynthesis protein Alg14 like
UDPGT                PF00201.13   500 sp|O83535|MURG_TREPA -            384    0.0045   15.5   0.0   1   1   2.9e-06    0.0073   14.9   0.0   347   394   281   333   272   351 0.82 UDP-glucoronosyl and UDP-glucosyl transferase
LpxB                 PF02684.10   373 sp|O83535|MURG_TREPA -            384       0.2   10.2   0.0   1   1   0.00013      0.32    9.5   0.0   131   284   146   300   141   302 0.69 Lipid-A-disaccharide synthetase
Asp_Glu_race         PF01177.17   216 sp|O83421|MURI_TREPA -            268     1e-25   90.9   0.7   1   1   1.6e-29   1.2e-25   90.6   0.7     4   215    13   221    10   222 0.79 Asp/Glu/Hydantoin racemase
DUF3565              PF12088.3     61 sp|O83421|MURI_TREPA -            268      0.74    9.6   4.0   2   2   5.7e-05      0.42   10.4   0.4    12    25   185   198   179   200 0.88 Protein of unknown function (DUF3565)
MVIN                 PF03023.9    452 sp|O83529|MURJ_TREPA -            526  1.9e-144  481.4  47.5   1   1  3.1e-148  2.3e-144  481.2  47.5     2   451    33   488    32   489 0.98 MviN-like protein
Polysacc_synt_C      PF14667.1    146 sp|O83529|MURJ_TREPA -            526   6.2e-08   32.5  14.3   3   3   8.3e-12   6.2e-08   32.5  14.3     2   143   360   509   359   512 0.82 Polysaccharide biosynthesis C-terminal domain
MutL_C               PF08676.6    144 sp|O83325|MUTL_TREPA -            620   1.7e-31  108.7   0.0   1   1   7.8e-35   2.9e-31  108.0   0.0     3   142   443   576   441   578 0.95 MutL C terminal dimerisation domain
DNA_mis_repair       PF01119.14   119 sp|O83325|MUTL_TREPA -            620   3.6e-22   78.0   0.0   1   1   2.1e-25   7.7e-22   76.9   0.0    16   118   242   344   237   345 0.94 DNA mismatch repair protein, C-terminal domain
HATPase_c            PF02518.21   111 sp|O83325|MUTL_TREPA -            620   4.3e-12   45.7   0.0   1   1   2.1e-15   7.9e-12   44.8   0.0     2   106    25   164    24   169 0.77 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3          PF13589.1    137 sp|O83325|MUTL_TREPA -            620   1.8e-10   40.5   0.0   1   1   7.8e-14   2.9e-10   39.9   0.0     4    96    30   122    26   136 0.84 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
MutS_V               PF00488.16   235 sp|O83348|MUTS_TREPA -            900   4.8e-96  320.7   0.0   1   1   3.4e-99   8.4e-96  319.9   0.0     1   234   573   808   573   809 0.98 MutS domain V
MutS_III             PF05192.13   204 sp|O83348|MUTS_TREPA -            900   1.8e-40  138.9   5.3   1   1   7.4e-44   1.8e-40  138.9   5.3     2   204   273   566   272   566 0.95 MutS domain III
MutS_I               PF01624.15   113 sp|O83348|MUTS_TREPA -            900   9.9e-36  122.2   0.0   1   1   8.6e-39   2.1e-35  121.1   0.0     1   112     8   113     8   114 0.96 MutS domain I
MutS_IV              PF05190.13    92 sp|O83348|MUTS_TREPA -            900   3.4e-25   88.0   0.0   1   1   2.8e-28   6.9e-25   87.0   0.0     1    91   434   524   434   525 0.98 MutS family domain IV
MutS_II              PF05188.12   137 sp|O83348|MUTS_TREPA -            900   5.4e-23   81.5   0.0   1   1   5.2e-26   1.3e-22   80.3   0.0     1   136   122   256   122   257 0.91 MutS domain II
AAA_29               PF13555.1     62 sp|O83348|MUTS_TREPA -            900     0.092   12.2   0.0   1   1   7.5e-05      0.18   11.3   0.0    25    40   621   636   606   650 0.82 P-loop containing region of AAA domain
CTP_transf_2         PF01467.21   157 sp|O83723|NADD_TREPA -            204   6.4e-35  120.5   0.0   1   1     5e-39   7.4e-35  120.3   0.0     1   156     5   176     5   177 0.95 Cytidylyltransferase
NAD_synthase         PF02540.12   242 sp|O83759|NADE_TREPA -            679   4.8e-25   87.8   0.0   1   1   1.5e-28   7.6e-25   87.2   0.0    12   173   364   533   354   541 0.92 NAD synthase
Asn_synthase         PF00733.16   255 sp|O83759|NADE_TREPA -            679     0.053   13.0   0.0   1   1   1.8e-05     0.089   12.2   0.0    12   101   365   459   357   492 0.76 Asparagine synthase
CN_hydrolase         PF00795.17   186 sp|O83759|NADE_TREPA -            679     0.075   12.3   0.0   1   1   3.1e-05      0.15   11.3   0.0     8    67    19    75    13   156 0.81 Carbon-nitrogen hydrolase
NAD_kinase           PF01513.16   285 sp|O83455|NADK_TREPA -            305   5.1e-49  166.5   0.0   1   1   4.4e-53   6.6e-49  166.2   0.0    73   283    63   274    19   275 0.95 ATP-NAD kinase
NDK                  PF00334.14   135 sp|O83974|NDK_TREPA  -            149   1.1e-49  167.7   0.0   1   1   8.2e-54   1.2e-49  167.5   0.0     1   134     4   137     4   138 0.99 Nucleoside diphosphate kinase
Ham1p_like           PF01725.11   189 sp|O83452|NTPA_TREPA -            269   5.6e-56  188.9   0.0   1   1   4.6e-60   6.8e-56  188.6   0.0     1   188    18   204    18   205 0.94 Ham1 family
NusB                 PF01029.13   134 sp|O83979|NUSB_TREPA -            141   6.9e-35  119.9   0.0   1   1   5.3e-39   7.9e-35  119.7   0.0     1   134    11   139    11   139 0.90 NusB family
NusG                 PF02357.14    92 sp|O83264|NUSG_TREPA -            185   2.5e-20   72.4   0.0   1   1   5.9e-24   4.4e-20   71.7   0.0     1    91     3   107     3   108 0.87 Transcription termination factor nusG
KOW                  PF00467.24    32 sp|O83264|NUSG_TREPA -            185     7e-05   22.3   2.3   2   2     1e-08   7.6e-05   22.2   0.2     1    30   134   163   134   169 0.88 KOW motif
GTP1_OBG             PF01018.17   156 sp|O83724|OBG_TREPA  -            376   3.2e-53  179.5   3.3   1   1   1.6e-56   4.7e-53  179.0   3.3     1   155     4   159     4   160 0.97 GTP1/OBG
MMR_HSR1             PF01926.18   116 sp|O83724|OBG_TREPA  -            376   2.6e-19   69.2   0.0   1   1   1.3e-22   3.8e-19   68.7   0.0     1   104   163   265   163   285 0.81 50S ribosome-binding GTPase
FeoB_N               PF02421.13   156 sp|O83724|OBG_TREPA  -            376   1.6e-06   27.4   0.0   1   1   8.8e-10   2.6e-06   26.7   0.0     3    58   164   220   162   236 0.92 Ferrous iron transport protein B
Miro                 PF08477.8    119 sp|O83724|OBG_TREPA  -            376   0.00043   20.7   0.0   1   1   3.1e-07   0.00092   19.6   0.0     4   119   166   285   164   285 0.74 Miro-like protein
DUF3602              PF12223.3     81 sp|O83724|OBG_TREPA  -            376     0.023   15.0   0.0   2   2   7.7e-06     0.023   15.0   0.0    31    53   120   144    99   159 0.73 Protein of unknown function (DUF3602)
P5CR_dimer           PF14748.1    107 sp|P27771|P5CR_TREPA -            263   6.6e-31  106.5   1.7   2   2   3.5e-34   6.6e-31  106.5   1.7     5   101   164   260   160   263 0.95 Pyrroline-5-carboxylate reductase dimerisation
F420_oxidored        PF03807.12    96 sp|P27771|P5CR_TREPA -            263   3.6e-21   75.3   1.6   1   2   4.4e-24   8.2e-21   74.2   0.1     2    96     3    95     2    95 0.98 NADP oxidoreductase coenzyme F420-dependent
NAD_binding_2        PF03446.10   163 sp|P27771|P5CR_TREPA -            263   1.9e-07   31.0   0.1   1   2   3.5e-10   6.5e-07   29.3   0.1     2    76     1    79     1   102 0.82 NAD binding domain of 6-phosphogluconate dehydrogenase
2-Hacid_dh_C         PF02826.14   178 sp|P27771|P5CR_TREPA -            263    0.0012   18.0   0.0   1   1     1e-06    0.0019   17.3   0.0    38   114     2    84     1   107 0.80 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
NAD_Gly3P_dh_N       PF01210.18   157 sp|P27771|P5CR_TREPA -            263    0.0088   15.7   1.6   1   1   7.2e-05      0.13   11.9   1.6     2   106     3    96     2   135 0.78 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
GFO_IDH_MocA         PF01408.17   120 sp|P27771|P5CR_TREPA -            263      0.01   16.3   0.0   1   1   1.4e-05     0.025   15.0   0.0     1    74     1    73     1    90 0.81 Oxidoreductase family, NAD-binding Rossmann fold
PDH                  PF02153.12   258 sp|P27771|P5CR_TREPA -            263     0.033   13.0   1.3   1   2   4.6e-05     0.086   11.7   0.0     8    67    28    83    21    96 0.76 Prephenate dehydrogenase
DUF1949              PF09186.6     56 sp|P27771|P5CR_TREPA -            263      0.07   12.7   0.1   1   1   7.6e-05      0.14   11.7   0.1     5    52   141   189   138   190 0.88 Domain of unknown function (DUF1949)
ParBc                PF02195.13    90 sp|O83295|PARB_TREPA -            324   8.5e-24   83.4   0.2   1   1   1.1e-26   1.7e-23   82.5   0.2     2    90    34   123    33   123 0.97 ParB-like nuclease domain
KorB                 PF08535.5     93 sp|O83295|PARB_TREPA -            324    0.0017   18.4   0.0   1   1   3.1e-06    0.0046   17.0   0.0     4    42   146   184   144   208 0.87 KorB domain
TrmB                 PF01978.14    68 sp|O83295|PARB_TREPA -            324    0.0021   17.7   0.0   1   1   3.1e-06    0.0046   16.6   0.0    10    46   133   169   130   177 0.95 Sugar-specific transcriptional regulator TrmB
HTH_24               PF13412.1     48 sp|O83295|PARB_TREPA -            324    0.0067   15.7   1.1   1   2     2e-05     0.029   13.7   0.1    11    41   139   169   135   170 0.89 Winged helix-turn-helix DNA-binding
HTH_Crp_2            PF13545.1     76 sp|O83295|PARB_TREPA -            324     0.012   15.4   0.2   1   1   4.4e-05     0.065   13.0   0.0    25    53   141   170   118   172 0.84 Crp-like helix-turn-helix domain
HTH_CodY             PF08222.6     61 sp|O83295|PARB_TREPA -            324     0.019   14.3   0.0   1   1   2.4e-05     0.035   13.4   0.0     3    28   144   169   142   184 0.90 CodY helix-turn-helix domain
HTH_38               PF13936.1     44 sp|O83295|PARB_TREPA -            324     0.024   14.1   0.0   1   1   4.4e-05     0.065   12.8   0.0    20    42   145   167   135   167 0.89 Helix-turn-helix domain
HTH_3                PF01381.17    55 sp|O83295|PARB_TREPA -            324     0.026   14.3   0.0   1   1   6.3e-05     0.093   12.5   0.0     7    28   143   164   139   172 0.89 Helix-turn-helix
GntR                 PF00392.16    64 sp|O83295|PARB_TREPA -            324     0.047   13.1   0.0   1   1   0.00017      0.25   10.8   0.0    24    49   146   170   138   171 0.91 Bacterial regulatory proteins, gntR family
PEPCK                PF00821.13   587 sp|O83159|PCKG_TREPA -            618  2.1e-275  914.4   0.0   1   1  1.7e-279  2.5e-275  914.2   0.0     1   585    13   606    13   608 0.97 Phosphoenolpyruvate carboxykinase
Phos_pyr_kin         PF08543.7    246 sp|O83153|PDXK_TREPA -            269   1.2e-73  247.3   0.0   1   1   1.8e-77   1.4e-73  247.1   0.0     1   244    11   258    11   260 0.96 Phosphomethylpyrimidine kinase
PfkB                 PF00294.19   301 sp|O83153|PDXK_TREPA -            269   0.00015   20.9   0.1   1   1   2.5e-08   0.00019   20.6   0.1   173   277   123   234    52   241 0.73 pfkB family carbohydrate kinase
PFK                  PF00365.15   282 sp|O83146|PFKA_TREPA -            461   8.8e-33  113.4   0.9   1   1   1.1e-36   1.7e-32  112.5   0.9     4   227    84   317    82   337 0.86 Phosphofructokinase
PFK                  PF00365.15   282 sp|O83553|PFP_TREPA  -            573   1.9e-24   86.1   0.8   1   1   1.8e-28   2.7e-24   85.5   0.8     2   232    82   330    81   349 0.82 Phosphofructokinase
PGK                  PF00162.14   384 sp|O83549|PGK_TREPA  -            419  5.5e-145  482.7   0.0   1   1  8.3e-149  6.2e-145  482.5   0.0     1   384     5   409     5   409 0.98 Phosphoglycerate kinase
DNA_ligase_IV        PF11411.3     36 sp|O83549|PGK_TREPA  -            419      0.12   12.1   0.0   1   1   3.2e-05      0.24   11.1   0.0     4    21   151   168   149   171 0.94 DNA ligase IV
CDP-OH_P_transf      PF01066.16   101 sp|O66076|PGSA_TREPA -            216   1.2e-10   41.5  11.3   1   1   1.9e-14   2.8e-10   40.3  11.3     7    92     6   105     3   197 0.86 CDP-alcohol phosphatidyltransferase
RNase_PH             PF01138.16   132 sp|O83856|PNP_TREPA  -            702   3.5e-41  140.5   0.0   1   2     3e-21   5.5e-18   65.5   0.0     5   132    14   142    12   142 0.94 3' exoribonuclease family, domain 1
RNase_PH             PF01138.16   132 sp|O83856|PNP_TREPA  -            702   3.5e-41  140.5   0.0   2   2   1.7e-23   3.1e-20   72.8   0.0     2   132   323   454   322   454 0.92 3' exoribonuclease family, domain 1
RNase_PH_C           PF03725.10    68 sp|O83856|PNP_TREPA  -            702   9.3e-24   83.1   1.3   1   2   2.5e-17   4.6e-14   52.1   0.0     1    67   145   208   145   209 0.96 3' exoribonuclease family, domain 2
RNase_PH_C           PF03725.10    68 sp|O83856|PNP_TREPA  -            702   9.3e-24   83.1   1.3   2   2   2.4e-10   4.4e-07   29.7   0.2     1    66   457   525   457   527 0.95 3' exoribonuclease family, domain 2
PNPase               PF03726.9     83 sp|O83856|PNP_TREPA  -            702   1.8e-20   72.9   0.3   1   1   2.2e-23   4.1e-20   71.8   0.3     4    82   242   318   241   319 0.96 Polyribonucleotide nucleotidyltransferase, RNA binding domain
S1                   PF00575.18    74 sp|O83856|PNP_TREPA  -            702   3.1e-17   62.4   0.2   1   1   3.8e-20   7.1e-17   61.2   0.2     2    72   617   686   616   688 0.95 S1 RNA binding domain
KH_1                 PF00013.24    60 sp|O83856|PNP_TREPA  -            702     1e-10   41.0   0.1   1   1   1.6e-13   2.9e-10   39.6   0.1     2    58   554   608   553   610 0.92 KH domain
KH_3                 PF13014.1     43 sp|O83856|PNP_TREPA  -            702   3.8e-05   23.2   0.1   1   1   5.7e-08   0.00011   21.8   0.1     1    43   562   597   562   597 0.93 KH domain
KH_5                 PF13184.1     69 sp|O83856|PNP_TREPA  -            702     0.016   15.0   0.5   1   1     3e-05     0.056   13.2   0.1     6    52   557   618   553   620 0.91 NusA-like KH domain
KH_2                 PF07650.12    78 sp|O83856|PNP_TREPA  -            702     0.023   14.2   0.0   1   1   2.7e-05     0.051   13.1   0.0    17    66   543   593   530   600 0.81 KH domain
ABC_tran             PF00005.22   137 sp|O83658|POTA_TREPA -            379   2.3e-32  112.1   0.0   1   1   5.6e-35   3.7e-32  111.4   0.0     2   136    26   167    25   168 0.88 ABC transporter
TOBE_2               PF08402.5     75 sp|O83658|POTA_TREPA -            379   1.3e-12   47.5   0.0   1   1   5.1e-15   3.5e-12   46.1   0.0     3    74   292   373   290   374 0.89 TOBE domain
AAA_21               PF13304.1    303 sp|O83658|POTA_TREPA -            379   6.7e-12   45.9   1.8   1   2   2.6e-05     0.018   15.0   0.0     3    22    39    58    37    87 0.83 AAA domain
AAA_21               PF13304.1    303 sp|O83658|POTA_TREPA -            379   6.7e-12   45.9   1.8   2   2     6e-10     4e-07   30.2   0.5   177   298   104   199    78   205 0.77 AAA domain
AAA_22               PF13401.1    131 sp|O83658|POTA_TREPA -            379     6e-06   26.4   0.1   1   1     1e-07   6.8e-05   23.0   0.1     3   124    34   198    32   204 0.65 AAA domain
AAA_16               PF13191.1    185 sp|O83658|POTA_TREPA -            379   0.00029   20.8   0.4   1   1   9.4e-07   0.00064   19.7   0.4    20   131    31   146    22   208 0.55 AAA ATPase domain
AAA                  PF00004.24   132 sp|O83658|POTA_TREPA -            379     0.001   19.2   0.4   1   1   3.8e-05     0.026   14.7   0.3     3   110    40   198    38   215 0.50 ATPase family associated with various cellular activities (AAA)
SMC_N                PF02463.14   220 sp|O83658|POTA_TREPA -            379    0.0014   17.8   0.1   2   2   0.00048      0.32   10.1   0.0   121   206   124   207    83   219 0.70 RecF/RecN/SMC N terminal domain
NACHT                PF05729.7    166 sp|O83658|POTA_TREPA -            379     0.005   16.5   0.1   1   1   3.2e-05     0.021   14.4   0.0     5    51    40    85    37   101 0.77 NACHT domain
AAA_25               PF13481.1    194 sp|O83658|POTA_TREPA -            379     0.016   14.6   0.1   1   2   0.00035      0.23   10.8   0.0    30    50    32    52    24    72 0.90 AAA domain
AAA_19               PF13245.1     76 sp|O83658|POTA_TREPA -            379     0.028   14.1   0.0   1   1   9.4e-05     0.064   13.0   0.0     9    34    34    58    24    82 0.82 Part of AAA domain
AAA_29               PF13555.1     62 sp|O83658|POTA_TREPA -            379     0.037   13.5   0.0   1   1   0.00011     0.077   12.5   0.0    14    40    27    52    24    56 0.84 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|O83658|POTA_TREPA -            379     0.037   13.2   0.0   1   1    0.0001     0.068   12.3   0.0    32    59    31    59     5    89 0.80 Protein of unknown function, DUF258
Arch_ATPase          PF01637.13   234 sp|O83658|POTA_TREPA -            379     0.049   13.3   0.0   1   1   0.00013      0.09   12.4   0.0    21    40    36    55    30    71 0.84 Archaeal ATPase
AAA_23               PF13476.1    202 sp|O83658|POTA_TREPA -            379     0.084   13.1   0.1   1   1   0.00031      0.21   11.9   0.0    21    39    37    55    23    57 0.85 AAA domain
Rad17                PF03215.10   519 sp|O83658|POTA_TREPA -            379      0.11   11.2   0.0   1   1   0.00023      0.16   10.6   0.0    47    66    37    56    23    63 0.83 Rad17 cell cycle checkpoint protein
AAA_17               PF13207.1    121 sp|O83658|POTA_TREPA -            379      0.11   13.3   0.2   1   1   0.00033      0.22   12.3   0.2     4    20    40    56    38   195 0.87 AAA domain
AAA_28               PF13521.1    163 sp|O83658|POTA_TREPA -            379      0.12   12.2   0.1   1   1   0.00041      0.27   11.1   0.0     3    20    39    56    37    68 0.88 AAA domain
TOBE                 PF03459.12    64 sp|O83658|POTA_TREPA -            379      0.13   12.3   0.0   1   1   0.00095      0.64   10.1   0.0    35    64   274   299   260   299 0.91 TOBE domain
ATP-synt_ab          PF00006.20   215 sp|O83658|POTA_TREPA -            379      0.14   11.6   0.0   1   1   0.00033      0.22   10.9   0.0    12    59    32    86    24   122 0.77 ATP synthase alpha/beta family, nucleotide-binding domain
NB-ARC               PF00931.17   287 sp|O83658|POTA_TREPA -            379      0.15   10.8   0.0   1   1   0.00047      0.31    9.8   0.0    20    57    36    76    29   131 0.75 NB-ARC domain
PEP-utilizers_C      PF02896.13   294 sp|O83728|PPDK_TREPA -            901     4e-84  281.9   0.1   1   1   1.2e-87   6.2e-84  281.3   0.1    17   293   520   874   508   875 0.91 PEP-utilising enzyme, TIM barrel domain
PPDK_N               PF01326.14   329 sp|O83728|PPDK_TREPA -            901   1.4e-25   90.0   0.0   1   1   5.7e-27   2.8e-23   82.4   0.0     6   311    24   327    17   343 0.81 Pyruvate phosphate dikinase, PEP/pyruvate binding domain
PEP-utilizers        PF00391.18    81 sp|O83728|PPDK_TREPA -            901   2.3e-14   52.6   0.2   1   2   1.8e-17   8.7e-14   50.8   0.1     2    77   401   483   400   484 0.91 PEP-utilising enzyme, mobile domain
Pro_isomerase        PF00160.16   155 sp|O66105|PPIB_TREPA -            215   3.1e-45  154.1   0.0   1   1   2.7e-49     4e-45  153.8   0.0     2   139    42   179    41   191 0.87 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
DEAD                 PF00270.24   169 sp|O83258|PRIA_TREPA -            657   3.6e-15   55.8   0.0   1   1   7.2e-18   1.1e-14   54.3   0.0     4   163   136   292   133   296 0.80 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|O83258|PRIA_TREPA -            657   2.2e-10   40.2   0.1   1   1   7.9e-13   1.2e-09   37.9   0.0     8    76   435   516   431   518 0.90 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|O83258|PRIA_TREPA -            657   9.2e-09   35.3   0.0   1   1   1.3e-09   1.9e-06   27.8   0.0     6    79   134   200   129   293 0.61 Type III restriction enzyme, res subunit
AAA_30               PF13604.1    196 sp|O83258|PRIA_TREPA -            657   2.2e-08   33.8   0.1   1   1   2.5e-11   3.6e-08   33.2   0.1     2    91   132   233   131   261 0.74 AAA domain
AAA_19               PF13245.1     76 sp|O83258|PRIA_TREPA -            657    0.0016   18.1   1.9   1   1   2.2e-06    0.0032   17.1   0.4     2    50   142   185   138   212 0.78 Part of AAA domain
PIF1                 PF05970.9    364 sp|O83258|PRIA_TREPA -            657    0.0032   16.4   0.0   1   1   3.3e-06    0.0048   15.8   0.0     2    54   132   181   131   185 0.88 PIF1-like helicase
AAA_16               PF13191.1    185 sp|O83258|PRIA_TREPA -            657     0.049   13.6   0.1   1   1   7.9e-05      0.12   12.3   0.1    20    63   145   188   132   238 0.75 AAA ATPase domain
TrwB_AAD_bind        PF10412.4    386 sp|O83258|PRIA_TREPA -            657     0.058   12.0   0.0   1   1     6e-05     0.088   11.4   0.0    12    47   146   181   140   196 0.88 Type IV secretion-system coupling protein DNA-binding domain
Zot                  PF05707.7    193 sp|O83258|PRIA_TREPA -            657     0.076   12.4   0.0   1   2   0.00026      0.39   10.1   0.0     5    91   154   257   152   310 0.67 Zonular occludens toxin (Zot)
Arch_ATPase          PF01637.13   234 sp|O83258|PRIA_TREPA -            657       0.2   11.3   0.0   1   1   0.00022      0.32   10.6   0.0    11    56   140   185   137   213 0.83 Archaeal ATPase
Aldedh               PF00171.17   462 sp|P74935|PROA_TREPA -            428   1.2e-13   50.2   2.7   1   2   1.2e-12   9.1e-09   34.1   1.4    32   294    14   279     2   286 0.76 Aldehyde dehydrogenase family
Aldedh               PF00171.17   462 sp|P74935|PROA_TREPA -            428   1.2e-13   50.2   2.7   2   2   6.3e-07    0.0047   15.3   0.0   376   436   330   389   315   398 0.90 Aldehyde dehydrogenase family
DUF1487              PF07368.6    215 sp|P74935|PROA_TREPA -            428      0.04   13.1   1.0   2   3   1.2e-05     0.092   11.9   0.1    11    58   231   279   225   287 0.81 Protein of unknown function (DUF1487)
AA_kinase            PF00696.23   242 sp|P74936|PROB_TREPA -            296   2.3e-48  164.8   0.0   1   1   1.8e-52   2.6e-48  164.6   0.0     1   242    10   272    10   272 0.96 Amino acid kinase family
PTA_PTB              PF01515.14   319 sp|O83132|PTAS_TREPA -            336  5.8e-108  360.7   0.0   1   1  4.4e-112  6.6e-108  360.5   0.0     2   318     3   329     2   330 0.97 Phosphate acetyl/butaryl transferase
PTS-HPr              PF00381.14    84 sp|O83598|PTHP_TREPA -             88   1.8e-29  101.4   1.0   1   1   1.3e-33     2e-29  101.3   1.0     1    83     1    83     1    84 0.98 PTS HPr component phosphorylation site
Pept_tRNA_hydro      PF01195.14   184 sp|O83975|PTH_TREPA  -            202   3.2e-58  196.2   0.0   1   1   2.5e-62   3.7e-58  196.0   0.0     1   180     5   186     5   190 0.91 Peptidyl-tRNA hydrolase
CTP_synth_N          PF06418.9    276 sp|O83327|PYRG_TREPA -            577  5.8e-118  392.9   0.0   1   1  1.7e-121  8.6e-118  392.4   0.0     3   266     5   268     3   274 0.99 CTP synthase N-terminus
GATase               PF00117.23   192 sp|O83327|PYRG_TREPA -            577   1.1e-40  139.0   0.0   1   1   3.7e-44   1.9e-40  138.4   0.0     2   190   343   566   342   568 0.88 Glutamine amidotransferase class-I
Peptidase_C26        PF07722.8    217 sp|O83327|PYRG_TREPA -            577   2.3e-09   37.0   0.0   2   2   1.3e-12   6.6e-09   35.5   0.0   100   217   410   550   403   550 0.83 Peptidase C26
AAA_25               PF13481.1    194 sp|O83985|RADA_TREPA -            455   5.3e-19   68.3   0.0   1   1   1.3e-21   9.7e-19   67.5   0.0     9   193    66   218    58   219 0.85 AAA domain
KaiC                 PF06745.8    227 sp|O83985|RADA_TREPA -            455   2.2e-15   56.4   0.1   1   1   4.4e-15   3.3e-12   46.0   0.1     2   196    73   249    72   258 0.80 KaiC
ChlI                 PF13541.1    121 sp|O83985|RADA_TREPA -            455   5.6e-14   51.7   0.0   1   1   1.8e-16   1.3e-13   50.4   0.0    27   118   332   423   305   425 0.91 Subunit ChlI of Mg-chelatase
Lon_C                PF05362.8    205 sp|O83985|RADA_TREPA -            455   1.9e-08   33.9   0.0   1   1   4.9e-11   3.7e-08   32.9   0.0    90   175   345   429   297   448 0.85 Lon protease (S16) C-terminal proteolytic domain
NTPase_1             PF03266.10   168 sp|O83985|RADA_TREPA -            455    0.0011   18.6   0.1   1   1   7.3e-06    0.0054   16.4   0.1     2    32    93   123    92   137 0.89 NTPase
AAA_19               PF13245.1     76 sp|O83985|RADA_TREPA -            455    0.0019   17.8   0.2   1   1   7.8e-06    0.0058   16.3   0.2     6    50    87   123    85   133 0.83 Part of AAA domain
AAA_5                PF07728.9    139 sp|O83985|RADA_TREPA -            455     0.002   17.8   0.0   1   1   5.6e-06    0.0041   16.8   0.0     2    34    93   125    92   136 0.89 AAA domain (dynein-related subfamily)
DnaB_C               PF03796.10   259 sp|O83985|RADA_TREPA -            455    0.0045   15.9   0.0   1   1   9.3e-06    0.0069   15.3   0.0     2    45    72   116    71   135 0.86 DnaB-like helicase C terminal domain
AAA_16               PF13191.1    185 sp|O83985|RADA_TREPA -            455    0.0045   16.9   0.2   1   1   4.4e-05     0.033   14.1   0.1    24    59    90   122    65   149 0.77 AAA ATPase domain
AAA_24               PF13479.1    213 sp|O83985|RADA_TREPA -            455    0.0095   15.5   0.0   1   1   2.7e-05      0.02   14.5   0.0     6   120    93   202    88   229 0.67 AAA domain
AAA_22               PF13401.1    131 sp|O83985|RADA_TREPA -            455     0.012   15.7   0.0   1   1   5.4e-05      0.04   14.0   0.0     4   114    90   196    87   213 0.68 AAA domain
Rad51                PF08423.6    256 sp|O83985|RADA_TREPA -            455     0.014   14.2   0.0   1   1   5.2e-05     0.038   12.8   0.0    13    63    65   115    56   129 0.86 Rad51
AAA                  PF00004.24   132 sp|O83985|RADA_TREPA -            455     0.018   15.2   0.0   1   1   6.1e-05     0.046   13.9   0.0     2    37    94   129    93   238 0.79 ATPase family associated with various cellular activities (AAA)
AAA_14               PF13173.1    128 sp|O83985|RADA_TREPA -            455     0.024   14.5   0.0   1   1   5.8e-05     0.043   13.7   0.0     2    73    90   175    89   212 0.66 AAA domain
NACHT                PF05729.7    166 sp|O83985|RADA_TREPA -            455     0.027   14.1   0.1   1   1   7.3e-05     0.054   13.1   0.1     3    28    93   118    91   123 0.86 NACHT domain
Zeta_toxin           PF06414.7    201 sp|O83985|RADA_TREPA -            455     0.088   11.8   0.1   1   1   0.00022      0.16   11.0   0.1    15    48    89   121    86   126 0.84 Zeta toxin
DUF258               PF03193.11   161 sp|O83985|RADA_TREPA -            455      0.11   11.6   0.0   1   1   0.00027       0.2   10.8   0.0    35    78    90   133    76   147 0.85 Protein of unknown function, DUF258
AAA_18               PF13238.1    129 sp|O83985|RADA_TREPA -            455      0.12   12.6   0.0   1   1   0.00033      0.24   11.6   0.0     1    28    93   120    93   187 0.88 AAA domain
DAP3                 PF10236.4    309 sp|O83985|RADA_TREPA -            455      0.13   11.1   0.2   1   1   0.00034      0.25   10.2   0.2    26    47    93   114    80   123 0.87 Mitochondrial ribosomal death-associated protein 3
MCM                  PF00493.18   331 sp|O83985|RADA_TREPA -            455      0.15   10.7   0.0   1   1   0.00032      0.24   10.1   0.0    59    92    92   126    83   129 0.78 MCM2/3/5 family
RBFA                 PF02033.13   104 sp|O83860|RBFA_TREPA -            126   1.1e-25   89.6   0.0   1   1   1.7e-29   1.3e-25   89.4   0.0     1   102     8   111     8   113 0.96 Ribosome-binding factor A
PMT_C                PF11647.3     66 sp|O83860|RBFA_TREPA -            126     0.062   12.9   0.0   1   1   1.3e-05     0.094   12.3   0.0    22    57    81   119    64   124 0.91 C-terminal region of Pasteurella multocida toxin residues 569-1285
RecA                 PF00154.16   323 sp|O83690|RECA_TREPA -            407  2.4e-158  526.3   1.3   1   1  2.2e-161    3e-158  526.0   1.3     1   320    20   340    20   342 0.99 recA bacterial DNA recombination protein
KaiC                 PF06745.8    227 sp|O83690|RECA_TREPA -            407   1.4e-08   34.1   1.8   1   2   2.1e-08   2.9e-05   23.3   0.0     2    57    54   109    53   128 0.83 KaiC
KaiC                 PF06745.8    227 sp|O83690|RECA_TREPA -            407   1.4e-08   34.1   1.8   2   2   0.00042      0.57    9.2   0.4   135   191   183   253   129   273 0.69 KaiC
Rad51                PF08423.6    256 sp|O83690|RECA_TREPA -            407   5.8e-07   28.6   0.1   1   2   9.2e-06     0.012   14.4   0.0    17    87    50   115    39   125 0.79 Rad51
Rad51                PF08423.6    256 sp|O83690|RECA_TREPA -            407   5.8e-07   28.6   0.1   2   2   4.6e-05     0.063   12.1   0.0   121   224   138   242   129   251 0.77 Rad51
AAA_25               PF13481.1    194 sp|O83690|RECA_TREPA -            407   3.4e-05   23.3   0.4   1   1   7.7e-07     0.001   18.4   0.4    28   186    67   205    53   210 0.72 AAA domain
AAA_22               PF13401.1    131 sp|O83690|RECA_TREPA -            407   0.00091   19.3   0.0   1   1   2.4e-06    0.0032   17.5   0.0     5   122    73   205    69   209 0.79 AAA domain
Arch_ATPase          PF01637.13   234 sp|O83690|RECA_TREPA -            407    0.0023   17.6   0.0   1   1   3.5e-06    0.0048   16.6   0.0    21    65    73   117    68   204 0.84 Archaeal ATPase
AAA_24               PF13479.1    213 sp|O83690|RECA_TREPA -            407     0.037   13.5   0.0   1   1     5e-05     0.067   12.7   0.0     8    81    77   163    71   208 0.74 AAA domain
AAA_16               PF13191.1    185 sp|O83690|RECA_TREPA -            407     0.049   13.6   0.1   1   1   7.8e-05      0.11   12.5   0.1    23   156    71   205    60   210 0.57 AAA ATPase domain
AAA_35               PF14516.1    331 sp|O83690|RECA_TREPA -            407     0.063   11.9   0.0   1   1   7.6e-05       0.1   11.2   0.0    30    70    71   111    69   121 0.89 AAA-like domain
CobU                 PF02283.11   167 sp|O83690|RECA_TREPA -            407     0.063   12.6   0.0   1   1   0.00017      0.22   10.8   0.0     3   121    77   206    75   220 0.84 Cobinamide kinase / cobinamide phosphate guanyltransferase
MobB                 PF03205.9    140 sp|O83690|RECA_TREPA -            407     0.099   12.3   0.0   1   1   0.00017      0.23   11.1   0.0     2    36    74   107    73   119 0.82 Molybdopterin guanine dinucleotide synthesis protein B
AAA_23               PF13476.1    202 sp|O83049|RECF_TREPA -            352   9.3e-13   48.9   0.4   1   1     8e-16   1.3e-12   48.4   0.4     6   115     5   110     1   207 0.61 AAA domain
SMC_N                PF02463.14   220 sp|O83049|RECF_TREPA -            352   2.7e-11   43.1   0.0   1   1   9.2e-14   1.5e-10   40.6   0.0     8   194     4   324     1   350 0.86 RecF/RecN/SMC N terminal domain
AAA_21               PF13304.1    303 sp|O83049|RECF_TREPA -            352   2.2e-07   31.1   0.6   1   1   9.9e-10   1.6e-06   28.2   0.7     3   279    22   313    21   316 0.71 AAA domain
AAA_15               PF13175.1    415 sp|O83049|RECF_TREPA -            352   0.00077   18.6   1.1   1   1     9e-07    0.0015   17.6   1.1     8   104     5   106     2   112 0.53 AAA ATPase domain
ABC_tran             PF00005.22   137 sp|O83049|RECF_TREPA -            352    0.0077   16.5   0.1   1   1   7.5e-05      0.12   12.6   0.1    14    37    21    44    13   283 0.77 ABC transporter
AAA_29               PF13555.1     62 sp|O83049|RECF_TREPA -            352     0.016   14.6   0.0   1   1     2e-05     0.034   13.6   0.0     7    51     4    46     1    54 0.78 P-loop containing region of AAA domain
RNA_helicase         PF00910.17   107 sp|O83049|RECF_TREPA -            352     0.018   15.2   0.1   1   2   0.00013      0.21   11.7   0.0     1    83    21   110    21   116 0.74 RNA helicase
AAA                  PF00004.24   132 sp|O83049|RECF_TREPA -            352     0.064   13.4   0.0   1   1   9.4e-05      0.16   12.2   0.0     1    64    21   113    21   129 0.78 ATPase family associated with various cellular activities (AAA)
SNAP                 PF14938.1    282 sp|O83049|RECF_TREPA -            352      0.11   11.6   0.0   1   1   9.8e-05      0.16   11.0   0.0   168   208    72   112    52   121 0.88 Soluble NSF attachment protein, SNAP
DEAD                 PF00270.24   169 sp|P96130|RECG_TREPA -            686   4.7e-24   84.7   0.2   1   2   2.6e-25   4.9e-22   78.2   0.0     3   165   274   439   272   442 0.86 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|P96130|RECG_TREPA -            686   1.4e-18   66.5   0.1   2   2   6.4e-19   1.2e-15   57.1   0.1     7    77   521   592   516   593 0.95 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|P96130|RECG_TREPA -            686   1.1e-09   38.4   0.0   1   1     3e-11   5.6e-08   32.8   0.0     3   182   270   435   268   437 0.76 Type III restriction enzyme, res subunit
SNF2_N               PF00176.18   299 sp|P96130|RECG_TREPA -            686     0.021   13.6   0.0   1   1     2e-05     0.037   12.8   0.0    29   178   295   441   236   452 0.75 SNF2 family N-terminal domain
AAA_30               PF13604.1    196 sp|P96130|RECG_TREPA -            686     0.034   13.7   0.0   1   1   3.6e-05     0.066   12.7   0.0     2    65   271   338   270   419 0.69 AAA domain
SecA_DEAD            PF07517.9    266 sp|P96130|RECG_TREPA -            686     0.035   13.3   0.0   1   1   3.3e-05     0.061   12.6   0.0    97   162   298   363   278   400 0.90 SecA DEAD-like domain
AAA_19               PF13245.1     76 sp|P96130|RECG_TREPA -            686     0.059   13.1   0.3   1   1   8.8e-05      0.16   11.7   0.1    14    58   295   335   282   351 0.80 Part of AAA domain
DUF2075              PF09848.4    352 sp|P96130|RECG_TREPA -            686     0.097   11.6   0.1   1   1   0.00011       0.2   10.6   0.1     5    95   295   404   292   429 0.62 Uncharacterized conserved protein (DUF2075)
SMC_N                PF02463.14   220 sp|O83456|RECN_TREPA -            573   1.6e-17   63.5   0.0   1   1   1.2e-20   2.1e-17   63.1   0.0     2   217     2   520     1   523 0.95 RecF/RecN/SMC N terminal domain
AAA_23               PF13476.1    202 sp|O83456|RECN_TREPA -            573   2.9e-09   37.5   0.0   1   1   9.2e-12   1.5e-08   35.2   0.0     1   176     4   208     4   361 0.61 AAA domain
ABC_tran             PF00005.22   137 sp|O83456|RECN_TREPA -            573   0.00082   19.6   0.1   1   2     7e-05      0.12   12.7   0.1    12    38    23    49    15   220 0.91 ABC transporter
AAA_29               PF13555.1     62 sp|O83456|RECN_TREPA -            573    0.0054   16.2   0.1   1   1   6.7e-06     0.011   15.2   0.1    23    46    22    45     3    51 0.82 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|O83456|RECN_TREPA -            573     0.075   12.2   0.8   1   1   0.00013      0.22   10.7   0.0    18    57     5    44     2    60 0.84 Protein of unknown function, DUF258
AAA_15               PF13175.1    415 sp|O83456|RECN_TREPA -            573       0.1   11.6   0.0   1   1   9.9e-05      0.16   10.9   0.0     1    43     2    48     2   113 0.88 AAA ATPase domain
Toprim_4             PF13662.1     81 sp|O83969|RECR_TREPA -            201     2e-19   69.3   0.1   1   1   9.8e-23   3.7e-19   68.5   0.1     2    81    79   169    78   169 0.95 Toprim domain
RecR                 PF02132.10    41 sp|O83969|RECR_TREPA -            201   8.6e-08   31.4   8.7   1   1   6.1e-11   2.2e-07   30.1   8.7     2    41    37    76    36    76 0.97 RecR protein
Toprim               PF01751.17   100 sp|O83969|RECR_TREPA -            201    0.0003   20.7   0.0   1   1   1.4e-07   0.00053   19.9   0.0     2    86    80   160    79   169 0.83 Toprim domain
Apc4                 PF12896.2    210 sp|O83969|RECR_TREPA -            201      0.21   10.8   0.0   1   1   8.4e-05      0.31   10.3   0.0   126   177     1    54     1    58 0.86 Anaphase-promoting complex, cyclosome, subunit 4
RecX                 PF02631.11   122 sp|O83986|RECX_TREPA -            164   3.4e-21   75.7   0.2   1   1     1e-24   5.2e-21   75.1   0.2     1   117    44   158    26   163 0.93 RecX family
UTP15_C              PF09384.5    148 sp|O83986|RECX_TREPA -            164     0.015   15.0   0.2   1   1   6.3e-06     0.031   13.9   0.1    35    71   106   146    97   150 0.91 UTP15 C terminal
TrbH                 PF07283.6    121 sp|O83986|RECX_TREPA -            164      0.13   12.0   0.0   1   1   4.9e-05      0.24   11.2   0.0    27    63   111   147   100   159 0.82 Conjugal transfer protein TrbH
RF-1                 PF00472.15   114 sp|O83090|RF1_TREPA  -            351   2.5e-41  140.0   1.1   1   1   1.1e-44   5.5e-41  138.9   1.1     3   114   208   319   206   319 0.98 RF-1 domain
PCRF                 PF03462.13   116 sp|O83090|RF1_TREPA  -            351   8.1e-38  128.6   0.0   1   1   4.3e-41   2.1e-37  127.3   0.0     4   116    65   177    62   177 0.98 PCRF domain
Tup_N                PF08581.5     79 sp|O83090|RF1_TREPA  -            351     0.056   13.6   0.2   2   2   1.1e-05     0.056   13.6   0.2    29    61   257   289   253   294 0.87 Tup N-terminal
RF-1                 PF00472.15   114 sp|O83585|RF2_TREPA  -            368     1e-39  134.8   0.6   1   1   3.4e-43   1.7e-39  134.1   0.6     3   114   220   331   218   331 0.97 RF-1 domain
PCRF                 PF03462.13   116 sp|O83585|RF2_TREPA  -            368     5e-27   93.9   0.0   1   1   2.1e-30     1e-26   92.9   0.0     5   116    82   188    78   188 0.87 PCRF domain
Omega_Repress        PF07764.6     71 sp|O83585|RF2_TREPA  -            368      0.13   12.6   0.0   1   1   5.8e-05      0.29   11.5   0.0    18    67   304   355   292   358 0.70 Omega Transcriptional Repressor
Rho_RNA_bind         PF07497.7     78 sp|O83281|RHO_TREPA  -            519   5.8e-39  131.5   0.0   1   1   1.1e-41   1.3e-38  130.4   0.0     1    77   148   224   148   225 0.97 Rho termination factor, RNA-binding domain
ATP-synt_ab          PF00006.20   215 sp|O83281|RHO_TREPA  -            519   6.9e-39  133.5   0.1   1   1   8.4e-42   9.6e-39  133.0   0.1     3   214   255   460   253   461 0.96 ATP synthase alpha/beta family, nucleotide-binding domain
Rho_N                PF07498.7     43 sp|O83281|RHO_TREPA  -            519   5.1e-11   42.1   0.0   1   1   1.1e-13   1.3e-10   40.8   0.0     1    43   102   146   102   146 0.96 Rho termination factor, N-terminal domain
NACHT                PF05729.7    166 sp|O83281|RHO_TREPA  -            519   7.8e-05   22.3   0.0   1   1   1.9e-07   0.00022   20.9   0.0    12    99   279   372   272   392 0.80 NACHT domain
AAA_25               PF13481.1    194 sp|O83281|RHO_TREPA  -            519   0.00026   20.4   0.1   1   1   2.6e-06     0.003   17.0   0.1    32   156   266   368   244   383 0.63 AAA domain
AAA_22               PF13401.1    131 sp|O83281|RHO_TREPA  -            519    0.0012   18.9   0.0   1   1   2.6e-06     0.003   17.7   0.0     7   100   270   367   265   381 0.70 AAA domain
AAA                  PF00004.24   132 sp|O83281|RHO_TREPA  -            519    0.0017   18.5   0.2   1   1   4.4e-06     0.005   17.0   0.0     2    76   271   372   270   405 0.70 ATPase family associated with various cellular activities (AAA)
OB_RNB               PF08206.6     58 sp|O83281|RHO_TREPA  -            519    0.0019   17.6   0.0   1   1   5.5e-06    0.0062   16.0   0.0     1    48   152   206   152   209 0.81 Ribonuclease B OB domain
Arch_ATPase          PF01637.13   234 sp|O83281|RHO_TREPA  -            519     0.003   17.2   0.0   1   1   6.2e-06     0.007   16.0   0.0    25   131   272   367   265   379 0.72 Archaeal ATPase
AAA_14               PF13173.1    128 sp|O83281|RHO_TREPA  -            519     0.022   14.6   0.2   1   1   0.00016      0.18   11.6   0.0     6    73   271   366   266   392 0.60 AAA domain
AAA_16               PF13191.1    185 sp|O83281|RHO_TREPA  -            519     0.032   14.2   0.1   1   1   0.00016      0.19   11.7   0.1    22   119   265   366   251   478 0.70 AAA ATPase domain
AAA_19               PF13245.1     76 sp|O83281|RHO_TREPA  -            519     0.069   12.9   0.0   1   1   0.00016      0.18   11.5   0.0    11    47   269   301   263   332 0.63 Part of AAA domain
AAA_10               PF12846.2    304 sp|O83281|RHO_TREPA  -            519     0.078   12.3   0.0   1   1   0.00021      0.24   10.7   0.0     4    54   270   325   268   337 0.81 AAA-like domain
RimM                 PF01782.13    84 sp|O83877|RIMM_TREPA -            174   2.2e-12   46.6   0.0   1   1   2.3e-16   3.5e-12   46.0   0.0     3    83     3    94     1    95 0.85 RimM N-terminal domain
DUF150               PF02576.12   141 sp|O83863|RIMP_TREPA -            156   1.4e-21   76.5   0.0   1   1   1.2e-25   1.7e-21   76.2   0.0     2   141    14   150    13   150 0.92 Uncharacterised BCR, YhbC family COG0779
Ribonuc_red_lgC      PF02867.10   538 sp|O83972|RIR1_TREPA -            845    7e-162  539.7   0.0   1   1  3.1e-164  1.5e-160  535.2   0.0     1   538   316   830   316   830 0.96 Ribonucleotide reductase, barrel domain
ATP-cone             PF03477.11    90 sp|O83972|RIR1_TREPA -            845   6.2e-20   71.4   4.5   1   2   1.3e-22   6.3e-19   68.2   0.2     1    89     1    95     1    96 0.94 ATP cone domain
Ribonuc_red_lgN      PF00317.16    83 sp|O83972|RIR1_TREPA -            845   3.8e-18   65.0   0.1   1   1   1.9e-21   9.4e-18   63.8   0.1     1    81   237   312   237   314 0.96 Ribonucleotide reductase, all-alpha domain
Ribonuc_red_sm       PF00268.16   281 sp|O83092|RIR2_TREPA -            351   2.3e-44  151.4   1.1   1   1     2e-48     3e-44  151.1   1.1     8   274    35   310    30   318 0.86 Ribonucleotide reductase, small chain
Ribosomal_L10        PF00466.15   100 sp|O83267|RL10_TREPA -            180   4.6e-18   64.9   0.0   1   1   1.6e-21   7.9e-18   64.2   0.0     5   100    11   105     8   105 0.96 Ribosomal protein L10
DUF4351              PF14261.1     59 sp|O83267|RL10_TREPA -            180     0.078   12.8   0.0   1   2     5e-05      0.25   11.2   0.0    15    51    18    54     6    59 0.88 Domain of unknown function (DUF4351)
DUF354               PF04007.7    335 sp|O83267|RL10_TREPA -            180      0.12   11.1   0.0   1   1   2.6e-05      0.13   11.1   0.0    76   161    56   142    13   169 0.78 Protein of unknown function (DUF354)
Ribosomal_L11_N      PF03946.9     60 sp|O83265|RL11_TREPA -            146   2.2e-29  100.6   0.3   1   1     5e-33   3.7e-29   99.9   0.3     2    60    11    69    10    69 0.99 Ribosomal protein L11, N-terminal domain
Ribosomal_L11        PF00298.14    69 sp|O83265|RL11_TREPA -            146   5.8e-27   93.6   1.0   1   1   1.2e-30   9.2e-27   92.9   1.0     1    69    74   142    74   142 0.99 Ribosomal protein L11, RNA binding domain
Ribosomal_L13        PF00572.13   128 sp|O83988|RL13_TREPA -            142     1e-49  167.8   0.0   1   1   7.7e-54   1.1e-49  167.6   0.0     1   126    15   140    15   142 0.99 Ribosomal protein L13
Ribosomal_L14        PF00238.14   122 sp|O83229|RL14_TREPA -            122   1.7e-52  176.3   1.7   1   1   1.2e-56   1.8e-52  176.2   1.7     1   122     1   122     1   122 0.99 Ribosomal protein L14p/L23e
Ribosomal_L18e       PF00828.14   129 sp|O83237|RL15_TREPA -            153   2.8e-30  105.3   0.6   1   1   2.4e-34   3.6e-30  104.9   0.6     3   128    27   147    26   148 0.92 Ribosomal protein L18e/L15
Ribosomal_L16        PF00252.13   133 sp|O83226|RL16_TREPA -            139   6.3e-50  168.3   0.1   1   1   4.8e-54   7.1e-50  168.2   0.1     1   132     5   133     5   134 0.99 Ribosomal protein L16p/L10e
Ribosomal_L17        PF01196.14    97 sp|O83243|RL17_TREPA -            164   4.6e-34  116.8   0.2   1   1   4.1e-38   6.1e-34  116.4   0.2     1    97    20   116    20   116 0.99 Ribosomal protein L17
Ribosomal_L18p       PF00861.17   119 sp|O83235|RL18_TREPA -            120   1.5e-30  105.8   1.7   1   1   1.2e-34   1.8e-30  105.6   1.7     2   119     8   120     7   120 0.95 Ribosomal L18p/L5e family
Ribosomal_L19        PF01245.15   113 sp|O83879|RL19_TREPA -            123   4.2e-45  152.1   3.6   1   1   6.5e-49   4.8e-45  151.9   3.6     2   112     4   114     3   115 0.98 Ribosomal protein L19
S1                   PF00575.18    74 sp|O83879|RL19_TREPA -            123     0.017   15.2   1.1   1   2     7e-06     0.052   13.6   0.1    34    70     6    42     5    44 0.89 S1 RNA binding domain
Ribosomal_L1         PF00687.16   220 sp|O83266|RL1_TREPA  -            226     3e-40  137.9   0.0   1   1   4.5e-44   3.3e-40  137.7   0.0    16   220    33   217     8   217 0.91 Ribosomal protein L1p/L10e family
HSDR_N_2             PF13588.1    112 sp|O83266|RL1_TREPA  -            226     0.099   12.4   0.0   1   1   2.8e-05      0.21   11.4   0.0    13    65    28    82    25   104 0.76 Type I restriction enzyme R protein N terminus (HSDR_N)
Ribosomal_L20        PF00453.13   108 sp|O83820|RL20_TREPA -            122   2.4e-39  133.5   1.7   1   1   1.8e-43   2.7e-39  133.4   1.7     6   107     7   108     2   109 0.96 Ribosomal protein L20
Ribosomal_L21p       PF00829.16    96 sp|O83727|RL21_TREPA -            105   4.1e-32  110.1   0.0   1   1   6.3e-36   4.6e-32  110.0   0.0     1    96     1    97     1    97 0.99 Ribosomal prokaryotic L21 protein
PRCH                 PF03967.8    136 sp|O83727|RL21_TREPA -            105      0.17   11.4   0.0   1   1   3.7e-05      0.27   10.7   0.0    60   111     8    61     3    67 0.89 Photosynthetic reaction centre, H-chain N-terminal region
Ribosomal_L22        PF00237.14   105 sp|O83224|RL22_TREPA -            124   2.2e-27   95.0   0.1   1   1   1.8e-31   2.6e-27   94.8   0.1     1   105     9   114     9   114 0.96 Ribosomal protein L22p/L17e
Ribosomal_L23        PF00276.15    92 sp|O83221|RL23_TREPA -             94   3.7e-20   71.6   0.4   1   1   2.6e-24   3.9e-20   71.5   0.4     1    90     4    92     4    94 0.92 Ribosomal protein L23
KOW                  PF00467.24    32 sp|O83230|RL24_TREPA -            103   5.5e-07   29.0   1.3   2   4   7.4e-11   5.5e-07   29.0   1.3     1    31     9    39     9    40 0.96 KOW motif
DUF3320              PF11784.3     52 sp|O83230|RL24_TREPA -            103     0.063   12.8   0.3   1   1   1.8e-05      0.13   11.7   0.3    20    33    60    73    59    89 0.74 Protein of unknown function (DUF3320)
Ribosomal_L25p       PF01386.14    88 sp|O83387|RL25_TREPA -            196   6.1e-20   71.1   0.0   1   1   1.2e-23   9.2e-20   70.5   0.0     1    88     6    93     6    93 0.97 Ribosomal L25p family
Ribosomal_TL5_C      PF14693.1     88 sp|O83387|RL25_TREPA -            196   1.6e-18   66.6   0.0   1   1   3.3e-22   2.5e-18   66.0   0.0     3    87   102   186   100   187 0.96 Ribosomal protein TL5, C-terminal domain
Ribosomal_L27        PF01016.14    81 sp|O83725|RL27_TREPA -             87   1.1e-34  118.0   0.5   1   1   8.5e-39   1.3e-34  117.8   0.5     1    81     2    81     2    81 0.97 Ribosomal L27 protein
Ribosomal_L28        PF00830.14    61 sp|P96131|RL28_TREPA -             78   1.5e-18   66.3   0.8   1   1   2.3e-22   1.7e-18   66.2   0.8     1    59     3    62     3    64 0.94 Ribosomal L28 family
Flavi_glycoprot      PF00869.15   293 sp|P96131|RL28_TREPA -             78     0.059   12.3   0.1   1   1     8e-06     0.059   12.3   0.1   104   125     4    25     2    70 0.82 Flavivirus glycoprotein, central and dimerisation domains
Ribosomal_L29        PF00831.18    58 sp|O83227|RL29_TREPA -             72   1.4e-08   34.2   1.9   1   1   9.3e-13   1.4e-08   34.2   1.9     6    58     8    60     6    60 0.95 Ribosomal L29 protein
Ribosomal_L2_C       PF03947.13   130 sp|O83222|RL2_TREPA  -            273   1.7e-52  176.6   0.7   1   1   3.8e-56   2.8e-52  175.9   0.7     2   130   125   251   124   251 0.98 Ribosomal Proteins L2, C-terminal domain
Ribosomal_L2         PF00181.18    77 sp|O83222|RL2_TREPA  -            273   3.7e-34  116.5   1.3   1   1   9.3e-38   6.9e-34  115.6   1.3     1    77    42   118    42   118 0.99 Ribosomal Proteins L2, RNA binding domain
Ribosomal_L31        PF01197.13    69 sp|O66075|RL31_TREPA -             67   3.5e-30  103.7   0.1   1   1   2.6e-34   3.8e-30  103.6   0.1     1    67     1    64     1    66 0.98 Ribosomal protein L31
Ribosomal_L32p       PF01783.18    56 sp|O83785|RL32_TREPA -             62   2.6e-22   78.7   2.1   1   1   9.5e-26   2.8e-22   78.6   2.1     1    55     2    57     2    58 0.98 Ribosomal L32p protein family
zf-ribbon_3          PF13248.1     26 sp|O83785|RL32_TREPA -             62   0.00081   18.5   3.9   1   1   4.4e-07    0.0013   17.8   3.9     3    23    29    48    27    49 0.94 zinc-ribbon domain
DUF572               PF04502.8    324 sp|O83785|RL32_TREPA -             62    0.0029   16.8   0.2   1   1   1.2e-06    0.0034   16.6   0.2    22    51    10    39     3    43 0.82 Family of unknown function (DUF572)
zf-NADH-PPase        PF09297.6     32 sp|O83785|RL32_TREPA -             62      0.26   10.8   8.4   2   2   7.7e-05      0.23   11.0   2.5     1    10    39    48    39    48 0.93 NADH pyrophosphatase zinc ribbon domain
Ribosomal_L33        PF00471.15    48 sp|O83262|RL33_TREPA -             56   3.4e-21   75.2   2.6   1   1   2.7e-25     4e-21   74.9   2.6     2    48     8    54     7    54 0.98 Ribosomal protein L33
Ribosomal_L34        PF00468.12    44 sp|O83917|RL34_TREPA -             51   9.8e-22   76.3  17.8   1   1   7.4e-26   1.1e-21   76.2  17.8     1    44     1    44     1    44 0.99 Ribosomal protein L34
Ribosomal_L35p       PF01632.14    61 sp|O83821|RL35_TREPA -             66     4e-17   61.8  13.3   1   1   3.1e-21   4.6e-17   61.6  13.3     2    59     3    60     2    62 0.97 Ribosomal protein L35
Ribosomal_L36        PF00444.13    38 sp|O83239|RL36_TREPA -             37   4.7e-18   64.8   8.9   1   1   3.4e-22     5e-18   64.7   8.9     1    38     1    37     1    37 0.99 Ribosomal protein L36
Ribosomal_L3         PF00297.17   263 sp|O83219|RL3_TREPA  -            208   7.4e-33  114.0   8.0   1   1   2.8e-34   4.1e-30  105.0   8.0     1   263     8   201     8   201 0.94 Ribosomal protein L3
Ribosomal_L4         PF00573.17   192 sp|O83220|RL4_TREPA  -            216   2.5e-55  186.8   0.0   1   1   1.9e-59   2.8e-55  186.6   0.0     1   190    16   202    16   204 0.97 Ribosomal protein L4/L1 family
Ribosomal_L5_C       PF00673.16    95 sp|O83231|RL5_TREPA  -            185   1.8e-39  133.3   0.1   1   1   1.1e-42     4e-39  132.2   0.0     1    94    90   183    90   184 0.99 ribosomal L5P family C-terminus
Ribosomal_L5         PF00281.14    56 sp|O83231|RL5_TREPA  -            185   2.8e-19   68.6   0.0   1   1   1.5e-22   5.7e-19   67.6   0.0     2    56    31    86    30    86 0.99 Ribosomal protein L5
CTV_P33              PF07184.6    303 sp|O83231|RL5_TREPA  -            185     0.047   12.5   0.0   1   1   1.6e-05      0.06   12.1   0.0    24   110    12   102     8   121 0.73 Citrus tristeza virus P33 protein
DUF2862              PF11061.3     64 sp|O83231|RL5_TREPA  -            185      0.11   12.2   0.0   1   1   7.4e-05      0.27   10.9   0.0    24    50    72    98    68   105 0.87 Protein of unknown function (DUF2862)
Ribosomal_L6         PF00347.18    77 sp|O83234|RL6_TREPA  -            179     6e-37  125.9   0.2   1   2   1.4e-20     2e-16   60.2   0.0     1    77    11    82    11    82 0.97 Ribosomal protein L6
Ribosomal_L6         PF00347.18    77 sp|O83234|RL6_TREPA  -            179     6e-37  125.9   0.2   2   2   7.6e-22   1.1e-17   64.2   0.0     2    76    91   164    90   165 0.98 Ribosomal protein L6
Ribosomal_L12        PF00542.14    68 sp|O83268|RL7_TREPA  -            129     1e-26   92.7  10.7   2   2   1.4e-30   2.1e-26   91.7   6.4     1    67    59   128    59   129 0.96 Ribosomal protein L7/L12 C-terminal domain
Ribosomal_L9_C       PF03948.9     87 sp|O83099|RL9_TREPA  -            156     3e-22   78.4   0.0   1   1   1.6e-25   5.8e-22   77.5   0.0     2    86    63   147    62   148 0.97 Ribosomal protein L9, C-terminal domain
Ribosomal_L9_N       PF01281.14    48 sp|O83099|RL9_TREPA  -            156   5.5e-19   67.1   0.1   1   1   2.4e-22   8.9e-19   66.4   0.1     1    48     1    48     1    48 0.97 Ribosomal protein L9, N-terminal domain
Microtub_bind        PF13931.1    143 sp|O83099|RL9_TREPA  -            156     0.031   14.4   0.1   1   1   1.3e-05     0.047   13.8   0.1    15    54    27    65    26    81 0.83 Kinesin-associated microtubule-binding
Pilus_CpaD           PF09476.5    203 sp|O83099|RL9_TREPA  -            156     0.049   13.0   0.0   1   1   1.5e-05     0.056   12.9   0.0    52   115    52   115    17   135 0.80 Pilus biogenesis CpaD protein (pilus_cpaD)
FtsJ                 PF01728.14   181 sp|O83687|RLME_TREPA -            200   8.2e-41  139.9   0.1   1   1     5e-44   9.3e-41  139.7   0.1     1   179    19   192    19   194 0.93 FtsJ-like methyltransferase
Methyltransf_18      PF12847.2    112 sp|O83687|RLME_TREPA -            200   0.00019   21.9   0.2   1   1   1.5e-07   0.00027   21.4   0.2     3    78    41   113    39   151 0.78 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|O83687|RLME_TREPA -            200   0.00053   19.7   0.0   1   1   4.6e-07   0.00086   19.0   0.0    20    84    37   111    13   114 0.65 Methyltransferase domain
NSP13                PF06460.7    300 sp|O83687|RLME_TREPA -            200     0.028   13.3   0.0   1   1   1.9e-05     0.036   12.9   0.0   110   207    93   191    30   199 0.66 Coronavirus NSP13
ChuX_HutX            PF06228.8    141 sp|O83687|RLME_TREPA -            200     0.089   12.1   0.0   1   1   7.8e-05      0.15   11.4   0.0   104   125   137   158   130   169 0.88 Haem utilisation ChuX/HutX
Nol1_Nop2_Fmu        PF01189.12   283 sp|O83687|RLME_TREPA -            200      0.12   11.6   0.0   1   1     9e-05      0.17   11.2   0.0    88   164    34   113    20   124 0.77 NOL1/NOP2/sun family
PCMT                 PF01135.14   210 sp|O83687|RLME_TREPA -            200      0.14   11.6   0.0   1   1   9.6e-05      0.18   11.3   0.0    57   155    23   118     3   150 0.84 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltrans_Mon      PF14314.1    675 sp|O83687|RLME_TREPA -            200      0.19    9.5   0.0   1   1   0.00012      0.22    9.3   0.0   427   499   124   192    96   198 0.73 Virus-capping methyltransferase
Radical_SAM          PF04055.16   166 sp|O83107|RLMN_TREPA -            340   1.1e-12   48.3   0.0   1   1   3.6e-16   1.8e-12   47.7   0.0     4   159   108   266   105   275 0.86 Radical SAM superfamily
Fer4_14              PF13394.1    119 sp|O83107|RLMN_TREPA -            340   3.2e-05   23.9   0.1   1   1   1.3e-08   6.5e-05   22.9   0.1     7    92   110   195   107   216 0.73 4Fe-4S single cluster domain
Fer4_12              PF13353.1    139 sp|O83107|RLMN_TREPA -            340     0.049   13.7   0.1   1   1   1.7e-05     0.085   12.9   0.1    13    79   109   173    99   222 0.74 4Fe-4S single cluster domain
DPBB_1               PF03330.13    78 sp|O83958|RLPA_TREPA -            318   3.3e-19   68.6   0.0   1   1   1.1e-22   5.5e-19   67.9   0.0     4    77    30   116    27   117 0.86 Rare lipoprotein A (RlpA)-like double-psi beta-barrel
SPOR                 PF05036.8     76 sp|O83958|RLPA_TREPA -            318     0.077   13.1   0.0   1   1   3.7e-05      0.19   11.9   0.0     5    22   271   288   268   303 0.88 Sporulation related domain
DUF605               PF04652.11   380 sp|O83958|RLPA_TREPA -            318      0.22   10.9   5.6   1   1     5e-05      0.25   10.7   5.6   216   329   125   243    98   295 0.66 Vta1 like
RNase_H              PF00075.19   132 sp|O83372|RNH_TREPA  -            169   1.5e-38  132.1   0.0   1   1   3.5e-42   1.8e-38  131.8   0.0     2   131     5   158     4   159 0.89 RNase H
RVT_3                PF13456.1     88 sp|O83372|RNH_TREPA  -            169      0.01   15.6   0.4   1   1   4.4e-06     0.022   14.5   0.4     2    39    59    96    58   160 0.92 Reverse transcriptase-like
DUF1451              PF07295.6    146 sp|O83372|RNH_TREPA  -            169      0.02   14.6   0.1   1   1   5.3e-06     0.026   14.2   0.1    42    92    88   138    57   144 0.82 Protein of unknown function (DUF1451)
DUF3552              PF12072.3    201 sp|O83981|RNY_TREPA  -            504   2.4e-45  154.2  20.9   1   1   9.9e-48   2.1e-44  151.1  20.9     2   200     4   188     3   189 0.96 Domain of unknown function (DUF3552)
HD                   PF01966.17   122 sp|O83981|RNY_TREPA  -            504   9.6e-20   70.8   0.6   1   1   4.5e-23   9.6e-20   70.8   0.6     1   121   320   412   320   413 0.96 HD domain
KH_1                 PF00013.24    60 sp|O83981|RNY_TREPA  -            504   2.8e-10   39.6   0.2   1   1   4.9e-13     1e-09   37.8   0.1     3    57   197   251   195   254 0.87 KH domain
KH_3                 PF13014.1     43 sp|O83981|RNY_TREPA  -            504   1.3e-05   24.6   0.1   1   1   1.7e-08   3.5e-05   23.3   0.1     3    40   207   238   205   252 0.87 KH domain
KH_4                 PF13083.1     73 sp|O83981|RNY_TREPA  -            504   1.4e-05   24.6   0.9   1   1   1.7e-08   3.6e-05   23.2   0.1    15    59   182   225   173   237 0.76 KH domain
HDOD                 PF08668.7    196 sp|O83981|RNY_TREPA  -            504   0.00011   21.5   2.5   2   2   2.6e-07   0.00054   19.2   0.3    95   172   320   394   313   404 0.78 HDOD domain
KH_2                 PF07650.12    78 sp|O83981|RNY_TREPA  -            504    0.0056   16.2   0.0   1   2   2.7e-06    0.0056   16.2   0.0    34    66   204   237   200   253 0.77 KH domain
Lactamase_B_2        PF12706.2    194 sp|O07896|RNZ_TREPA  -            310     2e-31  109.0   0.0   1   1   7.8e-35   2.9e-31  108.5   0.0     3   194    35   272    33   272 0.84 Beta-lactamase superfamily domain
Lactamase_B          PF00753.22   194 sp|O07896|RNZ_TREPA  -            310   2.8e-17   63.0   0.0   1   1   1.3e-20   4.8e-17   62.2   0.0     6    95    23   112    18   153 0.83 Metallo-beta-lactamase superfamily
Lactamase_B_4        PF13691.1     63 sp|O07896|RNZ_TREPA  -            310   0.00014   21.3   0.0   1   1   7.5e-08   0.00028   20.2   0.0    12    62    22    71    19    72 0.89 tRNase Z endonuclease
PDEase_II            PF02112.10   335 sp|O07896|RNZ_TREPA  -            310     0.041   12.8   0.0   1   1   1.8e-05     0.066   12.1   0.0    78   120    55    98    44   104 0.72 cAMP phosphodiesterases class-II
FTSW_RODA_SPOVE      PF01098.14   359 sp|O83514|RODA_TREPA -            433   3.9e-86  289.0  42.1   1   2   2.5e-36   3.7e-32  111.4  15.6     3   195    12   197    10   223 0.87 Cell cycle protein
FTSW_RODA_SPOVE      PF01098.14   359 sp|O83514|RODA_TREPA -            433   3.9e-86  289.0  42.1   2   2   2.3e-58   3.4e-54  183.9  18.4   164   356   235   431   228   433 0.94 Cell cycle protein
Sigma54_DBD          PF04552.8    160 sp|O83149|RP54_TREPA -            475   1.1e-36  125.7   0.2   1   1     7e-39   6.9e-36  123.1   0.2     3   155   308   474   306   475 0.86 Sigma-54, DNA binding domain
Sigma54_CBD          PF04963.8    194 sp|O83149|RP54_TREPA -            475   2.3e-18   66.3   0.2   1   2   4.1e-12     4e-09   36.1   0.2    16   114    89   193    76   204 0.81 Sigma-54 factor, core binding domain
Sigma54_CBD          PF04963.8    194 sp|O83149|RP54_TREPA -            475   2.3e-18   66.3   0.2   2   2     2e-09   1.9e-06   27.4   0.0   130   193   229   296   218   297 0.87 Sigma-54 factor, core binding domain
Sigma54_AID          PF00309.15    49 sp|O83149|RP54_TREPA -            475   3.2e-11   42.4   4.3   1   1     8e-14   7.9e-11   41.2   4.3     3    48     2    47     1    48 0.97 Sigma-54 factor, Activator interacting domain (AID)
LacI                 PF00356.16    46 sp|O83149|RP54_TREPA -            475   7.3e-05   22.2   0.0   2   2   1.2e-06    0.0012   18.3   0.0     2    23   357   378   356   386 0.89 Bacterial regulatory proteins, lacI family
HTH_IclR             PF09339.5     52 sp|O83149|RP54_TREPA -            475    0.0013   18.2   0.0   1   1   4.2e-06    0.0042   16.6   0.0    18    40   354   376   345   377 0.89 IclR helix-turn-helix domain
HTH_36               PF13730.1     55 sp|O83149|RP54_TREPA -            475    0.0014   18.7   0.2   2   2   0.00092      0.91    9.7   0.1    27    51   442   471   418   472 0.90 Helix-turn-helix domain
MarR_2               PF12802.2     62 sp|O83149|RP54_TREPA -            475    0.0028   17.2   0.0   1   1   9.4e-06    0.0093   15.6   0.0    21    43   354   376   344   377 0.85 MarR family
HTH_24               PF13412.1     48 sp|O83149|RP54_TREPA -            475    0.0047   16.2   0.3   2   2   0.00012      0.12   11.7   0.0    20    39   357   376   354   378 0.91 Winged helix-turn-helix DNA-binding
HTH_Tnp_ISL3         PF13542.1     52 sp|O83149|RP54_TREPA -            475    0.0052   15.9   1.5   1   1   1.4e-05     0.014   14.5   0.8    30    50   357   377   356   379 0.95 Helix-turn-helix domain of transposase family ISL3
HTH_3                PF01381.17    55 sp|O83149|RP54_TREPA -            475      0.03   14.1   0.0   1   1   9.5e-05     0.094   12.5   0.0    12    32   357   377   354   379 0.90 Helix-turn-helix
HTH_23               PF13384.1     50 sp|O83149|RP54_TREPA -            475     0.059   13.0   4.4   1   2   0.00041      0.41   10.3   0.0    19    43   356   381   350   386 0.82 Homeodomain-like domain
Alkyl_sulf_dimr      PF14863.1    141 sp|O83149|RP54_TREPA -            475       0.1   12.8   0.0   1   1   0.00031      0.31   11.2   0.0    33    62   334   363   329   377 0.90 Alkyl sulfatase dimerisation
HTH_31               PF13560.1     64 sp|O83149|RP54_TREPA -            475      0.11   12.7   1.3   1   2   0.00064      0.63   10.2   0.0    15    36   355   376   324   381 0.85 Helix-turn-helix domain
Ribul_P_3_epim       PF00834.14   201 sp|O66107|RPE_TREPA  -            218   3.4e-71  238.5   0.0   1   1   5.1e-75   3.8e-71  238.3   0.0     2   199     7   204     6   206 0.99 Ribulose-phosphate 3 epimerase family
IMPDH                PF00478.20   352 sp|O66107|RPE_TREPA  -            218     0.023   13.5   0.1   1   1   6.5e-06     0.048   12.5   0.1   189   246   150   206   145   209 0.77 IMP dehydrogenase / GMP reductase domain
Rib_5-P_isom_A       PF06026.9    173 sp|O83625|RPIA_TREPA -            254   1.4e-58  197.0   0.0   1   1   1.2e-62   1.7e-58  196.7   0.0     1   172    68   246    68   247 0.96 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
RNA_pol_L            PF01193.19    66 sp|O83242|RPOA_TREPA -            351   1.4e-21   75.3   0.0   1   1   4.4e-25   2.2e-21   74.7   0.0     2    65    33   238    32   239 0.96 RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_A_CTD        PF03118.10    67 sp|O83242|RPOA_TREPA -            351   5.3e-21   73.7   1.1   1   1   1.5e-24   7.6e-21   73.3   0.2     4    67   259   322   255   322 0.94 Bacterial RNA polymerase, alpha chain C terminal domain
RNA_pol_A_bac        PF01000.21   112 sp|O83242|RPOA_TREPA -            351   8.1e-13   48.5   0.0   1   1   3.3e-16   1.6e-12   47.5   0.0    13   110    75   169    63   188 0.89 RNA polymerase Rpb3/RpoA insert domain
RNA_pol_Rpb2_6       PF00562.23   386 sp|O83269|RPOB_TREPA -           1178  3.4e-155  516.5   0.0   2   2    1e-155  2.5e-152  507.1   0.0     2   386   687  1078   686  1078 0.97 RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_3       PF04565.11    68 sp|O83269|RPOB_TREPA -           1178     4e-28   96.9   0.0   1   1   3.1e-31   7.5e-28   96.0   0.0     1    68   484   553   484   553 0.99 RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_7       PF04560.15    82 sp|O83269|RPOB_TREPA -           1178   4.1e-28   97.4   0.0   1   1   3.6e-31     9e-28   96.3   0.0     1    80  1080  1154  1080  1156 0.96 RNA polymerase Rpb2, domain 7
RNA_pol_Rpb2_2       PF04561.9    190 sp|O83269|RPOB_TREPA -           1178   8.5e-27   93.8   0.2   1   2   7.8e-09   1.9e-05   24.1   0.0     1    72   158   229   158   274 0.85 RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_2       PF04561.9    190 sp|O83269|RPOB_TREPA -           1178   8.5e-27   93.8   0.2   2   2   4.2e-22     1e-18   67.4   0.1    84   190   315   425   309   425 0.95 RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_1       PF04563.10   203 sp|O83269|RPOB_TREPA -           1178     1e-21   76.8   0.1   1   1   7.3e-25   1.8e-21   76.0   0.1     1   202    25   479    25   480 0.95 RNA polymerase beta subunit
RNA_pol_Rpb2_45      PF10385.4     66 sp|O83269|RPOB_TREPA -           1178   1.9e-19   69.2   0.7   1   1   2.1e-22   5.3e-19   67.7   0.7     1    66   562   627   562   627 0.99 RNA polymerase beta subunit external 1 domain
RNA_pol_Rpb1_1       PF04997.7    337 sp|O83270|RPOC_TREPA -           1416  2.2e-102  342.8   0.0   1   1  3.3e-105  4.9e-102  341.6   0.0     2   337     5   331     4   331 0.94 RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_5       PF04998.12   277 sp|O83270|RPOC_TREPA -           1416   7.6e-84  281.2   1.0   1   1   1.1e-86   1.6e-83  280.1   1.0     1   276   733  1325   733  1326 1.00 RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_2       PF00623.15   166 sp|O83270|RPOC_TREPA -           1416   2.3e-52  177.3   0.2   1   1   2.8e-54   4.1e-51  173.2   0.0     1   165   333   474   333   475 0.95 RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3       PF04983.13   158 sp|O83270|RPOC_TREPA -           1416     3e-22   79.0   0.0   1   1   1.1e-24   1.7e-21   76.6   0.0     1   158   478   622   478   622 0.96 RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4       PF05000.12   108 sp|O83270|RPOC_TREPA -           1416   2.3e-16   59.4   0.1   1   1   3.9e-19   5.8e-16   58.1   0.1     1   100   651   723   651   731 0.82 RNA polymerase Rpb1, domain 4
Peptidase_M23        PF01551.17    96 sp|O83270|RPOC_TREPA -           1416   3.6e-08   33.3   0.5   3   3   4.4e-08   6.5e-05   22.9   0.0    11    69  1155  1214  1149  1217 0.84 Peptidase family M23
Sigma70_r3           PF04539.11    78 sp|O83506|RPOD_TREPA -            611   2.7e-27   94.4   1.1   1   1   7.7e-30   1.1e-26   92.4   0.3     1    75   456   530   456   533 0.97 Sigma-70 region 3
Sigma70_r2           PF04542.9     71 sp|O83506|RPOD_TREPA -            611   2.1e-22   78.4   0.1   1   1   5.2e-25   7.7e-22   76.6   0.1     1    71   377   447   377   447 0.98 Sigma-70 region 2
Sigma70_r4           PF04545.11    50 sp|O83506|RPOD_TREPA -            611   2.5e-19   68.3   7.3   3   3   1.9e-20   2.8e-17   61.7   0.7     2    50   546   598   545   598 0.96 Sigma-70, region 4
Sigma70_r1_2         PF00140.15    37 sp|O83506|RPOD_TREPA -            611     4e-14   51.9   0.5   1   1   1.2e-16   1.8e-13   49.8   0.5     1    33   117   149   117   153 0.95 Sigma-70 factor, region 1.2
Sigma70_r1_1         PF03979.9     82 sp|O83506|RPOD_TREPA -            611   7.7e-14   51.3   0.7   1   1   1.6e-16   2.4e-13   49.8   0.7     5    69     6    67     2    81 0.85 Sigma-70 factor, region 1.1
Exonuc_VII_L         PF02601.10   319 sp|O83506|RPOD_TREPA -            611   0.00025   20.3   0.7   2   2   1.2e-05     0.018   14.2   0.0    95   144   490   539   482   564 0.83 Exonuclease VII, large subunit
HTH_15               PF12324.3     77 sp|O83506|RPOD_TREPA -            611     0.021   14.4   0.2   2   2    0.0004       0.6    9.8   0.0    36    58   473   495   455   502 0.86 Helix-turn-helix domain of alkylmercury lyase
DUF2262              PF10020.4    150 sp|O83506|RPOD_TREPA -            611     0.042   14.0   2.1   2   2   0.00028      0.42   10.8   0.1     5    58   414   464   411   500 0.76 Uncharacterized protein conserved in bacteria (DUF2262)
Sigma70_r4_2         PF08281.7     54 sp|O83506|RPOD_TREPA -            611      0.29   10.6   2.8   1   1   0.00049      0.72    9.3   0.2     2    32   540   570   539   596 0.87 Sigma-70, region 4
RNA_pol_Rpb6         PF01192.17    57 sp|O83699|RPOZ_TREPA -             67   1.8e-11   43.6   0.0   1   1   1.3e-15     2e-11   43.4   0.0     1    57     6    61     6    61 0.95 RNA polymerase Rpb6
RRF                  PF01765.14   165 sp|O83613|RRF_TREPA  -            183   6.9e-62  207.7   1.6   1   1   1.1e-65     8e-62  207.5   1.6     2   165    18   181    17   181 0.99 Ribosome recycling factor
SBP_bac_3            PF00497.15   225 sp|O83613|RRF_TREPA  -            183     0.036   13.3   0.2   1   2   9.4e-06      0.07   12.3   0.0   137   209    14    83     3    87 0.86 Bacterial extracellular solute-binding proteins, family 3
Ribosomal_S10        PF00338.17    97 sp|O83218|RS10_TREPA -            102   1.7e-35  120.7   0.1   1   1   1.2e-39   1.8e-35  120.6   0.1     1    96     6   101     6   102 0.99 Ribosomal protein S10p/S20e
Ribosomal_S11        PF00411.14   110 sp|O83241|RS11_TREPA -            126   6.6e-45  151.8   0.2   1   1   5.3e-49   7.9e-45  151.5   0.2     1   110    16   125    16   125 0.99 Ribosomal protein S11
Ribosom_S12_S23      PF00164.20   122 sp|O83271|RS12_TREPA -            124   2.6e-55  185.0   1.2   1   1   1.9e-59   2.9e-55  184.9   1.2     1   122     2   123     2   123 0.99 Ribosomal protein S12/S23
Ribosomal_S13        PF00416.17   107 sp|O83240|RS13_TREPA -            121   1.4e-34  118.7   0.4   1   1   2.2e-38   1.6e-34  118.5   0.4     1   107     3   108     3   108 0.97 Ribosomal protein S13/S18
FbpA                 PF05833.6    455 sp|O83240|RS13_TREPA -            121      0.03   12.8   0.0   1   1   4.3e-06     0.032   12.7   0.0   185   234    10    58     3    93 0.85 Fibronectin-binding protein A N-terminus (FbpA)
Ribosomal_S14        PF00253.16    55 sp|O83232|RS14Z_TREPA -             61   2.1e-22   78.2   5.1   1   1   1.6e-26   2.3e-22   78.0   5.1     4    55    11    60     7    60 0.89 Ribosomal protein S14p/S29e
Ribosomal_S15        PF00312.17    83 sp|O83857|RS15_TREPA -             89   3.6e-25   87.5   0.1   1   1   2.7e-29   4.1e-25   87.3   0.1     2    83     7    88     6    88 0.97 Ribosomal protein S15
Ribosomal_S16        PF00886.14    62 sp|O83875|RS16_TREPA -            123   4.7e-23   80.6   0.0   1   2   6.9e-27     1e-22   79.5   0.1     2    62    10    68     9    68 0.94 Ribosomal protein S16
Ribosomal_S17        PF00366.15    69 sp|O83228|RS17_TREPA -             84   1.5e-27   95.3   1.7   1   1   3.7e-31   1.8e-27   95.1   1.7     1    68    11    78    11    79 0.98 Ribosomal protein S17
PBC                  PF03792.8    192 sp|O83228|RS17_TREPA -             84     0.032   13.9   0.3   1   1   6.4e-06     0.032   13.9   0.3   112   166    29    82     6    84 0.91 PBC domain
FliO                 PF04347.8     84 sp|O83228|RS17_TREPA -             84     0.048   13.6   0.1   1   1   1.5e-05     0.074   13.1   0.1    10    40    52    82    37    83 0.88 Flagellar biosynthesis protein, FliO
Ribosomal_S18        PF01084.15    54 sp|O83100|RS18_TREPA -             99   4.1e-25   87.3   0.2   1   1   3.6e-29   5.4e-25   87.0   0.2     5    54    44    93    40    93 0.95 Ribosomal protein S18
Ribosomal_S19        PF00203.16    81 sp|O83223|RS19_TREPA -             95   1.2e-31  108.1   0.8   1   1   9.4e-36   1.4e-31  107.9   0.8     1    81     3    86     3    86 0.91 Ribosomal protein S19
Ribosomal_S21        PF01165.15    57 sp|O83739|RS21_TREPA -             69     1e-20   72.9   5.9   1   1   2.7e-24   1.3e-20   72.5   5.9     2    57     3    58     2    58 0.97 Ribosomal protein S21
AKAP7_NLS            PF10469.4    209 sp|O83739|RS21_TREPA -             69      0.06   13.0   0.3   1   1   1.3e-05     0.065   12.9   0.3   110   159     7    58     2    69 0.75 AKAP7 2'5' RNA ligase-like domain
Siva                 PF05458.7    175 sp|O83739|RS21_TREPA -             69      0.13   11.7   0.1   1   1   2.9e-05      0.14   11.6   0.1    19    67    17    66     4    68 0.82 Cd27 binding protein (Siva)
Ribosomal_S2         PF00318.15   211 sp|O83615|RS2_TREPA  -            291   4.3e-88  294.0   0.0   1   1   1.7e-91   5.1e-88  293.7   0.0     1   209     9   223     9   225 0.99 Ribosomal protein S2
Baculo_p47           PF05112.7    313 sp|O83615|RS2_TREPA  -            291     0.014   14.7   0.2   1   1   6.7e-06      0.02   14.3   0.2   153   258     7   119     1   126 0.77 Baculovirus P47 protein
XkdN                 PF08890.6    136 sp|O83615|RS2_TREPA  -            291     0.015   15.0   0.4   1   1   9.7e-06     0.029   14.1   0.4    20    65   110   157   100   172 0.86 Phage XkdN-like protein
Uds1                 PF15456.1    124 sp|O83615|RS2_TREPA  -            291     0.039   13.9   0.8   2   2   5.3e-05      0.16   11.9   0.1    15    42   125   152   123   157 0.89 Up-regulated During Septation
Ribosomal_S3_C       PF00189.15    85 sp|O83225|RS3_TREPA  -            247   2.6e-30  104.4   0.6   2   2   5.7e-34   4.2e-30  103.7   0.1     2    85   122   204   121   204 0.96 Ribosomal protein S3, C-terminal domain
KH_2                 PF07650.12    78 sp|O83225|RS3_TREPA  -            247   1.7e-18   65.9   4.5   1   1   4.2e-22   3.1e-18   65.0   4.5     8    77    47   112    39   113 0.94 KH domain
S4                   PF01479.20    48 sp|O83328|RS4_TREPA  -            204     7e-17   60.5   0.0   1   1   2.7e-20   1.3e-16   59.6   0.0     1    48    95   142    95   142 0.99 S4 domain
Ribosomal_S4         PF00163.14    94 sp|O83328|RS4_TREPA  -            204   2.8e-16   59.6   0.8   1   1   9.4e-20   4.6e-16   58.9   0.3     4    94     4    94     1    94 0.88 Ribosomal protein S4/S9 N-terminal domain
mRNA_triPase         PF02940.10   215 sp|O83328|RS4_TREPA  -            204     0.093   12.4   0.3   1   1   2.5e-05      0.12   12.0   0.3    42   120    42   138    37   162 0.72 mRNA capping enzyme, beta chain
Ribosomal_S5_C       PF03719.10    74 sp|O83236|RS5_TREPA  -            172   1.1e-26   91.8   1.6   1   1   2.2e-30   1.7e-26   91.3   1.6     1    74    91   164    91   164 0.98 Ribosomal protein S5, C-terminal domain
Ribosomal_S5         PF00333.15    67 sp|O83236|RS5_TREPA  -            172   8.8e-26   89.4   0.7   1   1   2.3e-29   1.7e-25   88.5   0.7     1    63    16    78    16    82 0.97 Ribosomal protein S5, N-terminal domain
Ribosomal_S6         PF01250.12    92 sp|O83102|RS6_TREPA  -             93   2.5e-19   68.8   0.0   1   1   1.9e-23   2.8e-19   68.7   0.0     1    91     2    90     2    91 0.96 Ribosomal protein S6
Ribosomal_S7         PF00177.16   148 sp|O83272|RS7_TREPA  -            156   3.5e-58  195.3   0.2   1   1   2.6e-62   3.9e-58  195.2   0.2     1   148     1   149     1   149 0.98 Ribosomal protein S7p/S5e
Ribosomal_S8         PF00410.14   129 sp|O83233|RS8_TREPA  -            132   3.1e-47  159.6   0.0   1   1   2.3e-51   3.4e-47  159.4   0.0     1   129     5   132     5   132 0.97 Ribosomal protein S8
Ribosomal_S9         PF00380.14   121 sp|O83987|RS9_TREPA  -            129   9.7e-43  145.2   2.3   1   1   7.3e-47   1.1e-42  145.1   2.3     1   121     9   129     9   129 1.00 Ribosomal protein S9/S16
RrnaAD               PF00398.15   262 sp|O83357|RSMA_TREPA -            285   1.8e-39  135.3   0.0   1   1   6.8e-43     2e-39  135.1   0.0     3   260    22   281    20   283 0.91 Ribosomal RNA adenine dimethylase
Methyltransf_26      PF13659.1    117 sp|O83357|RSMA_TREPA -            285   9.7e-06   25.6   0.1   1   1   5.8e-09   1.7e-05   24.8   0.0     1    82    50   126    50   215 0.88 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|O83357|RSMA_TREPA -            285   2.2e-05   25.0   0.0   1   1   1.6e-08   4.9e-05   23.8   0.0     2    66    50   109    49   152 0.79 Methyltransferase domain
MTS                  PF05175.9    170 sp|O83357|RSMA_TREPA -            285     0.019   14.3   0.0   1   1   9.4e-06     0.028   13.8   0.0    23    95    41   107    38   150 0.80 Methyltransferase small domain
Methyltransf_23      PF13489.1    161 sp|O83357|RSMA_TREPA -            285     0.036   13.7   0.0   2   2   5.5e-05      0.16   11.6   0.0    15    55    43    84    29   182 0.77 Methyltransferase domain
Methyltrans_RNA      PF04452.9    225 sp|O83075|RSME_TREPA -            266   8.3e-47  159.1   0.0   1   1   1.3e-50   9.6e-47  158.9   0.0     2   224    19   241    18   242 0.95 RNA methyltransferase
DUF1402              PF07182.6    304 sp|O83075|RSME_TREPA -            266      0.16   10.8   0.0   1   1   3.2e-05      0.24   10.2   0.0    63   124    94   159    87   173 0.77 Protein of unknown function (DUF1402)
GidB                 PF02527.10   184 sp|O66106|RSMG_TREPA -            222   6.5e-57  191.6   0.0   1   1   2.7e-60   8.1e-57  191.3   0.0     2   183    27   210    26   211 0.94 rRNA small subunit methyltransferase G
Methyltransf_31      PF13847.1    152 sp|O66106|RSMG_TREPA -            222     2e-07   30.6   0.0   1   1   1.1e-10   3.1e-07   30.0   0.0     5   117    74   181    70   207 0.83 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|O66106|RSMG_TREPA -            222   4.3e-05   24.0   0.0   1   1   2.5e-08   7.3e-05   23.3   0.0     4   108    75   173    72   176 0.80 Methyltransferase domain
MTS                  PF05175.9    170 sp|O66106|RSMG_TREPA -            222   0.00018   20.9   0.0   1   1   9.2e-08   0.00027   20.3   0.0    31   102    72   146    48   151 0.84 Methyltransferase small domain
Methyltransf_4       PF02390.12   197 sp|O66106|RSMG_TREPA -            222   0.00044   19.3   0.0   1   2   5.8e-06     0.017   14.1   0.0    21    85    74   142    47   150 0.84 Putative methyltransferase
Methyltransf_5       PF01795.14   310 sp|O83399|RSMH_TREPA -            379  2.1e-121  404.9   0.0   1   1  1.1e-124  2.4e-121  404.8   0.0     2   310    27   379    26   379 0.96 MraW methylase family
Methyltransf_18      PF12847.2    112 sp|O83399|RSMH_TREPA -            379   0.00052   20.5   0.0   1   2   6.4e-06     0.013   16.0   0.0    11    56    69   112    64   200 0.76 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|O83399|RSMH_TREPA -            379    0.0049   16.8   7.5   1   1   2.4e-05      0.05   13.6   7.5     5   115    64   310    60   312 0.70 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|O83399|RSMH_TREPA -            379     0.012   16.0   0.0   1   2   7.5e-05      0.16   12.4   0.0     5    45    68   109    64   125 0.86 Methyltransferase domain
DUF3619              PF12279.3    131 sp|O83399|RSMH_TREPA -            379     0.036   14.1   0.4   1   1   3.6e-05     0.077   13.0   0.4    11    79   181   248   174   253 0.86 Protein of unknown function (DUF3619)
Methyltransf_12      PF08242.7     99 sp|O83399|RSMH_TREPA -            379     0.065   13.7   0.0   1   2    0.0002      0.42   11.1   0.0     6    42    69   105    67   115 0.90 Methyltransferase domain
Ubie_methyltran      PF01209.13   233 sp|O83399|RSMH_TREPA -            379     0.075   12.1   0.0   2   2   0.00037      0.78    8.7   0.0   131   172   288   329   267   334 0.88 ubiE/COQ5 methyltransferase family
TP_methylase         PF00590.15   210 sp|O83940|RSMI_TREPA -            274   9.6e-26   90.7   3.1   1   1   1.7e-29   2.6e-25   89.3   3.1     1   205     3   247     3   251 0.78 Tetrapyrrole (Corrin/Porphyrin) Methylases
Rubredoxin           PF00301.15    47 sp|O83956|RUBR_TREPA -             52   3.5e-22   78.0   1.8   1   1   1.3e-25   3.8e-22   77.8   1.8     2    47     4    49     3    49 0.98 Rubredoxin
Elf1                 PF05129.8     81 sp|O83956|RUBR_TREPA -             52     0.018   14.7   0.1   2   2   5.2e-05      0.15   11.7   0.0    15    37    29    51    22    52 0.84 Transcription elongation factor Elf1 like
zf-Sec23_Sec24       PF04810.10    40 sp|O83956|RUBR_TREPA -             52     0.034   13.7   1.0   2   2   6.8e-05       0.2   11.2   0.1    24    32    36    44    28    50 0.81 Sec23/Sec24 zinc finger
zf-RanBP             PF00641.13    30 sp|O83956|RUBR_TREPA -             52      0.12   11.5   1.8   2   2   4.1e-05      0.12   11.4   0.2     3    13    35    45    33    45 0.87 Zn-finger in Ran binding protein and others
RuvA_N               PF01330.16    61 sp|O83554|RUVA_TREPA -            227   6.7e-19   67.4   0.0   1   1   1.4e-21   1.5e-18   66.3   0.0     1    61     1    62     1    62 1.00 RuvA N terminal domain
HHH_5                PF14520.1     60 sp|O83554|RUVA_TREPA -            227     1e-10   41.6   0.0   1   1   2.5e-13   2.6e-10   40.2   0.0     3    59    71   129    69   129 0.87 Helix-hairpin-helix domain
HHH                  PF00633.18    30 sp|O83554|RUVA_TREPA -            227   8.1e-07   28.4   0.4   1   2   0.00037      0.39   10.5   0.0    13    29    75    91    74    92 0.88 Helix-hairpin-helix motif
HHH                  PF00633.18    30 sp|O83554|RUVA_TREPA -            227   8.1e-07   28.4   0.4   2   2   1.2e-05     0.013   15.2   0.0    13    26   110   123   109   128 0.92 Helix-hairpin-helix motif
HHH_8                PF14716.1     68 sp|O83554|RUVA_TREPA -            227   0.00034   20.7   0.3   2   2   7.6e-05     0.081   13.1   0.1    43    63   103   124    88   129 0.75 Helix-hairpin-helix domain
IMS_HHH              PF11798.3     32 sp|O83554|RUVA_TREPA -            227    0.0005   19.9   0.0   2   2   6.3e-05     0.066   13.2   0.0    13    27   110   125   105   129 0.84 IMS family HHH motif
Ribosomal_S13        PF00416.17   107 sp|O83554|RUVA_TREPA -            227    0.0012   19.3   0.1   1   2   0.00079      0.84   10.1   0.0     8    34    66    92    59   107 0.83 Ribosomal protein S13/S18
Transposase_20       PF02371.11    87 sp|O83554|RUVA_TREPA -            227    0.0019   18.2   0.1   2   2   0.00016      0.17   11.9   0.0     3    23   109   130   107   143 0.82 Transposase IS116/IS110/IS902 family
RuvA_C               PF07499.8     47 sp|O83554|RUVA_TREPA -            227    0.0082   16.2   1.5   2   2   0.00012      0.12   12.5   0.9     4    30   165   194   162   215 0.72 RuvA, C-terminal domain
DUF3173              PF11372.3     59 sp|O83554|RUVA_TREPA -            227       0.1   12.2   0.0   1   1   0.00019       0.2   11.2   0.0     8    40   170   202   167   206 0.92 Domain of unknown function (DUF3173)
Cdd1                 PF11731.3     93 sp|O83554|RUVA_TREPA -            227      0.13   12.1   0.0   1   1   0.00085       0.9    9.5   0.0     8    28   104   124    63   131 0.88 Pathogenicity locus
RuvB_N               PF05496.7    234 sp|P96115|RUVB_TREPA -            350  1.2e-104  348.5   0.0   1   1  2.1e-107  1.5e-104  348.1   0.0     6   233    13   239     8   240 0.97 Holliday junction DNA helicase ruvB N-terminus
RuvB_C               PF05491.8     76 sp|P96115|RUVB_TREPA -            350   1.2e-30  104.8   0.0   1   1     3e-33   2.2e-30  104.0   0.0     1    75   257   331   257   332 0.98 Holliday junction DNA helicase ruvB C-terminus
AAA                  PF00004.24   132 sp|P96115|RUVB_TREPA -            350   8.4e-16   58.3   0.0   1   1   4.5e-18   3.3e-15   56.4   0.0     2   131    60   183    59   184 0.94 ATPase family associated with various cellular activities (AAA)
AAA_5                PF07728.9    139 sp|P96115|RUVB_TREPA -            350   5.1e-06   26.2   0.0   1   2   5.9e-05     0.044   13.5   0.1     1    19    58    76    58    91 0.85 AAA domain (dynein-related subfamily)
AAA_5                PF07728.9    139 sp|P96115|RUVB_TREPA -            350   5.1e-06   26.2   0.0   2   2   0.00047      0.35   10.6   0.0    60   139   102   176    93   176 0.78 AAA domain (dynein-related subfamily)
Mg_chelatase         PF01078.16   207 sp|P96115|RUVB_TREPA -            350   0.00021   20.5   0.0   1   2   2.2e-05     0.016   14.3   0.0     2    40    29    74    28    83 0.73 Magnesium chelatase, subunit ChlI
AAA_22               PF13401.1    131 sp|P96115|RUVB_TREPA -            350   0.00036   20.6   0.6   1   2   0.00014       0.1   12.7   0.0     5    22    57    74    50   100 0.86 AAA domain
AAA_16               PF13191.1    185 sp|P96115|RUVB_TREPA -            350   0.00037   20.5   0.1   1   2   8.6e-05     0.064   13.2   0.0     6    42    36    74    31    80 0.76 AAA ATPase domain
TIP49                PF06068.8    398 sp|P96115|RUVB_TREPA -            350   0.00047   18.9   0.0   1   2   5.3e-05      0.04   12.6   0.0    25    78    31    84    13    91 0.89 TIP49 C-terminus
Sigma54_activat      PF00158.21   168 sp|P96115|RUVB_TREPA -            350    0.0034   16.8   0.0   2   2   0.00026      0.19   11.1   0.0    91   137   105   151    91   167 0.82 Sigma-54 interaction domain
NTPase_1             PF03266.10   168 sp|P96115|RUVB_TREPA -            350    0.0034   17.1   0.1   1   1     4e-05      0.03   14.0   0.0     1    32    58    88    58    93 0.87 NTPase
AAA_19               PF13245.1     76 sp|P96115|RUVB_TREPA -            350    0.0046   16.6   1.0   1   1   1.8e-05     0.014   15.1   0.0    12    35    56    80    43   119 0.78 Part of AAA domain
AAA_17               PF13207.1    121 sp|P96115|RUVB_TREPA -            350     0.011   16.5   0.0   1   1   4.1e-05      0.03   15.1   0.0     3    77    60   142    59   236 0.60 AAA domain
AAA_PrkA             PF08298.6    358 sp|P96115|RUVB_TREPA -            350     0.025   13.2   0.0   1   1   4.8e-05     0.035   12.7   0.0    60   107    29    75    17    99 0.83 PrkA AAA domain
AAA_14               PF13173.1    128 sp|P96115|RUVB_TREPA -            350     0.026   14.4   0.0   1   1   7.9e-05     0.059   13.2   0.0     5    86    59   133    57   148 0.65 AAA domain
AAA_33               PF13671.1    143 sp|P96115|RUVB_TREPA -            350     0.027   14.3   0.0   1   2   0.00024      0.18   11.6   0.0     3    24    60    81    59   126 0.87 AAA domain
AAA_3                PF07726.6    131 sp|P96115|RUVB_TREPA -            350     0.032   13.8   0.0   1   1   0.00064      0.47   10.0   0.0     1    45    58   102    58   142 0.76 ATPase family associated with various cellular activities (AAA)
PhoH                 PF02562.11   205 sp|P96115|RUVB_TREPA -            350     0.077   12.2   0.0   1   1   0.00033      0.24   10.5   0.0    18    44    55    81    36    88 0.76 PhoH-like protein
IstB_IS21            PF01695.12   178 sp|P96115|RUVB_TREPA -            350      0.13   11.6   0.0   1   1   0.00037      0.27   10.6   0.0    49    65    58    74    34    92 0.80 IstB-like ATP binding protein
NB-ARC               PF00931.17   287 sp|P96115|RUVB_TREPA -            350      0.22   10.3   0.0   1   1   0.00047      0.35    9.6   0.0    16    37    53    74    39    78 0.87 NB-ARC domain
RuvC                 PF02075.12   149 sp|O83530|RUVC_TREPA -            196   1.5e-65  219.6   2.1   1   1   2.5e-69   1.8e-65  219.2   2.1     1   149    19   167    19   167 1.00 Crossover junction endodeoxyribonuclease RuvC
DUF460               PF04312.8    138 sp|O83530|RUVC_TREPA -            196       0.1   12.1   0.1   1   2   1.4e-05       0.1   12.1   0.1    20    54     6    40     1    52 0.74 Protein of unknown function (DUF460)
AAA_23               PF13476.1    202 sp|O83635|SBCC_TREPA -           1047   2.5e-18   67.1  31.4   1   1   3.7e-20   3.9e-17   63.2  16.6     1   195     5   271     5   657 0.84 AAA domain
SbcCD_C              PF13558.1     90 sp|O83635|SBCC_TREPA -           1047   6.9e-12   45.1   0.1   1   1   1.7e-14   1.8e-11   43.7   0.1    27    89   944  1004   923  1005 0.86 Putative exonuclease SbcCD, C subunit
AAA_29               PF13555.1     62 sp|O83635|SBCC_TREPA -           1047   3.4e-10   39.3   0.0   1   1   7.7e-13   8.2e-10   38.0   0.0     3    50     5    53     4    59 0.94 P-loop containing region of AAA domain
SMC_N                PF02463.14   220 sp|O83635|SBCC_TREPA -           1047   5.4e-07   29.0   0.0   1   1   5.9e-09   6.3e-06   25.5   0.0    26   201    28  1022     5  1039 0.93 RecF/RecN/SMC N terminal domain
AAA_19               PF13245.1     76 sp|O83635|SBCC_TREPA -           1047   0.00043   19.9   0.1   1   1   1.9e-06     0.002   17.8   0.1     8    58    25    80    20    96 0.76 Part of AAA domain
NACHT                PF05729.7    166 sp|O83635|SBCC_TREPA -           1047     0.023   14.3   0.5   1   2   0.00052      0.56    9.8   0.0     4    25    30    51    28    84 0.87 NACHT domain
MobB                 PF03205.9    140 sp|O83635|SBCC_TREPA -           1047      0.03   14.0   0.0   1   1   8.2e-05     0.087   12.5   0.0     1    24    27    50    27    58 0.87 Molybdopterin guanine dinucleotide synthesis protein B
AAA_22               PF13401.1    131 sp|O83635|SBCC_TREPA -           1047     0.065   13.3   0.0   1   1   6.2e-05     0.065   13.3   0.0     6    41    28    62    24   112 0.74 AAA domain
AAA_21               PF13304.1    303 sp|O83635|SBCC_TREPA -           1047     0.079   12.9   0.0   1   1   0.00014      0.15   12.0   0.0     3    23    30    50    28    95 0.72 AAA domain
AAA_33               PF13671.1    143 sp|O83635|SBCC_TREPA -           1047      0.11   12.3   0.0   1   2    0.0001      0.11   12.3   0.0     2    72    29   104    28   138 0.53 AAA domain
ABC_tran             PF00005.22   137 sp|O83635|SBCC_TREPA -           1047       0.3   11.3   0.0   1   2   0.00029       0.3   11.3   0.0    11    32    26    47    19    68 0.88 ABC transporter
AAA_10               PF12846.2    304 sp|O83635|SBCC_TREPA -           1047       0.5    9.7   7.4   1   3   0.00051      0.54    9.6   0.0     2    25    27    50    26    54 0.87 AAA-like domain
SecA_DEAD            PF07517.9    266 sp|O83394|SECA_TREPA -            916  6.4e-115  383.0   0.6   1   1    4e-118    1e-114  382.3   0.1     4   265    10   408     7   409 0.99 SecA DEAD-like domain
SecA_SW              PF07516.8    214 sp|O83394|SECA_TREPA -            916   8.3e-57  192.4   3.2   1   1   7.6e-60   1.9e-56  191.2   3.2     1   213   639   851   639   852 0.96 SecA Wing and Scaffold domain
SecA_PP_bind         PF01043.15   114 sp|O83394|SECA_TREPA -            916   1.8e-35  121.7   0.1   1   1   1.8e-38   4.5e-35  120.4   0.1     2   114   230   365   229   365 0.96 SecA preprotein cross-linking domain
SEC-C                PF02810.10    21 sp|O83394|SECA_TREPA -            916   1.1e-09   37.5  12.4   1   1   7.3e-13   1.8e-09   36.8  12.4     1    19   898   916   898   916 0.97 SEC-C motif
DEAD                 PF00270.24   169 sp|O83394|SECA_TREPA -            916   3.5e-06   26.6   0.0   1   1   3.5e-09   8.6e-06   25.3   0.0    15   133    97   217    84   242 0.82 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|O83394|SECA_TREPA -            916     0.011   15.5   0.6   1   2   0.00027      0.66    9.8   0.0     2    50   475   521   474   522 0.91 Helicase conserved C-terminal domain
SecD_SecF            PF02355.11   189 sp|O83425|SECD_TREPA -            583   4.3e-20   71.6   6.9   1   1   1.8e-23   6.8e-20   71.0   6.9    12   180   394   559   383   566 0.88 Protein export membrane protein
MMPL                 PF03176.10   333 sp|O83425|SECD_TREPA -            583   4.3e-10   38.8   7.0   1   1     2e-13   7.3e-10   38.0   7.0   128   292   398   555   309   582 0.74 MMPL family
ACR_tran             PF00873.14  1021 sp|O83425|SECD_TREPA -            583   2.8e-07   28.4   8.7   1   1   1.1e-10   4.2e-07   27.8   8.7   327   478   409   558   388   562 0.83 AcrB/AcrD/AcrF family
Sec_GG               PF07549.9     31 sp|O83425|SECD_TREPA -            583   0.00011   21.2   0.0   1   1   6.6e-08   0.00024   20.1   0.0     9    30   143   164   139   165 0.89 SecD/SecF GG Motif
SecE                 PF00584.15    57 sp|O83263|SECE_TREPA -             59   2.1e-17   62.4   4.3   1   1   3.1e-21   2.3e-17   62.3   4.3     1    57     3    59     3    59 0.98 SecE/Sec61-gamma subunits of protein translocation complex
Caveolin             PF01146.12   148 sp|O83263|SECE_TREPA -             59      0.16   11.5   2.5   1   1   2.4e-05      0.18   11.4   2.5    54    96    18    58    10    59 0.91 Caveolin
SecD_SecF            PF02355.11   189 sp|O83426|SECF_TREPA -            420   2.5e-62  209.4  16.8   1   1   5.1e-66   3.8e-62  208.8  16.8     9   187   230   409   222   411 0.96 Protein export membrane protein
SecG                 PF03840.9     74 sp|O83547|SECG_TREPA -            133   5.9e-18   64.3   7.4   1   2     4e-22   5.9e-18   64.3   7.4     3    73     7    75     5    76 0.95 Preprotein translocase SecG subunit
FKBP_C               PF00254.23    94 sp|O83369|SLYD_TREPA -            176   5.9e-12   45.4   0.0   1   1   1.1e-15   8.5e-12   44.9   0.0     8    92     6   135     2   137 0.77 FKBP-type peptidyl-prolyl cis-trans isomerase
CbiA                 PF01656.18   195 sp|O83296|SOJ_TREPA  -            253     6e-41  140.0   0.1   1   1   4.3e-44     7e-41  139.7   0.1     2   195     6   218     5   218 0.86 CobQ/CobB/MinD/ParA nucleotide binding domain
AAA_31               PF13614.1    157 sp|O83296|SOJ_TREPA  -            253   6.7e-12   45.6   0.0   1   1   6.5e-15   1.1e-11   44.9   0.0     2   153     4   150     3   153 0.81 AAA domain
MipZ                 PF09140.6    261 sp|O83296|SOJ_TREPA  -            253   7.6e-10   38.3   0.1   1   1   6.8e-12   1.1e-08   34.4   0.1     2   132     4   149     3   167 0.71 ATPase MipZ
Fer4_NifH            PF00142.13   273 sp|O83296|SOJ_TREPA  -            253   1.6e-09   37.3   0.0   1   2     5e-07   0.00082   18.6   0.0     5    60     8    62     4    78 0.77 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
Fer4_NifH            PF00142.13   273 sp|O83296|SOJ_TREPA  -            253   1.6e-09   37.3   0.0   2   2   1.6e-06    0.0026   16.9   0.0   141   249   137   250   104   252 0.80 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
ArsA_ATPase          PF02374.10   305 sp|O83296|SOJ_TREPA  -            253   2.5e-09   36.6   0.6   1   2   1.4e-11   2.4e-08   33.4   0.6     3    49     5    51     3   143 0.88 Anion-transporting ATPase
YhjQ                 PF06564.7    244 sp|O83296|SOJ_TREPA  -            253   1.6e-05   24.4   0.0   1   1   5.6e-08   9.3e-05   21.9   0.0     9   232    10   243     3   252 0.68 YhjQ protein
SRP54                PF00448.17   196 sp|O83296|SOJ_TREPA  -            253      0.01   15.2   1.1   1   2   9.5e-05      0.16   11.4   0.2    11    38    13    40     3    43 0.88 SRP54-type protein, GTPase domain
VirC1                PF07015.6    231 sp|O83296|SOJ_TREPA  -            253     0.018   14.1   0.1   1   1   2.2e-05     0.037   13.1   0.1     4    39     5    40     2    53 0.87 VirC1 protein
AAA_10               PF12846.2    304 sp|O83296|SOJ_TREPA  -            253      0.13   11.6   0.0   1   1   0.00011      0.18   11.1   0.0    11    68    13    73     8   117 0.71 AAA-like domain
SmpB                 PF01668.13    68 sp|O83214|SSRP_TREPA -            154   4.5e-28   96.8   0.0   1   1   4.5e-32   6.7e-28   96.2   0.0     2    66     8    72     7    74 0.96 SmpB protein
SurE                 PF01975.12   197 sp|O83434|SURE_TREPA -            187   2.6e-52  177.0   0.3   1   1     2e-56   2.9e-52  176.8   0.3     1   173     1   168     1   185 0.89 Survival protein SurE
tRNA-synt_2c         PF01411.14   552 sp|O83980|SYA_TREPA  -            605  2.1e-135  452.1   0.0   1   1  3.5e-139  2.6e-135  451.8   0.0     2   436    10   448     9   493 0.92 tRNA synthetases class II (A)
tRNA_SAD             PF07973.9     44 sp|O83980|SYA_TREPA  -            605   8.8e-16   57.5   1.3   2   2   2.4e-19   1.7e-15   56.5   0.2     1    43   552   594   552   595 0.98 Threonyl and Alanyl tRNA synthetase second additional domain
tRNA-synt_1e         PF01406.14   301 sp|O83129|SYC_TREPA  -            520   3.3e-81  272.7   0.0   1   1   5.2e-83   1.5e-79  267.2   0.0     2   299    16   348    15   350 0.90 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1g         PF09334.6    391 sp|O83129|SYC_TREPA  -            520   4.8e-05   22.1   0.3   1   2   6.5e-05      0.19   10.3   0.1    12    84    35   117    31   158 0.73 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|O83129|SYC_TREPA  -            520   4.8e-05   22.1   0.3   2   2   9.3e-05      0.28    9.8   0.0   326   373   300   347   286   353 0.88 tRNA synthetases class I (M)
DALR_2               PF09190.6     63 sp|O83129|SYC_TREPA  -            520   7.4e-05   22.9   0.1   1   1   8.4e-08   0.00025   21.2   0.1     2    26   400   424   399   454 0.81 DALR domain
tRNA-synt_1d         PF00750.14   354 sp|O83129|SYC_TREPA  -            520      0.05   12.4   0.1   1   1   2.6e-05     0.077   11.8   0.1    28    70    30    72     4    77 0.78 tRNA synthetases class I (R)
tRNA-synt_2          PF00152.15   335 sp|O83950|SYDND_TREPA -            602  3.1e-124  414.1   0.0   1   1  1.2e-127  3.7e-124  413.8   0.0     2   334   138   575   137   576 0.96 tRNA synthetases class II (D, K and N)
GAD                  PF02938.9     95 sp|O83950|SYDND_TREPA -            602   1.2e-24   86.2   0.0   1   1     7e-28   2.1e-24   85.5   0.0     1    92   328   418   328   422 0.95 GAD domain
tRNA_anti-codon      PF01336.20    75 sp|O83950|SYDND_TREPA -            602     2e-12   46.7   0.0   1   1   1.3e-15   3.8e-12   45.9   0.0     1    74    35   119    35   120 0.89 OB-fold nucleic acid binding domain
tRNA-synt_2d         PF01409.15   247 sp|O83950|SYDND_TREPA -            602    0.0065   15.6   0.2   1   2   0.00021      0.62    9.2   0.1   104   159   228   281   217   293 0.77 tRNA synthetases class II core domain (F)
tRNA-synt_2b         PF00587.20   173 sp|O83950|SYDND_TREPA -            602     0.029   13.9   0.5   2   2   0.00012      0.35   10.4   0.3    85   159   228   300   226   310 0.72 tRNA synthetase class II core domain (G, H, P, S and T)
tRNA-synt_1c         PF00749.16   314 sp|O83679|SYE_TREPA  -            537   2.5e-98  328.6   0.0   1   1    2e-102     3e-98  328.3   0.0     1   314     2   339     2   339 0.98 tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_2d         PF01409.15   247 sp|O83938|SYFA_TREPA -            553   1.2e-80  270.2   0.0   1   1   4.6e-84   1.7e-80  269.7   0.0     1   244   280   549   280   551 0.99 tRNA synthetases class II core domain (F)
tRNA-synt_2          PF00152.15   335 sp|O83938|SYFA_TREPA -            553   9.4e-05   21.3   0.0   1   2     2e-06    0.0076   15.0   0.0    94   121   414   440   407   451 0.94 tRNA synthetases class II (D, K and N)
DUF2582              PF10771.4     65 sp|O83938|SYFA_TREPA -            553    0.0041   16.9   0.0   2   3   0.00013      0.48   10.3   0.0    22    63   123   164   121   166 0.88 Protein of unknown function (DUF2582)
B5                   PF03484.10    70 sp|O83059|SYFB_TREPA -            604   1.3e-12   47.3   0.0   2   2   7.6e-16   5.6e-12   45.3   0.0     2    65   330   392   329   395 0.95 tRNA synthetase B5 domain
Prokineticin         PF06607.6     97 sp|O83059|SYFB_TREPA -            604     0.098   12.7   0.3   1   2   5.4e-05       0.4   10.8   0.1     8    48   255   295   248   322 0.82 Prokineticin
tRNA-synt_2b         PF00587.20   173 sp|O83678|SYG_TREPA  -            462   2.4e-45  154.2   0.0   1   1   4.7e-49   3.5e-45  153.6   0.0     1   170    37   253    37   255 0.95 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon       PF03129.15    94 sp|O83678|SYG_TREPA  -            462   2.3e-18   65.9   0.0   1   1   5.6e-22   4.1e-18   65.0   0.0     2    92   366   453   365   455 0.93 Anticodon binding domain
tRNA-synt_His        PF13393.1    311 sp|O83647|SYH_TREPA  -            442   5.7e-49  166.8   0.0   1   1   1.9e-52     7e-49  166.5   0.0     1   311    14   332    14   332 0.89 Histidyl-tRNA synthetase
tRNA-synt_2b         PF00587.20   173 sp|O83647|SYH_TREPA  -            442   2.5e-22   79.2   0.1   1   1   1.2e-25   4.4e-22   78.4   0.1     8   154    32   169    26   174 0.91 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon       PF03129.15    94 sp|O83647|SYH_TREPA  -            442    0.0066   16.3   0.0   1   1   3.3e-06     0.012   15.5   0.0     1    88   350   435   350   441 0.88 Anticodon binding domain
tRNA-synt_2          PF00152.15   335 sp|O83647|SYH_TREPA  -            442    0.0075   15.0   0.8   1   2   2.2e-05     0.082   11.6   0.2    95   127   105   136    24   161 0.66 tRNA synthetases class II (D, K and N)
tRNA-synt_1          PF00133.17   601 sp|O83466|SYI_TREPA  -           1091  1.1e-189  631.3   0.0   1   1  4.9e-193  1.8e-189  630.6   0.0     2   597    18   660    17   664 0.95 tRNA synthetases class I (I, L, M and V)
Anticodon_1          PF08264.8    153 sp|O83466|SYI_TREPA  -           1091   1.7e-30  105.7   0.2   1   1   7.9e-34   2.9e-30  105.0   0.2     1   151   724   872   724   874 0.92 Anticodon-binding domain of tRNA
tRNA-synt_1g         PF09334.6    391 sp|O83466|SYI_TREPA  -           1091   8.6e-19   67.4   0.0   1   3   1.1e-09     4e-06   25.7   0.0     8   134    48   193    46   204 0.78 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|O83466|SYI_TREPA  -           1091   8.6e-19   67.4   0.0   3   3     2e-10   7.6e-07   28.1   0.0   308   377   605   676   552   686 0.76 tRNA synthetases class I (M)
tRNA-synt_1e         PF01406.14   301 sp|O83466|SYI_TREPA  -           1091    0.0032   16.6   0.0   1   1   1.5e-06    0.0057   15.8   0.0   232   295   603   669   597   675 0.72 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1f         PF01921.13   360 sp|O83650|SYK_TREPA  -            528  6.2e-130  433.0   1.8   1   1    2e-133  7.5e-130  432.7   1.8     2   359     9   369     8   370 0.98 tRNA synthetases class I (K)
tRNA-synt_1e         PF01406.14   301 sp|O83650|SYK_TREPA  -            528   5.3e-10   38.8   0.0   1   2   2.6e-08   9.6e-05   21.6   0.1    10    58    25    75    17   126 0.89 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1e         PF01406.14   301 sp|O83650|SYK_TREPA  -            528   5.3e-10   38.8   0.0   2   2   3.3e-06     0.012   14.7   0.0   252   287   286   321   248   332 0.87 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1g         PF09334.6    391 sp|O83650|SYK_TREPA  -            528   7.3e-09   34.7   0.1   1   2   2.2e-06     0.008   14.8   0.0    11    48    37    74    30    77 0.94 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|O83650|SYK_TREPA  -            528   7.3e-09   34.7   0.1   2   2   3.1e-07    0.0012   17.6   0.0   319   361   277   321   219   339 0.77 tRNA synthetases class I (M)
tRNA-synt_1          PF00133.17   601 sp|O83650|SYK_TREPA  -            528    0.0012   16.9   0.0   1   2   1.1e-05      0.04   11.9   0.0     6    70    10    72     6    77 0.83 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1_2        PF13603.1    185 sp|O83595|SYL_TREPA  -            878   5.3e-60  201.8   0.0   1   1   3.6e-63   7.6e-60  201.3   0.0     1   185   222   423   222   423 0.89 Leucyl-tRNA synthetase, Domain 2
tRNA-synt_1          PF00133.17   601 sp|O83595|SYL_TREPA  -            878   1.6e-55  188.2   5.5   1   3   4.4e-44   9.2e-41  139.5   1.3     2   349    12   427    11   436 0.88 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1          PF00133.17   601 sp|O83595|SYL_TREPA  -            878   1.6e-55  188.2   5.5   2   3   3.3e-07   0.00071   17.7   0.1   414   439   436   461   429   593 0.92 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1          PF00133.17   601 sp|O83595|SYL_TREPA  -            878   1.6e-55  188.2   5.5   3   3   2.4e-08     5e-05   21.4   0.0   561   587   634   660   623   668 0.94 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g         PF09334.6    391 sp|O83595|SYL_TREPA  -            878   4.2e-24   84.9   0.0   1   2   7.9e-23   1.7e-19   69.7   0.0     7   160    42   186    36   231 0.83 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|O83595|SYL_TREPA  -            878   4.2e-24   84.9   0.0   2   2   2.9e-05     0.061   11.9   0.0   326   358   633   665   622   680 0.84 tRNA synthetases class I (M)
Anticodon_1          PF08264.8    153 sp|O83595|SYL_TREPA  -            878   4.3e-16   59.0   0.1   1   1   6.5e-19   1.4e-15   57.3   0.1     7   149   728   841   724   846 0.84 Anticodon-binding domain of tRNA
DZR                  PF12773.2     50 sp|O83595|SYL_TREPA  -            878       0.9    9.4  10.6   1   3    0.0002      0.43   10.4   2.2    13    40   159   186   152   190 0.83 Double zinc ribbon
tRNA-synt_1g         PF09334.6    391 sp|O83776|SYM_TREPA  -            811  9.2e-155  515.1   0.0   1   1  4.7e-158  1.2e-154  514.7   0.0     2   391     5   409     4   409 0.98 tRNA synthetases class I (M)
tRNA_bind            PF01588.15    95 sp|O83776|SYM_TREPA  -            811   5.6e-22   77.3   0.0   1   1   4.4e-25   1.1e-21   76.4   0.0     1    82   654   736   654   749 0.88 Putative tRNA binding domain
tRNA-synt_1          PF00133.17   601 sp|O83776|SYM_TREPA  -            811   2.9e-06   25.6   0.0   1   3   2.1e-08   5.1e-05   21.4   0.0    30    79     9    58     4   136 0.94 tRNA synthetases class I (I, L, M and V)
Anticodon_1          PF08264.8    153 sp|O83776|SYM_TREPA  -            811   1.7e-05   24.6   0.0   1   1   1.3e-08   3.3e-05   23.6   0.0     8    92   444   527   439   556 0.84 Anticodon-binding domain of tRNA
DZR                  PF12773.2     50 sp|O83776|SYM_TREPA  -            811    0.0011   18.7   4.5   3   3   4.5e-07    0.0011   18.7   4.5     1    38   142   178   142   185 0.92 Double zinc ribbon
tRNA-synt_2          PF00152.15   335 sp|O83618|SYN_TREPA  -            523   2.7e-64  217.0   0.0   1   1   2.5e-67   9.2e-64  215.3   0.0     3   334   142   518   140   519 0.84 tRNA synthetases class II (D, K and N)
tRNA_anti-codon      PF01336.20    75 sp|O83618|SYN_TREPA  -            523   2.2e-08   33.8   0.0   1   1   1.4e-11   5.2e-08   32.6   0.0     3    75    23   124    22   124 0.97 OB-fold nucleic acid binding domain
tRNA-synt_2b         PF00587.20   173 sp|O83618|SYN_TREPA  -            523      0.01   15.3   0.0   2   2   0.00018      0.68    9.5   0.0    85   143   256   318   246   335 0.73 tRNA synthetase class II core domain (G, H, P, S and T)
tRNA-synt_2b         PF00587.20   173 sp|O83195|SYP_TREPA  -            617   1.2e-35  122.5   0.0   1   1   7.9e-39   2.4e-35  121.6   0.0     2   168    48   212    47   216 0.96 tRNA synthetase class II core domain (G, H, P, S and T)
tRNA_edit            PF04073.10   123 sp|O83195|SYP_TREPA  -            617   4.6e-21   74.9   0.1   1   1     1e-22   3.1e-19   69.0   0.1     1    85   268   362   268   421 0.82 Aminoacyl-tRNA editing domain
HGTP_anticodon       PF03129.15    94 sp|O83195|SYP_TREPA  -            617   1.2e-13   50.7   0.0   1   1   7.2e-17   2.1e-13   49.9   0.0     2    92   518   605   517   607 0.92 Anticodon binding domain
tRNA-synt_2          PF00152.15   335 sp|O83195|SYP_TREPA  -            617     0.082   11.6   0.1   1   2   0.00024      0.72    8.5   0.0    22   141    45   177    43   286 0.73 tRNA synthetases class II (D, K and N)
tRNA-synt_1d         PF00750.14   354 sp|O83803|SYR_TREPA  -            589   9.3e-55  185.8   0.0   1   1     4e-58   1.2e-54  185.5   0.0     2   352   104   451   103   452 0.89 tRNA synthetases class I (R)
DALR_1               PF05746.10   119 sp|O83803|SYR_TREPA  -            589   6.8e-32  109.9   0.0   1   1   4.3e-35   1.3e-31  109.0   0.0     1   119   467   589   467   589 0.97 DALR anticodon binding domain
Arg_tRNA_synt_N      PF03485.11    85 sp|O83803|SYR_TREPA  -            589   4.7e-13   49.4   0.0   1   1   4.2e-16   1.2e-12   48.1   0.0     3    85     8    94     6    94 0.91 Arginyl tRNA synthetase N terminal domain
Jiv90                PF14901.1     95 sp|O83803|SYR_TREPA  -            589     0.075   13.0   0.0   1   1   6.2e-05      0.18   11.7   0.0    23    70   278   325   267   336 0.85 Cleavage inducing molecular chaperone
tRNA-synt_2b         PF00587.20   173 sp|O83653|SYS_TREPA  -            426     2e-28   99.0   0.0   1   1   4.1e-32     3e-28   98.5   0.0     1   171   171   340   171   342 0.96 tRNA synthetase class II core domain (G, H, P, S and T)
Seryl_tRNA_N         PF02403.17   108 sp|O83653|SYS_TREPA  -            426   1.1e-21   76.8   2.1   1   1   2.2e-25   1.6e-21   76.2   2.1     1   107     1   105     1   106 0.98 Seryl-tRNA synthetase N-terminal domain
tRNA-synt_2b         PF00587.20   173 sp|O83809|SYT_TREPA  -            592   7.5e-46  155.8   0.1   1   1   2.3e-49   1.1e-45  155.2   0.1     4   166   226   388   223   393 0.95 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon       PF03129.15    94 sp|O83809|SYT_TREPA  -            592   2.1e-18   66.0   0.0   1   1   9.4e-22   4.6e-18   64.9   0.0     1    92   495   582   495   584 0.95 Anticodon binding domain
tRNA_SAD             PF07973.9     44 sp|O83809|SYT_TREPA  -            592   3.6e-11   42.7   0.0   1   1   1.4e-14   6.8e-11   41.8   0.0     2    44   119   169   118   169 0.96 Threonyl and Alanyl tRNA synthetase second additional domain
tRNA-synt_1          PF00133.17   601 sp|O83998|SYV_TREPA  -            956  2.6e-188  626.8   0.1   1   1    3e-190  4.1e-187  622.8   0.1    15   598    52   603    44   606 0.94 tRNA synthetases class I (I, L, M and V)
Anticodon_1          PF08264.8    153 sp|O83998|SYV_TREPA  -            956   1.7e-39  135.0   0.0   1   1   2.1e-42   2.9e-39  134.2   0.0     1   151   648   806   648   808 0.88 Anticodon-binding domain of tRNA
tRNA-synt_1g         PF09334.6    391 sp|O83998|SYV_TREPA  -            956   5.6e-24   84.5   4.4   1   4   5.1e-13   6.9e-10   38.1   0.0     2   135    63   214    62   223 0.72 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|O83998|SYV_TREPA  -            956   5.6e-24   84.5   4.4   2   4   3.5e-06    0.0047   15.6   1.1   180   238   398   456   382   468 0.78 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|O83998|SYV_TREPA  -            956   5.6e-24   84.5   4.4   4   4   3.2e-10   4.3e-07   28.9   0.0   307   372   545   611   509   627 0.76 tRNA synthetases class I (M)
Val_tRNA-synt_C      PF10458.4     66 sp|O83998|SYV_TREPA  -            956   3.4e-12   46.2   0.3   1   1   5.6e-15   7.6e-12   45.1   0.3     6    65   886   945   881   946 0.91 Valyl tRNA synthetase tRNA binding arm
tRNA-synt_1_2        PF13603.1    185 sp|O83998|SYV_TREPA  -            956   1.7e-07   30.7   0.3   2   2   7.1e-10   9.5e-07   28.2   0.0    86   146   284   344   277   363 0.89 Leucyl-tRNA synthetase, Domain 2
tRNA-synt_1e         PF01406.14   301 sp|O83998|SYV_TREPA  -            956    0.0031   16.7   2.4   2   2   6.6e-05     0.089   11.9   0.0   237   281   550   594   539   603 0.85 tRNA synthetases class I (C) catalytic domain
HypA                 PF01155.14   113 sp|O83998|SYV_TREPA  -            956      0.17   11.5   2.6   1   1   0.00039      0.53    9.9   0.8    70    98   457   485   443   490 0.87 Hydrogenase expression/synthesis hypA family
tRNA-synt_1b         PF00579.20   292 sp|O83640|SYW_TREPA  -            337     2e-79  266.7   0.0   1   1   1.7e-83   2.5e-79  266.4   0.0     6   292     2   284     1   284 0.98 tRNA synthetases class I (W and Y)
tRNA-synt_1b         PF00579.20   292 sp|O83806|SYY_TREPA  -            409   2.8e-82  276.1   0.0   1   1   6.8e-86   3.4e-82  275.8   0.0     3   291    29   316    27   317 0.96 tRNA synthetases class I (W and Y)
S4                   PF01479.20    48 sp|O83806|SYY_TREPA  -            409     0.024   14.0   0.0   1   1   1.5e-05     0.073   12.5   0.0     8    27   346   365   343   377 0.83 S4 domain
Acetyltransf_6       PF13480.1    142 sp|O83806|SYY_TREPA  -            409     0.099   12.5   1.6   1   2   0.00018      0.88    9.5   0.0    98   136    34    72    25    77 0.89 Acetyltransferase (GNAT) domain
Iron_transport       PF10634.4    151 sp|P19478|TA34_TREPA -            204   2.8e-57  192.8   0.1   1   1   2.2e-61   3.3e-57  192.6   0.1     1   151    45   201    45   201 0.98 Fe2+ transport protein
ThiI                 PF02568.9    197 sp|O83570|THII_TREPA -            401   6.3e-81  270.5   0.0   1   1   2.2e-84   8.2e-81  270.1   0.0     2   196   179   373   178   374 0.98 Thiamine biosynthesis protein (ThiI)
THUMP                PF02926.12   144 sp|O83570|THII_TREPA -            401   2.4e-24   85.8   0.0   1   1   1.2e-27   4.4e-24   84.9   0.0    24   141    51   165    32   168 0.92 THUMP domain
QueC                 PF06508.8    210 sp|O83570|THII_TREPA -            401   8.1e-05   22.0   0.0   1   1   8.4e-07    0.0031   16.8   0.0     3   175   184   336   182   355 0.74 Queuosine biosynthesis protein QueC
RBD                  PF02196.10    71 sp|O83570|THII_TREPA -            401     0.066   12.9   0.0   1   1   4.5e-05      0.17   11.6   0.0    27    61   229   263   224   265 0.91 Raf-like Ras-binding domain
Thioredoxin          PF00085.15   104 sp|O83889|THIO_TREPA -            105   5.4e-26   90.2   0.0   1   1   4.4e-29     6e-26   90.1   0.0    11   103    12   103     3   104 0.93 Thioredoxin
Thioredoxin_2        PF13098.1    112 sp|O83889|THIO_TREPA -            105   3.3e-11   43.3   0.0   1   1   9.6e-14   1.3e-10   41.4   0.0     7   111    20   100    15   101 0.92 Thioredoxin-like domain
Thioredoxin_8        PF13905.1     95 sp|O83889|THIO_TREPA -            105   1.2e-07   31.6   0.0   1   2   1.6e-07   0.00022   21.2   0.0     2    44    19    59    18    63 0.81 Thioredoxin-like
Thioredoxin_8        PF13905.1     95 sp|O83889|THIO_TREPA -            105   1.2e-07   31.6   0.0   2   2   0.00058      0.79    9.8   0.0    68    93    58    83    53    85 0.82 Thioredoxin-like
Thioredoxin_9        PF14595.1    129 sp|O83889|THIO_TREPA -            105   0.00057   19.4   0.0   1   1   5.2e-07    0.0007   19.1   0.0    48   108    25    83     7    96 0.81 Thioredoxin
Thioredoxin_5        PF13743.1    176 sp|O83889|THIO_TREPA -            105    0.0057   16.2   0.1   2   2     2e-05     0.027   14.0   0.0   134   158    59    83    51    99 0.82 Thioredoxin
Thioredoxin_7        PF13899.1     82 sp|O83889|THIO_TREPA -            105    0.0059   16.6   0.0   1   1   5.8e-06    0.0078   16.2   0.0    15    80    16    79     5    81 0.78 Thioredoxin-like
DIM1                 PF02966.11   133 sp|O83889|THIO_TREPA -            105    0.0059   16.1   0.0   1   1   4.9e-06    0.0066   15.9   0.0    18   105    16   103     5   105 0.92 Mitosis protein DIM1
DUF836               PF05768.9     81 sp|O83889|THIO_TREPA -            105    0.0069   16.6   0.0   1   1   6.1e-06    0.0082   16.3   0.0     8    55    28    78    22   102 0.79 Glutaredoxin-like domain (DUF836)
Thioredoxin_3        PF13192.1     76 sp|O83889|THIO_TREPA -            105    0.0092   15.7   0.0   1   1   7.9e-06     0.011   15.5   0.0     8    58    28    83    21   102 0.80 Thioredoxin domain
HyaE                 PF07449.6    107 sp|O83889|THIO_TREPA -            105      0.01   15.7   0.0   1   1     1e-05     0.014   15.2   0.0    49    95    39    85    35    96 0.82 Hydrogenase-1 expression protein HyaE
Thioredoxin_4        PF13462.1    163 sp|O83889|THIO_TREPA -            105     0.014   15.4   0.0   2   2   0.00072      0.97    9.4   0.0   123   159    58    96    54   102 0.86 Thioredoxin
Thy1                 PF02511.10   190 sp|O83971|THYX_TREPA -            305   2.6e-59  199.7   3.2   1   1   2.2e-63   3.3e-59  199.4   3.2     1   188    52   252    52   254 0.94 Thymidylate synthase complementing protein
Trigger_C            PF05698.9    162 sp|O83519|TIG_TREPA  -            442   1.7e-37  128.7   1.6   2   2   3.5e-41   1.7e-37  128.7   1.6     1   161   266   419   266   420 0.96 Bacterial trigger factor protein (TF) C-terminus
Trigger_N            PF05697.8    145 sp|O83519|TIG_TREPA  -            442   6.3e-34  116.8   1.5   1   2   3.2e-37   1.6e-33  115.5   0.1     2   145     4   152     3   152 0.92 Bacterial trigger factor protein (TF)
Halogen_Hydrol       PF10112.4    199 sp|O83519|TIG_TREPA  -            442     0.079   12.3   0.8   2   2   0.00013      0.64    9.4   0.3   152   188   250   286   247   290 0.89 5-bromo-4-chloroindolyl phosphate hydrolysis protein
ATP_bind_3           PF01171.15   182 sp|O83388|TILS_TREPA -            477   4.5e-55  185.9   0.0   1   1   8.4e-59   6.2e-55  185.5   0.0     2   182    31   216    30   216 0.98 PP-loop family
TilS_C               PF11734.3     74 sp|O83388|TILS_TREPA -            477   0.00047   19.3   0.0   1   1   1.3e-07     0.001   18.2   0.0     3    53   412   460   410   474 0.89 TilS substrate C-terminal domain
Transketolase_N      PF00456.16   333 sp|O83571|TKT_TREPA  -            661  3.8e-128  427.0   0.0   1   1  2.2e-131  5.4e-128  426.4   0.0     4   325     8   328     5   332 0.98 Transketolase, thiamine diphosphate binding domain
Transket_pyr         PF02779.19   178 sp|O83571|TKT_TREPA  -            661   1.8e-44  151.3   0.0   1   1   1.3e-47   3.3e-44  150.4   0.0     2   176   354   525   353   526 0.97 Transketolase, pyrimidine binding domain
DXP_synthase_N       PF13292.1    270 sp|O83571|TKT_TREPA  -            661   4.1e-06   25.9   0.1   1   1   7.2e-09   1.8e-05   23.8   0.1    14   178     2   194     1   226 0.79 1-deoxy-D-xylulose-5-phosphate synthase
Transketolase_C      PF02780.15   124 sp|O83571|TKT_TREPA  -            661      0.01   15.7   0.5   1   1   1.2e-05     0.029   14.3   0.1     9    63   552   598   543   621 0.66 Transketolase, C-terminal domain
TPP_enzyme_C         PF02775.16   153 sp|O83571|TKT_TREPA  -            661     0.012   15.2   0.3   1   2   0.00013      0.33   10.5   0.3    24   151   112   241   100   243 0.68 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
TPP_enzyme_N         PF02776.13   172 sp|O83571|TKT_TREPA  -            661     0.076   12.4   0.1   1   1   7.7e-05      0.19   11.1   0.1    86   161   449   521   443   526 0.72 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
Bmp                  PF02608.9    306 sp|P29724|TMPC_TREPA -            353  1.6e-101  339.1   5.2   1   1  2.4e-105  1.8e-101  338.9   5.2     2   305    41   347    40   348 0.99 Basic membrane protein
ABC_sub_bind         PF04392.7    294 sp|P29724|TMPC_TREPA -            353     0.035   13.0   0.0   2   2   7.1e-05      0.53    9.1   0.0    17    78   182   242   167   246 0.90 ABC transporter substrate binding protein
Topoisom_bac         PF01131.15   403 sp|O83409|TOP1_TREPA -            731  1.3e-120  402.9   1.5   2   2    3e-123  7.5e-120  400.4   0.5     3   402   144   558   142   559 0.91 DNA topoisomerase
zf-C4_Topoisom       PF01396.14    39 sp|O83409|TOP1_TREPA -            731   3.4e-23   80.8  25.8   1   3   4.6e-14   1.1e-10   40.7   2.6     2    37   589   624   588   626 0.93 Topoisomerase DNA binding C4 zinc finger
zf-C4_Topoisom       PF01396.14    39 sp|O83409|TOP1_TREPA -            731   3.4e-23   80.8  25.8   2   3   6.9e-11   1.7e-07   30.6   3.6     5    38   631   665   625   666 0.87 Topoisomerase DNA binding C4 zinc finger
zf-C4_Topoisom       PF01396.14    39 sp|O83409|TOP1_TREPA -            731   3.4e-23   80.8  25.8   3   3   4.5e-08   0.00011   21.5   3.9     4    38   670   704   668   705 0.90 Topoisomerase DNA binding C4 zinc finger
Toprim               PF01751.17   100 sp|O83409|TOP1_TREPA -            731   5.4e-21   74.4   0.0   1   1   5.6e-24   1.4e-20   73.1   0.0     2   100    19   128    18   128 0.97 Toprim domain
Toprim_4             PF13662.1     81 sp|O83409|TOP1_TREPA -            731   0.00095   19.1   0.0   1   1   1.4e-06    0.0036   17.2   0.0     1    71    17   113    17   124 0.81 Toprim domain
DUF2996              PF11210.3    119 sp|O83409|TOP1_TREPA -            731     0.065   13.5   0.0   1   1   8.4e-05      0.21   11.8   0.0    19    88   173   243   154   257 0.72 Protein of unknown function (DUF2996)
Romo1                PF10247.4     67 sp|O83409|TOP1_TREPA -            731     0.065   13.4   0.1   1   1   6.4e-05      0.16   12.1   0.1    40    63   590   613   581   617 0.86 Reactive mitochondrial oxygen species modulator 1
Ferritin             PF00210.19   142 sp|P16665|TPF1_TREPA -            177   4.9e-18   65.2   0.3   1   1   3.9e-22   5.8e-18   65.0   0.3     2   136    37   175    36   177 0.94 Ferritin-like domain
TIM                  PF00121.13   244 sp|O83548|TPIS_TREPA -            249   2.9e-89  298.3   0.1   1   1   2.2e-93   3.3e-89  298.1   0.1     2   243     5   245     4   246 0.99 Triosephosphate isomerase
Lipoprotein_9        PF03180.9    237 sp|O07950|TPN32_TREPA -            268   6.8e-85  283.7   0.0   1   1     1e-88   7.8e-85  283.5   0.0     2   234    33   264    32   268 0.97 NLPA lipoprotein
NMT1                 PF09084.6    216 sp|O07950|TPN32_TREPA -            268     0.089   12.3   0.0   1   1   1.8e-05      0.13   11.8   0.0    17   117    53   152    52   246 0.87 NMT1/THI5 like
Bmp                  PF02608.9    306 sp|Q56328|TPN38_TREPA -            343   2.5e-86  289.2   0.0   1   1   1.9e-90   2.8e-86  289.0   0.0     2   304    30   337    29   339 0.98 Basic membrane protein
OmpA                 PF00691.15    97 sp|P38369|TPN50_TREPA -            417   1.3e-17   63.9   0.2   1   1   4.9e-21   2.4e-17   63.0   0.2     2    97   313   408   312   408 0.93 OmpA family
DUF218               PF02698.12   155 sp|P38369|TPN50_TREPA -            417    0.0027   17.2   0.1   1   1   1.2e-06    0.0059   16.1   0.1    17    73   319   384   314   389 0.85 DUF218 domain
Methyltransf_4       PF02390.12   197 sp|O83477|TRMB_TREPA -            250   2.5e-61  206.1   0.0   1   1   1.5e-64   3.1e-61  205.8   0.0     5   196    40   249    34   250 0.93 Putative methyltransferase
Methyltransf_18      PF12847.2    112 sp|O83477|TRMB_TREPA -            250   0.00014   22.3   0.0   1   1   1.4e-07   0.00029   21.4   0.0     5   108    84   193    80   197 0.73 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|O83477|TRMB_TREPA -            250   0.00058   19.6   0.0   1   2   0.00011      0.22   11.2   0.0     9    60    67   127    61   176 0.78 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|O83477|TRMB_TREPA -            250     0.001   19.5   0.0   1   2   2.6e-06    0.0056   17.1   0.0     1    59    85   143    85   150 0.91 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|O83477|TRMB_TREPA -            250    0.0011   19.0   0.1   1   1   9.8e-07    0.0021   18.0   0.1     3   115    83   196    81   198 0.75 Methyltransferase domain
MTS                  PF05175.9    170 sp|O83477|TRMB_TREPA -            250     0.054   12.8   0.0   1   1   6.5e-05      0.14   11.5   0.0    35    94    84   143    73   148 0.92 Methyltransferase small domain
tRNA_m1G_MT          PF01746.16   186 sp|O83878|TRMD_TREPA -            250   2.1e-49  167.6   0.0   1   1   1.8e-53   2.7e-49  167.3   0.0     2   186    23   217    22   217 0.96 tRNA (Guanine-1)-methyltransferase
TroA                 PF01297.12   256 sp|P96116|TROA_TREPA -            308   1.3e-63  214.6   0.0   1   1   9.7e-68   1.4e-63  214.5   0.0     1   256    36   306    36   306 0.91 Periplasmic solute binding protein family
ABC_tran             PF00005.22   137 sp|P96117|TROB_TREPA -            266   1.9e-28   99.4   0.0   1   1   5.2e-31   2.9e-28   98.8   0.0     3   136    28   171    26   172 0.94 ABC transporter
AAA_21               PF13304.1    303 sp|P96117|TROB_TREPA -            266   1.7e-10   41.3   0.0   1   2   4.5e-09   2.5e-06   27.6   0.0     3    24    40    61    40    95 0.82 AAA domain
AAA_21               PF13304.1    303 sp|P96117|TROB_TREPA -            266   1.7e-10   41.3   0.0   2   2    0.0003      0.16   11.8   0.0   232   292   139   196   114   203 0.88 AAA domain
SMC_N                PF02463.14   220 sp|P96117|TROB_TREPA -            266   2.2e-07   30.3   0.1   1   2   2.3e-06    0.0013   18.0   0.0    26    48    38    60    28    70 0.82 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|P96117|TROB_TREPA -            266   2.2e-07   30.3   0.1   2   2   0.00049      0.27   10.4   0.0   135   203   142   207   118   220 0.80 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P96117|TROB_TREPA -            266   8.2e-06   25.2   0.0   1   1   4.6e-08   2.5e-05   23.7   0.0    22    47    35    60    26    70 0.80 P-loop containing region of AAA domain
AAA_23               PF13476.1    202 sp|P96117|TROB_TREPA -            266   2.3e-05   24.8   0.0   1   1   7.3e-08     4e-05   24.0   0.0    23    43    40    60    28    79 0.90 AAA domain
AAA_16               PF13191.1    185 sp|P96117|TROB_TREPA -            266   4.5e-05   23.5   0.4   1   1   9.6e-07   0.00053   20.0   0.4    28   162    40   206    26   219 0.72 AAA ATPase domain
AAA_25               PF13481.1    194 sp|P96117|TROB_TREPA -            266   0.00011   21.7   0.0   1   2   1.2e-06   0.00068   19.0   0.0    18    77    21    84     5    86 0.80 AAA domain
SbcCD_C              PF13558.1     90 sp|P96117|TROB_TREPA -            266    0.0012   18.6   0.3   1   1   2.8e-05     0.015   15.1   0.3    25    89   136   187   120   188 0.76 Putative exonuclease SbcCD, C subunit
Arch_ATPase          PF01637.13   234 sp|P96117|TROB_TREPA -            266    0.0021   17.7   0.0   1   2   0.00016     0.086   12.5   0.0    22    62    38    79    33    92 0.86 Archaeal ATPase
AAA_10               PF12846.2    304 sp|P96117|TROB_TREPA -            266    0.0026   17.2   0.1   1   1     6e-06    0.0033   16.9   0.1     5    35    40    70    38   213 0.91 AAA-like domain
ABC_ATPase           PF09818.4    448 sp|P96117|TROB_TREPA -            266    0.0048   15.5   0.1   1   1   1.5e-05    0.0085   14.7   0.1   242   264    33    56    29    60 0.92 Predicted ATPase of the ABC class
DUF258               PF03193.11   161 sp|P96117|TROB_TREPA -            266    0.0058   15.8   0.0   1   1   1.7e-05    0.0094   15.1   0.0    35    67    35    68     2    80 0.80 Protein of unknown function, DUF258
AAA_15               PF13175.1    415 sp|P96117|TROB_TREPA -            266    0.0095   15.0   0.0   1   1   3.4e-05     0.019   14.0   0.0    24    42    38    56    22    82 0.83 AAA ATPase domain
AAA_17               PF13207.1    121 sp|P96117|TROB_TREPA -            266    0.0099   16.6   0.1   1   1   3.7e-05      0.02   15.6   0.1     3    23    40    60    40   232 0.80 AAA domain
AAA_19               PF13245.1     76 sp|P96117|TROB_TREPA -            266      0.02   14.6   0.9   1   2   0.00081      0.44   10.3   0.0    15    54    41    89    33    95 0.80 Part of AAA domain
NACHT                PF05729.7    166 sp|P96117|TROB_TREPA -            266     0.029   14.0   0.0   1   1   0.00022      0.12   11.9   0.0     4    23    40    59    38    79 0.89 NACHT domain
MMR_HSR1             PF01926.18   116 sp|P96117|TROB_TREPA -            266      0.04   13.8   0.1   1   1   0.00012     0.067   13.1   0.1     3    21    40    58    39   202 0.75 50S ribosome-binding GTPase
AAA_22               PF13401.1    131 sp|P96117|TROB_TREPA -            266     0.041   14.0   0.0   1   1   0.00037       0.2   11.7   0.0     8    28    40    60    35    89 0.84 AAA domain
MobB                 PF03205.9    140 sp|P96117|TROB_TREPA -            266      0.05   13.3   0.1   1   2    0.0011       0.6    9.8   0.0     4    21    40    57    37    68 0.88 Molybdopterin guanine dinucleotide synthesis protein B
ATP_bind_1           PF03029.12   238 sp|P96117|TROB_TREPA -            266     0.063   12.8   0.1   1   2    0.0016       0.9    9.0   0.0     1    23    41    63    41    70 0.84 Conserved hypothetical ATP binding protein
MutS_V               PF00488.16   235 sp|P96117|TROB_TREPA -            266      0.07   12.5   0.0   1   1   0.00034      0.19   11.1   0.0    29    64    22    57     8    65 0.81 MutS domain V
AAA_30               PF13604.1    196 sp|P96117|TROB_TREPA -            266     0.075   12.6   0.0   1   1   0.00043      0.23   10.9   0.0    20    48    38    66    31    77 0.79 AAA domain
AAA_33               PF13671.1    143 sp|P96117|TROB_TREPA -            266     0.088   12.6   0.0   1   1   0.00039      0.22   11.4   0.0     4    23    41    60    39    92 0.86 AAA domain
Mg_chelatase         PF01078.16   207 sp|P96117|TROB_TREPA -            266       0.1   11.7   0.2   1   1   0.00043      0.24   10.5   0.2    27    49    41    63    38    69 0.89 Magnesium chelatase, subunit ChlI
Adeno_IVa2           PF02456.10   370 sp|P96117|TROB_TREPA -            266      0.14   10.7   0.0   1   1   0.00041      0.22   10.1   0.0    87   109    36    58    30    68 0.90 Adenovirus IVa2 protein
Dynamin_N            PF00350.18   168 sp|P96117|TROB_TREPA -            266      0.19   11.5   0.1   1   1   0.00051      0.28   10.9   0.1     2    27    40    65    40   151 0.88 Dynamin family
ABC-3                PF00950.12   258 sp|P96118|TROC_TREPA -            298   1.4e-80  270.3  29.0   1   1   3.1e-84   1.5e-80  270.1  29.0     2   257    10   275     9   276 0.98 ABC 3 transport family
FecCD                PF01032.13   311 sp|P96118|TROC_TREPA -            298   1.1e-07   31.0  29.6   1   1   3.2e-11   1.6e-07   30.5  29.6    80   297    47   264    40   276 0.86 FecCD transport family
ABC-3                PF00950.12   258 sp|P96119|TROD_TREPA -            367   6.4e-47  160.0  36.7   1   1   9.6e-51   1.4e-46  158.8  36.7     6   255     3   269     1   272 0.88 ABC 3 transport family
PseudoU_synth_1      PF01416.15   105 sp|O83802|TRUA_TREPA -            280   5.9e-25   87.7   0.1   1   2   6.2e-17   9.2e-13   48.5   0.0     2   104    10   112     9   113 0.94 tRNA pseudouridine synthase
PseudoU_synth_1      PF01416.15   105 sp|O83802|TRUA_TREPA -            280   5.9e-25   87.7   0.1   2   2   1.8e-13   2.7e-09   37.4   0.0     3    87   154   239   152   249 0.91 tRNA pseudouridine synthase
TruB_N               PF01509.13   149 sp|O83859|TRUB_TREPA -            366   2.8e-39  134.6   0.0   1   1   3.8e-42   2.8e-38  131.4   0.0     1   148    29   198    29   199 0.90 TruB family pseudouridylate synthase (N terminal domain)
Pyr_redox_2          PF07992.9    201 sp|O83790|TRXB_TREPA -            307   2.7e-32  112.2   0.6   1   1   4.1e-35   3.4e-32  111.9   0.6     1   198     6   278     6   280 0.91 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox            PF00070.22    80 sp|O83790|TRXB_TREPA -            307   7.1e-18   64.7   3.8   1   2   0.00038      0.31   11.4   0.2     2    31     7    36     6    44 0.91 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox            PF00070.22    80 sp|O83790|TRXB_TREPA -            307   7.1e-18   64.7   3.8   2   2   2.5e-17   2.1e-14   53.6   0.2     1    79   146   219   146   223 0.94 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|O83790|TRXB_TREPA -            307   7.7e-18   65.2   0.1   1   3   3.6e-05     0.029   14.4   0.1     1    36     8    41     8    47 0.84 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|O83790|TRXB_TREPA -            307   7.7e-18   65.2   0.1   2   3   1.2e-14   9.9e-12   45.3   0.0    63   201    42   178    35   180 0.89 Pyridine nucleotide-disulphide oxidoreductase
DAO                  PF01266.19   358 sp|O83790|TRXB_TREPA -            307   1.5e-10   40.5   5.1   1   3     7e-08   5.8e-05   22.1   0.9     1    34     6    39     6    42 0.91 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|O83790|TRXB_TREPA -            307   1.5e-10   40.5   5.1   2   3   1.2e-06   0.00096   18.1   0.0   148   205    62   117    53   133 0.92 FAD dependent oxidoreductase
FAD_binding_2        PF00890.19   417 sp|O83790|TRXB_TREPA -            307   1.6e-08   33.8   3.6   1   4   1.3e-08   1.1e-05   24.5   1.5     1    36     6    40     6    47 0.91 FAD binding domain
HI0933_like          PF03486.9    409 sp|O83790|TRXB_TREPA -            307   1.9e-08   33.2   3.4   1   3   8.6e-09   7.1e-06   24.7   0.3     1    41     5    45     5    46 0.92 HI0933-like protein
GIDA                 PF01134.17   392 sp|O83790|TRXB_TREPA -            307   5.8e-08   32.0   5.1   1   4   8.2e-07   0.00068   18.6   0.5     1    31     6    36     6    50 0.87 Glucose inhibited division protein A
Thi4                 PF01946.12   230 sp|O83790|TRXB_TREPA -            307   1.8e-07   30.4   0.1   1   1     8e-10   6.6e-07   28.6   0.1    17    54     4    40     2    45 0.88 Thi4 family
NAD_binding_8        PF13450.1     68 sp|O83790|TRXB_TREPA -            307   3.9e-06   26.7   0.1   1   1   1.2e-08     1e-05   25.4   0.1     1    34     9    41     9    68 0.86 NAD(P)-binding Rossmann-like domain
NAD_binding_7        PF13241.1    103 sp|O83790|TRXB_TREPA -            307     1e-05   25.7   0.5   2   2     1e-05    0.0085   16.3   0.1     5    78   142   298   141   304 0.60 Putative NAD(P)-binding
K_oxygenase          PF13434.1    341 sp|O83790|TRXB_TREPA -            307   1.1e-05   24.5   0.3   2   3   0.00013       0.1   11.4   0.0   107   228    66   180    61   184 0.67 L-lysine 6-monooxygenase (NADPH-requiring)
FAD_binding_3        PF01494.14   356 sp|O83790|TRXB_TREPA -            307   1.5e-05   24.1   2.7   1   3   1.5e-06    0.0013   17.9   0.1     2    34     5    37     4    43 0.92 FAD binding domain
FAD_oxidored         PF12831.2    428 sp|O83790|TRXB_TREPA -            307   0.00014   21.1   2.0   1   3   1.6e-07   0.00014   21.1   2.0     1    35     6    40     6    43 0.93 FAD dependent oxidoreductase
Lycopene_cycl        PF05834.7    374 sp|O83790|TRXB_TREPA -            307   0.00035   19.6   2.7   1   3   2.4e-05      0.02   13.8   0.3     1    33     6    36     6    41 0.89 Lycopene cyclase protein
Shikimate_DH         PF01488.15   135 sp|O83790|TRXB_TREPA -            307    0.0008   19.5   0.1   2   2   0.00077      0.63   10.1   0.0    10    62   142   196   135   217 0.78 Shikimate / quinate 5-dehydrogenase
FMO-like             PF00743.14   532 sp|O83790|TRXB_TREPA -            307     0.018   13.2   0.1   2   2   7.2e-05     0.059   11.5   0.0   159   216   120   177    99   212 0.86 Flavin-binding monooxygenase-like
Peptidase_M22        PF00814.20   268 sp|O83686|TSAD_TREPA -            352   1.3e-88  296.9   0.3   1   1     1e-92   1.5e-88  296.7   0.3     2   267    24   306    23   307 0.96 Glycoprotease family
UPF0079              PF02367.12   123 sp|O83845|TSAE_TREPA -            135   1.7e-42  143.9   0.0   1   1   3.8e-46   1.9e-42  143.7   0.0     1   123    11   132    11   132 0.98 Uncharacterised P-loop hydrolase UPF0079
AAA_25               PF13481.1    194 sp|O83845|TSAE_TREPA -            135     0.011   15.1   0.1   1   1   2.6e-06     0.013   14.9   0.1    20    57    12    49     2    76 0.83 AAA domain
Tuberin              PF03542.11   356 sp|O83845|TSAE_TREPA -            135      0.11   11.5   0.0   1   1   2.8e-05      0.14   11.2   0.0   218   282    57   121    48   128 0.82 Tuberin
PNP_UDP_1            PF01048.15   234 sp|O83990|UDP_TREPA  -            258   8.4e-35  119.8   1.5   1   1   6.6e-39   9.7e-35  119.6   1.5     2   229    23   244    22   252 0.84 Phosphorylase superfamily
UPRTase              PF14681.1    207 sp|O83462|UPP_TREPA  -            360   1.6e-21   76.4   0.0   1   1   6.7e-25     5e-21   74.8   0.0     4   204    94   318    91   320 0.75 Uracil phosphoribosyltransferase
Pribosyltran         PF00156.22   125 sp|O83462|UPP_TREPA  -            360   0.00085   19.0   0.0   1   1   2.6e-07    0.0019   17.9   0.0    23   123   163   270   153   274 0.70 Phosphoribosyl transferase domain
ABC_tran             PF00005.22   137 sp|O83527|UVRA_TREPA -            960   1.8e-19   70.3   0.0   1   3   7.5e-05     0.043   14.1   0.0     1    28    18    45    18   146 0.92 ABC transporter
ABC_tran             PF00005.22   137 sp|O83527|UVRA_TREPA -            960   1.8e-19   70.3   0.0   2   3   2.6e-05     0.015   15.6   0.0    78   136   475   534   425   535 0.61 ABC transporter
ABC_tran             PF00005.22   137 sp|O83527|UVRA_TREPA -            960   1.8e-19   70.3   0.0   3   3   6.8e-11   3.9e-08   33.6   0.0     1   136   640   876   640   877 0.75 ABC transporter
SMC_N                PF02463.14   220 sp|O83527|UVRA_TREPA -            960   4.7e-10   39.0   0.0   2   4    0.0015      0.84    8.8   0.0   135   209   288   576   130   582 0.67 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|O83527|UVRA_TREPA -            960   4.7e-10   39.0   0.0   4   4   0.00022      0.13   11.5   0.0   136   209   845   918   714   926 0.79 RecF/RecN/SMC N terminal domain
AAA_21               PF13304.1    303 sp|O83527|UVRA_TREPA -            960   1.3e-09   38.4   0.4   1   3   0.00049      0.28   11.1   0.1   177   285   480   552   433   562 0.72 AAA domain
AAA_21               PF13304.1    303 sp|O83527|UVRA_TREPA -            960   1.3e-09   38.4   0.4   3   3   9.3e-05     0.053   13.4   0.0   237   293   846   902   837   912 0.79 AAA domain
AAA_29               PF13555.1     62 sp|O83527|UVRA_TREPA -            960   8.7e-09   34.7   0.0   1   2   0.00052       0.3   10.6   0.0    19    39    25    44    13    60 0.75 P-loop containing region of AAA domain
AAA_29               PF13555.1     62 sp|O83527|UVRA_TREPA -            960   8.7e-09   34.7   0.0   2   2   2.6e-07   0.00015   21.2   0.0    12    51   640   675   631   683 0.76 P-loop containing region of AAA domain
AAA_25               PF13481.1    194 sp|O83527|UVRA_TREPA -            960   1.4e-07   31.1   0.0   1   2   7.9e-05     0.045   13.1   0.0    26    55    21    50    10    55 0.86 AAA domain
AAA_25               PF13481.1    194 sp|O83527|UVRA_TREPA -            960   1.4e-07   31.1   0.0   2   2     3e-05     0.017   14.5   0.0    29    58   646   675   638   706 0.77 AAA domain
AAA_23               PF13476.1    202 sp|O83527|UVRA_TREPA -            960   4.4e-06   27.1   0.0   1   2    0.0015      0.83    9.9   0.0     4    35    10    44     7    49 0.77 AAA domain
AAA_23               PF13476.1    202 sp|O83527|UVRA_TREPA -            960   4.4e-06   27.1   0.0   2   2   6.8e-05     0.039   14.2   0.0    21    55   652   689   638   726 0.82 AAA domain
DUF258               PF03193.11   161 sp|O83527|UVRA_TREPA -            960   9.1e-06   24.9   0.0   1   2   0.00096      0.55    9.4   0.0    21    52    13    45     3    65 0.81 Protein of unknown function, DUF258
DUF258               PF03193.11   161 sp|O83527|UVRA_TREPA -            960   9.1e-06   24.9   0.0   2   2   0.00013     0.076   12.1   0.0    14    60   628   676   619   693 0.78 Protein of unknown function, DUF258
AAA_16               PF13191.1    185 sp|O83527|UVRA_TREPA -            960   9.4e-05   22.4   5.9   1   2    0.0011      0.64    9.9   0.6    25    41    29    61    13   237 0.59 AAA ATPase domain
AAA_16               PF13191.1    185 sp|O83527|UVRA_TREPA -            960   9.4e-05   22.4   5.9   2   2    0.0001     0.057   13.4   0.0    18    44   644   670   634   696 0.78 AAA ATPase domain
AAA_22               PF13401.1    131 sp|O83527|UVRA_TREPA -            960    0.0012   19.0   1.4   2   2    0.0017      0.95    9.6   0.0     4    21   650   667   647   686 0.87 AAA domain
DnaJ_CXXCXGXG        PF00684.14    66 sp|O83527|UVRA_TREPA -            960     0.025   14.6   0.2   3   3   4.3e-05     0.025   14.6   0.2    17    51   755   786   747   791 0.88 DnaJ central domain
Viral_helicase1      PF01443.13   234 sp|O83527|UVRA_TREPA -            960     0.036   13.5   0.3   2   2    0.0017      0.99    8.8   0.0     2    21   654   673   653   691 0.84 Viral (Superfamily 1) RNA helicase
UvrB                 PF12344.3     44 sp|O83154|UVRB_TREPA -            668     2e-22   78.4   3.6   1   1   2.6e-25   3.8e-22   77.5   3.6     1    44   549   592   549   592 0.98 Ultra-violet resistance protein B
Helicase_C           PF00271.26    78 sp|O83154|UVRB_TREPA -            668   4.2e-16   58.5   0.0   1   1   6.7e-19     1e-15   57.3   0.0     3    77   463   542   461   543 0.96 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|O83154|UVRB_TREPA -            668   8.1e-10   38.8   0.0   1   1   2.3e-12   3.4e-09   36.7   0.0     6    77    14    83     9   145 0.84 Type III restriction enzyme, res subunit
UVR                  PF02151.14    36 sp|O83154|UVRB_TREPA -            668   2.2e-05   23.7   1.9   1   1   1.5e-08   2.2e-05   23.7   1.9     1    36   627   662   627   662 0.91 UvrB/uvrC motif
AAA_19               PF13245.1     76 sp|O83154|UVRB_TREPA -            668   0.00045   19.9   3.7   1   3   3.4e-06     0.005   16.5   0.1     6    35    26    56    18    79 0.76 Part of AAA domain
DEAD                 PF00270.24   169 sp|O83154|UVRB_TREPA -            668    0.0014   18.1   0.0   1   2   8.9e-06     0.013   14.9   0.0    19    70    36    82    15   103 0.80 DEAD/DEAH box helicase
UB2H                 PF14814.1     85 sp|O83154|UVRB_TREPA -            668     0.017   14.8   0.0   1   1   3.7e-05     0.054   13.2   0.0     3    43   162   202   160   205 0.93 Bifunctional transglycosylase second domain
AAA_30               PF13604.1    196 sp|O83154|UVRB_TREPA -            668     0.039   13.5   3.7   1   2   0.00046      0.68    9.4   0.1     6    40    16    53    13    77 0.75 AAA domain
UvrC_HhH_N           PF08459.6    155 sp|O83485|UVRC_TREPA -            691   9.1e-52  174.7   0.0   1   1   5.6e-55   2.1e-51  173.5   0.0     1   155   444   594   444   594 0.97 UvrC Helix-hairpin-helix N-terminal
GIY-YIG              PF01541.19    80 sp|O83485|UVRC_TREPA -            691   7.4e-09   35.8   0.0   1   1   7.1e-12   2.6e-08   34.0   0.0     2    80    22    96    21    96 0.86 GIY-YIG catalytic domain
UVR                  PF02151.14    36 sp|O83485|UVRC_TREPA -            691   5.7e-07   28.8   5.1   1   1   1.5e-10   5.7e-07   28.8   5.1     4    34   207   237   204   237 0.93 UvrB/uvrC motif
HHH_2                PF12826.2     64 sp|O83485|UVRC_TREPA -            691   7.6e-05   22.5   0.0   2   2   9.3e-08   0.00034   20.4   0.0     9    48   614   653   610   662 0.85 Helix-hairpin-helix motif
ATP-synt_ab          PF00006.20   215 sp|O83441|VATA1_TREPA -            589   4.4e-77  258.4   0.0   1   1   1.4e-80   6.9e-77  257.7   0.0     1   215   218   440   218   440 0.99 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_C        PF00306.22   113 sp|O83441|VATA1_TREPA -            589   1.3e-12   48.1   0.0   1   1   4.9e-16   2.4e-12   47.3   0.0     8   112   455   564   449   565 0.94 ATP synthase alpha/beta chain, C terminal domain
ATP-synt_ab_N        PF02874.18    69 sp|O83441|VATA1_TREPA -            589   1.1e-08   35.1   3.7   1   1   7.3e-12   3.6e-08   33.4   3.7     1    69     8    72     8    72 0.96 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab          PF00006.20   215 sp|O83541|VATA2_TREPA -            605   1.4e-86  289.4   0.0   1   1   4.3e-90   2.1e-86  288.8   0.0     1   215   221   443   221   443 0.99 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_C        PF00306.22   113 sp|O83541|VATA2_TREPA -            605   1.7e-13   51.0   0.0   1   1   6.9e-17   3.4e-13   50.0   0.0     4   106   464   585   461   591 0.75 ATP synthase alpha/beta chain, C terminal domain
ATP-synt_ab_N        PF02874.18    69 sp|O83541|VATA2_TREPA -            605     2e-10   40.7   1.9   1   1   8.4e-14   4.2e-10   39.7   1.9     1    67    11    71    11    73 0.97 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab          PF00006.20   215 sp|O83442|VATB1_TREPA -            430   9.3e-45  152.7   0.0   1   1   3.7e-48   1.4e-44  152.1   0.0     1   196   126   318   126   323 0.99 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_N        PF02874.18    69 sp|O83442|VATB1_TREPA -            430   8.4e-09   35.5   0.5   1   1   4.2e-12   1.6e-08   34.6   0.5     2    69     9    71     8    71 0.94 ATP synthase alpha/beta family, beta-barrel domain
CDC24                PF06395.6     89 sp|O83442|VATB1_TREPA -            430      0.07   13.1   0.0   1   1   4.2e-05      0.16   12.0   0.0     8    32   122   146   114   163 0.88 CDC24 Calponin
MoCF_biosynth        PF00994.19   144 sp|O83442|VATB1_TREPA -            430      0.13   11.6   0.0   1   1   7.1e-05      0.26   10.6   0.0    46   100   156   207   142   251 0.70 Probable molybdopterin binding domain
ATP-synt_ab          PF00006.20   215 sp|O83540|VATB2_TREPA -            480   2.4e-59  200.4   0.0   1   1   6.2e-63   3.1e-59  200.0   0.0     1   215   131   350   131   350 0.98 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_C        PF00306.22   113 sp|O83540|VATB2_TREPA -            480   6.6e-16   58.7   0.0   1   1   2.6e-19   1.3e-15   57.8   0.0     3   105   369   460   367   471 0.90 ATP synthase alpha/beta chain, C terminal domain
ATP-synt_ab_N        PF02874.18    69 sp|O83540|VATB2_TREPA -            480   3.7e-09   36.6   0.0   1   1   2.6e-12   1.3e-08   34.9   0.0     2    62    10    68     9    74 0.92 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_D           PF01813.12   196 sp|O83443|VATD1_TREPA -            206   4.5e-44  150.3   1.2   1   1     7e-48   5.2e-44  150.1   1.2     1   196     8   193     8   193 0.98 ATP synthase subunit D
GCN5L1               PF06320.8    121 sp|O83443|VATD1_TREPA -            206      0.03   14.1   0.7   1   1   9.5e-06      0.07   12.9   0.7    34    78    23    67     4    82 0.85 GCN5-like protein 1 (GCN5L1)
ATP-synt_D           PF01813.12   196 sp|O83539|VATD2_TREPA -            209   3.9e-47  160.3   0.7   1   1   2.9e-51   4.4e-47  160.1   0.7     2   195    11   201    10   202 0.99 ATP synthase subunit D
ATP-synt_B           PF00430.13   132 sp|O83439|VATE_TREPA -            232     0.005   16.6   5.4   1   1   2.1e-06    0.0076   16.0   5.4    53   104     6    57     2    73 0.77 ATP synthase B/B' CF(0)
DivIVA               PF05103.8    131 sp|O83439|VATE_TREPA -            232     0.026   14.5   1.3   1   1   1.1e-05     0.041   13.9   1.3    83   114     5    36     2    51 0.69 DivIVA protein
HrpE                 PF06188.7    191 sp|O83439|VATE_TREPA -            232     0.069   12.8   1.5   1   1   2.9e-05      0.11   12.2   1.5    29    93     6    66     2    94 0.78 HrpE/YscL/FliH and V-type ATPase subunit E
vATP-synt_E          PF01991.13   198 sp|O83439|VATE_TREPA -            232     0.094   11.9   4.8   1   1   4.1e-05      0.15   11.3   4.8    20   128     4   110     2   131 0.61 ATP synthase (E/31 kDa) subunit
V_ATPase_I           PF01496.14   759 sp|O83444|VATI1_TREPA -            622   1.2e-45  155.7  13.5   2   3   9.2e-24   6.8e-20   70.5   0.4   324   515   289   451   217   466 0.75 V-type ATPase 116kDa subunit family
V_ATPase_I           PF01496.14   759 sp|O83444|VATI1_TREPA -            622   1.2e-45  155.7  13.5   3   3   3.1e-29   2.3e-25   88.6   4.7   650   757   518   620   512   622 0.96 V-type ATPase 116kDa subunit family
V_ATPase_I           PF01496.14   759 sp|O83544|VATI2_TREPA -            454   2.7e-29  101.6   0.0   1   1   2.3e-33   3.4e-29  101.2   0.0   282   452   160   326   139   389 0.74 V-type ATPase 116kDa subunit family
TroA                 PF01297.12   256 sp|O83077|Y034_TREPA -            316   7.3e-71  238.4   0.1   1   1   5.6e-75   8.3e-71  238.2   0.1     1   255    36   307    36   308 0.93 Periplasmic solute binding protein family
ABC_tran             PF00005.22   137 sp|O83078|Y035_TREPA -            238     6e-24   84.9   0.0   1   1   2.1e-26   1.5e-23   83.5   0.0     1   134    27   156    27   159 0.92 ABC transporter
AAA_21               PF13304.1    303 sp|O83078|Y035_TREPA -            238   1.2e-07   32.0   0.2   1   2   2.5e-05     0.019   14.9   0.1     4    23    42    61    40    78 0.83 AAA domain
AAA_21               PF13304.1    303 sp|O83078|Y035_TREPA -            238   1.2e-07   32.0   0.2   2   2   2.9e-05     0.021   14.7   0.0   231   293   125   185    80   187 0.78 AAA domain
AAA_29               PF13555.1     62 sp|O83078|Y035_TREPA -            238   8.2e-05   22.0   0.0   1   1     2e-07   0.00015   21.2   0.0    21    51    35    65    24    76 0.78 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|O83078|Y035_TREPA -            238     9e-05   22.5   0.1   1   1   4.7e-07   0.00035   20.6   0.1    25    88    38   109    22   185 0.52 AAA ATPase domain
SMC_N                PF02463.14   220 sp|O83078|Y035_TREPA -            238    0.0001   21.6   0.0   1   2   0.00014       0.1   11.7   0.0    27    42    40    55    25    68 0.83 RecF/RecN/SMC N terminal domain
AAA_25               PF13481.1    194 sp|O83078|Y035_TREPA -            238   0.00016   21.1   0.0   1   1   4.6e-07   0.00034   20.0   0.0    29   188    33   189    16   191 0.69 AAA domain
AAA_22               PF13401.1    131 sp|O83078|Y035_TREPA -            238    0.0035   17.4   0.2   1   1   1.6e-05     0.012   15.7   0.2     7   100    40   162    36   194 0.51 AAA domain
MobB                 PF03205.9    140 sp|O83078|Y035_TREPA -            238    0.0061   16.2   0.2   1   1   1.5e-05     0.011   15.4   0.2     3    28    40    65    38    76 0.84 Molybdopterin guanine dinucleotide synthesis protein B
AAA_10               PF12846.2    304 sp|O83078|Y035_TREPA -            238    0.0093   15.4   0.1   1   2   8.6e-05     0.063   12.6   0.1     5    23    41    59    37   112 0.85 AAA-like domain
NTPase_1             PF03266.10   168 sp|O83078|Y035_TREPA -            238     0.012   15.3   0.3   1   2   7.8e-05     0.058   13.1   0.1     3    37    41    71    39    86 0.79 NTPase
NACHT                PF05729.7    166 sp|O83078|Y035_TREPA -            238     0.013   15.1   0.0   1   1   4.5e-05     0.034   13.8   0.0     3    28    40    65    38    98 0.84 NACHT domain
DUF258               PF03193.11   161 sp|O83078|Y035_TREPA -            238     0.014   14.5   0.0   1   2   9.6e-05     0.071   12.2   0.0    36    70    38    72    17    89 0.85 Protein of unknown function, DUF258
AAA                  PF00004.24   132 sp|O83078|Y035_TREPA -            238     0.022   14.9   0.1   1   1   0.00011     0.083   13.0   0.1     3   107    42   186    40   201 0.59 ATPase family associated with various cellular activities (AAA)
Mg_chelatase         PF01078.16   207 sp|O83078|Y035_TREPA -            238     0.053   12.6   0.0   1   1   0.00012     0.086   11.9   0.0    22    69    37    84    25    95 0.85 Magnesium chelatase, subunit ChlI
Miro                 PF08477.8    119 sp|O83078|Y035_TREPA -            238     0.053   14.0   0.0   1   1   0.00014      0.11   13.0   0.0     3    25    41    63    40    98 0.82 Miro-like protein
AAA_33               PF13671.1    143 sp|O83078|Y035_TREPA -            238     0.069   13.0   0.0   1   1   0.00017      0.12   12.2   0.0     4    77    42   113    40   132 0.62 AAA domain
AAA_5                PF07728.9    139 sp|O83078|Y035_TREPA -            238     0.083   12.6   0.1   1   1   0.00031      0.23   11.1   0.1     4    27    42    65    40    72 0.85 AAA domain (dynein-related subfamily)
Adeno_IVa2           PF02456.10   370 sp|O83078|Y035_TREPA -            238       0.1   11.2   0.0   1   1   0.00022      0.17   10.5   0.0    91   135    41    83    34    91 0.89 Adenovirus IVa2 protein
AAA_23               PF13476.1    202 sp|O83078|Y035_TREPA -            238      0.16   12.2   0.0   1   1   0.00037      0.27   11.5   0.0    24    36    42    54    29    61 0.90 AAA domain
DUF87                PF01935.12   229 sp|O83078|Y035_TREPA -            238      0.33   10.7   1.8   1   1    0.0005      0.37   10.5   0.6    27    48    41    62    38    69 0.84 Domain of unknown function DUF87
ABC-3                PF00950.12   258 sp|O83079|Y036_TREPA -            266   9.2e-53  179.1  34.1   1   1   2.2e-56   1.1e-52  178.9  34.1     1   256     3   257     3   259 0.98 ABC 3 transport family
FecCD                PF01032.13   311 sp|O83079|Y036_TREPA -            266   3.9e-06   25.9  30.6   1   1   7.9e-10   3.9e-06   25.9  30.6    87   309    48   256    35   258 0.75 FecCD transport family
HlyIII               PF03006.15   222 sp|O84000|Y1037_TREPA -            238   8.7e-45  152.8  27.2   1   1   2.7e-48   9.9e-45  152.6  27.2     2   222    32   231    31   231 0.95 Haemolysin-III related
DUF962               PF06127.6     95 sp|O84000|Y1037_TREPA -            238      0.02   14.7   3.1   1   2   1.7e-05     0.063   13.1   0.0    17    61    36   178    19   186 0.86 Protein of unknown function (DUF962)
DUF423               PF04241.10    89 sp|O84000|Y1037_TREPA -            238     0.044   13.6   0.5   3   3   1.2e-05     0.044   13.6   0.5    30    82   166   217   162   227 0.88 Protein of unknown function (DUF423)
Fer4_12              PF13353.1    139 sp|O83158|Y121_TREPA -            355   2.2e-07   31.0   0.0   1   1   9.1e-11   3.4e-07   30.4   0.0     9    88   102   180    94   211 0.82 4Fe-4S single cluster domain
Radical_SAM          PF04055.16   166 sp|O83158|Y121_TREPA -            355   3.4e-06   27.3   0.0   1   1     2e-09   7.4e-06   26.2   0.0     4   113   105   219   102   259 0.75 Radical SAM superfamily
Fer4_14              PF13394.1    119 sp|O83158|Y121_TREPA -            355   6.6e-06   26.1   0.0   1   1     3e-09   1.1e-05   25.4   0.0     5    96   105   193   101   209 0.80 4Fe-4S single cluster domain
LAM_C                PF12544.3    127 sp|O83158|Y121_TREPA -            355    0.0051   16.8   0.0   1   1   2.6e-06    0.0096   15.9   0.0     4    30   298   324   296   332 0.88 Lysine-2,3-aminomutase
DUF687               PF05095.7    542 sp|O83170|Y134_TREPA -            376      0.22    9.8   0.3   2   2     7e-05      0.52    8.6   0.1     7    51   189   233   184   258 0.88 Protein of unknown function (DUF687)
Kelch_4              PF13418.1     49 sp|O83170|Y134_TREPA -            376      0.42   10.4   2.8   2   2   8.5e-05      0.63    9.8   0.7    28    43   360   375   354   376 0.82 Galactose oxidase, central domain
YajC                 PF02699.10    83 sp|P58007|Y40A_TREPA -            135   1.4e-20   72.7   0.1   1   1   1.2e-24   1.8e-20   72.3   0.1     9    82    32   105    24   106 0.93 Preprotein translocase subunit
Transcrip_reg        PF01709.15   234 sp|O83487|Y474_TREPA -            245   2.9e-99  330.9   0.1   1   1  4.4e-103   3.2e-99  330.7   0.1     1   234     5   238     5   238 0.99 Transcriptional regulator
CITED                PF04487.7    214 sp|O83487|Y474_TREPA -            245     0.065   13.4   0.0   1   1   1.5e-05      0.11   12.7   0.0   162   185   142   165   104   167 0.77 CITED
UPF0164              PF03687.8    331 sp|O83559|Y548_TREPA -            426  3.5e-121  403.7  13.5   1   1  8.6e-125  4.3e-121  403.5  13.5     3   331    18   328    16   328 0.98 Uncharacterised protein family (UPF0164)
TPR_2                PF07719.12    34 sp|O83559|Y548_TREPA -            426     0.019   14.8   0.0   1   1   7.9e-06     0.039   13.8   0.0     5    33   370   398   366   399 0.91 Tetratricopeptide repeat
TPR_11               PF13414.1     69 sp|O83559|Y548_TREPA -            426      0.13   11.9   0.0   1   1   5.1e-05      0.25   11.0   0.0    10    35   373   398   367   410 0.91 TPR repeat
UPF0118              PF01594.11   327 sp|O83564|Y553_TREPA -            403   4.5e-38  131.0  22.2   2   2     3e-42   4.5e-38  131.0  22.2    45   324    85   371    78   374 0.85 Domain of unknown function DUF20
Peptidase_M50        PF02163.17   192 sp|O83609|Y600_TREPA -            450   6.7e-57  191.5   4.4   1   1   2.7e-60     8e-57  191.3   4.4     3   192     8   444     6   444 0.99 Peptidase family M50
PDZ_2                PF13180.1     82 sp|O83609|Y600_TREPA -            450   1.2e-15   57.1   0.0   1   2     2e-08     6e-05   22.8   0.0    15    80   137   201   124   202 0.86 PDZ domain
PDZ_2                PF13180.1     82 sp|O83609|Y600_TREPA -            450   1.2e-15   57.1   0.0   2   2   2.7e-11   7.9e-08   32.0   0.0    17    81   223   286   218   287 0.92 PDZ domain
PDZ                  PF00595.19    81 sp|O83609|Y600_TREPA -            450   3.9e-10   39.7   0.0   1   2   3.2e-07   0.00096   19.2   0.0    24    64   135   175   119   184 0.85 PDZ domain (Also known as DHR or GLGF)
PDZ                  PF00595.19    81 sp|O83609|Y600_TREPA -            450   3.9e-10   39.7   0.0   2   2   6.8e-07     0.002   18.2   0.0    25    64   220   259   188   275 0.72 PDZ domain (Also known as DHR or GLGF)
Tricorn_PDZ          PF14685.1     88 sp|O83609|Y600_TREPA -            450   1.2e-06   28.2   0.0   1   2   1.3e-05     0.038   13.7   0.0    19    79   135   193   132   201 0.84 Tricorn protease PDZ domain
Tricorn_PDZ          PF14685.1     88 sp|O83609|Y600_TREPA -            450   1.2e-06   28.2   0.0   2   2   4.9e-05      0.15   11.9   0.0    44    83   242   280   225   285 0.83 Tricorn protease PDZ domain
Peptidase_M50B       PF13398.1    200 sp|O83609|Y600_TREPA -            450      0.46    9.8  11.3   1   2   2.3e-05     0.068   12.5   0.8    23    52    13    87     5   131 0.65 Peptidase M50B-like
Peptidase_S66        PF02016.10   284 sp|P96129|Y688_TREPA -            337   1.3e-76  257.2   0.0   1   1     2e-80   1.5e-76  257.1   0.0     1   284    19   318    19   318 0.98 LD-carboxypeptidase
DUF188               PF02639.9    130 sp|O83817|Y845_TREPA -            177   3.1e-34  117.1   0.1   1   1   2.6e-38   3.8e-34  116.9   0.1     2   128    18   144    17   146 0.98 Uncharacterized BCR, YaiI/YqxD family COG1671
UPF0164              PF03687.8    331 sp|O83828|Y856_TREPA -            325  2.8e-120  400.8   3.0   1   1  2.3e-124  3.4e-120  400.5   3.0     1   287     1   316     1   322 0.99 Uncharacterised protein family (UPF0164)
UPF0164              PF03687.8    331 sp|O83830|Y858_TREPA -            396    9e-124  412.3   2.8   1   1  7.4e-128  1.1e-123  412.0   2.8     2   330     4   359     3   360 0.97 Uncharacterised protein family (UPF0164)
UPF0164              PF03687.8    331 sp|O83831|Y859_TREPA -            494  2.6e-139  463.3  10.7   1   1  4.5e-143  3.3e-139  463.0  10.7     6   331    64   398    60   398 0.99 Uncharacterised protein family (UPF0164)
TPR_2                PF07719.12    34 sp|O83831|Y859_TREPA -            494      0.08   12.8   1.6   1   1   2.9e-05      0.21   11.5   1.6     5    29   439   463   436   464 0.93 Tetratricopeptide repeat
UPF0164              PF03687.8    331 sp|O83837|Y865_TREPA -            479  1.8e-138  460.5   9.6   1   1  3.1e-142  2.3e-138  460.2   9.6     3   331    70   385    68   385 0.99 Uncharacterised protein family (UPF0164)
TPR_2                PF07719.12    34 sp|O83837|Y865_TREPA -            479     0.017   15.0   0.9   1   1   5.9e-06     0.044   13.7   0.6     5    30   423   448   419   452 0.90 Tetratricopeptide repeat
KH_4                 PF13083.1     73 sp|O83876|Y906_TREPA -             80   6.3e-19   67.3   0.0   1   1   9.6e-23   7.1e-19   67.2   0.0     1    73     6    78     6    78 0.98 KH domain
KH_1                 PF00013.24    60 sp|O83876|Y906_TREPA -             80     0.001   18.6   0.0   1   1     2e-07    0.0015   18.1   0.0     3    31    37    65    35    78 0.87 KH domain
UPF0102              PF02021.12    93 sp|O83883|Y913_TREPA -            126   8.8e-38  128.1   0.5   1   1   6.4e-41   1.1e-37  127.8   0.5     2    92    12   103    11   104 0.98 Uncharacterised protein family UPF0102
DUF234               PF03008.9    100 sp|O83883|Y913_TREPA -            126   0.00088   19.3   0.2   1   1   1.1e-06    0.0019   18.2   0.1    59    89    27    56     6    77 0.85 Archaea bacterial proteins of unknown function
DUF4143              PF13635.1     90 sp|O83883|Y913_TREPA -            126   0.00096   19.2   0.0   1   1   1.1e-06    0.0018   18.4   0.0    36    88     4    55     1    56 0.77 Domain of unknown function (DUF4143)
NERD                 PF08378.6    115 sp|O83883|Y913_TREPA -            126    0.0031   17.7   0.0   1   1   2.1e-06    0.0035   17.5   0.0     2    59     9    58     8   114 0.71 Nuclease-related domain
Hjc                  PF01870.13    88 sp|O83883|Y913_TREPA -            126    0.0052   16.3   0.2   1   1   4.3e-06     0.007   15.9   0.2    23    68    36    86    13   104 0.76 Archaeal holliday junction resolvase (hjc)
Mrr_cat              PF04471.7    115 sp|O83883|Y913_TREPA -            126     0.011   15.4   0.1   1   1   2.4e-05     0.039   13.7   0.1    10    98    13    93     6   108 0.75 Restriction endonuclease
DUF91                PF01939.11   228 sp|O83883|Y913_TREPA -            126      0.04   13.0   0.1   1   1   3.5e-05     0.058   12.5   0.1   120   159    21    59    16    90 0.79 Protein of unknown function DUF91
F420_oxidored        PF03807.12    96 sp|O83883|Y913_TREPA -            126     0.047   14.1   0.1   2   2   0.00032      0.53   10.7   0.0    27    70    66   106    55   114 0.80 NADP oxidoreductase coenzyme F420-dependent
GSH-S_N              PF02951.9    119 sp|O83883|Y913_TREPA -            126     0.054   13.3   0.0   1   1   4.4e-05     0.073   12.8   0.0    30    88    45   107    37   118 0.75 Prokaryotic glutathione synthetase, N-terminal domain
DUF3238              PF11579.3    194 sp|O83933|Y967_TREPA -            517     0.018   14.6   0.0   1   1   3.1e-06     0.046   13.3   0.0    36   119    40   129    28   148 0.68 Protein of unknown function (DUF3238)
CPSF100_C            PF13299.1    161 sp|O83934|Y968_TREPA -            540     0.034   14.3   0.2   2   3   2.2e-05      0.32   11.1   0.0    49   110   186   248   149   256 0.82 Cleavage and polyadenylation factor 2 C-terminal
UPF0054              PF02130.12   145 sp|O83656|YBEY_TREPA -            160   2.3e-33  114.5   0.0   1   1   1.9e-37   2.8e-33  114.2   0.0    27   143    32   147    12   148 0.90 Uncharacterized protein family UPF0054
60KD_IMP             PF02096.15   198 sp|O66103|YIDC_TREPA -            622   2.7e-61  206.6  14.7   1   1   5.9e-65   4.3e-61  206.0  14.7     1   196   415   616   415   618 0.96 60Kd inner membrane protein
YidC_periplas        PF14849.1    270 sp|O66103|YIDC_TREPA -            622   1.5e-16   61.1   0.0   1   1   3.4e-20   2.5e-16   60.3   0.0     2   251    90   373    89   388 0.66 YidC periplasmic domain
