#                                                                            --- full sequence --- -------------- this domain -------------   hmm coord   ali coord   env coord
# target name        accession   tlen query name           accession   qlen   E-value  score  bias   #  of  c-Evalue  i-Evalue  score  bias  from    to  from    to  from    to  acc description of target
#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
AlkA_N               PF06029.6    116 sp|P04395|3MG2_ECOLI -            282   4.4e-28   97.6   0.0   1   1     1e-31   7.4e-28   96.9   0.0     3   116     3   112     1   112 0.98 AlkA N-terminal domain
HhH-GPD              PF00730.20   108 sp|P04395|3MG2_ECOLI -            282   4.2e-15   55.9   0.0   1   1   9.3e-19   6.9e-15   55.2   0.0     1   107   118   261   118   263 0.93 HhH-GPD superfamily base excision DNA repair protein
HD_3                 PF13023.1    165 sp|P76491|5DNU_ECOLI -            199   6.5e-18   65.0   0.6   1   1   2.2e-21     8e-18   64.7   0.6     2   145    11   160    10   181 0.83 HD domain
HD_2                 PF12917.2    215 sp|P76491|5DNU_ECOLI -            199   6.7e-14   52.1   0.1   1   1   2.1e-17   7.7e-14   51.9   0.1     5   189     5   186     1   197 0.89 HD containing hydrolase-like enzyme
HD                   PF01966.17   122 sp|P76491|5DNU_ECOLI -            199   9.6e-08   32.0   0.2   1   1   3.4e-11   1.2e-07   31.7   0.2     2   119    31   139    30   178 0.83 HD domain
HDOD                 PF08668.7    196 sp|P76491|5DNU_ECOLI -            199      0.02   14.1   0.0   1   1   7.8e-06     0.029   13.6   0.0    87   163    22   102     5   110 0.81 HDOD domain
5-FTHF_cyc-lig       PF01812.15   186 sp|P0AC28|5FCL_ECOLI -            182   2.1e-41  141.7   0.0   1   1   1.6e-45   2.3e-41  141.5   0.0     9   186     3   176     1   176 0.97 5-formyltetrahydrofolate cyclo-ligase family
6PGD                 PF00393.14   291 sp|P00350|6PGD_ECOLI -            468  3.7e-141  469.4   0.1   1   1  4.2e-144  5.6e-141  468.8   0.1     1   290   179   466   179   467 1.00 6-phosphogluconate dehydrogenase, C-terminal domain
NAD_binding_2        PF03446.10   163 sp|P00350|6PGD_ECOLI -            468   2.4e-52  177.0   0.0   1   1   3.8e-55   5.2e-52  175.9   0.0     1   162     3   174     3   175 0.97 NAD binding domain of 6-phosphogluconate dehydrogenase
ApbA                 PF02558.11   151 sp|P00350|6PGD_ECOLI -            468   0.00018   20.9   0.0   1   1   3.2e-07   0.00043   19.7   0.0     1    98     6    98     6   119 0.83 Ketopantoate reductase PanE/ApbA
Shikimate_DH         PF01488.15   135 sp|P00350|6PGD_ECOLI -            468   0.00083   19.4   0.0   1   1   1.4e-06    0.0019   18.3   0.0    11    70     2    61     1    74 0.84 Shikimate / quinate 5-dehydrogenase
F420_oxidored        PF03807.12    96 sp|P00350|6PGD_ECOLI -            468    0.0014   19.0   0.0   1   1   2.8e-06    0.0038   17.6   0.0     1    92     5    99     5   103 0.80 NADP oxidoreductase coenzyme F420-dependent
3HCDH_N              PF02737.13   180 sp|P00350|6PGD_ECOLI -            468    0.0081   15.8   0.0   1   1   1.1e-05     0.014   15.0   0.0     1    40     5    44     5    70 0.91 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
NAD_Gly3P_dh_N       PF01210.18   157 sp|P00350|6PGD_ECOLI -            468     0.022   14.4   0.0   1   1   3.7e-05      0.05   13.3   0.0     1   104     5   102     5   139 0.75 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
2-Hacid_dh_C         PF02826.14   178 sp|P00350|6PGD_ECOLI -            468     0.048   12.8   0.0   1   1   6.5e-05     0.087   11.9   0.0    35    74     2    43     1    86 0.80 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
IlvN                 PF07991.7    165 sp|P00350|6PGD_ECOLI -            468     0.067   12.5   0.0   1   2   0.00029      0.39   10.0   0.0     3    48     2    48     1    98 0.81 Acetohydroxy acid isomeroreductase, catalytic domain
NAD_binding_11       PF14833.1    122 sp|P00350|6PGD_ECOLI -            468      0.17   11.9   0.3   1   1   0.00044      0.59   10.1   0.1     1    29   177   205   177   220 0.89 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
Lactonase            PF10282.4    345 sp|P52697|6PGL_ECOLI -            331   4.3e-87  292.4   0.0   1   1   1.1e-90   5.4e-87  292.0   0.0     2   344     5   327     4   328 0.95 Lactonase, 7-bladed beta-propeller
SGL                  PF08450.7    246 sp|P52697|6PGL_ECOLI -            331   1.6e-08   34.2   0.0   1   2   0.00017      0.86    8.9   0.0    13   171     4   164     1   178 0.69 SMP-30/Gluconolaconase/LRE-like region
SGL                  PF08450.7    246 sp|P52697|6PGL_ECOLI -            331   1.6e-08   34.2   0.0   2   2   1.5e-08   7.2e-05   22.2   0.0   139   212   234   304   207   312 0.79 SMP-30/Gluconolaconase/LRE-like region
HlyD                 PF00529.15   305 sp|P46482|AAEA_ECOLI -            310   2.9e-46  158.1  12.7   2   3   2.3e-18   5.7e-15   55.4   2.1     2    67    48   113    47   115 0.93 HlyD family secretion protein
HlyD                 PF00529.15   305 sp|P46482|AAEA_ECOLI -            310   2.9e-46  158.1  12.7   3   3   1.6e-34   3.8e-31  108.5   7.5   102   305   101   285    97   285 0.97 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P46482|AAEA_ECOLI -            310     7e-19   67.2   7.2   1   2   1.1e-21   2.8e-18   65.3   1.8     2    50    47    95    46    95 0.97 Biotin-lipoyl like
HlyD_2               PF12700.2    328 sp|P46482|AAEA_ECOLI -            310     2e-17   63.3   0.5   1   1   1.1e-20   2.7e-17   62.9   0.5    22   272    48   272    43   275 0.84 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P46482|AAEA_ECOLI -            310   1.5e-15   57.3   1.0   1   2   7.8e-05      0.19   12.0   0.1     6    49    54    99    50   112 0.80 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P46482|AAEA_ECOLI -            310   1.5e-15   57.3   1.0   2   2   2.1e-14   5.1e-11   42.8   0.1     1    94   156   249   156   278 0.83 HlyD family secretion protein
Biotin_lipoyl        PF00364.17    74 sp|P46482|AAEA_ECOLI -            310    0.0016   18.0   0.1   1   2   0.00011      0.26   10.9   0.1    47    74    51    78    47    79 0.80 Biotin-requiring enzyme
DUF3156              PF11354.3    161 sp|P46482|AAEA_ECOLI -            310     0.031   13.6   0.2   1   1   2.1e-05     0.052   12.9   0.2    62   124   107   172    87   178 0.78 Protein of unknown function (DUF3156)
FUSC                 PF04632.7    650 sp|P46481|AAEB_ECOLI -            655  8.6e-149  496.9  20.3   1   1  3.3e-152  9.7e-149  496.7  20.3     2   643    11   652    10   655 0.97 Fusaric acid resistance protein family
FUSC_2               PF13515.1    128 sp|P46481|AAEB_ECOLI -            655   2.7e-16   59.6  39.3   1   3   1.7e-17     5e-14   52.3  17.5     1   127    23   162    21   163 0.87 Fusaric acid resistance protein-like
FUSC_2               PF13515.1    128 sp|P46481|AAEB_ECOLI -            655   2.7e-16   59.6  39.3   2   3   0.00013      0.39   10.6  13.2     8   126   374   497   362   499 0.61 Fusaric acid resistance protein-like
ALMT                 PF11744.3    406 sp|P46481|AAEB_ECOLI -            655     5e-05   22.1   3.7   1   2   1.7e-08     5e-05   22.1   3.7    10   189    10   183     3   230 0.71 Aluminium activated malate transporter
DUF1656              PF07869.7     58 sp|P46478|AAEX_ECOLI -             67   7.3e-21   73.7  10.5   1   1   5.7e-25   8.5e-21   73.5  10.5     2    58     6    62     5    62 0.97 Protein of unknown function (DUF1656)
AMP-binding          PF00501.23   417 sp|P31119|AAS_ECOLI  -            719   1.3e-72  244.5   0.0   1   1   2.6e-76   1.9e-72  243.9   0.0    23   416   233   619   217   620 0.84 AMP-binding enzyme
Acyltransferase      PF01553.16   132 sp|P31119|AAS_ECOLI  -            719   3.4e-19   68.5   0.0   1   1   9.5e-23     7e-19   67.5   0.0     1   131    15   137    15   138 0.96 Acyltransferase
Aminotran_1_2        PF00155.16   363 sp|P00509|AAT_ECOLI  -            396   3.3e-96  322.4   0.0   1   1    5e-100   3.7e-96  322.2   0.0     3   363    28   392    26   392 0.98 Aminotransferase class I and II
DUF3763              PF12592.3     57 sp|P00509|AAT_ECOLI  -            396      0.16   11.5   0.9   1   1   4.7e-05      0.35   10.5   0.9     5    24   307   326   304   330 0.90 Protein of unknown function (DUF3763)
Aldedh               PF00171.17   462 sp|P77674|ABDH_ECOLI -            474  9.5e-166  551.6   0.1   1   1  1.5e-169  1.1e-165  551.5   0.1     3   462    13   470    11   470 0.97 Aldehyde dehydrogenase family
LuxC                 PF05893.9    400 sp|P77674|ABDH_ECOLI -            474     0.033   12.9   0.0   1   1   6.7e-06     0.049   12.3   0.0    76   220   126   268   122   317 0.66 Acyl-CoA reductase (LuxC)
Peptidase_M20        PF01546.23   189 sp|P77357|ABGA_ECOLI -            436   1.5e-24   86.5  13.2   1   1   5.8e-28   2.8e-24   85.6  13.2     1   189   112   429   112   429 0.92 Peptidase family M20/M25/M40
M20_dimer            PF07687.9    112 sp|P77357|ABGA_ECOLI -            436     2e-09   37.1   0.5   1   1   1.1e-12   5.2e-09   35.8   0.5     9   101   231   320   226   325 0.83 Peptidase dimerisation domain
Antimicrobial19      PF08225.6     23 sp|P77357|ABGA_ECOLI -            436       0.1   12.0   0.4   1   1     4e-05       0.2   11.1   0.4     4    19   163   178   159   179 0.92 Pseudin antimicrobial peptide
AmoA                 PF05145.7    318 sp|P75747|ABRB_ECOLI -            348    1e-114  382.8  34.4   1   1  8.7e-119  1.3e-114  382.5  34.4     1   317    29   343    29   344 0.99 Putative ammonia monooxygenase
ACCA                 PF03255.9    145 sp|P0ABD5|ACCA_ECOLI -            319   6.6e-65  217.1   0.2   1   1   1.9e-68   9.5e-65  216.5   0.2     2   145     5   151     4   151 0.97 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
Carboxyl_trans       PF01039.17   493 sp|P0ABD5|ACCA_ECOLI -            319   1.4e-18   66.5   0.1   1   1   3.6e-22   1.8e-18   66.2   0.1   272   473    85   288    58   300 0.84 Carboxyl transferase domain
MdcE                 PF06833.6    234 sp|P0ABD5|ACCA_ECOLI -            319   7.2e-06   25.3   0.0   1   1     2e-09   9.9e-06   24.9   0.0     5   176    88   262    84   313 0.81 Malonate decarboxylase gamma subunit (MdcE)
Carboxyl_trans       PF01039.17   493 sp|P0A9Q5|ACCD_ECOLI -            304   9.8e-20   70.3   0.0   1   1   1.1e-22   2.1e-19   69.2   0.0     7   181    54   241    51   302 0.77 Carboxyl transferase domain
zf-TFIIB             PF13453.1     41 sp|P0A9Q5|ACCD_ECOLI -            304     0.016   14.4   0.6   2   2   5.7e-05       0.1   11.7   0.1     2    16    46    60    45    72 0.87 Transcription factor zinc-finger
DZR                  PF12773.2     50 sp|P0A9Q5|ACCD_ECOLI -            304     0.049   13.4   0.4   1   1     5e-05     0.092   12.5   0.4    12    43    24    57    16    59 0.78 Double zinc ribbon
Auto_anti-p27        PF06677.7     41 sp|P0A9Q5|ACCD_ECOLI -            304     0.095   12.4   0.5   1   1   0.00011      0.21   11.3   0.5    19    41    26    50    24    50 0.93 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
zf-FPG_IleRS         PF06827.9     30 sp|P0A9Q5|ACCD_ECOLI -            304      0.11   12.1   1.4   1   1   0.00011       0.2   11.3   1.4     3    28    26    50    25    52 0.94 Zinc finger found in FPG and IleRS
Ogr_Delta            PF04606.7     47 sp|P0A9Q5|ACCD_ECOLI -            304      0.18   11.4   0.7   1   1   0.00022       0.4   10.3   0.1     2    20    46    64    45    70 0.88 Ogr/Delta-like zinc finger
OrfB_Zn_ribbon       PF07282.6     69 sp|P0A9Q5|ACCD_ECOLI -            304      0.21   11.2   2.6   1   1   0.00015      0.28   10.8   1.4    30    56    26    53    25    55 0.92 Putative transposase DNA-binding domain
AcetDehyd-dimer      PF09290.6    137 sp|P77580|ACDH_ECOLI -            316   1.1e-65  219.6   0.3   1   1   5.8e-69   1.7e-65  219.0   0.3     1   137   131   284   131   284 1.00 Prokaryotic acetaldehyde dehydrogenase, dimerisation
Semialdhyde_dh       PF01118.19   121 sp|P77580|ACDH_ECOLI -            316   1.8e-16   60.4   0.0   1   1   1.5e-19   4.5e-16   59.2   0.0     1   117     5   119     5   123 0.92 Semialdehyde dehydrogenase, NAD binding domain
GFO_IDH_MocA         PF01408.17   120 sp|P77580|ACDH_ECOLI -            316   0.00013   22.5   0.1   1   1   1.1e-07   0.00033   21.1   0.1     2    89     5    97     4    99 0.77 Oxidoreductase family, NAD-binding Rossmann fold
F420_oxidored        PF03807.12    96 sp|P77580|ACDH_ECOLI -            316    0.0016   18.8   1.8   1   1     1e-06    0.0031   17.9   0.1     1    47     5    51     5   101 0.85 NADP oxidoreductase coenzyme F420-dependent
ICL                  PF00463.16   526 sp|P0A9G6|ACEA_ECOLI -            434  3.3e-200  665.7   1.7   1   2  4.5e-118  3.3e-114  381.9   0.0     1   255     7   257     7   259 0.99 Isocitrate lyase family
ICL                  PF00463.16   526 sp|P0A9G6|ACEA_ECOLI -            434  3.3e-200  665.7   1.7   2   2   1.5e-88   1.1e-84  284.5   1.4   353   526   257   434   255   434 0.98 Isocitrate lyase family
PEP_mutase           PF13714.1    238 sp|P0A9G6|ACEA_ECOLI -            434   5.6e-19   68.2   0.0   1   1   2.2e-22   1.7e-18   66.7   0.0    26   198    81   315    71   348 0.85 Phosphoenolpyruvate phosphomutase
AceK                 PF06315.6    562 sp|P11071|ACEK_ECOLI -            578  6.8e-240  797.1   0.0   1   1  5.2e-244  7.7e-240  796.9   0.0     1   562     9   568     9   568 0.99 Isocitrate dehydrogenase kinase/phosphatase (AceK)
Acetate_kinase       PF00871.12   388 sp|P0A6A3|ACKA_ECOLI -            400  1.7e-173  576.5   0.1   1   1  2.7e-177    2e-173  576.4   0.1     2   388     6   393     5   393 0.99 Acetokinase family
BcrAD_BadFG          PF01869.15   271 sp|P0A6A3|ACKA_ECOLI -            400     0.011   14.9   0.1   1   1   4.4e-06     0.032   13.5   0.1   185   240   289   344   159   348 0.88 BadF/BadG/BcrA/BcrD ATPase family
Aconitase            PF00330.15   465 sp|P25516|ACNA_ECOLI -            891  1.4e-186  620.5   0.0   1   1  2.3e-190  1.7e-186  620.2   0.0     1   465    57   562    57   562 0.99 Aconitase family (aconitate hydratase)
Aconitase_C          PF00694.14   131 sp|P25516|ACNA_ECOLI -            891     9e-49  164.9   0.0   1   1   2.7e-52     2e-48  163.8   0.0     3   130   691   818   689   819 0.98 Aconitase C-terminal domain
Aconitase_2_N        PF06434.8    204 sp|P36683|ACNB_ECOLI -            865   1.7e-95  318.2   0.0   1   1   8.1e-99   2.4e-95  317.7   0.0     1   204   168   382   168   382 0.99 Aconitate hydratase 2 N-terminus
Aconitase_B_N        PF11791.3    154 sp|P36683|ACNB_ECOLI -            865   6.3e-68  227.4   0.1   1   1   3.8e-71   1.1e-67  226.6   0.1     1   154     4   156     4   156 1.00 Aconitate B N-terminal domain
Aconitase            PF00330.15   465 sp|P36683|ACNB_ECOLI -            865   2.4e-25   88.9   0.1   1   2   1.7e-12     5e-09   35.1   0.0   102   305   473   698   464   701 0.75 Aconitase family (aconitate hydratase)
Aconitase            PF00330.15   465 sp|P36683|ACNB_ECOLI -            865   2.4e-25   88.9   0.1   2   2   3.2e-17   9.6e-14   50.7   0.0   337   465   699   818   695   818 0.90 Aconitase family (aconitate hydratase)
Ketoacyl-synt_C      PF02801.17   119 sp|P36683|ACNB_ECOLI -            865     0.023   14.5   0.0   1   1   1.7e-05     0.052   13.4   0.0    58   105   686   731   683   743 0.81 Beta-ketoacyl synthase, C-terminal domain
DUF521               PF04412.8    400 sp|P36683|ACNB_ECOLI -            865     0.046   12.2   0.0   1   1   3.4e-05       0.1   11.1   0.0   284   371   696   787   684   809 0.82 Protein of unknown function (DUF521)
CoA_transf_3         PF02515.12   191 sp|P76518|ACOCT_ECOLI -            381   1.7e-65  219.8   0.0   1   1   1.5e-69   2.3e-65  219.4   0.0     1   191    74   262    74   262 0.99 CoA-transferase family III
DUF479               PF04336.7    106 sp|P21515|ACPH_ECOLI -            193   3.8e-32  110.5   2.9   1   1   3.8e-36   5.6e-32  110.0   2.9     1   105    81   186    81   187 0.99 Protein of unknown function, DUF479
ACPS                 PF01648.15   115 sp|P24224|ACPS_ECOLI -            126   4.8e-23   81.1   0.1   1   1   7.2e-27   5.4e-23   81.0   0.1     1   115     5   122     5   122 0.96 4'-phosphopantetheinyl transferase superfamily
Tecti-min-caps       PF09300.5     84 sp|P24224|ACPS_ECOLI -            126      0.11   12.3   0.0   1   2   3.1e-05      0.23   11.2   0.0    53    78    53    78    36    84 0.81 Tectiviridae, minor capsid
ACPS                 PF01648.15   115 sp|P37623|ACPT_ECOLI -            195   1.2e-11   44.4   0.0   1   1   1.2e-15   1.8e-11   43.8   0.0     2    75    88   154    87   190 0.79 4'-phosphopantetheinyl transferase superfamily
HlyD                 PF00529.15   305 sp|P0AE06|ACRA_ECOLI -            397   3.6e-80  269.5  14.3   1   1   1.2e-83   3.6e-80  269.5  14.3     1   305    65   361    65   361 0.99 HlyD family secretion protein
HlyD_2               PF12700.2    328 sp|P0AE06|ACRA_ECOLI -            397     5e-19   68.6   1.0   1   1   2.2e-22   6.4e-19   68.2   1.0     2   328    45   361    44   361 0.79 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P0AE06|ACRA_ECOLI -            397   2.2e-12   47.2   4.5   2   2   1.9e-13   5.5e-10   39.5   0.3     2   105   176   290   175   290 0.89 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P0AE06|ACRA_ECOLI -            397   9.1e-11   41.2   9.5   1   3   1.3e-10   3.9e-07   29.6   0.1     4    49    67   121    48   122 0.89 Biotin-lipoyl like
Biotin_lipoyl_2      PF13533.1     50 sp|P0AE06|ACRA_ECOLI -            397   9.1e-11   41.2   9.5   3   3   3.1e-06    0.0092   15.6   0.2     4    28   175   199   165   200 0.93 Biotin-lipoyl like
OEP                  PF02321.13   188 sp|P0AE06|ACRA_ECOLI -            397     0.019   14.5  11.8   1   1   1.7e-05     0.051   13.1  11.8   113   185   101   173    96   175 0.93 Outer membrane efflux protein
ACR_tran             PF00873.14  1021 sp|P31224|ACRB_ECOLI -           1049         0 1473.8  17.9   1   1         0         0 1473.6  17.9     1  1021     1  1030     1  1030 1.00 AcrB/AcrD/AcrF family
MMPL                 PF03176.10   333 sp|P31224|ACRB_ECOLI -           1049     4e-08   32.3  32.9   3   4   1.1e-10   5.2e-07   28.6  11.6   106   302   302   496   291   526 0.78 MMPL family
MMPL                 PF03176.10   333 sp|P31224|ACRB_ECOLI -           1049     4e-08   32.3  32.9   4   4     4e-06      0.02   13.6   7.8   144   305   872  1032   856  1044 0.82 MMPL family
SecD_SecF            PF02355.11   189 sp|P31224|ACRB_ECOLI -           1049   1.7e-06   27.3  28.0   1   2   3.9e-07    0.0019   17.4  13.9    32   187   339   497   332   499 0.81 Protein export membrane protein
SecD_SecF            PF02355.11   189 sp|P31224|ACRB_ECOLI -           1049   1.7e-06   27.3  28.0   2   2   1.6e-06    0.0078   15.4   6.1    37   182   877  1025   860  1032 0.85 Protein export membrane protein
ACR_tran             PF00873.14  1021 sp|P24177|ACRD_ECOLI -           1037         0 1450.9  10.0   1   1         0         0 1450.7  10.0     1  1021     1  1027     1  1027 1.00 AcrB/AcrD/AcrF family
MMPL                 PF03176.10   333 sp|P24177|ACRD_ECOLI -           1037     1e-12   47.4  29.9   2   3   2.5e-12   9.3e-09   34.4   9.1   138   317   333   513   310   537 0.82 MMPL family
MMPL                 PF03176.10   333 sp|P24177|ACRD_ECOLI -           1037     1e-12   47.4  29.9   3   3   1.5e-08   5.5e-05   22.0   6.7   145   311   871  1035   858  1037 0.85 MMPL family
SecD_SecF            PF02355.11   189 sp|P24177|ACRD_ECOLI -           1037   4.1e-09   35.8  20.7   1   2   6.3e-08   0.00023   20.3  11.8    24   186   331   496   311   499 0.79 Protein export membrane protein
SecD_SecF            PF02355.11   189 sp|P24177|ACRD_ECOLI -           1037   4.1e-09   35.8  20.7   2   2   5.9e-08   0.00022   20.4   1.5    38   178   876  1018   864  1029 0.80 Protein export membrane protein
Patched              PF02460.13   800 sp|P24177|ACRD_ECOLI -           1037       1.3    6.8  17.1   1   2   6.3e-06     0.023   12.6   9.9   645   797   337   495   294   498 0.82 Patched family
ACR_tran             PF00873.14  1021 sp|P24181|ACRF_ECOLI -           1034         0 1450.4  22.8   1   1         0         0 1450.2  22.8     1  1021     1  1029     1  1029 1.00 AcrB/AcrD/AcrF family
SecD_SecF            PF02355.11   189 sp|P24181|ACRF_ECOLI -           1034   1.2e-07   31.1  31.7   1   3   6.2e-07    0.0023   17.1  13.7    32   186   339   496   333   499 0.77 Protein export membrane protein
SecD_SecF            PF02355.11   189 sp|P24181|ACRF_ECOLI -           1034   1.2e-07   31.1  31.7   3   3   3.9e-08   0.00015   21.0   7.5    31   180   870  1018   856  1029 0.84 Protein export membrane protein
MMPL                 PF03176.10   333 sp|P24181|ACRF_ECOLI -           1034   9.5e-06   24.5   9.7   1   2   2.6e-09   9.5e-06   24.5   9.7   135   306   330   500   289   525 0.78 MMPL family
MMPL                 PF03176.10   333 sp|P24181|ACRF_ECOLI -           1034   9.5e-06   24.5   9.7   2   2   0.00015      0.57    8.8  13.1   141   302   868  1028   824  1032 0.79 MMPL family
DUF2085              PF09858.4     93 sp|P24181|ACRF_ECOLI -           1034         2    8.5   6.9   1   1   4.7e-05      0.18   11.9   0.3    32    89   879   936   865   939 0.86 Predicted membrane protein (DUF2085)
HlyD                 PF00529.15   305 sp|P24180|ACRE_ECOLI -            385   3.8e-81  272.7  13.6   1   1   1.8e-84   4.4e-81  272.5  13.6     1   305    64   360    64   360 0.99 HlyD family secretion protein
HlyD_2               PF12700.2    328 sp|P24180|ACRE_ECOLI -            385   4.6e-19   68.7   2.2   1   1   2.2e-22   5.4e-19   68.5   2.2     2   328    44   360    43   360 0.82 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P24180|ACRE_ECOLI -            385   1.3e-15   57.6   4.6   1   2   1.2e-05     0.029   14.6   0.0     2    36    67   100    66   139 0.82 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P24180|ACRE_ECOLI -            385   1.3e-15   57.6   4.6   2   2   1.1e-14   2.8e-11   43.7   0.3     1   105   174   289   174   289 0.94 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P24180|ACRE_ECOLI -            385   3.6e-13   48.9   0.2   1   2   1.3e-11   3.2e-08   33.0   0.1     4    49    66   111    59   121 0.88 Biotin-lipoyl like
Biotin_lipoyl_2      PF13533.1     50 sp|P24180|ACRE_ECOLI -            385   3.6e-13   48.9   0.2   2   2     4e-05     0.099   12.3   0.0     4    29   174   199   165   199 0.94 Biotin-lipoyl like
FixH                 PF05751.6    146 sp|P24180|ACRE_ECOLI -            385     0.044   13.5   1.2   1   2   9.3e-05      0.23   11.2   0.4    37    88   134   184   130   213 0.80 FixH
Tail_tube            PF10618.4    119 sp|P24180|ACRE_ECOLI -            385       0.3   10.8   2.4   2   2   0.00017      0.43   10.3   0.1    75   110   241   276   233   278 0.91 Phage tail tube protein
DUF2592              PF10766.4     41 sp|P0AAW9|ACRZ_ECOLI -             49   1.1e-26   91.8   4.7   1   1   8.2e-31   1.2e-26   91.7   4.7     1    41     4    44     4    44 0.98 Protein of unknown function (DUF2592)
AMP-binding          PF00501.23   417 sp|P27550|ACSA_ECOLI -            652     5e-98  328.2   0.0   1   1  8.2e-102   6.1e-98  327.9   0.0     2   416    83   522    82   523 0.83 AMP-binding enzyme
AMP-binding_C        PF13193.1     73 sp|P27550|ACSA_ECOLI -            652   1.3e-22   80.5   0.1   1   1   3.7e-26   2.8e-22   79.4   0.1     1    73   531   609   531   609 0.90 AMP-binding enzyme C-terminal domain
SSF                  PF00474.12   406 sp|P32705|ACTP_ECOLI -            549  1.3e-140  468.7  38.7   1   1  2.4e-144  1.8e-140  468.2  38.7     1   406    63   468    63   468 1.00 Sodium:solute symporter family
ADH_zinc_N           PF00107.21   130 sp|P26646|ACUI_ECOLI -            324   2.1e-17   62.9   0.1   1   1   2.6e-20   3.4e-17   62.1   0.1     1   128   158   282   158   284 0.91 Zinc-binding dehydrogenase
ADH_N                PF08240.7    109 sp|P26646|ACUI_ECOLI -            324   3.9e-06   26.5   0.1   1   2     2e-08   2.7e-05   23.8   0.0     2    62    28    86    27    94 0.89 Alcohol dehydrogenase GroES-like domain
AlaDh_PNT_C          PF01262.16   168 sp|P26646|ACUI_ECOLI -            324     5e-05   22.9   0.2   1   1   7.9e-08   0.00011   21.8   0.2    17    69   142   197   126   211 0.82 Alanine dehydrogenase/PNT, C-terminal domain
NAD_binding_10       PF13460.1    183 sp|P26646|ACUI_ECOLI -            324   0.00028   20.9   1.1   1   1   2.6e-07   0.00036   20.6   0.1     1    36   150   185   150   201 0.88 NADH(P)-binding
Epimerase            PF01370.16   236 sp|P26646|ACUI_ECOLI -            324    0.0011   18.3   0.0   1   1   1.4e-06    0.0019   17.6   0.0     1    37   150   186   150   219 0.85 NAD dependent epimerase/dehydratase family
adh_short            PF00106.20   167 sp|P26646|ACUI_ECOLI -            324    0.0061   16.4   0.1   1   1   6.6e-06    0.0089   15.9   0.1     3    75   150   232   148   272 0.75 short chain dehydrogenase
DapB_N               PF01113.15   124 sp|P26646|ACUI_ECOLI -            324    0.0061   16.4   0.1   2   2   0.00029      0.39   10.6   0.1     3    38   150   184   148   222 0.84 Dihydrodipicolinate reductase, N-terminus
ELFV_dehydrog        PF00208.16   244 sp|P26646|ACUI_ECOLI -            324     0.019   14.5   0.6   1   1   2.2e-05      0.03   13.8   0.6    26    64   142   180   124   183 0.71 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
NmrA                 PF05368.8    233 sp|P26646|ACUI_ECOLI -            324     0.066   12.4   0.0   1   1   7.1e-05     0.096   11.9   0.0     1    42   150   192   150   213 0.85 NmrA-like family
AAA_28               PF13521.1    163 sp|P26646|ACUI_ECOLI -            324     0.067   13.1   0.0   1   1     9e-05      0.12   12.3   0.0     2    41   150   193   149   218 0.72 AAA domain
THF_DHG_CYH_C        PF02882.14   161 sp|P26646|ACUI_ECOLI -            324     0.071   12.1   0.1   1   1   0.00013      0.18   10.8   0.1    19    66   130   177   119   191 0.85 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
Acylphosphatase      PF00708.13    91 sp|P0AB65|ACYP_ECOLI -             92   3.9e-28   97.3   0.0   1   1   2.8e-32   4.2e-28   97.2   0.0     1    91     1    92     1    92 0.95 Acylphosphatase
Ada_Zn_binding       PF02805.11    66 sp|P06134|ADA_ECOLI  -            354   7.5e-34  115.1   2.6   1   1   9.2e-37   1.9e-33  113.8   2.6     1    66    10    75    10    75 0.99 Metal binding domain of Ada
DNA_binding_1        PF01035.15    85 sp|P06134|ADA_ECOLI  -            354   2.8e-32  110.3   2.0   1   1   2.1e-35   4.5e-32  109.6   0.4     1    81   269   349   269   353 0.97 6-O-methylguanine DNA methyltransferase, DNA binding domain
Methyltransf_1N      PF02870.10    77 sp|P06134|ADA_ECOLI  -            354   7.6e-22   77.7   0.0   1   1   6.1e-25   1.3e-21   76.9   0.0     2    77   189   266   188   266 0.98 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
HTH_AraC             PF00165.18    42 sp|P06134|ADA_ECOLI  -            354   1.1e-17   63.1   0.0   1   2   1.6e-13   3.5e-10   39.3   0.0     7    42    98   133    95   133 0.94 Bacterial regulatory helix-turn-helix proteins, AraC family
HTH_AraC             PF00165.18    42 sp|P06134|ADA_ECOLI  -            354   1.1e-17   63.1   0.0   2   2   8.1e-08   0.00017   21.2   0.0     1    42   140   182   140   182 0.98 Bacterial regulatory helix-turn-helix proteins, AraC family
HTH_18               PF12833.2     81 sp|P06134|ADA_ECOLI  -            354   1.6e-15   56.9   0.2   1   1   7.5e-19   1.6e-15   56.9   0.2     1    80   105   182   105   183 0.97 Helix-turn-helix domain
HTH_15               PF12324.3     77 sp|P06134|ADA_ECOLI  -            354   0.00036   20.1   0.4   3   3   0.00014       0.3   10.7   0.0    30    57   279   308   267   317 0.78 Helix-turn-helix domain of alkylmercury lyase
Phage_Cox            PF10743.4     87 sp|P06134|ADA_ECOLI  -            354     0.038   14.0   0.0   1   1   3.2e-05     0.069   13.1   0.0    11    41   286   318   277   354 0.78 Regulatory phage protein cox
A_deaminase          PF00962.17   331 sp|P22333|ADD_ECOLI  -            333  1.5e-101  339.6   0.0   1   1  2.2e-105  1.6e-101  339.5   0.0     2   331     6   329     5   329 0.99 Adenosine/AMP deaminase
Amidohydro_3         PF07969.6    404 sp|P22333|ADD_ECOLI  -            333    0.0029   16.9   1.2   3   3   5.9e-06     0.044   13.0   0.2   218   336   170   281   143   308 0.73 Amidohydrolase family
Adenine_deam_C       PF13382.1    171 sp|P31441|ADEC_ECOLI -            588   1.8e-57  193.2   0.0   1   1   9.1e-61   2.7e-57  192.6   0.0    24   171   434   581   416   581 0.95 Adenine deaminase C-terminal domain
Amidohydro_1         PF01979.15   333 sp|P31441|ADEC_ECOLI -            588   3.6e-38  132.0   0.0   1   1   4.8e-41   1.4e-37  130.0   0.0     2   333    82   347    81   347 0.95 Amidohydrolase family
Amidohydro_5         PF13594.1     68 sp|P31441|ADEC_ECOLI -            588   2.9e-12   46.2   0.2   1   1   3.7e-15   1.1e-11   44.3   0.2     1    68    52   115    52   115 0.84 Amidohydrolase
Amidohydro_4         PF13147.1    304 sp|P31441|ADEC_ECOLI -            588     6e-11   42.8   0.2   1   1   6.2e-12   1.8e-08   34.7   0.1     1   304    76   344    76   344 0.80 Amidohydrolase
Amidohydro_3         PF07969.6    404 sp|P31441|ADEC_ECOLI -            588   1.4e-05   24.5   0.1   1   3   0.00022      0.66    9.1   0.0     2    15    82    95    81   144 0.82 Amidohydrolase family
Amidohydro_3         PF07969.6    404 sp|P31441|ADEC_ECOLI -            588   1.4e-05   24.5   0.1   2   3   2.4e-05     0.072   12.2   0.0   339   404   286   345   253   345 0.78 Amidohydrolase family
Xan_ur_permease      PF00860.15   389 sp|P31466|ADEP_ECOLI -            445   1.4e-42  145.6  51.4   1   2   9.3e-47   1.4e-42  145.6  51.4     3   387    31   404    29   406 0.92 Permease family
Xan_ur_permease      PF00860.15   389 sp|P31440|ADEQ_ECOLI -            444   3.9e-44  150.6  48.3   1   1   3.3e-48   4.9e-44  150.3  48.3     3   387    32   405    30   407 0.93 Permease family
Fe-ADH               PF00465.14   366 sp|P37686|ADH2_ECOLI -            383  2.9e-121  404.5   9.5   1   1  8.8e-125  3.3e-121  404.3   9.5     1   366     9   375     9   375 0.97 Iron-containing alcohol dehydrogenase
Fe-ADH_2             PF13685.1    250 sp|P37686|ADH2_ECOLI -            383   1.3e-19   70.4   5.3   1   1   1.5e-20   5.4e-17   61.9   5.3     2   246    14   278    13   280 0.91 Iron-containing alcohol dehydrogenase
Lamprin              PF06403.6    138 sp|P37686|ADH2_ECOLI -            383    0.0019   17.9   1.0   1   1     1e-06    0.0037   17.0   1.0    77   130   243   298   234   307 0.80 Lamprin
Inositol_P           PF00459.20   271 sp|P37686|ADH2_ECOLI -            383     0.015   14.5   0.2   1   2   9.4e-06     0.035   13.4   0.1   193   244    77   126    47   151 0.78 Inositol monophosphatase family
Fe-ADH               PF00465.14   366 sp|P0A9Q7|ADHE_ECOLI -            891  3.8e-112  374.5   0.3   1   1  1.6e-115  5.9e-112  373.9   0.3     1   361   457   849   457   854 0.93 Iron-containing alcohol dehydrogenase
Aldedh               PF00171.17   462 sp|P0A9Q7|ADHE_ECOLI -            891   1.5e-27   96.1   2.6   1   1   2.5e-30   9.1e-27   93.4   2.6    26   426     4   399     1   405 0.79 Aldehyde dehydrogenase family
Fe-ADH_2             PF13685.1    250 sp|P0A9Q7|ADHE_ECOLI -            891   1.3e-18   67.2   1.1   1   2   3.8e-12   1.4e-08   34.3   0.0    12    94   473   555   464   562 0.92 Iron-containing alcohol dehydrogenase
Fe-ADH_2             PF13685.1    250 sp|P0A9Q7|ADHE_ECOLI -            891   1.3e-18   67.2   1.1   2   2     1e-10   3.7e-07   29.6   1.3    98   247   588   739   580   741 0.93 Iron-containing alcohol dehydrogenase
HTH_AsnC-type        PF13404.1     42 sp|P0A9Q7|ADHE_ECOLI -            891      0.06   12.8   0.3   2   2   7.3e-05      0.27   10.8   0.0    16    32   771   787   765   791 0.89 AsnC-type helix-turn-helix domain
ADH_N                PF08240.7    109 sp|P39451|ADHP_ECOLI -            336   1.1e-30  105.5   8.0   1   1   6.2e-34   1.1e-30  105.5   8.0     2   109    25   131    24   131 0.97 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N           PF00107.21   130 sp|P39451|ADHP_ECOLI -            336   2.2e-29  101.6   1.7   1   1   2.1e-32   3.9e-29  100.8   1.7     1   129   172   298   172   299 0.98 Zinc-binding dehydrogenase
ADH_zinc_N_2         PF13602.1    127 sp|P39451|ADHP_ECOLI -            336   5.5e-08   33.7   1.6   1   1   6.3e-11   1.2e-07   32.7   1.6     1   127   205   332   205   332 0.77 Zinc-binding dehydrogenase
CoA_binding          PF02629.14    96 sp|P39451|ADHP_ECOLI -            336    0.0008   19.8   1.6   1   1   9.1e-07    0.0017   18.8   1.6     6    92   165   258   163   261 0.86 CoA binding domain
Methyltransf_18      PF12847.2    112 sp|P39451|ADHP_ECOLI -            336     0.003   18.1   0.1   1   1   3.4e-06    0.0063   17.0   0.1    11    97   172   277   171   290 0.63 Methyltransferase domain
Lysis_S              PF04971.7     68 sp|P39451|ADHP_ECOLI -            336      0.03   14.0   0.1   1   1     4e-05     0.074   12.7   0.1     9    54   141   185   135   190 0.81 Lysis protein S
Methyltransf_31      PF13847.1    152 sp|P39451|ADHP_ECOLI -            336     0.064   12.8   0.1   1   1   6.8e-05      0.13   11.8   0.1    13    50   172   208   171   229 0.84 Methyltransferase domain
TrkA_N               PF02254.13   116 sp|P39451|ADHP_ECOLI -            336     0.072   13.0   1.0   1   1   6.7e-05      0.12   12.3   1.0     1    67   165   233   165   255 0.72 TrkA-N domain
OKR_DC_1             PF01276.15   417 sp|P28629|ADIA_ECOLI -            755  8.8e-191  633.9   0.0   1   1  5.1e-194  1.1e-190  633.6   0.0     1   416   140   589   140   590 0.99 Orn/Lys/Arg decarboxylase, major domain
OKR_DC_1_C           PF03711.10   137 sp|P28629|ADIA_ECOLI -            755   3.6e-43  146.9   0.0   1   1   3.5e-46   7.4e-43  145.8   0.0     1   131   615   743   615   747 0.99 Orn/Lys/Arg decarboxylase, C-terminal domain
OKR_DC_1_N           PF03709.10   115 sp|P28629|ADIA_ECOLI -            755   2.9e-27   95.0   0.1   1   1   2.6e-30   5.4e-27   94.1   0.1     3   115    18   134    16   134 0.98 Orn/Lys/Arg decarboxylase, N-terminal domain
Pyridoxal_deC        PF00282.14   373 sp|P28629|ADIA_ECOLI -            755   0.00023   19.7   0.0   1   1   1.8e-07   0.00039   18.9   0.0   139   296   243   420   198   432 0.76 Pyridoxal-dependent decarboxylase conserved domain
Aminotran_1_2        PF00155.16   363 sp|P28629|ADIA_ECOLI -            755    0.0037   16.2   0.0   1   1   3.3e-06     0.007   15.3   0.0    55   198   216   358   203   389 0.76 Aminotransferase class I and II
Beta_elim_lyase      PF01212.16   290 sp|P28629|ADIA_ECOLI -            755     0.012   14.7   0.0   1   2   8.6e-05      0.18   10.8   0.0    35   149   211   335   203   354 0.78 Beta-eliminating lyase
Late_protein_L1      PF00500.13   500 sp|P28629|ADIA_ECOLI -            755     0.036   12.6   0.1   1   2   0.00014      0.29    9.6   0.1   239   363   346   469   326   475 0.80 L1 (late) protein
AA_permease_2        PF13520.1    426 sp|P60061|ADIC_ECOLI -            445   1.4e-52  178.6  55.6   1   1   2.4e-56   1.8e-52  178.3  55.6     2   401    11   403    10   428 0.89 Amino acid permease
AA_permease          PF00324.16   478 sp|P60061|ADIC_ECOLI -            445   1.7e-35  122.2  50.6   1   1   3.9e-39   2.9e-35  121.5  50.6     2   419    15   404    14   428 0.88 Amino acid permease
NUDIX                PF00293.23   135 sp|Q93K97|ADPP_ECOLI -            209   3.6e-14   52.5   0.2   1   1   3.6e-18   5.4e-14   51.9   0.2     4   127    59   187    56   198 0.86 NUDIX domain
MR_MLE_N             PF02746.11   117 sp|P51981|AEEP_ECOLI -            321   9.4e-33  112.6   0.0   1   1   6.1e-36   2.2e-32  111.4   0.0     1   117     1   112     1   112 0.99 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
MR_MLE               PF01188.16    67 sp|P51981|AEEP_ECOLI -            321   9.4e-12   45.2   3.0   1   2   5.9e-15   2.2e-11   44.1   1.9     3    67   162   225   160   225 0.85 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
MR_MLE_C             PF13378.1    111 sp|P51981|AEEP_ECOLI -            321   5.5e-10   39.2   0.0   1   1   3.8e-13   1.4e-09   37.8   0.0     1    82   225   304   225   321 0.79 Enolase C-terminal domain-like
MAAL_C               PF07476.6    249 sp|P51981|AEEP_ECOLI -            321     0.065   12.1   0.0   1   1   2.9e-05      0.11   11.4   0.0   138   205   218   284   208   296 0.82 Methylaspartate ammonia-lyase C-terminus
Abhydrolase_3        PF07859.8    211 sp|P23872|AES_ECOLI  -            319   7.8e-53  179.1   0.0   1   1   4.2e-56     1e-52  178.7   0.0     1   210    87   295    87   296 0.90 alpha/beta hydrolase fold
DUF2424              PF10340.4    374 sp|P23872|AES_ECOLI  -            319   6.1e-08   31.7   0.0   1   1   3.4e-11   8.4e-08   31.2   0.0   119   276    79   235    61   247 0.81 Protein of unknown function (DUF2424)
Abhydrolase_5        PF12695.2    145 sp|P23872|AES_ECOLI  -            319   5.4e-06   26.2   0.0   1   1   3.2e-09   7.8e-06   25.7   0.0     2   144    87   292    86   293 0.77 Alpha/beta hydrolase family
DLH                  PF01738.13   218 sp|P23872|AES_ECOLI  -            319   0.00014   21.2   0.0   1   1   1.1e-07   0.00026   20.3   0.0   147   206   253   307   227   319 0.80 Dienelactone hydrolase family
Peptidase_S9         PF00326.16   213 sp|P23872|AES_ECOLI  -            319   0.00025   20.3   0.0   1   1   1.6e-07    0.0004   19.6   0.0    46   196   136   301   133   319 0.76 Prolyl oligopeptidase family
Abhydrolase_2        PF02230.11   216 sp|P23872|AES_ECOLI  -            319     0.016   14.6   0.0   1   2   8.4e-05      0.21   11.0   0.0    98   128   150   180   122   207 0.71 Phospholipase/Carboxylesterase
Amidohydro_1         PF01979.15   333 sp|P42906|AGAA_ECOLI -            167   1.7e-09   37.8   0.1   1   1   6.2e-13   1.8e-09   37.6   0.1   221   333    59   150     8   150 0.78 Amidohydrolase family
Amidohydro_4         PF13147.1    304 sp|P42906|AGAA_ECOLI -            167   6.7e-08   32.8   0.2   1   1   4.5e-11   1.3e-07   31.9   0.1   252   304    94   147    81   147 0.87 Amidohydrolase
Amidohydro_3         PF07969.6    404 sp|P42906|AGAA_ECOLI -            167   5.1e-05   22.6   0.1   1   1     2e-08     6e-05   22.4   0.1   365   403   100   147    17   148 0.84 Amidohydrolase family
Lactamase_B          PF00753.22   194 sp|P42906|AGAA_ECOLI -            167     0.052   13.2   0.1   1   1   2.2e-05     0.065   12.8   0.1    99   166    13    90     4   131 0.76 Metallo-beta-lactamase superfamily
Glucosamine_iso      PF01182.15   199 sp|P42912|AGAI_ECOLI -            251   3.6e-19   69.2   0.0   1   1   6.5e-23   4.8e-19   68.8   0.0     4   198    30   226    28   227 0.81 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
Glyco_hydro_4C       PF11975.3    232 sp|P06720|AGAL_ECOLI -            451   1.8e-86  289.6   0.0   1   1     5e-90   2.5e-86  289.2   0.0     2   232   193   421   192   421 0.99 Family 4 glycosyl hydrolase C-terminal domain
Glyco_hydro_4        PF02056.11   183 sp|P06720|AGAL_ECOLI -            451   8.2e-80  266.4   0.1   1   1   2.2e-83   1.1e-79  266.0   0.1     1   182     6   188     6   189 0.99 Family 4 glycosyl hydrolase
SIS                  PF01380.17   131 sp|P42907|AGAS_ECOLI -            384     5e-53  178.2   0.0   1   2   3.9e-34   2.9e-30  104.5   0.0     2   130    49   188    48   189 0.98 SIS domain
SIS                  PF01380.17   131 sp|P42907|AGAS_ECOLI -            384     5e-53  178.2   0.0   2   2   4.7e-24   3.5e-20   71.9   0.0     3   131   222   357   220   357 0.94 SIS domain
PDH                  PF02153.12   258 sp|P42907|AGAS_ECOLI -            384     0.023   13.5   0.0   1   1     5e-06     0.037   12.9   0.0   138   181   143   186    99   201 0.82 Prephenate dehydrogenase
His_Phos_2           PF00328.17   347 sp|P19926|AGP_ECOLI  -            413   7.9e-39  133.9   0.0   1   1   6.4e-43   9.5e-39  133.6   0.0     1   344    30   359    30   364 0.84 Histidine phosphatase superfamily (branch 2)
AhpC-TSA             PF00578.16   124 sp|P0AE08|AHPC_ECOLI -            187   1.7e-33  114.9   0.1   1   1   5.8e-37   2.1e-33  114.6   0.1     4   123     7   133     4   134 0.94 AhpC/TSA family
Redoxin              PF08534.5    146 sp|P0AE08|AHPC_ECOLI -            187   2.4e-13   49.8   0.0   1   1   7.8e-17   2.9e-13   49.6   0.0    15   141    18   147     4   152 0.84 Redoxin
1-cysPrx_C           PF10417.4     40 sp|P0AE08|AHPC_ECOLI -            187   1.8e-06   27.4   0.1   1   1   8.7e-10   3.2e-06   26.6   0.1     1    31   154   182   154   186 0.88 C-terminal domain of 1-Cys peroxiredoxin
SCO1-SenC            PF02630.9    174 sp|P0AE08|AHPC_ECOLI -            187     0.051   13.2   0.0   1   2   3.7e-05      0.14   11.8   0.0    33    93     9    72     2    98 0.83 SCO1/SenC
Pyr_redox_2          PF07992.9    201 sp|P35340|AHPF_ECOLI -            521   1.4e-32  113.2   0.0   1   2   6.1e-34   4.5e-31  108.3   0.0     1   200   214   493   214   494 0.91 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox            PF00070.22    80 sp|P35340|AHPF_ECOLI -            521   1.2e-14   54.4   6.4   2   2     3e-17   2.2e-14   53.5   0.4     1    75   357   427   357   432 0.93 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P35340|AHPF_ECOLI -            521     5e-11   43.0   1.4   2   2   4.1e-12     3e-09   37.2   0.7    16   196   207   384   204   390 0.78 Pyridine nucleotide-disulphide oxidoreductase
GIDA                 PF01134.17   392 sp|P35340|AHPF_ECOLI -            521   4.9e-10   38.8   8.6   1   4   6.8e-07    0.0005   19.0   1.0     1    29   214   247   214   285 0.79 Glucose inhibited division protein A
GIDA                 PF01134.17   392 sp|P35340|AHPF_ECOLI -            521   4.9e-10   38.8   8.6   3   4   7.2e-06    0.0054   15.6   0.0     2    31   358   391   357   416 0.82 Glucose inhibited division protein A
Thioredoxin_3        PF13192.1     76 sp|P35340|AHPF_ECOLI -            521   2.5e-08   33.5   0.0   1   1     1e-10   7.6e-08   32.0   0.0     4    74   122   195   119   197 0.82 Thioredoxin domain
FAD_binding_2        PF00890.19   417 sp|P35340|AHPF_ECOLI -            521   9.5e-07   27.9  15.9   1   4   8.1e-06     0.006   15.4   1.7     1    27   214   240   214   249 0.91 FAD binding domain
FAD_binding_2        PF00890.19   417 sp|P35340|AHPF_ECOLI -            521   9.5e-07   27.9  15.9   2   4    0.0007      0.52    9.1   0.0   137   227   263   350   242   354 0.84 FAD binding domain
FAD_oxidored         PF12831.2    428 sp|P35340|AHPF_ECOLI -            521   3.4e-05   23.1  12.0   1   3     1e-07   7.6e-05   21.9   1.2     1    30   214   243   214   250 0.90 FAD dependent oxidoreductase
HI0933_like          PF03486.9    409 sp|P35340|AHPF_ECOLI -            521   4.8e-05   22.0   8.1   1   3   0.00035      0.26    9.7   0.6     1    29   213   241   213   250 0.89 HI0933-like protein
HI0933_like          PF03486.9    409 sp|P35340|AHPF_ECOLI -            521   4.8e-05   22.0   8.1   3   3   0.00015      0.11   10.9   0.3     2    33   357   388   356   393 0.91 HI0933-like protein
Thi4                 PF01946.12   230 sp|P35340|AHPF_ECOLI -            521   0.00014   21.0   3.1   1   2   9.8e-07   0.00073   18.7   0.3     6    87   201   281   198   323 0.76 Thi4 family
Glutaredoxin         PF00462.19    60 sp|P35340|AHPF_ECOLI -            521   0.00028   20.7   5.8   2   3   4.9e-06    0.0037   17.2   0.0     3    58   124   179   122   181 0.86 Glutaredoxin
FAD_binding_3        PF01494.14   356 sp|P35340|AHPF_ECOLI -            521   0.00037   19.6   3.4   1   2   6.3e-06    0.0046   16.0   0.5     2    28   213   239   212   247 0.91 FAD binding domain
K_oxygenase          PF13434.1    341 sp|P35340|AHPF_ECOLI -            521   0.00087   18.3   0.3   2   2   1.3e-05    0.0099   14.8   0.0   142   215   309   380   287   398 0.70 L-lysine 6-monooxygenase (NADPH-requiring)
NAD_binding_8        PF13450.1     68 sp|P35340|AHPF_ECOLI -            521   0.00093   19.1   5.5   1   3     3e-05     0.022   14.7   0.2     1    37   217   251   217   262 0.86 NAD(P)-binding Rossmann-like domain
DAO                  PF01266.19   358 sp|P35340|AHPF_ECOLI -            521     0.001   18.0  15.0   1   4    0.0001     0.077   11.8   0.7     1    27   214   240   214   248 0.91 FAD dependent oxidoreductase
FMO-like             PF00743.14   532 sp|P35340|AHPF_ECOLI -            521     0.017   13.3   0.0   1   1   3.8e-05     0.028   12.6   0.0   160   211   332   383   316   392 0.80 Flavin-binding monooxygenase-like
Thioredoxin_4        PF13462.1    163 sp|P35340|AHPF_ECOLI -            521     0.065   13.2   0.4   1   1   0.00045      0.33   10.9   0.0   125   162   158   196   143   197 0.88 Thioredoxin
NAD_binding_7        PF13241.1    103 sp|P35340|AHPF_ECOLI -            521       0.1   12.8   2.8   2   2   0.00059      0.44   10.8   0.1     5    49   353   403   352   463 0.72 Putative NAD(P)-binding
ADH_N                PF08240.7    109 sp|P27250|AHR_ECOLI  -            339   2.1e-27   95.0   0.9   1   1   3.8e-30   3.5e-27   94.3   0.9     1   109    28   138    28   138 0.96 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N           PF00107.21   130 sp|P27250|AHR_ECOLI  -            339   1.4e-22   79.6   0.0   1   1   2.3e-25   2.2e-22   79.0   0.0     1   129   179   301   179   302 0.98 Zinc-binding dehydrogenase
ADH_zinc_N_2         PF13602.1    127 sp|P27250|AHR_ECOLI  -            339   4.5e-08   34.0   0.0   1   1   8.3e-11   7.7e-08   33.2   0.0     1   127   211   335   211   335 0.73 Zinc-binding dehydrogenase
2-Hacid_dh_C         PF02826.14   178 sp|P27250|AHR_ECOLI  -            339   4.2e-06   26.0   0.0   1   1   7.3e-09   6.8e-06   25.3   0.0    34    80   167   213   157   248 0.73 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AlaDh_PNT_C          PF01262.16   168 sp|P27250|AHR_ECOLI  -            339   1.7e-05   24.4   0.0   1   1   3.1e-08   2.9e-05   23.7   0.0    21    74   170   223   161   244 0.85 Alanine dehydrogenase/PNT, C-terminal domain
NAD_binding_2        PF03446.10   163 sp|P27250|AHR_ECOLI  -            339   0.00044   20.1   0.1   2   2   3.4e-06    0.0031   17.3   0.0     2    64   170   238   169   250 0.75 NAD binding domain of 6-phosphogluconate dehydrogenase
Shikimate_DH         PF01488.15   135 sp|P27250|AHR_ECOLI  -            339    0.0011   19.0   0.0   1   1   2.1e-06     0.002   18.2   0.0    12    86   169   242   162   263 0.92 Shikimate / quinate 5-dehydrogenase
Oxidored_nitro       PF00148.14   398 sp|P27250|AHR_ECOLI  -            339     0.011   14.4   0.0   1   1   1.6e-05     0.015   13.9   0.0   266   346   164   236   157   245 0.81 Nitrogenase component 1 type Oxidoreductase
NAD_binding_10       PF13460.1    183 sp|P27250|AHR_ECOLI  -            339     0.012   15.6   0.1   1   1   1.9e-05     0.018   15.0   0.1     2    69   173   240   172   289 0.87 NADH(P)-binding
ETF                  PF01012.16   164 sp|P27250|AHR_ECOLI  -            339     0.017   14.8   0.3   1   1   5.8e-05     0.053   13.2   0.0    24    75   184   229   182   239 0.80 Electron transfer flavoprotein domain
ThiF                 PF00899.16   136 sp|P27250|AHR_ECOLI  -            339     0.023   14.5   2.9   1   1   4.7e-05     0.043   13.6   2.4     2    27   169   194   168   201 0.93 ThiF family
ApbA                 PF02558.11   151 sp|P27250|AHR_ECOLI  -            339     0.034   13.5   0.1   1   1   6.3e-05     0.059   12.8   0.1     1    75   172   239   172   240 0.77 Ketopantoate reductase PanE/ApbA
3HCDH_N              PF02737.13   180 sp|P27250|AHR_ECOLI  -            339     0.076   12.6   0.0   1   1   0.00013      0.12   12.0   0.0     1    69   171   241   171   252 0.77 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
PDT                  PF00800.13   182 sp|P27250|AHR_ECOLI  -            339     0.084   12.4   0.0   1   1   0.00015      0.14   11.7   0.0    14    49   300   334   297   335 0.91 Prephenate dehydratase
Saccharop_dh         PF03435.13   386 sp|P27250|AHR_ECOLI  -            339     0.086   11.8   0.2   1   1   0.00013      0.12   11.3   0.2     1    74   172   238   172   244 0.86 Saccharopine dehydrogenase
TrkA_N               PF02254.13   116 sp|P27250|AHR_ECOLI  -            339      0.11   12.4   0.1   1   1   0.00023      0.21   11.5   0.1     3    67   174   236   172   242 0.80 TrkA-N domain
Acyl-CoA_dh_1        PF00441.19   150 sp|P33224|AIDB_ECOLI -            541   1.2e-32  113.0   0.9   1   2   1.9e-35   9.2e-32  110.2   0.4     1   148   285   438   285   440 0.97 Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_M        PF02770.14    52 sp|P33224|AIDB_ECOLI -            541   5.8e-14   51.3   0.0   1   1   2.2e-17   1.1e-13   50.4   0.0     1    51   181   231   181   233 0.96 Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_2        PF08028.6    134 sp|P33224|AIDB_ECOLI -            541   2.2e-08   34.4   0.2   1   1   1.3e-11   6.2e-08   32.9   0.0    10   123   309   418   303   427 0.86 Acyl-CoA dehydrogenase, C-terminal domain
His_Phos_1           PF00300.17   158 sp|P45565|AIS_ECOLI  -            200   1.7e-10   41.2   0.0   1   2   3.1e-11   1.5e-07   31.6   0.0     2    80    56   130    55   138 0.79 Histidine phosphatase superfamily (branch 1)
His_Phos_2           PF00328.17   347 sp|P45565|AIS_ECOLI  -            200     0.016   14.5   0.6   2   2   3.2e-05      0.16   11.2   0.0    63   136    79   135    68   172 0.72 Histidine phosphatase superfamily (branch 2)
DUF2525              PF10733.4     58 sp|P45565|AIS_ECOLI  -            200     0.033   14.0   0.0   1   1   1.2e-05     0.057   13.2   0.0    20    52    69   102    62   108 0.79 Protein of unknown function (DUF2525)
Homoserine_dh        PF00742.14   179 sp|P00561|AK1H_ECOLI -            820   7.4e-52  175.6   0.0   1   1   6.8e-55     2e-51  174.1   0.0     1   179   614   811   614   811 0.98 Homoserine dehydrogenase
AA_kinase            PF00696.23   242 sp|P00561|AK1H_ECOLI -            820     3e-45  154.6   0.5   1   2   1.8e-47   5.4e-44  150.5   0.1     3   242     2   284     1   284 0.82 Amino acid kinase family
NAD_binding_3        PF03447.11   117 sp|P00561|AK1H_ECOLI -            820   2.8e-32  111.5   0.0   1   1   2.9e-35   8.6e-32  109.9   0.0     1   116   472   605   472   606 0.97 Homoserine dehydrogenase, NAD binding domain
ACT_7                PF13840.1     65 sp|P00561|AK1H_ECOLI -            820   2.3e-20   71.8   1.4   1   2   1.4e-11   4.2e-08   32.5   0.0     5    63   314   374   312   376 0.91 ACT domain
ACT_7                PF13840.1     65 sp|P00561|AK1H_ECOLI -            820   2.3e-20   71.8   1.4   2   2   4.2e-13   1.3e-09   37.4   0.4     3    62   393   454   391   457 0.93 ACT domain
ACT                  PF01842.20    66 sp|P00561|AK1H_ECOLI -            820   4.6e-17   61.1   0.3   1   2   4.9e-10   1.5e-06   27.5   0.0     6    63   324   376   320   379 0.86 ACT domain
ACT                  PF01842.20    66 sp|P00561|AK1H_ECOLI -            820   4.6e-17   61.1   0.3   2   2     8e-11   2.4e-07   30.1   0.6     2    53   401   447   400   457 0.79 ACT domain
Homoserine_dh        PF00742.14   179 sp|P00562|AK2H_ECOLI -            810   6.5e-51  172.5   0.0   1   1   2.7e-54   9.9e-51  171.9   0.0     1   178   608   803   608   804 0.99 Homoserine dehydrogenase
AA_kinase            PF00696.23   242 sp|P00562|AK2H_ECOLI -            810   1.2e-42  146.1   0.0   1   1   7.2e-46   2.7e-42  145.0   0.0     2   239    12   284    11   287 0.89 Amino acid kinase family
NAD_binding_3        PF03447.11   117 sp|P00562|AK2H_ECOLI -            810   3.8e-24   85.3   0.0   1   1   2.5e-27   9.1e-24   84.1   0.0     1   116   465   599   465   600 0.98 Homoserine dehydrogenase, NAD binding domain
HTH_11               PF08279.7     55 sp|P00562|AK2H_ECOLI -            810     0.042   13.5   0.4   1   1   8.9e-05      0.33   10.6   0.0    12    37   208   233   203   235 0.86 HTH domain
AA_kinase            PF00696.23   242 sp|P08660|AK3_ECOLI  -            449   8.3e-48  163.0   0.1   1   1   2.5e-51   1.2e-47  162.4   0.1     2   241     4   277     3   278 0.81 Amino acid kinase family
ACT                  PF01842.20    66 sp|P08660|AK3_ECOLI  -            449     7e-08   31.7   0.0   1   2   2.6e-09   1.3e-05   24.5   0.1    11    42   322   355   316   379 0.74 ACT domain
ACT_7                PF13840.1     65 sp|P08660|AK3_ECOLI  -            449   3.5e-07   29.6   0.1   2   3   2.8e-05      0.14   11.7   0.0     7    43   309   345   304   351 0.81 ACT domain
ACT_7                PF13840.1     65 sp|P08660|AK3_ECOLI  -            449   3.5e-07   29.6   0.1   3   3   3.8e-06     0.019   14.4   0.0     1    65   381   445   381   445 0.92 ACT domain
Aminotran_1_2        PF00155.16   363 sp|P0A959|ALAA_ECOLI -            405   6.6e-47  160.2   0.0   1   1   2.7e-50   7.9e-47  159.9   0.0    30   353    58   387    33   391 0.88 Aminotransferase class I and II
DegT_DnrJ_EryC1      PF01041.12   363 sp|P0A959|ALAA_ECOLI -            405   3.1e-06   26.4   0.0   1   1   1.6e-09   4.8e-06   25.8   0.0    47   146   101   207    96   208 0.73 DegT/DnrJ/EryC1/StrS aminotransferase family
Aminotran_5          PF00266.14   371 sp|P0A959|ALAA_ECOLI -            405   0.00022   20.0   0.0   1   2   1.8e-07   0.00055   18.7   0.0    75   175   106   207    77   209 0.85 Aminotransferase class-V
Beta_elim_lyase      PF01212.16   290 sp|P0A959|ALAA_ECOLI -            405   0.00049   19.3   0.0   1   1   2.5e-07   0.00073   18.7   0.0   105   164   155   207   110   208 0.84 Beta-eliminating lyase
Cys_Met_Meta_PP      PF01053.15   386 sp|P0A959|ALAA_ECOLI -            405      0.09   11.0   0.0   1   1   4.5e-05      0.13   10.4   0.0    84   178   109   208    98   214 0.73 Cys/Met metabolism PLP-dependent enzyme
Aminotran_1_2        PF00155.16   363 sp|P77434|ALAC_ECOLI -            412   1.8e-60  204.8   0.0   1   1   5.6e-64   2.1e-60  204.6   0.0     2   348    37   376    36   390 0.92 Aminotransferase class I and II
Beta_elim_lyase      PF01212.16   290 sp|P77434|ALAC_ECOLI -            412     0.011   14.8   0.0   1   1   3.8e-06     0.014   14.5   0.0    86   166   139   212    99   333 0.91 Beta-eliminating lyase
Alliinase_C          PF04864.8    363 sp|P77434|ALAC_ECOLI -            412      0.03   12.9   0.0   1   2   0.00016      0.59    8.7   0.0   159   222   201   271   165   315 0.73 Allinase
Cys_Met_Meta_PP      PF01053.15   386 sp|P77434|ALAC_ECOLI -            412     0.077   11.2   0.0   1   1   2.9e-05      0.11   10.8   0.0    86   179   114   212    96   218 0.69 Cys/Met metabolism PLP-dependent enzyme
DUF1144              PF06610.8    143 sp|P64550|ALAE_ECOLI -            149   4.4e-71  237.2   7.6   1   1   1.3e-74   4.9e-71  237.0   7.6     4   143     3   142     1   142 0.98 Protein of unknown function (DUF1144)
ATPase_gene1         PF09527.5     55 sp|P64550|ALAE_ECOLI -            149    0.0018   18.0   1.2   2   2   1.3e-06    0.0049   16.6   0.3     3    25   111   133   109   135 0.90 Putative F0F1-ATPase subunit (ATPase_gene1)
Aldedh               PF00171.17   462 sp|P25553|ALDA_ECOLI -            479  2.5e-164  547.0   1.1   1   1  5.6e-168  2.8e-164  546.8   1.1     8   462    22   475    15   475 0.98 Aldehyde dehydrogenase family
LuxC                 PF05893.9    400 sp|P25553|ALDA_ECOLI -            479   0.00013   20.7   0.0   1   1   5.3e-08   0.00026   19.8   0.0    88   285   142   335   134   356 0.81 Acyl-CoA reductase (LuxC)
DUF1487              PF07368.6    215 sp|P25553|ALDA_ECOLI -            479      0.12   11.6   0.0   1   1   3.6e-05      0.18   11.0   0.0     9    60   259   312   256   443 0.83 Protein of unknown function (DUF1487)
Aldedh               PF00171.17   462 sp|P37685|ALDB_ECOLI -            512  8.4e-163  541.9   0.0   1   1  6.4e-167  9.5e-163  541.8   0.0     1   460    33   498    33   500 0.96 Aldehyde dehydrogenase family
DeoC                 PF01791.4    236 sp|P0A991|ALF1_ECOLI -            350   5.9e-67  225.4   0.0   1   1   1.4e-70   6.9e-67  225.1   0.0     2   236    69   326    68   326 0.98 DeoC/LacD family aldolase
DUF4157              PF13699.1     79 sp|P0A991|ALF1_ECOLI -            350     0.019   15.1   0.8   1   2   0.00011      0.53   10.4   0.0    31    69   152   192   138   195 0.76 Domain of unknown function (DUF4157)
DUF3067              PF11267.3     99 sp|P0A991|ALF1_ECOLI -            350      0.15   12.1   0.0   1   1   9.9e-05      0.49   10.5   0.0    28    76   194   244   183   248 0.85 Protein of unknown function (DUF3067)
F_bP_aldolase        PF01116.15   287 sp|P0AB71|ALF_ECOLI  -            359   9.6e-98  326.8   0.0   1   1  1.4e-101   1.1e-97  326.6   0.0     2   284    15   356    14   359 0.95 Fructose-bisphosphate aldolase class-II
MR_MLE_C             PF13378.1    111 sp|P0AB71|ALF_ECOLI  -            359     0.028   14.3   0.8   1   1   1.1e-05     0.078   12.9   0.6    27    53    83   109    63   117 0.83 Enolase C-terminal domain-like
2OG-FeII_Oxy_2       PF13532.1    194 sp|P05050|ALKB_ECOLI -            216   2.3e-58  197.2   0.0   1   1   1.7e-62   2.6e-58  197.0   0.0     2   194    19   210    18   210 0.97 2OG-Fe(II) oxygenase superfamily
Aldolase             PF01081.14   196 sp|P0A955|ALKH_ECOLI -            213   3.7e-95  316.7   0.8   1   1   8.4e-99   4.2e-95  316.5   0.8     2   196     9   203     8   203 0.99 KDPG and KHG aldolase
IMPDH                PF00478.20   352 sp|P0A955|ALKH_ECOLI -            213     0.031   13.1   0.2   1   1   8.9e-06     0.044   12.6   0.2   114   172    34    89    13    95 0.82 IMP dehydrogenase / GMP reductase domain
HMGL-like            PF00682.14   237 sp|P0A955|ALKH_ECOLI -            213     0.039   13.6   0.1   1   1   1.2e-05     0.059   13.0   0.1    13    60    26    71    21    94 0.82 HMGL-like
Ureidogly_hydro      PF04115.7    165 sp|P77731|ALLA_ECOLI -            160   1.2e-51  174.3   0.0   1   1   1.9e-55   1.4e-51  174.1   0.0     3   159     2   153     1   158 0.95 Ureidoglycolate hydrolase
P53_TAD              PF08563.6     25 sp|P77731|ALLA_ECOLI -            160      0.13   11.3   0.5   1   2   1.8e-05      0.13   11.3   0.5     8    16     6    14     6    14 0.94 P53 transactivation motif
Amidohydro_4         PF13147.1    304 sp|P77671|ALLB_ECOLI -            453   1.4e-29  104.0   0.1   1   1   2.4e-32   3.6e-29  102.6   0.1     1   304    45   389    45   389 0.86 Amidohydrolase
Amidohydro_1         PF01979.15   333 sp|P77671|ALLB_ECOLI -            453   3.7e-19   69.5   0.0   1   1     4e-21   5.9e-18   65.6   0.0     1   332    50   391    50   392 0.76 Amidohydrolase family
Amidohydro_5         PF13594.1     68 sp|P77671|ALLB_ECOLI -            453   4.5e-17   61.6   0.9   1   1     7e-20     1e-16   60.4   0.9     1    68    23    88    23    88 0.84 Amidohydrolase
Amidohydro_3         PF07969.6    404 sp|P77671|ALLB_ECOLI -            453   1.4e-09   37.7   0.9   1   2   9.2e-05      0.14   11.3   0.2     1    40    50    86    50   112 0.80 Amidohydrolase family
Amidohydro_3         PF07969.6    404 sp|P77671|ALLB_ECOLI -            453   1.4e-09   37.7   0.9   2   2   5.1e-08   7.6e-05   22.0   0.0   162   403   171   389   153   390 0.62 Amidohydrolase family
DHOase               PF12890.2    142 sp|P77671|ALLB_ECOLI -            453     0.026   14.1   0.0   2   2    0.0001      0.15   11.6   0.0   114   141   220   247   169   248 0.75 Dihydro-orotase-like
Urease_alpha         PF00449.15   121 sp|P77671|ALLB_ECOLI -            453     0.056   13.5   1.3   1   1   7.6e-05      0.11   12.5   1.3    66   106     3    45     1    58 0.77 Urease alpha-subunit, N-terminal domain
FXa_inhibition       PF14670.1     36 sp|P77671|ALLB_ECOLI -            453     0.056   13.5   0.3   1   1    0.0001      0.16   12.1   0.3     7    33   235   277   231   279 0.84 Coagulation Factor Xa inhibitory site
zinc_ribbon_4        PF13717.1     36 sp|P77671|ALLB_ECOLI -            453     0.077   12.6   0.1   1   1   0.00012      0.17   11.5   0.1     3    29   262   288   261   289 0.96 zinc-ribbon domain
zinc_ribbon_5        PF13719.1     37 sp|P77671|ALLB_ECOLI -            453      0.08   12.5   0.1   1   1   0.00012      0.17   11.4   0.1     3    29   262   288   261   289 0.96 zinc-ribbon domain
Peptidase_M20        PF01546.23   189 sp|P77425|ALLC_ECOLI -            411     1e-26   93.6   0.0   1   1   2.6e-30   1.3e-26   93.3   0.0     3   187    79   404    77   406 0.96 Peptidase family M20/M25/M40
Peptidase_M42        PF05343.9    292 sp|P77425|ALLC_ECOLI -            411    0.0001   21.1   0.0   2   2   5.3e-08   0.00026   19.8   0.0   215   290   323   397   288   399 0.82 M42 glutamyl aminopeptidase
M20_dimer            PF07687.9    112 sp|P77425|ALLC_ECOLI -            411    0.0017   18.0   0.0   1   1   8.2e-07    0.0041   16.8   0.0     7   107   214   309   208   314 0.80 Peptidase dimerisation domain
Ldh_2                PF02615.9    335 sp|P77555|ALLD_ECOLI -            349  1.6e-140  467.6   0.1   1   1  1.2e-144  1.8e-140  467.4   0.1     1   334     1   333     1   334 0.99 Malate/L-lactate dehydrogenase
Cupin_2              PF07883.6     71 sp|P75713|ALLE_ECOLI -            261   1.5e-14   53.2   0.2   1   2   5.6e-08   0.00017   21.0   0.0    20    64    82   126    64   131 0.90 Cupin domain
Cupin_2              PF07883.6     71 sp|P75713|ALLE_ECOLI -            261   1.5e-14   53.2   0.2   2   2   8.2e-11   2.4e-07   30.1   0.1     3    49   184   230   182   234 0.88 Cupin domain
Cupin_3              PF05899.7     74 sp|P75713|ALLE_ECOLI -            261   7.1e-13   47.7   0.0   1   2   1.3e-13   3.9e-10   38.9   0.0     2    69    56   130    55   136 0.85 Protein of unknown function (DUF861)
AraC_binding         PF02311.14   136 sp|P75713|ALLE_ECOLI -            261   3.1e-05   23.6   0.4   1   2     4e-05      0.12   12.0   0.0    23    65    81   123    63   137 0.82 AraC-like ligand binding domain
AraC_binding         PF02311.14   136 sp|P75713|ALLE_ECOLI -            261   3.1e-05   23.6   0.4   2   2   0.00022      0.67    9.6   0.1    27    53   204   230   183   248 0.86 AraC-like ligand binding domain
CENP-C_C             PF11699.3     85 sp|P75713|ALLE_ECOLI -            261   9.4e-05   22.3   0.0   1   1   6.4e-08   0.00019   21.3   0.0    36    83    84   131    50   133 0.93 Mif2/CENP-C like
ARD                  PF03079.9    157 sp|P75713|ALLE_ECOLI -            261       0.2   11.5   0.1   1   1   0.00012      0.34   10.8   0.1    89   127   197   230   194   232 0.86 ARD/ARD' family
Transp_cyt_pur       PF02133.10   440 sp|P75712|ALLP_ECOLI -            484  2.5e-141  471.2  43.5   1   1  3.8e-145  2.8e-141  471.0  43.5     1   440    19   457    19   457 0.99 Permease for cytosine/purines, uracil, thiamine, allantoin
PKD_channel          PF08016.7    426 sp|P75712|ALLP_ECOLI -            484      0.77    8.1   9.4   2   2   1.9e-06     0.014   13.8   1.7   188   271   238   324   227   367 0.80 Polycystin cation channel
Ala_racemase_N       PF01168.15   218 sp|P0A6B4|ALR1_ECOLI -            359   4.7e-61  206.1   0.0   1   1   7.9e-65   5.9e-61  205.8   0.0     1   218     8   219     8   219 0.94 Alanine racemase, N-terminal domain
Ala_racemase_C       PF00842.16   129 sp|P0A6B4|ALR1_ECOLI -            359   8.7e-40  135.1   0.1   1   1   1.8e-43   1.3e-39  134.5   0.1     1   129   234   358   234   358 0.97 Alanine racemase, C-terminal domain
Ala_racemase_N       PF01168.15   218 sp|P29012|ALR2_ECOLI -            356   7.3e-58  195.6   0.1   1   1   1.3e-61   9.5e-58  195.3   0.1     2   218    10   217     9   217 0.95 Alanine racemase, N-terminal domain
Ala_racemase_C       PF00842.16   129 sp|P29012|ALR2_ECOLI -            356   2.5e-39  133.6   0.4   1   1   6.2e-43   4.6e-39  132.7   0.4     1   127   232   354   232   356 0.97 Alanine racemase, C-terminal domain
Peripla_BP_4         PF13407.1    257 sp|P39265|ALSB_ECOLI -            311   6.1e-59  199.4  11.6   1   1   2.1e-62     8e-59  199.0  11.6     2   254    28   288    27   291 0.96 Periplasmic binding protein domain
Peripla_BP_1         PF00532.16   279 sp|P39265|ALSB_ECOLI -            311   1.7e-19   70.1   0.7   1   1   5.5e-23     2e-19   69.8   0.7     5   207    28   241    24   288 0.80 Periplasmic binding proteins and sugar binding domain of LacI family
Peripla_BP_3         PF13377.1    160 sp|P39265|ALSB_ECOLI -            311   3.2e-12   46.7   0.0   1   1     2e-15   7.4e-12   45.5   0.0    12   141   159   290   157   305 0.87 Periplasmic binding protein-like domain
ACP_syn_III          PF08545.5     80 sp|P39265|ALSB_ECOLI -            311      0.01   15.4   0.6   1   1   9.5e-06     0.035   13.7   0.5     7    36   222   251   216   269 0.90 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
BPD_transp_2         PF02653.11   267 sp|P32720|ALSC_ECOLI -            326     1e-47  162.3  45.6   2   2   1.4e-51     1e-47  162.3  45.6     1   267    52   318    52   318 0.91 Branched-chain amino acid transport system / permease component
DUF3671              PF12420.3    104 sp|P32720|ALSC_ECOLI -            326     0.027   14.4   0.6   1   3   3.6e-06     0.027   14.4   0.6    32    74    12    65     5    92 0.70 Protein of unknown function
Ribul_P_3_epim       PF00834.14   201 sp|P32719|ALSE_ECOLI -            231   4.3e-61  205.5   0.0   1   1   3.5e-65   5.2e-61  205.2   0.0     1   195     2   196     2   203 0.96 Ribulose-phosphate 3 epimerase family
ROK                  PF00480.15   179 sp|P32718|ALSK_ECOLI -            309   8.7e-56  188.5   0.0   1   1   2.3e-59   1.2e-55  188.1   0.0     1   179    10   193    10   193 0.99 ROK family
BcrAD_BadFG          PF01869.15   271 sp|P32718|ALSK_ECOLI -            309     0.035   13.3   0.0   1   2   0.00015      0.72    9.0   0.0     2    54    10    59     9    82 0.88 BadF/BadG/BcrA/BcrD ATPase family
DUF1464              PF07318.7    343 sp|P32718|ALSK_ECOLI -            309      0.17   10.6   0.0   1   1   5.5e-05      0.27    9.9   0.0   240   314   219   297   206   299 0.79 Protein of unknown function (DUF1464)
ABC_tran             PF00005.22   137 sp|P32721|ALSA_ECOLI -            510   2.9e-54  183.0   0.1   1   2   5.7e-34   4.7e-31  107.9   0.2     1   137    21   174    21   174 0.96 ABC transporter
ABC_tran             PF00005.22   137 sp|P32721|ALSA_ECOLI -            510   2.9e-54  183.0   0.1   2   2   3.4e-23   2.8e-20   73.0   0.0     2   136   280   437   279   438 0.91 ABC transporter
AAA_21               PF13304.1    303 sp|P32721|ALSA_ECOLI -            510   1.8e-12   47.8   0.6   1   3   3.3e-07   0.00027   20.9   0.3     2    25    34    64    33   103 0.72 AAA domain
AAA_21               PF13304.1    303 sp|P32721|ALSA_ECOLI -            510   1.8e-12   47.8   0.6   2   3   0.00022      0.18   11.7   0.6   220   297   129   203    62   206 0.77 AAA domain
AAA_21               PF13304.1    303 sp|P32721|ALSA_ECOLI -            510   1.8e-12   47.8   0.6   3   3   0.00021      0.17   11.7   0.0   186   294   397   463   320   465 0.73 AAA domain
DUF258               PF03193.11   161 sp|P32721|ALSA_ECOLI -            510   1.3e-05   24.3   0.1   1   2   3.2e-05     0.026   13.6   0.1    35    66    31    62    12   111 0.80 Protein of unknown function, DUF258
AAA_10               PF12846.2    304 sp|P32721|ALSA_ECOLI -            510   0.00016   21.2   3.8   2   3   0.00033      0.27   10.6   0.1   219   266   162   208   122   219 0.85 AAA-like domain
AAA_29               PF13555.1     62 sp|P32721|ALSA_ECOLI -            510   0.00077   18.9   0.1   1   1   6.8e-06    0.0056   16.1   0.1    23    44    31    52    19    71 0.74 P-loop containing region of AAA domain
AAA_15               PF13175.1    415 sp|P32721|ALSA_ECOLI -            510    0.0024   17.0   0.6   1   2   0.00062      0.51    9.3   2.4    19    43    25    62    13   261 0.68 AAA ATPase domain
GSH-S_ATP            PF02955.11   174 sp|P32721|ALSA_ECOLI -            510    0.0033   16.5   0.1   1   1   9.3e-06    0.0077   15.3   0.1    42   141   193   289   159   302 0.85 Prokaryotic glutathione synthetase, ATP-grasp domain
AAA_23               PF13476.1    202 sp|P32721|ALSA_ECOLI -            510     0.025   14.8   0.1   1   1   8.2e-05     0.067   13.4   0.1    20    38    32    50    13    72 0.79 AAA domain
MMR_HSR1             PF01926.18   116 sp|P32721|ALSA_ECOLI -            510     0.034   14.1   0.7   1   2   0.00088      0.73    9.8   0.1     3    35    35    63    34   118 0.80 50S ribosome-binding GTPase
AAA_25               PF13481.1    194 sp|P32721|ALSA_ECOLI -            510      0.06   12.7   0.5   1   1   0.00025      0.21   10.9   0.1    30    53    28    51     5    55 0.83 AAA domain
TerC                 PF03741.11   184 sp|P42601|ALX_ECOLI  -            321   4.5e-57  192.4  13.4   2   3   6.1e-61   4.5e-57  192.4  13.4     1   182    80   282    80   284 0.97 Integral membrane protein TerC family
Amidase_3            PF01520.13   175 sp|P36548|AMIA_ECOLI -            289   2.9e-52  176.9   0.0   1   1   9.9e-56   7.3e-52  175.6   0.0     1   174    59   273    59   274 0.99 N-acetylmuramoyl-L-alanine amidase
TAT_signal           PF10518.4     26 sp|P36548|AMIA_ECOLI -            289    0.0083   16.0   1.1   1   1   1.1e-06    0.0083   16.0   1.1     3    23    12    32    11    34 0.89 TAT (twin-arginine translocation) pathway signal sequence
Amidase_3            PF01520.13   175 sp|P26365|AMIB_ECOLI -            445   4.3e-49  166.6   0.0   1   1   1.4e-52     7e-49  165.9   0.0     1   174   194   413   194   414 0.99 N-acetylmuramoyl-L-alanine amidase
AMIN                 PF11741.3     95 sp|P26365|AMIB_ECOLI -            445   0.00029   20.7   0.4   1   1   1.3e-07   0.00064   19.6   0.4    10    93    37   121    25   125 0.73 AMIN domain
STN                  PF07660.9     52 sp|P26365|AMIB_ECOLI -            445      0.11   12.1   0.1   1   1   5.6e-05      0.28   10.8   0.1    13    45    56    88    52    89 0.89 Secretin and TonB N terminus short domain
Amidase_2            PF01510.20   132 sp|P75820|AMID_ECOLI -            276   1.3e-26   93.1   0.0   1   1   6.1e-30   2.3e-26   92.4   0.0     6   131    41   179    35   180 0.92 N-acetylmuramoyl-L-alanine amidase
DUF4129              PF13559.1     72 sp|P75820|AMID_ECOLI -            276    0.0069   16.3   0.2   1   1   5.6e-06     0.021   14.8   0.2     6    34   218   245   215   272 0.75 Domain of unknown function (DUF4129)
LPAM_1               PF08139.7     25 sp|P75820|AMID_ECOLI -            276     0.035   14.3   1.8   1   1   1.6e-05     0.061   13.5   1.8     1    24     1    18     1    19 0.92 Prokaryotic membrane lipoprotein lipid attachment site
DUF4022              PF13214.1     83 sp|P75820|AMID_ECOLI -            276      0.11   12.6   0.0   1   1   8.4e-05      0.31   11.1   0.0    35    54   116   135   111   139 0.88 Protein of unknown function (DUF4022)
Amidase_3            PF01520.13   175 sp|P63883|AMIC_ECOLI -            417   1.3e-52  178.1   0.3   1   1   4.3e-56   2.1e-52  177.4   0.3     1   174   190   404   190   405 0.99 N-acetylmuramoyl-L-alanine amidase
AMIN                 PF11741.3     95 sp|P63883|AMIC_ECOLI -            417   4.9e-25   87.3   0.1   1   1   1.8e-28   8.9e-25   86.4   0.1     1    95    39   142    39   142 0.98 AMIN domain
TAT_signal           PF10518.4     26 sp|P63883|AMIC_ECOLI -            417      0.38   10.8   4.2   1   1   2.6e-05      0.13   12.3   0.9     2    18     8    24     7    26 0.90 TAT (twin-arginine translocation) pathway signal sequence
AMNp_N               PF10423.4    160 sp|P0AE12|AMN_ECOLI  -            484   8.9e-51  171.6   0.1   1   1   1.8e-54   1.3e-50  171.1   0.1     2   158    12   170    11   172 0.96 Bacterial AMP nucleoside phosphorylase N-terminus
PNP_UDP_1            PF01048.15   234 sp|P0AE12|AMN_ECOLI  -            484   4.7e-20   71.5   0.0   1   1   1.1e-23   7.9e-20   70.8   0.0    33   200   262   429   233   452 0.83 Phosphorylase superfamily
Cu_amine_oxid        PF01179.15   413 sp|P46883|AMO_ECOLI  -            757  7.5e-139  463.0   0.4   1   1  2.5e-142  9.2e-139  462.7   0.4     1   408   335   752   335   757 0.96 Copper amine oxidase, enzyme domain
Cu_amine_oxidN3      PF02728.11   101 sp|P46883|AMO_ECOLI  -            757   7.8e-29   99.7   0.2   2   2   1.2e-31   4.5e-28   97.2   0.0     2   101   216   317   215   317 0.98 Copper amine oxidase, N3 domain
Cu_amine_oxidN2      PF02727.11    86 sp|P46883|AMO_ECOLI  -            757   9.5e-27   92.9   1.6   1   2   5.1e-30   1.9e-26   91.9   0.3     1    85   124   209   124   210 0.96 Copper amine oxidase, N2 domain
Cu_amine_oxidN1      PF07833.6     93 sp|P46883|AMO_ECOLI  -            757   1.1e-12   48.1   0.0   1   1   7.7e-16   2.9e-12   46.7   0.0     5    79    36   110    33   121 0.94 Copper amine oxidase N-terminal domain
Peptidase_M17        PF00883.16   311 sp|P68767|AMPA_ECOLI -            503  5.5e-133  442.6   0.1   2   2  1.3e-136  9.4e-133  441.8   0.0     2   310   185   490   184   491 0.99 Cytosol aminopeptidase family, catalytic domain
Peptidase_M17_N      PF02789.12   126 sp|P68767|AMPA_ECOLI -            503     2e-31  108.3   0.0   1   1   7.5e-35   5.6e-31  106.9   0.0     1   126    19   147    19   147 0.98 Cytosol aminopeptidase family, N-terminal domain
Beta-lactamase       PF00144.19   330 sp|P00811|AMPC_ECOLI -            377     1e-89  300.8   1.1   1   1   8.1e-94   1.2e-89  300.6   1.1     3   329    30   376    28   377 0.98 Beta-lactamase
Amidase_2            PF01510.20   132 sp|P13016|AMPD_ECOLI -            183   9.4e-28   96.8   0.0   1   1   8.5e-32   1.3e-27   96.4   0.0     3   132    22   168    20   168 0.85 N-acetylmuramoyl-L-alanine amidase
MFS_1                PF07690.11   352 sp|P0AE16|AMPG_ECOLI -            491   2.7e-32  111.8  67.3   1   2   2.9e-35   2.2e-31  108.8  38.6     1   349    17   366    17   369 0.87 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P0AE16|AMPG_ECOLI -            491   2.7e-32  111.8  67.3   2   2   2.4e-07    0.0018   17.0  20.7    91   270   322   483   321   490 0.67 Major Facilitator Superfamily
Acatn                PF13000.2    544 sp|P0AE16|AMPG_ECOLI -            491   2.9e-10   39.3  11.1   1   2   1.2e-13   8.8e-10   37.7   3.2     4   171    16   160    14   170 0.76 Acetyl-coenzyme A transporter 1
Beta-lactamase       PF00144.19   330 sp|P0AD70|AMPH_ECOLI -            385   1.3e-64  218.3   1.5   1   1   2.2e-68   1.6e-64  217.9   1.5    11   314    45   357    32   370 0.87 Beta-lactamase
Peptidase_S11        PF00768.15   241 sp|P0AD70|AMPH_ECOLI -            385   0.00049   19.4   0.0   1   2   2.2e-07    0.0016   17.7   0.0    32    64    80   112    76   122 0.90 D-alanyl-D-alanine carboxypeptidase
DUF3458              PF11940.3    367 sp|P04825|AMPN_ECOLI -            870    2e-140  467.8   5.1   1   1  1.3e-143  3.2e-140  467.1   5.1     2   367   458   827   457   827 0.99 Domain of unknown function (DUF3458)
Peptidase_M1         PF01433.15   390 sp|P04825|AMPN_ECOLI -            870   1.3e-66  225.2   0.0   1   1   1.4e-69   3.4e-66  223.9   0.0   106   390   106   384    19   384 0.88 Peptidase family M1
Peptidase_MA_2       PF13485.1    128 sp|P04825|AMPN_ECOLI -            870   5.2e-18   65.3   0.1   1   1   6.5e-21   1.6e-17   63.7   0.1    18   128   282   407   262   407 0.80 Peptidase MA superfamily
Ovate                PF04844.8     60 sp|P04825|AMPN_ECOLI -            870      0.11   12.2   0.2   1   1   0.00014      0.36   10.6   0.0    19    43   560   584   554   586 0.85 Transcriptional repressor, ovate
Peptidase_M24        PF00557.19   207 sp|P15034|AMPP_ECOLI -            441   1.4e-62  210.9   0.2   1   1   3.9e-66   1.9e-62  210.5   0.2     3   207   185   414   183   414 0.91 Metallopeptidase family M24
AMP_N                PF05195.11   134 sp|P15034|AMPP_ECOLI -            441   3.2e-41  139.8   0.1   1   1   1.4e-44   6.8e-41  138.7   0.1     1   128     4   133     4   139 0.93 Aminopeptidase P, N-terminal domain
Ammonium_transp      PF00909.16   399 sp|P69681|AMTB_ECOLI -            428  2.1e-131  438.0  40.4   1   1  1.6e-135  2.4e-131  437.9  40.4     1   399    33   426    33   426 0.97 Ammonium Transporter Family
Alpha-amylase        PF00128.19   316 sp|P25718|AMY1_ECOLI -            676     2e-42  145.7   6.3   1   1   3.3e-46   4.9e-42  144.4   6.3     1   308   226   595   226   598 0.74 Alpha amylase, catalytic domain
Alpha-amylase        PF00128.19   316 sp|P26612|AMY2_ECOLI -            495   7.1e-26   91.3   0.3   1   1   4.8e-29   1.8e-25   90.0   0.3     8   304    26   367    21   376 0.69 Alpha amylase, catalytic domain
Glyco_hydro_70       PF02324.11   809 sp|P26612|AMY2_ECOLI -            495   1.7e-13   49.2   0.1   1   3   5.8e-10   2.2e-06   25.8   0.0   589   698    24   132    22   143 0.86 Glycosyl hydrolase family 70
Glyco_hydro_70       PF02324.11   809 sp|P26612|AMY2_ECOLI -            495   1.7e-13   49.2   0.1   3   3   1.9e-06    0.0071   14.1   0.0   349   405   349   412   330   460 0.88 Glycosyl hydrolase family 70
Alpha-amylase_C      PF02806.13    96 sp|P26612|AMY2_ECOLI -            495    0.0043   17.1   0.0   1   1   3.1e-06     0.012   15.7   0.0     8    93   416   489   414   492 0.79 Alpha amylase, C-terminal all-beta domain
DUF1939              PF09154.5     57 sp|P26612|AMY2_ECOLI -            495    0.0098   15.7   1.7   2   2   5.2e-06     0.019   14.8   0.2     6    56   439   489   434   490 0.88 Domain of unknown function (DUF1939)
UPF0075              PF03702.9    364 sp|P77570|ANMK_ECOLI -            369  1.9e-171  569.9   0.0   1   1  2.9e-175  2.2e-171  569.7   0.0     2   363     5   366     4   367 0.99 Uncharacterised protein family (UPF0075)
FGGY_C               PF02782.11   198 sp|P77570|ANMK_ECOLI -            369      0.05   13.2   0.1   1   1   1.3e-05       0.1   12.2   0.1   150   173   288   311   264   324 0.77 FGGY family of carbohydrate kinases, C-terminal domain
AA_permease          PF00324.16   478 sp|P77610|ANSP_ECOLI -            499  2.6e-123  411.8  47.0   1   1    6e-127    3e-123  411.7  47.0     2   477    35   476    34   477 0.97 Amino acid permease
AA_permease_2        PF13520.1    426 sp|P77610|ANSP_ECOLI -            499     2e-43  148.5  50.3   1   1   4.8e-47   2.4e-43  148.2  50.3     5   423    34   462    30   465 0.85 Amino acid permease
DUF4131              PF13567.1    176 sp|P77610|ANSP_ECOLI -            499      0.24   10.8   0.1   2   2   4.8e-05      0.24   10.8   0.1    11    74   423   484   413   494 0.65 Domain of unknown function (DUF4131)
Metallophos          PF00149.23   200 sp|P05637|APAH_ECOLI -            280   1.1e-20   73.9   0.0   1   1   1.7e-24   1.3e-20   73.7   0.0     4   170     4   133     1   231 0.86 Calcineurin-like phosphoesterase
Metallophos_2        PF12850.2    156 sp|P05637|APAH_ECOLI -            280     5e-06   26.4   0.0   1   1   9.8e-10   7.2e-06   25.9   0.0     1   106     1   137     1   145 0.76 Calcineurin-like phosphoesterase superfamily domain
ApbE                 PF02424.10   254 sp|P0AB85|APBE_ECOLI -            351   6.2e-80  268.1   0.0   1   1   1.2e-83     9e-80  267.6   0.0     4   254    72   327    69   327 0.97 ApbE family
Acid_phosphat_B      PF03767.9    230 sp|P0AE22|APHA_ECOLI -            237   4.1e-50  170.2   0.0   1   1   1.9e-53   4.7e-50  170.0   0.0     2   229    11   220    10   221 0.96 HAD superfamily, subfamily IIIB (Acid phosphatase)
Integrase_Zn         PF02022.14    40 sp|P0AE22|APHA_ECOLI -            237    0.0016   17.8   0.0   1   2   0.00014      0.34   10.3   0.0    17    30   110   123   109   125 0.89 Integrase Zinc binding domain
Hydrolase            PF00702.21   215 sp|P0AE22|APHA_ECOLI -            237    0.0047   17.3   0.0   1   1   4.4e-06     0.011   16.1   0.0   166   215   153   204   114   204 0.70 haloacid dehalogenase-like hydrolase
HAD                  PF12710.2    192 sp|P0AE22|APHA_ECOLI -            237    0.0052   16.9   0.0   1   1   3.1e-06    0.0078   16.4   0.0    94   192   119   201    66   201 0.77 haloacid dehalogenase-like hydrolase
Hydrolase_3          PF08282.7    254 sp|P0AE22|APHA_ECOLI -            237      0.02   14.5   0.2   1   2   5.2e-05      0.13   11.8   0.0     3    60    68   161    66   189 0.76 haloacid dehalogenase-like hydrolase
Antitoxin-MazE       PF04014.13    47 sp|P0AE22|APHA_ECOLI -            237     0.056   13.1   0.0   1   1   4.6e-05      0.11   12.1   0.0    10    30   113   136   112   142 0.90 Antidote-toxin recognition MazE
Cyto_ox_2            PF02322.10   328 sp|P26458|APPB_ECOLI -            378  5.7e-112  374.1  33.8   1   1  4.4e-116  6.5e-112  373.9  33.8     1   328     6   362     6   362 0.99 Cytochrome oxidase subunit II
Bac_Ubq_Cox          PF01654.12   436 sp|P26459|APPC_ECOLI -            514  9.3e-184  610.8  25.1   1   1  8.3e-188  1.2e-183  610.4  25.1     1   435     7   502     7   503 0.97 Bacterial Cytochrome Ubiquinol Oxidase
YbgT_YccB            PF08173.6     28 sp|P24244|APPX_ECOLI -             30   3.7e-12   45.8   4.6   1   1   2.6e-16   3.8e-12   45.7   4.6     1    27     1    27     1    28 0.97 Membrane bound YbgT-like protein
Pribosyltran         PF00156.22   125 sp|P69503|APT_ECOLI  -            183   3.7e-20   71.8   0.2   1   1   6.4e-24   4.7e-20   71.5   0.2     2   124    33   155    32   156 0.95 Phosphoribosyl transferase domain
UPRTase              PF14681.1    207 sp|P69503|APT_ECOLI  -            183    0.0013   18.0   0.0   1   1   2.2e-07    0.0016   17.6   0.0   120   157   118   155    85   171 0.79 Uracil phosphoribosyltransferase
MIP                  PF00230.15   227 sp|P60844|AQPZ_ECOLI -            231   4.6e-49  166.9  19.6   1   1   3.5e-53   5.3e-49  166.7  19.6     8   227     2   223     1   223 0.90 Major intrinsic protein
Arabinose_Isome      PF02610.10   359 sp|P08202|ARAA_ECOLI -            500  7.8e-186  617.2   0.4   1   1  1.2e-189  9.2e-186  616.9   0.4     1   359     1   359     1   359 1.00 L-arabinose isomerase
Arabinose_Iso_C      PF11762.3    115 sp|P08202|ARAA_ECOLI -            500   4.9e-49  164.7   0.0   1   1   1.3e-52   9.8e-49  163.7   0.0     1   115   362   476   362   476 0.99 L-arabinose isomerase C-terminal domain
FGGY_C               PF02782.11   198 sp|P08204|ARAB_ECOLI -            566   4.4e-35  121.1   0.5   1   1   1.4e-38   7.1e-35  120.4   0.5     4   198   292   501   289   501 0.89 FGGY family of carbohydrate kinases, C-terminal domain
FGGY_N               PF00370.16   245 sp|P08204|ARAB_ECOLI -            566     1e-09   38.0   0.0   1   2   3.9e-09   1.9e-05   24.0   0.0     2   136     4   161     3   193 0.73 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_N               PF00370.16   245 sp|P08204|ARAB_ECOLI -            566     1e-09   38.0   0.0   2   2     3e-05      0.15   11.3   0.0   213   245   249   281   230   281 0.91 FGGY family of carbohydrate kinases, N-terminal domain
XPC-binding          PF09280.6     59 sp|P08204|ARAB_ECOLI -            566     0.061   12.7   0.1   1   1   2.6e-05      0.13   11.7   0.1    28    54   353   379   349   384 0.90 XPC-binding domain
Aldolase_II          PF00596.16   184 sp|P08203|ARAD_ECOLI -            231   1.1e-47  162.0   0.4   1   1   8.9e-52   1.3e-47  161.7   0.4     2   182     8   196     7   198 0.90 Class II Aldolase and Adducin N-terminal domain
Peripla_BP_1         PF00532.16   279 sp|P02924|ARAF_ECOLI -            329   1.9e-96  322.5   0.0   1   1  5.8e-100   2.2e-96  322.3   0.0     2   278    26   319    25   320 0.99 Periplasmic binding proteins and sugar binding domain of LacI family
Peripla_BP_4         PF13407.1    257 sp|P02924|ARAF_ECOLI -            329   1.2e-21   77.2   1.6   1   1   4.1e-25   1.5e-21   76.8   1.6     2   252    29   293    28   297 0.86 Periplasmic binding protein domain
DUF1651              PF07864.6     75 sp|P02924|ARAF_ECOLI -            329     0.065   13.3   0.0   1   1   3.8e-05      0.14   12.2   0.0    27    68   114   154   105   160 0.86 Protein of unknown function (DUF1651)
Sugar_tr             PF00083.19   451 sp|P0AE24|ARAE_ECOLI -            472  6.6e-130  433.6  32.8   1   1  2.5e-133  7.5e-130  433.5  32.8     2   449    26   459    25   461 0.95 Sugar (and other) transporter
MFS_1                PF07690.11   352 sp|P0AE24|ARAE_ECOLI -            472   1.2e-39  136.0  56.1   1   2   4.8e-40   1.4e-36  125.9  33.1     2   322    30   375    29   390 0.79 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P0AE24|ARAE_ECOLI -            472   1.2e-39  136.0  56.1   2   2   4.1e-09   1.2e-05   24.1  14.9    30   186   291   458   289   469 0.72 Major Facilitator Superfamily
TRI12                PF06609.8    599 sp|P0AE24|ARAE_ECOLI -            472   1.1e-09   37.1   6.2   1   2   3.6e-13   1.1e-09   37.1   6.2    39   229    17   211     3   222 0.75 Fungal trichothecene efflux pump (TRI12)
MFS_2                PF13347.1    428 sp|P0AE24|ARAE_ECOLI -            472   9.5e-09   34.1  35.5   1   3   4.7e-08   0.00014   20.4  15.2   225   345    22   142     7   199 0.87 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P0AE24|ARAE_ECOLI -            472   9.5e-09   34.1  35.5   2   3   1.7e-06    0.0051   15.2  12.9   147   337   155   381   142   388 0.70 MFS/sugar transport protein
ABC_tran             PF00005.22   137 sp|P0AAF3|ARAG_ECOLI -            504   3.7e-53  179.5   0.0   1   2   1.3e-35   1.2e-32  113.1   0.0     1   137    23   172    23   172 0.94 ABC transporter
ABC_tran             PF00005.22   137 sp|P0AAF3|ARAG_ECOLI -            504   3.7e-53  179.5   0.0   2   2   1.4e-20   1.2e-17   64.4   0.0     4   136   275   427   273   428 0.91 ABC transporter
AAA_21               PF13304.1    303 sp|P0AAF3|ARAG_ECOLI -            504   3.4e-16   60.0   0.5   1   3   8.8e-07   0.00077   19.5   0.3     2    21    36    55    35    88 0.83 AAA domain
AAA_21               PF13304.1    303 sp|P0AAF3|ARAG_ECOLI -            504   3.4e-16   60.0   0.5   2   3     1e-07   8.9e-05   22.5   0.0   219   297   122   201    65   204 0.83 AAA domain
AAA_21               PF13304.1    303 sp|P0AAF3|ARAG_ECOLI -            504   3.4e-16   60.0   0.5   3   3   2.3e-05      0.02   14.8   0.0   220   296   383   456   338   457 0.82 AAA domain
AAA_15               PF13175.1    415 sp|P0AAF3|ARAG_ECOLI -            504   1.9e-06   27.2   0.0   1   2   3.4e-06     0.003   16.6   0.0    14    56    15    76     8   130 0.75 AAA ATPase domain
UPF0079              PF02367.12   123 sp|P0AAF3|ARAG_ECOLI -            504     6e-05   22.6   0.9   1   2   0.00092       0.8    9.3   0.0    11    39    29    57    21    66 0.83 Uncharacterised P-loop hydrolase UPF0079
UPF0079              PF02367.12   123 sp|P0AAF3|ARAG_ECOLI -            504     6e-05   22.6   0.9   2   2   0.00019      0.17   11.5   0.1    11    42   278   309   272   316 0.86 Uncharacterised P-loop hydrolase UPF0079
DUF258               PF03193.11   161 sp|P0AAF3|ARAG_ECOLI -            504   6.7e-05   22.1   1.0   1   2   6.9e-07    0.0006   19.0   0.0    31    67    28    65    16    86 0.82 Protein of unknown function, DUF258
AAA_10               PF12846.2    304 sp|P0AAF3|ARAG_ECOLI -            504    0.0003   20.3   2.1   1   3   0.00098      0.86    8.9   0.0     6    47    38    79    35    94 0.77 AAA-like domain
AAA_10               PF12846.2    304 sp|P0AAF3|ARAG_ECOLI -            504    0.0003   20.3   2.1   2   3   0.00077      0.67    9.3   0.1   206   273   148   213   133   230 0.80 AAA-like domain
SMC_N                PF02463.14   220 sp|P0AAF3|ARAG_ECOLI -            504   0.00044   19.5   0.0   1   1     5e-05     0.044   13.0   0.0    25   213    34   217    19   224 0.69 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P0AAF3|ARAG_ECOLI -            504    0.0011   18.4   0.4   1   1   4.2e-06    0.0037   16.7   0.0    22    40    32    50    22    56 0.85 P-loop containing region of AAA domain
AAA_25               PF13481.1    194 sp|P0AAF3|ARAG_ECOLI -            504    0.0011   18.4   0.0   1   1   2.9e-06    0.0025   17.2   0.0    11    92     9    82     3   125 0.70 AAA domain
AAA_23               PF13476.1    202 sp|P0AAF3|ARAG_ECOLI -            504     0.014   15.7   0.1   1   1   2.8e-05     0.024   14.9   0.1    13    37    24    51     8    56 0.76 AAA domain
Zeta_toxin           PF06414.7    201 sp|P0AAF3|ARAG_ECOLI -            504      0.12   11.4   0.5   1   1   0.00027      0.24   10.4   0.0    21    53    38    71    34    73 0.91 Zeta toxin
cobW                 PF02492.14   178 sp|P0AAF3|ARAG_ECOLI -            504      0.21   11.0   1.1   1   2   0.00088      0.76    9.1   0.0     2    43    35    75    34   111 0.80 CobW/HypB/UreG, nucleotide-binding domain
BPD_transp_2         PF02653.11   267 sp|P0AE26|ARAH_ECOLI -            328   5.4e-47  159.9  37.5   2   2   7.3e-51   5.4e-47  159.9  37.5     9   267    58   315    50   315 0.96 Branched-chain amino acid transport system / permease component
PDR_CDR              PF06422.7    103 sp|P0AE26|ARAH_ECOLI -            328      0.79    9.4   2.4   1   2   7.8e-05      0.58    9.8   0.3    43    76    16    49    12    61 0.84 CDR ABC transporter
MFS_1                PF07690.11   352 sp|P23910|ARAJ_ECOLI -            394     4e-36  124.4  50.9   1   2   8.2e-40     4e-36  124.4  50.9     1   337     8   328     8   332 0.88 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P23910|ARAJ_ECOLI -            394   3.5e-10   39.0  17.6   1   2   7.2e-14   3.5e-10   39.0  17.6    49   191    41   177    22   181 0.96 Sugar (and other) transporter
MFS_2                PF13347.1    428 sp|P23910|ARAJ_ECOLI -            394    0.0031   15.9  42.0   1   3   6.4e-06     0.032   12.6   9.8   267   373    45   146    11   151 0.82 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P23910|ARAJ_ECOLI -            394    0.0031   15.9  42.0   2   3   1.7e-05     0.083   11.2  21.5   149   332   132   307   125   319 0.71 MFS/sugar transport protein
AA_kinase            PF00696.23   242 sp|P37306|ARCC_ECOLI -            297   1.9e-23   83.3   0.0   1   1   3.1e-27   4.7e-23   81.9   0.0     1   240     2   277     2   279 0.76 Amino acid kinase family
AA_permease_2        PF13520.1    426 sp|P0AAE5|ARCD_ECOLI -            460   1.7e-79  267.3  39.9   1   1   1.4e-83     2e-79  267.1  39.9     1   420     5   441     5   449 0.91 Amino acid permease
AA_kinase            PF00696.23   242 sp|P77624|ARCM_ECOLI -            316   1.5e-27   96.7   0.3   1   1   1.2e-31   1.8e-27   96.4   0.3     2   241     4   296     3   297 0.91 Amino acid kinase family
AA_kinase            PF00696.23   242 sp|Q46807|ARCL_ECOLI -            310     9e-28   97.4   0.9   1   1   1.5e-31   1.1e-27   97.1   0.9     1   240     3   290     3   291 0.89 Amino acid kinase family
AlaDh_PNT_N          PF05222.10   136 sp|Q46807|ARCL_ECOLI -            310    0.0016   18.4   0.8   1   2   2.3e-06     0.017   15.0   0.0    13    50    25    62    20    75 0.90 Alanine dehydrogenase/PNT, N-terminal domain
DUF331               PF03889.8     39 sp|P36675|ARFA_ECOLI -             72   3.5e-21   74.1   0.6   1   1   3.1e-25   4.6e-21   73.8   0.6     1    37     9    45     9    47 0.97 Domain of unknown function
RF-1                 PF00472.15   114 sp|P40711|ARFB_ECOLI -            140   1.8e-29  101.8   0.6   1   1   2.8e-33   2.1e-29  101.6   0.6     4   114     4   132     1   138 0.91 RF-1 domain
AA_kinase            PF00696.23   242 sp|P0A6C5|ARGA_ECOLI -            443   1.2e-26   93.7   0.5   1   1   5.6e-30   1.7e-26   93.2   0.5     1   241    26   268    26   269 0.93 Amino acid kinase family
Acetyltransf_1       PF00583.19    83 sp|P0A6C5|ARGA_ECOLI -            443   4.9e-09   36.0   0.0   1   1   5.8e-12   1.7e-08   34.3   0.0     3    83   342   414   340   414 0.92 Acetyltransferase (GNAT) family
Acetyltransf_7       PF13508.1     79 sp|P0A6C5|ARGA_ECOLI -            443   1.2e-06   28.5   0.0   2   2   2.7e-09     8e-06   25.9   0.0     3    78   335   414   333   415 0.84 Acetyltransferase (GNAT) domain
Acetyltransf_10      PF13673.1    117 sp|P0A6C5|ARGA_ECOLI -            443   0.00021   21.3   0.1   2   2     4e-07    0.0012   18.9   0.0    36   117   327   413   309   413 0.81 Acetyltransferase (GNAT) domain
Acetyltransf_9       PF13527.1    127 sp|P0A6C5|ARGA_ECOLI -            443   0.00056   19.7   0.0   1   1   3.9e-07    0.0011   18.7   0.0     2   126   298   415   297   416 0.83 Acetyltransferase (GNAT) domain
AA_kinase            PF00696.23   242 sp|P0A6C8|ARGB_ECOLI -            258   4.7e-40  137.6   2.1   1   1   7.1e-44   5.3e-40  137.4   2.1     3   241     5   235     3   236 0.93 Amino acid kinase family
Smr                  PF01713.16    83 sp|P0A6C8|ARGB_ECOLI -            258     0.018   15.2   0.0   1   1   1.3e-05     0.095   12.9   0.0     7    37    15    45    13   100 0.86 Smr domain
Semialdhyde_dh       PF01118.19   121 sp|P11446|ARGC_ECOLI -            334   8.3e-33  113.2   0.0   1   1   7.3e-36   1.5e-32  112.3   0.0     3   121     5   146     3   146 0.97 Semialdehyde dehydrogenase, NAD binding domain
Semialdhyde_dhC      PF02774.13   184 sp|P11446|ARGC_ECOLI -            334   3.3e-20   72.7   0.0   1   1   2.3e-23   4.9e-20   72.1   0.0     1   184   163   311   163   311 0.95 Semialdehyde dehydrogenase, dimerisation domain
DapB_N               PF01113.15   124 sp|P11446|ARGC_ECOLI -            334    0.0012   18.7   0.0   1   1   1.1e-06    0.0023   17.8   0.0     4    91     5    96     2   100 0.79 Dihydrodipicolinate reductase, N-terminus
GFO_IDH_MocA         PF01408.17   120 sp|P11446|ARGC_ECOLI -            334    0.0014   19.1   0.0   1   1   1.6e-06    0.0033   17.9   0.0     2    90     3   100     2   101 0.71 Oxidoreductase family, NAD-binding Rossmann fold
NmrA                 PF05368.8    233 sp|P11446|ARGC_ECOLI -            334     0.036   13.3   0.0   1   1   2.6e-05     0.056   12.6   0.0     2    78     5    86     4    97 0.85 NmrA-like family
Epimerase            PF01370.16   236 sp|P11446|ARGC_ECOLI -            334       0.1   12.0   0.0   1   1   7.5e-05      0.16   11.3   0.0     2    74     5    81     4    95 0.68 NAD dependent epimerase/dehydratase family
DUF4459              PF14673.1    159 sp|P11446|ARGC_ECOLI -            334      0.14   11.8   0.0   1   1   0.00012      0.25   11.0   0.0    71   119   260   306   251   312 0.80 Domain of unknown function (DUF4459)
Aminotran_3          PF00202.16   339 sp|P18335|ARGD_ECOLI -            406  1.5e-125  418.6   0.0   1   1  4.7e-129  1.7e-125  418.3   0.0     3   338    29   347    27   348 0.99 Aminotransferase class-III
Aminotran_1_2        PF00155.16   363 sp|P18335|ARGD_ECOLI -            406   2.4e-06   26.7   0.0   1   1   1.1e-09   4.1e-06   25.9   0.0   104   306   155   338    75   373 0.81 Aminotransferase class I and II
Beta_elim_lyase      PF01212.16   290 sp|P18335|ARGD_ECOLI -            406     0.004   16.3   0.0   1   1     2e-06    0.0074   15.4   0.0    34   164    89   226    79   228 0.62 Beta-eliminating lyase
Aminotran_5          PF00266.14   371 sp|P18335|ARGD_ECOLI -            406    0.0067   15.2   0.3   1   1   1.5e-05     0.057   12.1   0.3    53   182    91   233    86   241 0.76 Aminotransferase class-V
Peptidase_M20        PF01546.23   189 sp|P23908|ARGE_ECOLI -            383   1.5e-37  128.9   0.0   1   1   9.9e-41   2.9e-37  128.0   0.0     1   187    76   377    76   379 0.96 Peptidase family M20/M25/M40
M20_dimer            PF07687.9    112 sp|P23908|ARGE_ECOLI -            383     7e-26   90.1   0.0   1   1     4e-29   1.2e-25   89.4   0.0     2   110   178   288   177   290 0.95 Peptidase dimerisation domain
Peptidase_M28        PF04389.12   179 sp|P23908|ARGE_ECOLI -            383    0.0043   16.8   0.0   1   2   5.2e-06     0.016   14.9   0.0     3    73    75   157    73   168 0.75 Peptidase family M28
Peptidase_M42        PF05343.9    292 sp|P23908|ARGE_ECOLI -            383     0.013   14.3   0.0   1   1   7.6e-06     0.023   13.4   0.0   140   186   118   166   103   194 0.83 M42 glutamyl aminopeptidase
SBP_bac_5            PF00496.17   374 sp|P23908|ARGE_ECOLI -            383      0.15   10.8   0.0   1   1   7.3e-05      0.22   10.3   0.0   304   334    29    62    11    99 0.75 Bacterial extracellular solute-binding proteins, family 5 Middle
ArgK                 PF03308.11   267 sp|P27254|ARGK_ECOLI -            331  1.4e-114  381.3   0.2   1   1  2.4e-117  1.6e-114  381.1   0.2     1   266    22   294    22   295 0.99 ArgK protein
CbiA                 PF01656.18   195 sp|P27254|ARGK_ECOLI -            331   2.2e-07   30.4   0.0   1   1   5.6e-10   3.8e-07   29.7   0.0     9   104    64   156    59   224 0.78 CobQ/CobB/MinD/ParA nucleotide binding domain
cobW                 PF02492.14   178 sp|P27254|ARGK_ECOLI -            331   4.3e-07   29.5   1.1   1   1   5.2e-09   3.5e-06   26.5   1.1     3   157    57   208    55   225 0.69 CobW/HypB/UreG, nucleotide-binding domain
ATP_bind_1           PF03029.12   238 sp|P27254|ARGK_ECOLI -            331    0.0012   18.4   0.0   1   1   4.2e-06    0.0028   17.2   0.0     1    35    59    93    59    97 0.95 Conserved hypothetical ATP binding protein
AAA_29               PF13555.1     62 sp|P27254|ARGK_ECOLI -            331    0.0012   18.2   0.1   1   1   4.2e-06    0.0029   17.1   0.1    28    51    59    82    51    89 0.87 P-loop containing region of AAA domain
AAA_30               PF13604.1    196 sp|P27254|ARGK_ECOLI -            331    0.0018   17.9   0.2   1   2     5e-05     0.034   13.7   0.0    21    54    57    90    38    95 0.87 AAA domain
MobB                 PF03205.9    140 sp|P27254|ARGK_ECOLI -            331    0.0021   17.7   0.1   1   1   1.9e-05     0.013   15.2   0.1     2    98    56   153    55   171 0.75 Molybdopterin guanine dinucleotide synthesis protein B
AAA_10               PF12846.2    304 sp|P27254|ARGK_ECOLI -            331    0.0029   17.0   0.5   1   1   1.8e-05     0.012   15.0   0.1     6    41    59    96    57   204 0.89 AAA-like domain
IstB_IS21            PF01695.12   178 sp|P27254|ARGK_ECOLI -            331     0.013   14.9   0.3   1   1   8.3e-05     0.056   12.8   0.0    43    81    50    88    12    92 0.78 IstB-like ATP binding protein
NTPase_1             PF03266.10   168 sp|P27254|ARGK_ECOLI -            331     0.013   15.2   0.1   1   1   5.5e-05     0.037   13.7   0.0     2    31    57    86    56    92 0.90 NTPase
AAA_17               PF13207.1    121 sp|P27254|ARGK_ECOLI -            331     0.015   16.0   1.1   1   1   4.7e-05     0.031   15.0   1.1     2    19    57    74    56   301 0.92 AAA domain
SRP54                PF00448.17   196 sp|P27254|ARGK_ECOLI -            331     0.019   14.3   0.1   1   1   0.00052      0.35   10.2   0.1     6   100    59   163    55   174 0.62 SRP54-type protein, GTPase domain
KaiC                 PF06745.8    227 sp|P27254|ARGK_ECOLI -            331     0.027   13.6   0.2   1   1   0.00014     0.096   11.7   0.0    24    58    59    92    45   105 0.93 KaiC
PRK                  PF00485.13   194 sp|P27254|ARGK_ECOLI -            331     0.042   13.3   0.0   1   1   0.00016       0.1   12.1   0.0     3    32    58    87    57   119 0.78 Phosphoribulokinase / Uridine kinase family
AAA_18               PF13238.1    129 sp|P27254|ARGK_ECOLI -            331     0.043   14.1   0.4   1   1   0.00017      0.12   12.7   0.0     3    21    59    77    57   164 0.81 AAA domain
AAA_22               PF13401.1    131 sp|P27254|ARGK_ECOLI -            331     0.049   13.7   0.2   1   2   0.00096      0.65   10.1   0.0     9    51    59    98    57   142 0.81 AAA domain
KAP_NTPase           PF07693.9    325 sp|P27254|ARGK_ECOLI -            331      0.05   12.5   0.0   1   1   0.00011     0.071   12.0   0.0     5   115    40   259    37   320 0.87 KAP family P-loop domain
DNA_photolyase       PF00875.13   165 sp|P27254|ARGK_ECOLI -            331     0.061   13.0   0.3   1   1   0.00014     0.095   12.4   0.3    44   112   242   310   211   322 0.87 DNA photolyase
FtsK_SpoIIIE         PF01580.13   205 sp|P27254|ARGK_ECOLI -            331     0.068   12.6   0.1   1   1   0.00024      0.16   11.4   0.0    43    79    59    93    26   118 0.86 FtsK/SpoIIIE family
ArsA_ATPase          PF02374.10   305 sp|P27254|ARGK_ECOLI -            331     0.076   12.0   0.3   1   1   0.00049      0.33    9.9   0.3     6    41    59    94    56   101 0.93 Anion-transporting ATPase
ABC_tran             PF00005.22   137 sp|P27254|ARGK_ECOLI -            331     0.094   13.0   0.4   1   1   0.00042      0.28   11.4   0.1    13    35    56    78    50   117 0.86 ABC transporter
LysE                 PF01810.13   191 sp|P11667|ARGO_ECOLI -            211   1.1e-59  200.9  16.2   1   1   8.7e-64   1.3e-59  200.7  16.2     2   190    14   201    13   202 0.96 LysE type translocator
Arg_repressor        PF01316.16    70 sp|P0A6D0|ARGR_ECOLI -            156   3.4e-26   90.5   0.1   1   1   7.1e-30   5.3e-26   89.9   0.1     2    69     6    74     5    75 0.97 Arginine repressor, DNA binding domain
Arg_repressor_C      PF02863.13    70 sp|P0A6D0|ARGR_ECOLI -            156   2.2e-24   84.7   0.1   1   1   4.9e-28   3.6e-24   84.0   0.1     2    69    82   150    81   151 0.96 Arginine repressor, C-terminal domain
SBP_bac_3            PF00497.15   225 sp|P09551|ARGT_ECOLI -            260   4.4e-65  219.0   1.2   1   1     1e-68     5e-65  218.9   1.2     1   224    28   254    28   255 0.97 Bacterial extracellular solute-binding proteins, family 3
NMT1                 PF09084.6    216 sp|P09551|ARGT_ECOLI -            260   3.2e-06   26.8   0.1   2   2   2.8e-08   0.00014   21.5   0.0    76   145   115   181   109   236 0.88 NMT1/THI5 like
DsrD                 PF08679.6     67 sp|P09551|ARGT_ECOLI -            260     0.062   13.3   0.2   1   1   3.1e-05      0.15   12.0   0.1    13    44    62    93    57   100 0.88 Dissimilatory sulfite reductase D (DsrD)
YmgB                 PF10798.3     61 sp|P75993|ARIR_ECOLI -             88   5.7e-29   99.7   2.6   2   2   3.8e-33   5.7e-29   99.7   2.6     1    61    28    88    28    88 0.98 Biofilm development protein YmgB/AriR
Lyase_1              PF00206.15   312 sp|P11447|ARLY_ECOLI -            457    4e-102  341.6   0.0   1   2  7.1e-105  2.1e-101  339.2   0.0     1   312     6   301     6   301 0.99 Lyase
ASL_C2               PF14698.1     70 sp|P11447|ARLY_ECOLI -            457   2.5e-28   97.9   0.0   1   1   2.3e-31   6.8e-28   96.5   0.0     1    69   364   432   364   433 0.98 Argininosuccinate lyase C-terminal
FUSC                 PF04632.7    650 sp|P11447|ARLY_ECOLI -            457    0.0014   17.1   2.8   1   1   7.9e-07    0.0024   16.4   2.8   492   636    56   190    43   197 0.88 Fusaric acid resistance protein family
ADSL_C               PF10397.4     81 sp|P11447|ARLY_ECOLI -            457     0.088   12.8   0.0   1   1   8.8e-05      0.26   11.3   0.0    12    44   373   405   362   432 0.82 Adenylosuccinate lyase C-terminus
Epimerase            PF01370.16   236 sp|P77398|ARNA_ECOLI -            660   1.8e-41  142.1   0.0   1   1   1.5e-44   2.8e-41  141.5   0.0     1   236   318   566   318   566 0.91 NAD dependent epimerase/dehydratase family
Formyl_trans_N       PF00551.14   181 sp|P77398|ARNA_ECOLI -            660     6e-25   87.8   0.0   1   1   4.9e-28   9.1e-25   87.2   0.0    63   178    59   174    17   177 0.90 Formyl transferase
Formyl_trans_C       PF02911.13   100 sp|P77398|ARNA_ECOLI -            660   3.8e-20   71.8   0.0   1   1   3.8e-23   7.1e-20   70.9   0.0     3    98   202   295   200   297 0.96 Formyl transferase, C-terminal domain
3Beta_HSD            PF01073.14   280 sp|P77398|ARNA_ECOLI -            660   6.3e-06   25.0   0.0   1   1   4.8e-09   8.9e-06   24.5   0.0     1   157   319   474   319   504 0.79 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10       PF13460.1    183 sp|P77398|ARNA_ECOLI -            660    0.0021   18.1   0.0   1   1   4.3e-06     0.008   16.1   0.0     1   143   318   490   318   529 0.71 NADH(P)-binding
NAD_binding_4        PF07993.7    249 sp|P77398|ARNA_ECOLI -            660    0.0068   15.3   0.0   1   1   0.00014      0.26   10.1   0.0     3   195   322   490   320   534 0.60 Male sterility protein
TrkA_N               PF02254.13   116 sp|P77398|ARNA_ECOLI -            660    0.0081   16.1   0.0   1   1     1e-05     0.019   14.9   0.0     2    69   319   389   318   439 0.75 TrkA-N domain
RmlD_sub_bind        PF04321.12   287 sp|P77398|ARNA_ECOLI -            660      0.01   14.7   0.0   2   2   2.2e-05     0.041   12.7   0.0     2   118   317   449   316   483 0.81 RmlD substrate binding domain
DegT_DnrJ_EryC1      PF01041.12   363 sp|P77690|ARNB_ECOLI -            379    1e-132  442.5   0.1   1   1  6.4e-136  1.2e-132  442.4   0.1     3   363    12   374    10   374 0.97 DegT/DnrJ/EryC1/StrS aminotransferase family
Aminotran_1_2        PF00155.16   363 sp|P77690|ARNB_ECOLI -            379   1.3e-09   37.4   0.1   1   2   1.9e-12   3.5e-09   36.0   0.0    46   197    35   164    18   210 0.89 Aminotransferase class I and II
Cys_Met_Meta_PP      PF01053.15   386 sp|P77690|ARNB_ECOLI -            379   2.9e-08   32.3   0.1   1   1   2.3e-11   4.2e-08   31.8   0.1    54   193    32   170    30   246 0.81 Cys/Met metabolism PLP-dependent enzyme
Beta_elim_lyase      PF01212.16   290 sp|P77690|ARNB_ECOLI -            379   6.2e-07   28.8   0.0   1   1   5.6e-10     1e-06   28.0   0.0    29   268    33   272    26   296 0.72 Beta-eliminating lyase
Aminotran_5          PF00266.14   371 sp|P77690|ARNB_ECOLI -            379   2.2e-06   26.6   0.2   1   1   1.6e-09     3e-06   26.2   0.2    55   297    42   277    35   320 0.81 Aminotransferase class-V
SelA                 PF03841.8    367 sp|P77690|ARNB_ECOLI -            379     0.027   13.2   0.1   1   1   4.4e-05     0.082   11.6   0.1    46   229    32   198    14   211 0.77 L-seryl-tRNA selenium transferase
PaRep2b              PF07775.6    512 sp|P77690|ARNB_ECOLI -            379     0.056   11.6   0.0   1   1   4.6e-05     0.085   11.0   0.0   221   250   303   332   291   338 0.86 PaRep2b protein
OKR_DC_1             PF01276.15   417 sp|P77690|ARNB_ECOLI -            379     0.067   11.7   0.0   1   1   6.6e-05      0.12   10.8   0.0    56   144    22   111     7   164 0.80 Orn/Lys/Arg decarboxylase, major domain
Glycos_transf_2      PF00535.21   169 sp|P77757|ARNC_ECOLI -            322   1.1e-30  106.5   0.0   1   1   5.9e-34   1.5e-30  106.1   0.0     1   165    11   171    11   175 0.85 Glycosyl transferase family 2
Glyco_tranf_2_3      PF13641.1    228 sp|P77757|ARNC_ECOLI -            322   1.2e-12   48.1   0.0   1   1   7.9e-16   1.9e-12   47.4   0.0     2   131     9   135     8   203 0.80 Glycosyltransferase like family 2
Glyco_tranf_2_2      PF10111.4    281 sp|P77757|ARNC_ECOLI -            322   1.1e-05   24.7   0.0   1   1   6.1e-09   1.5e-05   24.2   0.0     1   104    11   108    11   120 0.81 Glycosyltransferase like family 2
Glyco_tranf_2_4      PF13704.1     97 sp|P77757|ARNC_ECOLI -            322     0.011   15.9   0.0   1   1   1.1e-05     0.028   14.7   0.0     2    81    18   102    17   114 0.76 Glycosyl transferase family 2
Glyco_transf_21      PF13506.1    175 sp|P77757|ARNC_ECOLI -            322     0.065   12.5   0.0   1   1   4.6e-05      0.11   11.7   0.0    22    93    84   152    70   175 0.79 Glycosyl transferase family 21
DUF2207              PF09972.4    511 sp|P77757|ARNC_ECOLI -            322     0.073   11.6   0.0   1   1   3.8e-05     0.093   11.3   0.0   357   445   129   283   105   309 0.80 Predicted membrane protein (DUF2207)
Polysacc_deac_1      PF01522.16   124 sp|P76472|ARND_ECOLI -            296   2.7e-14   52.8   0.0   1   2   4.5e-18   6.6e-14   51.6   0.0    16   123    15   169     6   170 0.93 Polysaccharide deacetylase
EamA                 PF00892.15   126 sp|Q47377|ARNE_ECOLI -            111   3.5e-10   39.9   8.8   1   1     2e-13   4.2e-10   39.7   8.8    24   124     3   107     1   109 0.84 EamA-like transporter family
Multi_Drug_Res       PF00893.14    93 sp|Q47377|ARNE_ECOLI -            111   3.7e-08   33.7   4.9   1   1   2.4e-11     5e-08   33.2   4.9     1    93     1   100     1   100 0.87 Small Multidrug Resistance protein
EmrE                 PF13536.1    113 sp|Q47377|ARNE_ECOLI -            111   2.4e-06   27.6  12.6   1   1   1.8e-09   3.9e-06   27.0  12.6     3   106     4   109     1   111 0.79 Multidrug resistance efflux transporter
UPF0546              PF10639.4    113 sp|Q47377|ARNE_ECOLI -            111   4.7e-05   23.1   0.4   1   1   4.2e-08   8.9e-05   22.2   0.4    53   112    49   107    12   108 0.87 Uncharacterised protein family UPF0546
UPF0220              PF05255.6    166 sp|Q47377|ARNE_ECOLI -            111     0.084   12.1   1.8   1   2   0.00044      0.94    8.7   0.4    92   131    27    66     2    85 0.80 Uncharacterised protein family (UPF0220)
EamA                 PF00892.15   126 sp|P76474|ARNF_ECOLI -            128    0.0016   18.4  15.4   1   1   4.3e-07    0.0032   17.5  15.4    35   125    26   120     3   121 0.82 EamA-like transporter family
Multi_Drug_Res       PF00893.14    93 sp|P76474|ARNF_ECOLI -            128      0.02   15.3   7.5   1   1   7.8e-06     0.058   13.8   7.5    33    93    51   112     3   112 0.87 Small Multidrug Resistance protein
PMT                  PF02366.13   245 sp|P76473|ARNT_ECOLI -            550   1.7e-54  184.7  21.7   1   4   2.4e-58   1.7e-54  184.7  21.7     3   245     5   237     3   237 0.98 Dolichyl-phosphate-mannose-protein mannosyltransferase
PMT_2                PF13231.1    159 sp|P76473|ARNT_ECOLI -            550     3e-12   46.7  21.8   2   4   4.1e-16     3e-12   46.7  21.8     2   159    61   222    60   222 0.81 Dolichyl-phosphate-mannose-protein mannosyltransferase
EPSP_synthase        PF00275.15   419 sp|P0A6D3|AROA_ECOLI -            427  3.8e-164  546.0   0.0   1   1  2.9e-168  4.2e-164  545.9   0.0     2   419     7   420     6   420 0.97 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
DHQ_synthase         PF01761.15   261 sp|P07639|AROB_ECOLI -            362  2.5e-107  357.6   0.0   1   1    6e-111    3e-107  357.4   0.0     2   260    67   325    66   326 0.99 3-dehydroquinate synthase
Fe-ADH_2             PF13685.1    250 sp|P07639|AROB_ECOLI -            362   7.3e-17   61.5   0.1   1   1   1.4e-18   6.9e-15   55.0   0.1     2   210    17   242    16   269 0.70 Iron-containing alcohol dehydrogenase
Fe-ADH               PF00465.14   366 sp|P07639|AROB_ECOLI -            362   2.6e-09   36.2   2.0   1   2   5.5e-10   2.7e-06   26.2   0.1    22   185    34   184    15   189 0.80 Iron-containing alcohol dehydrogenase
Fe-ADH               PF00465.14   366 sp|P07639|AROB_ECOLI -            362   2.6e-09   36.2   2.0   2   2   6.3e-05      0.31    9.6   0.2   244   329   241   304   227   327 0.70 Iron-containing alcohol dehydrogenase
Chorismate_synt      PF01264.16   346 sp|P12008|AROC_ECOLI -            361  4.5e-148  492.3   0.0   1   1  3.4e-152  5.1e-148  492.1   0.0     1   346    10   346    10   346 0.99 Chorismate synthase
DHquinase_I          PF01487.10   224 sp|P05194|AROD_ECOLI -            252   6.3e-72  241.8   1.0   1   1   9.6e-76   7.1e-72  241.6   1.0     2   223    20   246    19   247 0.99 Type I 3-dehydroquinase
DUF4483              PF14825.1    206 sp|P05194|AROD_ECOLI -            252      0.04   13.5   0.0   1   1   7.4e-06     0.055   13.1   0.0    66    99    94   127    21   159 0.76 Domain of unknown function (DUF4483)
Shikimate_dh_N       PF08501.6     83 sp|P15770|AROE_ECOLI -            272   5.8e-24   83.9   0.0   1   1   2.4e-27     9e-24   83.3   0.0     1    83     6    88     6    88 0.99 Shikimate dehydrogenase substrate binding domain
Shikimate_DH         PF01488.15   135 sp|P15770|AROE_ECOLI -            272   5.6e-15   55.6   0.0   1   1   2.5e-18   9.3e-15   54.9   0.0    12    86   119   191   111   213 0.90 Shikimate / quinate 5-dehydrogenase
NAD_binding_10       PF13460.1    183 sp|P15770|AROE_ECOLI -            272     0.011   15.7   0.0   1   1     4e-06     0.015   15.3   0.0     1    71   122   191   122   234 0.81 NADH(P)-binding
DUF2622              PF11080.3     96 sp|P15770|AROE_ECOLI -            272     0.068   13.0   0.2   1   2    0.0002      0.76    9.6   0.0    11    60    60   110    57   115 0.81 Protein of unknown function (DUF2622)
DAHP_synth_1         PF00793.15   272 sp|P00888|AROF_ECOLI -            356  2.3e-102  341.3   0.0   1   1  3.8e-106  2.8e-102  341.0   0.0     8   271    41   340    21   341 0.96 DAHP synthetase I family
DAHP_synth_1         PF00793.15   272 sp|P0AB91|AROG_ECOLI -            350  1.4e-105  351.8   0.0   1   1  1.1e-109  1.6e-105  351.6   0.0     8   271    40   338    25   339 0.96 DAHP synthetase I family
DAHP_synth_1         PF00793.15   272 sp|P00887|AROH_ECOLI -            348  8.6e-103  342.7   0.0   1   1  1.4e-106    1e-102  342.4   0.0     8   270    39   336    24   338 0.97 DAHP synthetase I family
tRNA-synt_1d         PF00750.14   354 sp|P00887|AROH_ECOLI -            348      0.19   10.5   0.0   1   1   3.5e-05      0.26   10.0   0.0   194   239   214   256   193   304 0.76 tRNA synthetases class I (R)
SKI                  PF01202.17   158 sp|P0A6D7|AROK_ECOLI -            173   6.1e-56  188.6   0.4   1   1   1.3e-58   6.9e-56  188.4   0.4     1   157    13   170    13   171 0.99 Shikimate kinase
AAA_17               PF13207.1    121 sp|P0A6D7|AROK_ECOLI -            173   3.1e-10   40.9   0.1   1   1   8.9e-13   4.6e-10   40.3   0.1     2   110     7   116     6   157 0.68 AAA domain
AAA_18               PF13238.1    129 sp|P0A6D7|AROK_ECOLI -            173   9.8e-09   35.6   0.1   1   1   2.7e-11   1.4e-08   35.1   0.1     1   106     7   134     7   158 0.72 AAA domain
AAA_33               PF13671.1    143 sp|P0A6D7|AROK_ECOLI -            173   5.7e-08   32.7   0.1   1   2     1e-09   5.2e-07   29.6   0.1     2   116     7   115     7   143 0.66 AAA domain
Cytidylate_kin2      PF13189.1    179 sp|P0A6D7|AROK_ECOLI -            173   1.2e-06   28.5   0.1   1   2   5.6e-07   0.00028   20.8   0.0     2    31     7    36     6    47 0.84 Cytidylate kinase-like family
AAA                  PF00004.24   132 sp|P0A6D7|AROK_ECOLI -            173   0.00068   19.8   0.0   1   1   3.3e-06    0.0017   18.5   0.0     2    28     8    34     7    80 0.85 ATPase family associated with various cellular activities (AAA)
APS_kinase           PF01583.15   157 sp|P0A6D7|AROK_ECOLI -            173    0.0016   18.0   0.1   1   1   6.3e-06    0.0032   17.1   0.1     5   113     7   110     3   124 0.63 Adenylylsulphate kinase
AAA_22               PF13401.1    131 sp|P0A6D7|AROK_ECOLI -            173    0.0026   17.8   0.1   1   1   1.2e-05    0.0062   16.6   0.0     3    31     3    31     1   101 0.83 AAA domain
ABC_tran             PF00005.22   137 sp|P0A6D7|AROK_ECOLI -            173    0.0033   17.7   0.2   1   1   1.4e-05    0.0071   16.6   0.2    10    37     3    30     1   170 0.81 ABC transporter
His_biosynth         PF00977.16   229 sp|P0A6D7|AROK_ECOLI -            173    0.0047   16.2   0.1   1   1   1.2e-05    0.0062   15.8   0.1    40    96    42    99    23   116 0.89 Histidine biosynthesis protein
AAA_14               PF13173.1    128 sp|P0A6D7|AROK_ECOLI -            173    0.0049   16.7   0.1   1   1   6.1e-05     0.031   14.1   0.1     2    28     4    34     3   106 0.79 AAA domain
AAA_16               PF13191.1    185 sp|P0A6D7|AROK_ECOLI -            173    0.0053   16.7   0.1   1   1   2.9e-05     0.015   15.3   0.1    23    49     3    29     2   170 0.92 AAA ATPase domain
Zeta_toxin           PF06414.7    201 sp|P0A6D7|AROK_ECOLI -            173    0.0058   15.7   0.1   1   1   3.6e-05     0.018   14.1   0.0    16    41     4    29     2    40 0.86 Zeta toxin
AAA_25               PF13481.1    194 sp|P0A6D7|AROK_ECOLI -            173    0.0066   15.8   0.2   1   2   0.00011     0.057   12.8   0.0    36   111     7    84     1   109 0.78 AAA domain
AAA_5                PF07728.9    139 sp|P0A6D7|AROK_ECOLI -            173    0.0071   16.0   0.0   1   1   3.9e-05      0.02   14.6   0.0     1    26     6    31     6    35 0.91 AAA domain (dynein-related subfamily)
AAA_10               PF12846.2    304 sp|P0A6D7|AROK_ECOLI -            173    0.0081   15.6   0.2   1   1   3.1e-05     0.016   14.6   0.1     2    25     5    28     4    56 0.90 AAA-like domain
RNA_helicase         PF00910.17   107 sp|P0A6D7|AROK_ECOLI -            173     0.012   15.8   0.0   1   1   4.7e-05     0.024   14.8   0.0     1    33     7    38     7    77 0.84 RNA helicase
AAA_29               PF13555.1     62 sp|P0A6D7|AROK_ECOLI -            173     0.015   14.8   0.0   1   1   5.4e-05     0.027   13.9   0.0    23    39     4    20     1    21 0.86 P-loop containing region of AAA domain
AAA_PrkA             PF08298.6    358 sp|P0A6D7|AROK_ECOLI -            173     0.018   13.7   0.0   1   1   6.9e-05     0.035   12.7   0.0    87   114     3    30     1    37 0.86 PrkA AAA domain
AAA_28               PF13521.1    163 sp|P0A6D7|AROK_ECOLI -            173     0.022   14.7   0.0   1   1   0.00032      0.16   11.9   0.0     2    25     7    31     6    46 0.85 AAA domain
UPF0079              PF02367.12   123 sp|P0A6D7|AROK_ECOLI -            173     0.027   14.1   0.0   1   1   0.00014     0.073   12.7   0.0    18    41     7    30     2    35 0.89 Uncharacterised P-loop hydrolase UPF0079
DUF258               PF03193.11   161 sp|P0A6D7|AROK_ECOLI -            173     0.034   13.3   0.0   1   1   8.2e-05     0.042   13.0   0.0    35    63     4    32     1    91 0.87 Protein of unknown function, DUF258
MMR_HSR1             PF01926.18   116 sp|P0A6D7|AROK_ECOLI -            173     0.042   13.8   0.0   1   1   0.00016     0.082   12.8   0.0     2    58     7    77     6   165 0.62 50S ribosome-binding GTPase
PduV-EutP            PF10662.4    143 sp|P0A6D7|AROK_ECOLI -            173     0.055   12.9   0.0   1   1   0.00018     0.091   12.2   0.0     2    36     5    41     4    47 0.79 Ethanolamine utilisation - propanediol utilisation
TrwB_AAD_bind        PF10412.4    386 sp|P0A6D7|AROK_ECOLI -            173     0.056   12.0   0.0   1   1   0.00014     0.073   11.6   0.0    13    40     2    29     1    92 0.90 Type IV secretion-system coupling protein DNA-binding domain
Mg_chelatase         PF01078.16   207 sp|P0A6D7|AROK_ECOLI -            173     0.056   12.5   0.0   1   1   0.00017     0.087   11.9   0.0    22    48     4    30     1   111 0.82 Magnesium chelatase, subunit ChlI
GTP_EFTU             PF00009.22   188 sp|P0A6D7|AROK_ECOLI -            173     0.068   12.6   0.0   1   1   0.00014     0.072   12.5   0.0     3    38     4    40     2   128 0.84 Elongation factor Tu GTP binding domain
IstB_IS21            PF01695.12   178 sp|P0A6D7|AROK_ECOLI -            173     0.071   12.5   0.0   1   1   0.00026      0.13   11.6   0.0    45    70     2    27     1    34 0.87 IstB-like ATP binding protein
Sigma54_activ_2      PF14532.1    138 sp|P0A6D7|AROK_ECOLI -            173      0.12   12.3   0.0   1   1   0.00079       0.4   10.7   0.0    20    44     3    27     1    45 0.86 Sigma-54 interaction domain
SKI                  PF01202.17   158 sp|P0A6E1|AROL_ECOLI -            174   3.6e-48  163.4   0.0   1   1     6e-51   4.1e-48  163.2   0.0     1   157    11   168    11   169 0.98 Shikimate kinase
AAA_17               PF13207.1    121 sp|P0A6E1|AROL_ECOLI -            174   1.9e-06   28.6   0.0   1   1   6.3e-09   4.3e-06   27.5   0.0     3    66     6    67     5   172 0.66 AAA domain
AAA                  PF00004.24   132 sp|P0A6E1|AROL_ECOLI -            174   2.4e-06   27.8   0.0   1   2   1.7e-07   0.00011   22.3   0.0     2    30     6    34     5    95 0.86 ATPase family associated with various cellular activities (AAA)
AAA_18               PF13238.1    129 sp|P0A6E1|AROL_ECOLI -            174   2.2e-05   24.7   0.0   1   1   7.8e-08   5.3e-05   23.5   0.0     2   120     6   122     5   141 0.75 AAA domain
AAA_5                PF07728.9    139 sp|P0A6E1|AROL_ECOLI -            174    0.0001   22.0   0.1   1   1   4.8e-07   0.00032   20.4   0.0     1    47     4    54     4    90 0.67 AAA domain (dynein-related subfamily)
Cytidylate_kin2      PF13189.1    179 sp|P0A6E1|AROL_ECOLI -            174    0.0005   20.0   0.0   1   1   1.7e-05     0.012   15.5   0.0     8   134    11   114     7   162 0.60 Cytidylate kinase-like family
AAA_33               PF13671.1    143 sp|P0A6E1|AROL_ECOLI -            174    0.0005   19.9   0.1   1   1   3.2e-06    0.0022   17.8   0.1     3    42     6    46     5   171 0.71 AAA domain
AAA_16               PF13191.1    185 sp|P0A6E1|AROL_ECOLI -            174   0.00052   20.0   0.1   1   1   1.5e-06     0.001   19.1   0.1    27    52     5    33     2   169 0.76 AAA ATPase domain
AAA_22               PF13401.1    131 sp|P0A6E1|AROL_ECOLI -            174    0.0011   19.0   0.0   1   1   8.1e-06    0.0054   16.8   0.0     7    94     5   152     2   172 0.57 AAA domain
Sigma54_activ_2      PF14532.1    138 sp|P0A6E1|AROL_ECOLI -            174    0.0013   18.7   0.0   1   2   0.00013      0.09   12.8   0.0    22    57     3    36     1    87 0.81 Sigma-54 interaction domain
AAA_14               PF13173.1    128 sp|P0A6E1|AROL_ECOLI -            174    0.0031   17.4   0.0   1   1   1.5e-05    0.0099   15.7   0.0     4    37     4    33     2    67 0.73 AAA domain
Thymidylate_kin      PF02223.12   186 sp|P0A6E1|AROL_ECOLI -            174    0.0033   16.8   0.0   2   2    0.0015      0.99    8.7   0.0   108   186    84   164    75   164 0.69 Thymidylate kinase
RNA_helicase         PF00910.17   107 sp|P0A6E1|AROL_ECOLI -            174    0.0052   16.9   0.0   1   1   1.6e-05      0.01   15.9   0.0     2    35     6    38     5    66 0.76 RNA helicase
NACHT                PF05729.7    166 sp|P0A6E1|AROL_ECOLI -            174     0.026   14.1   0.0   1   2   0.00034      0.23   11.1   0.0     2    33     4    35     3    67 0.81 NACHT domain
AAA_28               PF13521.1    163 sp|P0A6E1|AROL_ECOLI -            174     0.053   13.4   0.1   1   1   0.00013      0.09   12.7   0.1     4    27     7    31     5    94 0.80 AAA domain
Arch_ATPase          PF01637.13   234 sp|P0A6E1|AROL_ECOLI -            174     0.067   12.8   0.0   1   1   0.00019      0.13   11.9   0.0    21    36     3    18     1    70 0.84 Archaeal ATPase
AAA_25               PF13481.1    194 sp|P0A6E1|AROL_ECOLI -            174     0.073   12.4   0.2   1   1   0.00063      0.42    9.9   0.2    36    58     5    27     1   159 0.66 AAA domain
AAA_24               PF13479.1    213 sp|P0A6E1|AROL_ECOLI -            174       0.1   12.1   0.0   1   1   0.00016      0.11   12.0   0.0     7    57     6    59     3   153 0.80 AAA domain
AAA_2                PF07724.9    171 sp|P0A6E1|AROL_ECOLI -            174       0.1   12.5   0.0   1   1   0.00041      0.28   11.1   0.0     8    73     7    83     3    86 0.90 AAA domain (Cdc48 subfamily)
ABC_tran             PF00005.22   137 sp|P0A6E1|AROL_ECOLI -            174      0.14   12.4   0.0   1   1    0.0004      0.27   11.5   0.0    14    35     5    26     2    69 0.86 ABC transporter
TFIIA_gamma_N        PF02268.11    49 sp|P0A6E1|AROL_ECOLI -            174      0.15   11.6   0.0   1   1   0.00061      0.41   10.2   0.0     8    36    15    45    14    48 0.80 Transcription initiation factor IIA, gamma subunit, helical domain
AA_permease          PF00324.16   478 sp|P15993|AROP_ECOLI -            457    8e-129  430.0  47.5   1   1  2.4e-132  8.9e-129  429.9  47.5     1   475    19   454    19   457 0.98 Amino acid permease
AA_permease_2        PF13520.1    426 sp|P15993|AROP_ECOLI -            457   1.5e-44  152.2  50.8   1   1   5.2e-48   1.9e-44  151.8  50.8     8   412    22   426    18   444 0.86 Amino acid permease
DUF1039              PF06287.6     66 sp|P15993|AROP_ECOLI -            457     0.097   12.5   0.0   1   1   6.7e-05      0.25   11.2   0.0    27    55   301   329   284   350 0.85 Protein of unknown function (DUF1039)
ArsB                 PF02040.10   423 sp|P0AB93|ARSB_ECOLI -            429  1.9e-230  765.0  39.1   1   1  5.8e-234  2.2e-230  764.9  39.1     1   423     3   425     3   425 1.00 Arsenical pump membrane protein
CitMHS               PF03600.11   351 sp|P0AB93|ARSB_ECOLI -            429     6e-15   54.6  35.6   1   1   2.3e-18   8.4e-15   54.1  35.6     3   345     7   363     5   369 0.82 Citrate transporter
PsaX                 PF08078.7     37 sp|P0AB93|ARSB_ECOLI -            429     0.037   13.9   3.7   1   2   1.2e-05     0.044   13.7   0.4     9    29   219   240   215   241 0.75 PsaX family
ArsC                 PF03960.10   110 sp|P0AB96|ARSC_ECOLI -            141   9.8e-32  109.3   0.0   1   1   2.4e-35   1.2e-31  109.0   0.0     1   109     7   114     7   115 0.99 ArsC family
PGM_PMM_IV           PF00408.15    73 sp|P0AB96|ARSC_ECOLI -            141    0.0012   18.7   0.3   1   2   8.1e-06      0.04   13.9   0.0    40    64    22    47     8    52 0.84 Phosphoglucomutase/phosphomannomutase, C-terminal domain
Glutaredoxin         PF00462.19    60 sp|P0AB96|ARSC_ECOLI -            141    0.0047   16.8   0.0   1   2   3.5e-05      0.17   11.8   0.0     1    44     4    47     4    54 0.94 Glutaredoxin
SBP_bac_3            PF00497.15   225 sp|P30859|ARTI_ECOLI -            243   6.4e-68  228.3   0.8   1   1   1.5e-71   7.3e-68  228.1   0.8     1   224    23   242    23   243 0.96 Bacterial extracellular solute-binding proteins, family 3
Phosphonate-bd       PF12974.2    243 sp|P30859|ARTI_ECOLI -            243     0.011   15.0   0.1   1   1     2e-05     0.097   12.0   0.1    86   177   107   187    98   233 0.82 ABC transporter, phosphonate, periplasmic substrate-binding protein
DUF1090              PF06476.7    115 sp|P30859|ARTI_ECOLI -            243     0.076   12.6   0.3   1   1   3.1e-05      0.15   11.6   0.0    33    66   205   238   201   243 0.85 Protein of unknown function (DUF1090)
BPD_transp_1         PF00528.17   185 sp|P0AE30|ARTM_ECOLI -            222     2e-12   46.9  16.4   2   2   1.1e-15   1.7e-11   44.0  16.6     3   182    32   214    14   217 0.90 Binding-protein-dependent transport system inner membrane component
SBP_bac_3            PF00497.15   225 sp|P30860|ARTJ_ECOLI -            243   6.8e-72  241.3   0.3   1   1   1.6e-75   7.7e-72  241.1   0.3     1   224    23   242    23   243 0.96 Bacterial extracellular solute-binding proteins, family 3
NMT1                 PF09084.6    216 sp|P30860|ARTJ_ECOLI -            243   9.2e-05   22.1   0.2   2   2   6.6e-08   0.00032   20.3   0.2    74   146   107   173    98   189 0.75 NMT1/THI5 like
Phosphonate-bd       PF12974.2    243 sp|P30860|ARTJ_ECOLI -            243    0.0004   19.8   0.1   1   1   2.2e-07    0.0011   18.4   0.1    87   226   109   236    90   241 0.77 ABC transporter, phosphonate, periplasmic substrate-binding protein
ABC_tran             PF00005.22   137 sp|P0AAF6|ARTP_ECOLI -            242   3.2e-35  121.3   0.0   1   1   5.5e-38   4.5e-35  120.9   0.0     3   137    20   170    18   170 0.94 ABC transporter
AAA_21               PF13304.1    303 sp|P0AAF6|ARTP_ECOLI -            242     1e-14   55.1   0.3   1   2   5.5e-06    0.0045   16.9   0.2     3    41    32    68    30    84 0.75 AAA domain
AAA_21               PF13304.1    303 sp|P0AAF6|ARTP_ECOLI -            242     1e-14   55.1   0.3   2   2   6.8e-12   5.6e-09   36.3   0.0   233   297   138   199   113   203 0.85 AAA domain
SMC_N                PF02463.14   220 sp|P0AAF6|ARTP_ECOLI -            242     5e-07   29.1   0.0   2   2   8.3e-08   6.8e-05   22.1   0.0   135   209   134   212    68   220 0.74 RecF/RecN/SMC N terminal domain
AAA_16               PF13191.1    185 sp|P0AAF6|ARTP_ECOLI -            242   4.1e-06   26.9   0.1   1   1     1e-08   8.2e-06   25.9   0.1    16    82    19    84    14   215 0.76 AAA ATPase domain
DUF258               PF03193.11   161 sp|P0AAF6|ARTP_ECOLI -            242    0.0002   20.5   0.0   1   1   3.7e-07   0.00031   19.9   0.0    34    58    27    51     3   108 0.75 Protein of unknown function, DUF258
AAA_10               PF12846.2    304 sp|P0AAF6|ARTP_ECOLI -            242   0.00023   20.6   0.2   1   2   0.00015      0.12   11.7   0.0     4    29    31    57    28    78 0.85 AAA-like domain
AAA_15               PF13175.1    415 sp|P0AAF6|ARTP_ECOLI -            242   0.00027   20.1   0.1   2   2   2.1e-05     0.018   14.1   0.1   372   408   162   198   148   200 0.90 AAA ATPase domain
AAA_29               PF13555.1     62 sp|P0AAF6|ARTP_ECOLI -            242   0.00056   19.3   0.0   1   1   1.2e-06     0.001   18.5   0.0    18    51    24    56    13    65 0.76 P-loop containing region of AAA domain
AAA_22               PF13401.1    131 sp|P0AAF6|ARTP_ECOLI -            242   0.00098   19.2   0.2   1   1   2.1e-05     0.017   15.2   0.2     6   121    30   197    24   206 0.54 AAA domain
AAA_13               PF13166.1    712 sp|P0AAF6|ARTP_ECOLI -            242    0.0026   16.3   0.0   2   2   5.6e-05     0.046   12.1   0.0   527   578   159   208   149   230 0.88 AAA domain
AAA_25               PF13481.1    194 sp|P0AAF6|ARTP_ECOLI -            242     0.012   15.0   0.2   1   2   0.00049       0.4   10.0   0.0    30    50    25    45    20    51 0.91 AAA domain
AAA_23               PF13476.1    202 sp|P0AAF6|ARTP_ECOLI -            242     0.017   15.4   0.0   1   1   3.1e-05     0.026   14.8   0.0     1    41     2    50     2    77 0.79 AAA domain
IstB_IS21            PF01695.12   178 sp|P0AAF6|ARTP_ECOLI -            242     0.034   13.5   0.8   1   2   0.00067      0.55    9.6   0.0    46    63    27    44    25    50 0.87 IstB-like ATP binding protein
ABC_ATPase           PF09818.4    448 sp|P0AAF6|ARTP_ECOLI -            242     0.044   12.3   0.3   1   1   0.00073       0.6    8.6   0.1   324   353   143   172   140   230 0.71 Predicted ATPase of the ABC class
MMR_HSR1             PF01926.18   116 sp|P0AAF6|ARTP_ECOLI -            242      0.12   12.2   0.1   1   1   0.00021      0.17   11.8   0.1     2    37    31    72    30   216 0.81 50S ribosome-binding GTPase
Miro                 PF08477.8    119 sp|P0AAF6|ARTP_ECOLI -            242      0.13   12.8   0.0   1   1   0.00047      0.39   11.2   0.0     2    30    31    58    30   132 0.82 Miro-like protein
SbcCD_C              PF13558.1     90 sp|P0AAF6|ARTP_ECOLI -            242      0.13   12.1   0.1   1   1   0.00071      0.58   10.1   0.1    63    89   159   185   136   186 0.77 Putative exonuclease SbcCD, C subunit
BPD_transp_1         PF00528.17   185 sp|P0AE34|ARTQ_ECOLI -            238   1.6e-15   57.1  12.1   1   1   1.1e-19   1.6e-15   57.1  12.1     1   183    25   230    22   232 0.89 Binding-protein-dependent transport system inner membrane component
Glyco_hydro_1        PF00232.13   455 sp|P24240|ASCB_ECOLI -            474  1.1e-130  435.8   0.4   1   1  1.8e-134  1.3e-130  435.6   0.4     4   454     3   470     1   471 0.92 Glycosyl hydrolase family 1
Cellulase            PF00150.13   281 sp|P24240|ASCB_ECOLI -            474    0.0031   16.7   0.0   1   1   7.6e-07    0.0056   15.9   0.0    22    77    72   127    58   170 0.88 Cellulase (glycosyl hydrolase family 5)
SPASM                PF13186.1     64 sp|P25550|ASLB_ECOLI -            411   3.2e-13   49.8   0.5   1   1   1.9e-16   7.1e-13   48.6   0.5     4    64   282   343   276   343 0.90 Iron-sulfur cluster-binding domain
Radical_SAM          PF04055.16   166 sp|P25550|ASLB_ECOLI -            411   9.7e-13   48.6   0.0   1   1   4.5e-16   1.7e-12   47.8   0.0     6   160    20   182    16   208 0.82 Radical SAM superfamily
Fer4_12              PF13353.1    139 sp|P25550|ASLB_ECOLI -            411   1.5e-07   31.6   0.0   1   1   7.6e-11   2.8e-07   30.7   0.0    13   116    19   127    17   150 0.66 4Fe-4S single cluster domain
Fer4_14              PF13394.1    119 sp|P25550|ASLB_ECOLI -            411   0.00021   21.3   0.0   1   2     2e-07   0.00075   19.5   0.0     6    60    19    78    18   133 0.63 4Fe-4S single cluster domain
Sulfatase            PF00884.18   308 sp|P25549|ASLA_ECOLI -            551   6.5e-88  294.8   0.1   1   1   2.3e-91   8.6e-88  294.4   0.1     1   307    86   418    86   419 0.97 Sulfatase
Phosphodiest         PF01663.17   365 sp|P25549|ASLA_ECOLI -            551    0.0001   21.7   1.0   1   1   1.3e-06    0.0047   16.2   0.9    19   244   112   358    88   371 0.55 Type I phosphodiesterase / nucleotide pyrophosphatase
DUF229               PF02995.12   497 sp|P25549|ASLA_ECOLI -            551   0.00014   20.4   0.0   2   2   5.1e-07    0.0019   16.7   0.0   275   343   272   358   264   480 0.79 Protein of unknown function (DUF229)
Sulfatase_C          PF14707.1    131 sp|P25549|ASLA_ECOLI -            551   0.00019   21.7   0.0   1   1   1.9e-07    0.0007   19.8   0.0     3    86   452   540   450   547 0.75 C-terminal region of aryl-sulfatase
AsnA                 PF03590.10   244 sp|P00963|ASNA_ECOLI -            330  1.2e-129  430.9   0.0   1   1    2e-133  1.5e-129  430.6   0.0     2   244     4   246     3   246 0.99 Aspartate-ammonia ligase
tRNA-synt_2          PF00152.15   335 sp|P00963|ASNA_ECOLI -            330   3.4e-05   22.7   0.0   2   2   7.9e-07    0.0058   15.4   0.0   280   327   266   313   242   315 0.78 tRNA synthetases class II (D, K and N)
Asn_synthase         PF00733.16   255 sp|P22106|ASNB_ECOLI -            554   1.8e-76  257.0   0.1   1   1   1.8e-79   3.9e-76  255.9   0.1     1   255   211   450   211   450 0.99 Asparagine synthase
GATase_7             PF13537.1    125 sp|P22106|ASNB_ECOLI -            554   3.5e-42  143.0   0.0   1   1   3.5e-45   7.3e-42  142.0   0.0     1   124    48   166    48   167 0.96 Glutamine amidotransferase domain
GATase_6             PF13522.1    133 sp|P22106|ASNB_ECOLI -            554   5.2e-37  126.7   0.0   1   1     7e-40   1.5e-36  125.3   0.0     1   133    33   161    33   161 0.98 Glutamine amidotransferase domain
DUF3700              PF12481.3    228 sp|P22106|ASNB_ECOLI -            554   6.5e-11   41.8   0.0   1   1   5.7e-14   1.2e-10   40.9   0.0    83   204    76   193    59   203 0.80 Aluminium induced protein
GATase_2             PF00310.16   361 sp|P22106|ASNB_ECOLI -            554   5.4e-09   35.2   0.0   1   3   3.8e-05     0.081   11.6   0.0     1    51     2    45     2    57 0.86 Glutamine amidotransferases class-II
GATase_2             PF00310.16   361 sp|P22106|ASNB_ECOLI -            554   5.4e-09   35.2   0.0   2   3   6.6e-05      0.14   10.8   0.0   213   246    58    96    41   113 0.74 Glutamine amidotransferases class-II
GATase_2             PF00310.16   361 sp|P22106|ASNB_ECOLI -            554   5.4e-09   35.2   0.0   3   3   9.5e-05       0.2   10.3   0.0   315   360   114   161    94   162 0.90 Glutamine amidotransferases class-II
NAD_synthase         PF02540.12   242 sp|P22106|ASNB_ECOLI -            554    0.0069   15.3   0.0   1   1   6.3e-06     0.013   14.3   0.0     4    80   211   299   209   361 0.76 NAD synthase
tRNA_Me_trans        PF03054.11   356 sp|P22106|ASNB_ECOLI -            554     0.053   12.0   0.0   1   1   3.9e-05     0.082   11.4   0.0     5    71   232   301   230   338 0.80 tRNA methyl transferase
Lyase_1              PF00206.15   312 sp|P0AC38|ASPA_ECOLI -            478  1.1e-117  392.7   0.0   1   1  1.7e-121  1.3e-117  392.5   0.0     1   312    13   345    13   345 0.99 Lyase
FumaraseC_C          PF10415.4     55 sp|P0AC38|ASPA_ECOLI -            478   5.2e-21   74.4   0.0   1   1   1.9e-24   1.4e-20   73.1   0.0     1    55   411   465   411   465 0.99 Fumarase C C-terminus
Asparaginase         PF00710.15   313 sp|P0A962|ASPG1_ECOLI -            338  2.3e-112  374.9   0.0   1   1  5.3e-116  2.6e-112  374.7   0.0     2   313     6   323     5   323 0.97 Asparaginase
AAA_31               PF13614.1    157 sp|P0A962|ASPG1_ECOLI -            338     0.057   13.3   0.0   1   2   0.00015      0.75    9.7   0.0    93   124    54    89    48   118 0.77 AAA domain
WHIM1                PF15612.1     50 sp|P0A962|ASPG1_ECOLI -            338      0.15   12.0   0.0   1   1   7.3e-05      0.36   10.8   0.0     8    46   288   329   284   332 0.88 WSTF, HB1, Itc1p, MBD9 motif 1
Asparaginase         PF00710.15   313 sp|P00805|ASPG2_ECOLI -            348   5.8e-89  298.0   4.3   1   1   4.5e-93   6.7e-89  297.8   4.3     1   313    25   342    25   342 0.96 Asparaginase
Asr                  PF06392.6     19 sp|P36560|ASR_ECOLI  -            102   6.7e-07   29.5  23.9   1   2   5.4e-10   6.7e-07   29.5  23.9     1    19    44    62    44    62 0.99 Acid shock protein repeat
Asr                  PF06392.6     19 sp|P36560|ASR_ECOLI  -            102   6.7e-07   29.5  23.9   2   2   0.00016       0.2   12.0  24.0     3    19    61    83    61    83 0.90 Acid shock protein repeat
DUF2574              PF10836.3     93 sp|P36560|ASR_ECOLI  -            102    0.0049   16.5   0.8   1   1   4.8e-06    0.0059   16.2   0.8     3    53     2    52     1    88 0.71 Protein of unknown function (DUF2574)
DUF1510              PF07423.6    217 sp|P36560|ASR_ECOLI  -            102     0.029   13.7   7.1   1   1   2.6e-05     0.032   13.5   7.1    26   113     5    89     2   101 0.41 Protein of unknown function (DUF1510)
RR_TM4-6             PF06459.7    274 sp|P36560|ASR_ECOLI  -            102      0.18   11.6  14.6   1   1   0.00017      0.21   11.4  14.6    69   145    23    97     3   102 0.47 Ryanodine Receptor TM 4-6
Zip                  PF02535.17   317 sp|P36560|ASR_ECOLI  -            102       0.2   10.6   6.7   1   1   0.00019      0.24   10.3   6.7    88   165    14    95     2   101 0.52 ZIP Zinc transporter
Paramyxo_ncap        PF00973.14   524 sp|P36560|ASR_ECOLI  -            102      0.35    9.4   4.2   1   1   0.00033      0.41    9.2   4.2   371   449    11    91     5   101 0.60 Paramyxovirus nucleocapsid protein
DUF4603              PF15376.1   1286 sp|P36560|ASR_ECOLI  -            102      0.57    7.3  10.0   1   1   0.00053      0.66    7.0  10.0   186   259    16    90     6    98 0.73 Domain of unknown function (DUF4603)
Arginosuc_synth      PF00764.14   388 sp|P0A6E4|ASSY_ECOLI -            447   6.8e-57  193.2   0.0   1   1   1.7e-60   8.5e-57  192.9   0.0     2   380    16   408    15   415 0.88 Arginosuccinate synthase
QueC                 PF06508.8    210 sp|P0A6E4|ASSY_ECOLI -            447     0.022   14.0   0.0   1   1   8.6e-06     0.043   13.1   0.0     4    62    16    74    13    87 0.89 Queuosine biosynthesis protein QueC
Asn_synthase         PF00733.16   255 sp|P0A6E4|ASSY_ECOLI -            447     0.086   12.3   0.0   1   1   3.2e-05      0.16   11.4   0.0    12    61     6    54     2    87 0.65 Asparagine synthase
AstA                 PF04958.7    342 sp|P0AE37|ASTA_ECOLI -            344  4.2e-142  472.6   0.0   1   1  6.3e-146  4.7e-142  472.4   0.0     1   341     1   336     1   337 0.97 Arginine N-succinyltransferase beta subunit
Acetyltransf_8       PF13523.1    152 sp|P0AE37|ASTA_ECOLI -            344    0.0063   16.3   0.0   1   1   2.1e-06     0.016   15.1   0.0   104   144   214   252   192   258 0.84 Acetyltransferase (GNAT) domain
AstB                 PF04996.7    440 sp|P76216|ASTB_ECOLI -            447  1.6e-248  824.7   1.7   1   1  1.3e-252  1.9e-248  824.4   1.7     1   439     1   441     1   443 1.00 Succinylarginine dihydrolase
Aminotran_3          PF00202.16   339 sp|P77581|ASTC_ECOLI -            406  1.9e-112  375.4   0.0   1   1  4.7e-116  2.3e-112  375.2   0.0     3   337    26   343    24   345 0.99 Aminotransferase class-III
Aminotran_1_2        PF00155.16   363 sp|P77581|ASTC_ECOLI -            406   1.3e-06   27.6   0.0   1   1   3.2e-10   1.6e-06   27.3   0.0    61   327    78   361    47   393 0.69 Aminotransferase class I and II
Aminotran_5          PF00266.14   371 sp|P77581|ASTC_ECOLI -            406     0.029   13.1   0.0   1   1   1.7e-05     0.083   11.6   0.0    52   179    87   227    81   235 0.82 Aminotransferase class-V
Aldedh               PF00171.17   462 sp|P76217|ASTD_ECOLI -            492  3.2e-115  385.1   0.0   1   1  2.5e-119  3.8e-115  384.8   0.0     1   451     9   457     9   465 0.94 Aldehyde dehydrogenase family
AstE_AspA            PF04952.9    292 sp|P76215|ASTE_ECOLI -            322   1.8e-72  243.6   0.0   1   1   1.4e-76   2.1e-72  243.5   0.0     4   289    45   319    42   322 0.97 Succinylglutamate desuccinylase / Aspartoacylase family
Acetyltransf_3       PF13302.1    142 sp|P0A951|ATDA_ECOLI -            186   3.5e-23   82.3   0.0   1   1   2.3e-26   4.3e-23   82.0   0.0     3   141     8   140     6   141 0.81 Acetyltransferase (GNAT) domain
Acetyltransf_1       PF00583.19    83 sp|P0A951|ATDA_ECOLI -            186   7.4e-15   54.7   0.1   1   1   5.9e-18   1.1e-14   54.1   0.1     2    82    63   140    62   141 0.97 Acetyltransferase (GNAT) family
Acetyltransf_4       PF13420.1    155 sp|P0A951|ATDA_ECOLI -            186   7.8e-15   55.1   0.6   1   1   5.3e-18   9.9e-15   54.8   0.6     1   152     9   158     9   160 0.93 Acetyltransferase (GNAT) domain
Acetyltransf_8       PF13523.1    152 sp|P0A951|ATDA_ECOLI -            186   1.3e-13   51.1   0.2   1   1   9.4e-17   1.7e-13   50.6   0.2     1   141     9   145     9   157 0.89 Acetyltransferase (GNAT) domain
Acetyltransf_7       PF13508.1     79 sp|P0A951|ATDA_ECOLI -            186     4e-07   30.1   0.2   1   1   3.9e-10   7.3e-07   29.2   0.2     2    78    56   141    55   142 0.80 Acetyltransferase (GNAT) domain
Acetyltransf_10      PF13673.1    117 sp|P0A951|ATDA_ECOLI -            186   1.3e-05   25.2   0.0   1   1   9.9e-09   1.8e-05   24.8   0.0     1   117    16   140    16   140 0.75 Acetyltransferase (GNAT) domain
FR47                 PF08445.5     86 sp|P0A951|ATDA_ECOLI -            186   2.3e-05   24.0   0.0   1   1   2.2e-08   4.1e-05   23.2   0.0    26    79    87   142    69   150 0.92 FR47-like protein
Acetyltransf_CG      PF14542.1     78 sp|P0A951|ATDA_ECOLI -            186      0.05   13.4   0.2   1   1   8.7e-05      0.16   11.8   0.0     2    50    60   110    59   111 0.73 GCN5-related N-acetyl-transferase
KdpA                 PF03814.10   552 sp|P03959|ATKA_ECOLI -            557  6.8e-245  813.2  31.3   1   1  5.3e-249  7.8e-245  813.0  31.3     1   552     9   557     9   557 0.99 Potassium-transporting ATPase A subunit
Hydrolase            PF00702.21   215 sp|P03960|ATKB_ECOLI -            682   7.8e-38  131.0   4.6   1   1   2.6e-41   7.8e-38  131.0   4.6     1   215   301   530   301   530 0.79 haloacid dehalogenase-like hydrolase
E1-E2_ATPase         PF00122.15   230 sp|P03960|ATKB_ECOLI -            682   1.3e-34  119.2   0.2   1   2   4.3e-38   1.3e-34  119.2   0.2     3   230    73   297    71   297 0.93 E1-E2 ATPase
HAD                  PF12710.2    192 sp|P03960|ATKB_ECOLI -            682   3.9e-14   53.2   0.0   1   1   3.1e-17   9.3e-14   52.0   0.0     2   191   305   526   304   527 0.66 haloacid dehalogenase-like hydrolase
Hydrolase_3          PF08282.7    254 sp|P03960|ATKB_ECOLI -            682   2.6e-05   23.9   1.1   2   2   5.7e-08   0.00017   21.2   0.3   193   241   501   549   497   556 0.90 haloacid dehalogenase-like hydrolase
Response_reg         PF00072.19   112 sp|P03960|ATKB_ECOLI -            682      0.09   12.7   0.0   1   1    0.0001       0.3   11.1   0.1    69   107   462   500   453   504 0.86 Response regulator receiver domain
KdpC                 PF02669.10   188 sp|P03961|ATKC_ECOLI -            190  9.3e-102  338.5   0.2   1   1  1.4e-105    1e-101  338.3   0.2     1   188     1   188     1   188 0.99 K+-transporting ATPase, c chain
Peptidase_M30        PF10460.4    366 sp|P03961|ATKC_ECOLI -            190     0.047   12.5   0.1   1   2   1.5e-05      0.11   11.3   0.0    50   106    18    70    12    91 0.80 Peptidase M30
DNA_binding_1        PF01035.15    85 sp|P0AFP2|ATL_ECOLI  -            129   3.2e-29  100.4   0.0   1   1   2.9e-33   4.3e-29  100.0   0.0     2    84    32   114    31   115 0.97 6-O-methylguanine DNA methyltransferase, DNA binding domain
E1-E2_ATPase         PF00122.15   230 sp|P0ABB8|ATMA_ECOLI -            898     9e-57  191.7   1.6   1   2   4.3e-60     9e-57  191.7   1.6     1   229   123   362   123   363 0.97 E1-E2 ATPase
Hydrolase            PF00702.21   215 sp|P0ABB8|ATMA_ECOLI -            898   8.2e-25   88.4   0.5   1   1   8.1e-28   1.7e-24   87.4   0.3     1   215   367   653   367   653 0.84 haloacid dehalogenase-like hydrolase
HAD                  PF12710.2    192 sp|P0ABB8|ATMA_ECOLI -            898     2e-16   60.7   0.1   1   1   1.9e-19   4.1e-16   59.7   0.1     2   192   371   650   370   650 0.77 haloacid dehalogenase-like hydrolase
Cation_ATPase_N      PF00690.21    69 sp|P0ABB8|ATMA_ECOLI -            898   1.6e-15   56.3   0.0   1   1   1.7e-18   3.6e-15   55.1   0.0     4    69    48   112    46   112 0.97 Cation transporter/ATPase, N-terminus
Cation_ATPase_C      PF00689.16   182 sp|P0ABB8|ATMA_ECOLI -            898   2.6e-14   53.1  12.8   2   2   1.2e-17   2.6e-14   53.1  12.8     2   180   723   888   722   890 0.93 Cation transporting ATPase, C-terminus
Hydrolase_like2      PF13246.1     91 sp|P0ABB8|ATMA_ECOLI -            898   6.8e-11   41.9   0.0   1   1     7e-14   1.5e-10   40.8   0.0    40    91   415   481   369   481 0.69 Putative hydrolase of sodium-potassium ATPase alpha subunit
Hydrolase_3          PF08282.7    254 sp|P0ABB8|ATMA_ECOLI -            898   0.00011   21.8   0.0   2   2   9.3e-06      0.02   14.4   0.0   205   242   636   673   623   677 0.86 haloacid dehalogenase-like hydrolase
Thiolase_N           PF00108.18   264 sp|P76461|ATOB_ECOLI -            394  2.3e-108  361.1   7.5   1   1    1e-111    3e-108  360.8   7.5     1   264     1   263     1   263 0.99 Thiolase, N-terminal domain
Thiolase_C           PF02803.13   123 sp|P76461|ATOB_ECOLI -            394   9.7e-54  180.0   1.4   2   2   3.3e-57   9.7e-54  180.0   1.4     1   123   270   392   270   392 0.99 Thiolase, C-terminal domain
ketoacyl-synt        PF00109.21   254 sp|P76461|ATOB_ECOLI -            394     0.014   14.8   1.7   2   3   4.7e-06     0.014   14.8   1.7   171   206    83   118    78   132 0.89 Beta-ketoacyl synthase, N-terminal domain
ACP_syn_III          PF08545.5     80 sp|P76461|ATOB_ECOLI -            394     0.026   14.1   2.9   1   2     3e-05     0.089   12.4   0.1     1    39    82   120    82   139 0.79 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
ACP_syn_III_C        PF08541.5     90 sp|P76461|ATOB_ECOLI -            394     0.051   13.5   0.4   1   1   6.5e-05      0.19   11.7   0.4     1    82   301   387   301   392 0.79 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
CoA_trans            PF01144.18   217 sp|P76458|ATOD_ECOLI -            220   6.4e-71  237.9   0.2   1   1   9.7e-75   7.2e-71  237.8   0.2     2   216     6   215     5   216 0.99 Coenzyme A transferase
AcetylCoA_hydro      PF02550.10   198 sp|P76458|ATOD_ECOLI -            220     0.093   12.4   0.0   1   1   2.8e-05      0.21   11.3   0.0    13    45     9    41     2    83 0.89 Acetyl-CoA hydrolase/transferase N-terminal domain
CoA_trans            PF01144.18   217 sp|P76459|ATOA_ECOLI -            216   8.6e-44  149.2   0.2   1   1     2e-47   9.8e-44  149.1   0.2     2   214     5   195     4   198 0.96 Coenzyme A transferase
AcetylCoA_hyd_C      PF13336.1    154 sp|P76459|ATOA_ECOLI -            216    0.0001   21.9   0.0   1   1   3.3e-08   0.00016   21.3   0.0    42   121   101   171    94   182 0.88 Acetyl-CoA hydrolase/transferase C-terminal domain
DeoRC                PF00455.17   162 sp|P76459|ATOA_ECOLI -            216    0.0052   16.4   0.0   1   2   2.5e-06     0.012   15.2   0.0     5    45     2    41     1   111 0.88 DeoR C terminal sensor domain
ATP-synt_A           PF00119.15   215 sp|P0AB98|ATP6_ECOLI -            271   1.8e-64  217.1  20.5   1   1   2.8e-68   2.1e-64  216.9  20.5     1   214    39   265    39   266 0.97 ATP synthase A chain
ATP-synt_ab          PF00006.20   215 sp|P0ABB0|ATPA_ECOLI -            513   2.9e-72  242.6   0.1   1   1   2.1e-75   5.1e-72  241.8   0.1     1   215   148   375   148   375 0.99 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_C        PF00306.22   113 sp|P0ABB0|ATPA_ECOLI -            513   1.4e-18   67.4   1.3   1   1   1.1e-21   2.8e-18   66.4   1.3     1    95   387   468   387   488 0.87 ATP synthase alpha/beta chain, C terminal domain
ATP-synt_ab_N        PF02874.18    69 sp|P0ABB0|ATPA_ECOLI -            513   3.1e-14   52.9   0.1   1   1   2.6e-17   6.5e-14   51.8   0.1     5    69    28    92    25    92 0.98 ATP synthase alpha/beta family, beta-barrel domain
HAS-barrel           PF09378.5     91 sp|P0ABB0|ATPA_ECOLI -            513   1.4e-06   28.1   0.1   1   2   4.2e-09     1e-05   25.3   0.0     6    84    29    89    25   109 0.85 HAS barrel domain
KaiC                 PF06745.8    227 sp|P0ABB0|ATPA_ECOLI -            513   7.1e-05   22.0   0.0   1   1     5e-08   0.00012   21.2   0.0     1    71   146   213   146   248 0.85 KaiC
Arch_ATPase          PF01637.13   234 sp|P0ABB0|ATPA_ECOLI -            513    0.0046   16.6   0.0   1   1   3.4e-06    0.0084   15.8   0.0    23   131   165   267   151   293 0.74 Archaeal ATPase
ATP-synt_ab          PF00006.20   215 sp|P0ABB4|ATPB_ECOLI -            460   2.3e-64  216.8   0.0   1   1   8.8e-68   3.3e-64  216.3   0.0     1   215   129   342   129   342 0.97 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_C        PF00306.22   113 sp|P0ABB4|ATPB_ECOLI -            460   2.5e-27   95.6   0.1   1   1   1.2e-30   4.6e-27   94.7   0.1     2   108   356   457   355   460 0.94 ATP synthase alpha/beta chain, C terminal domain
ATP-synt_ab_N        PF02874.18    69 sp|P0ABB4|ATPB_ECOLI -            460   3.6e-22   78.3   2.5   1   1   2.1e-25   7.7e-22   77.2   2.5     1    68     6    72     6    73 0.97 ATP synthase alpha/beta family, beta-barrel domain
AAA_25               PF13481.1    194 sp|P0ABB4|ATPB_ECOLI -            460     0.033   13.5   0.0   1   1   1.6e-05     0.058   12.7   0.0    14    99   126   212   113   257 0.65 AAA domain
OSCP                 PF00213.13   172 sp|P0ABA4|ATPD_ECOLI -            177   9.2e-51  172.1   1.0   1   1   1.4e-54     1e-50  171.9   1.0     1   171     7   174     7   175 0.97 ATP synthase delta (OSCP) subunit
MutS_III             PF05192.13   204 sp|P0ABA4|ATPD_ECOLI -            177      0.11   12.3   0.4   1   1   2.5e-05      0.18   11.5   0.4   124   203    42   116     8   117 0.61 MutS domain III
ATP-synt_DE_N        PF02823.11    80 sp|P0A6E6|ATPE_ECOLI -            139   2.1e-30  104.2   0.1   1   1   4.2e-34   3.1e-30  103.7   0.1     2    80     6    84     5    84 0.99 ATP synthase, Delta/Epsilon chain, beta-sandwich domain
ATP-synt_DE          PF00401.15    48 sp|P0A6E6|ATPE_ECOLI -            139   1.8e-16   59.7   5.1   1   1   3.8e-20   2.8e-16   59.1   5.1     1    47    88   134    88   135 0.97 ATP synthase, Delta/Epsilon chain, long alpha-helix domain
ATP-synt_B           PF00430.13   132 sp|P0ABA0|ATPF_ECOLI -            156   3.6e-35  120.6  18.3   1   1   2.6e-38   4.2e-35  120.4  18.3     1   132     6   137     6   137 0.98 ATP synthase B/B' CF(0)
T2SM                 PF04612.7    160 sp|P0ABA0|ATPF_ECOLI -            156    0.0096   15.7   1.8   1   2   5.8e-06    0.0096   15.7   1.8    21    92    11    80     7    96 0.82 Type II secretion system (T2SS), protein M
Mt_ATP-synt_B        PF05405.9    163 sp|P0ABA0|ATPF_ECOLI -            156     0.025   14.0   6.1   1   1   5.1e-05     0.084   12.3   6.1    20   113    11   107     8   142 0.72 Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
V-ATPase_G           PF03179.10   105 sp|P0ABA0|ATPF_ECOLI -            156     0.045   14.0  25.8   2   2   4.3e-05     0.072   13.4  22.6     5    96    61   151    57   155 0.80 Vacuolar (H+)-ATPase G subunit
OmpH                 PF03938.9    158 sp|P0ABA0|ATPF_ECOLI -            156      0.75    9.7  17.0   1   1   0.00058      0.96    9.3  17.0    33   124    29   126    27   156 0.66 Outer membrane protein (OmpH-like)
RNA_pol_Rpb2_45      PF10385.4     66 sp|P0ABA0|ATPF_ECOLI -            156       4.8    7.0   8.0   2   2   0.00055      0.91    9.3   2.0    18    42    94   118    92   140 0.90 RNA polymerase beta subunit external 1 domain
ATP-synt             PF00231.14   290 sp|P0ABA6|ATPG_ECOLI -            287  2.5e-109  365.1   0.0   1   1  1.9e-113  2.8e-109  364.9   0.0     2   290     3   287     2   287 0.98 ATP synthase
ATP-synt_C           PF00137.16    66 sp|P68699|ATPL_ECOLI -             79   1.1e-16   60.5  13.8   1   1   1.6e-20   1.2e-16   60.3  13.8     2    66     9    77     8    77 0.98 ATP synthase subunit C
HlyIII               PF03006.15   222 sp|P68699|ATPL_ECOLI -             79     0.013   14.9   0.7   1   1   2.1e-06     0.015   14.6   0.7   108   162     8    73     1    78 0.67 Haemolysin-III related
ATP_synt_I           PF03899.10   100 sp|P0ABC0|ATPZ_ECOLI -            126   4.3e-14   52.4  13.1   1   1   1.2e-17   5.9e-14   52.0  13.1     1    99    13   108    13   109 0.95 ATP synthase I chain
DUF4013              PF13197.1    169 sp|P0ABC0|ATPZ_ECOLI -            126      0.17   11.2  13.7   1   1   4.9e-05      0.24   10.7  13.7    72   167    19   111    10   122 0.69 Protein of unknown function (DUF4013)
DUF1673              PF07895.6    205 sp|P0ABC0|ATPZ_ECOLI -            126      0.23   10.9   5.0   1   1   6.2e-05      0.31   10.5   5.0    57   147    12   107     2   118 0.73 Protein of unknown function (DUF1673)
E1-E2_ATPase         PF00122.15   230 sp|P37617|ATZN_ECOLI -            732   2.2e-47  161.0   0.0   1   1   1.6e-50   4.8e-47  159.9   0.0     1   230   205   426   205   426 0.98 E1-E2 ATPase
Hydrolase            PF00702.21   215 sp|P37617|ATZN_ECOLI -            732   4.7e-38  131.7   7.5   1   1   2.9e-41   8.6e-38  130.8   7.5     3   214   432   639   430   640 0.88 haloacid dehalogenase-like hydrolase
HAD                  PF12710.2    192 sp|P37617|ATZN_ECOLI -            732   3.5e-13   50.1   0.0   1   1   2.4e-16   7.2e-13   49.1   0.0     1   192   433   637   433   637 0.67 haloacid dehalogenase-like hydrolase
HMA                  PF00403.21    62 sp|P37617|ATZN_ECOLI -            732   1.2e-12   47.8   0.1   1   1   8.1e-16   2.4e-12   46.8   0.1     3    61    53   109    52   110 0.95 Heavy-metal-associated domain
Hydrolase_3          PF08282.7    254 sp|P37617|ATZN_ECOLI -            732   1.8e-07   31.0   1.2   2   2   2.1e-09   6.2e-06   25.9   0.9   187   254   610   672   608   672 0.85 haloacid dehalogenase-like hydrolase
Aminotran_1_2        PF00155.16   363 sp|P09053|AVTA_ECOLI -            417   7.3e-22   77.8   0.0   1   1   7.5e-25   2.8e-21   75.9   0.0   126   348   165   391    33   405 0.77 Aminotransferase class I and II
Beta_elim_lyase      PF01212.16   290 sp|P09053|AVTA_ECOLI -            417   0.00038   19.6   0.0   1   1   1.5e-07   0.00057   19.1   0.0   123   166   178   220   165   326 0.91 Beta-eliminating lyase
Cys_Met_Meta_PP      PF01053.15   386 sp|P09053|AVTA_ECOLI -            417     0.063   11.5   0.0   1   1   2.6e-05     0.097   10.9   0.0   136   183   175   224   167   231 0.83 Cys/Met metabolism PLP-dependent enzyme
Aminotran_MocR       PF12897.2    425 sp|P09053|AVTA_ECOLI -            417       0.1   11.1   0.0   1   1   8.7e-05      0.32    9.4   0.0   175   381   181   375   176   416 0.68 Alanine-glyoxylate amino-transferase
Flavodoxin_2         PF02525.12   199 sp|P41407|AZOR_ECOLI -            201   5.5e-48  163.1   0.0   1   1   8.4e-52   6.2e-48  162.9   0.0     2   195     3   195     2   199 0.91 Flavodoxin-like fold
FMN_red              PF03358.10   152 sp|P41407|AZOR_ECOLI -            201   2.6e-12   46.4   0.0   1   1   4.6e-16   3.4e-12   46.1   0.0     2   148     3   174     2   178 0.78 NADPH-dependent FMN reductase
Bac_surface_Ag       PF01103.18   323 sp|P0A940|BAMA_ECOLI -            810  1.9e-100  336.4  16.0   1   1  1.1e-103    4e-100  335.4  16.0     1   323   448   810   448   810 0.96 Surface antigen
Surf_Ag_VNR          PF07244.10    78 sp|P0A940|BAMA_ECOLI -            810   3.3e-65  216.4  10.4   1   5   6.3e-10   2.3e-06   27.8   0.0     1    78    24    91    24    91 0.87 Surface antigen variable number repeat
Surf_Ag_VNR          PF07244.10    78 sp|P0A940|BAMA_ECOLI -            810   3.3e-65  216.4  10.4   2   5   5.9e-15   2.2e-11   44.0   0.1     1    78    92   172    92   172 0.93 Surface antigen variable number repeat
Surf_Ag_VNR          PF07244.10    78 sp|P0A940|BAMA_ECOLI -            810   3.3e-65  216.4  10.4   3   5   3.5e-17   1.3e-13   51.1   0.1     2    78   176   263   175   263 0.86 Surface antigen variable number repeat
Surf_Ag_VNR          PF07244.10    78 sp|P0A940|BAMA_ECOLI -            810   3.3e-65  216.4  10.4   4   5   5.8e-14   2.2e-10   40.8   0.1     1    78   266   344   266   344 0.92 Surface antigen variable number repeat
Surf_Ag_VNR          PF07244.10    78 sp|P0A940|BAMA_ECOLI -            810   3.3e-65  216.4  10.4   5   5     1e-18   3.8e-15   56.0   0.1     1    78   347   421   347   421 0.91 Surface antigen variable number repeat
POTRA_1              PF08478.5     69 sp|P0A940|BAMA_ECOLI -            810     2e-08   34.1   0.1   3   5   7.3e-05      0.27   11.2   0.0     3    34   177   208   175   233 0.89 POTRA domain, FtsQ-type
POTRA_2              PF08479.6     76 sp|P0A940|BAMA_ECOLI -            810   3.9e-05   23.2   1.0   5   6   0.00013      0.48   10.1   0.0     2    73   267   339   266   341 0.95 POTRA domain, ShlB-type
PQQ_2                PF13360.1    238 sp|P77774|BAMB_ECOLI -            392   1.8e-62  210.9  20.0   1   3   1.8e-09   6.9e-06   25.7   0.1    14    75    45   112    31   115 0.81 PQQ-like domain
PQQ_2                PF13360.1    238 sp|P77774|BAMB_ECOLI -            392   1.8e-62  210.9  20.0   2   3   2.3e-56   8.7e-53  179.2   9.8     2   238    78   319    77   319 0.95 PQQ-like domain
PQQ_2                PF13360.1    238 sp|P77774|BAMB_ECOLI -            392   1.8e-62  210.9  20.0   3   3   5.7e-10   2.1e-06   27.3   0.3     2    91   302   390   301   392 0.92 PQQ-like domain
PQQ_3                PF13570.1     40 sp|P77774|BAMB_ECOLI -            392   3.5e-38  128.7  18.7   1   8     2e-05     0.076   13.3   0.5     4    40    47    88    45    88 0.81 PQQ-like domain
PQQ_3                PF13570.1     40 sp|P77774|BAMB_ECOLI -            392   3.5e-38  128.7  18.7   2   8     5e-10   1.9e-06   27.9   0.1     1    39    89   137    89   138 0.87 PQQ-like domain
PQQ_3                PF13570.1     40 sp|P77774|BAMB_ECOLI -            392   3.5e-38  128.7  18.7   3   8   1.1e-09   4.2e-06   26.8   0.0     1    38   139   176   139   178 0.95 PQQ-like domain
PQQ_3                PF13570.1     40 sp|P77774|BAMB_ECOLI -            392   3.5e-38  128.7  18.7   5   8   9.3e-09   3.5e-05   23.9   0.0     1    40   224   274   224   274 0.77 PQQ-like domain
PQQ_3                PF13570.1     40 sp|P77774|BAMB_ECOLI -            392   3.5e-38  128.7  18.7   6   8   0.00018      0.65   10.3   0.0     1    36   275   308   275   311 0.88 PQQ-like domain
PQQ_3                PF13570.1     40 sp|P77774|BAMB_ECOLI -            392   3.5e-38  128.7  18.7   7   8   1.5e-05     0.057   13.7   0.1     3    40   315   353   313   353 0.86 PQQ-like domain
PQQ                  PF01011.16    38 sp|P77774|BAMB_ECOLI -            392   1.1e-33  113.1   2.5   1   6   8.2e-09     3e-05   23.3   0.1     1    35    70   104    70   107 0.90 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|P77774|BAMB_ECOLI -            392   1.1e-33  113.1   2.5   2   6   2.3e-08   8.5e-05   21.8   0.0     1    37   120   156   120   157 0.94 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|P77774|BAMB_ECOLI -            392   1.1e-33  113.1   2.5   3   6   9.2e-08   0.00034   19.9   0.0     1    34   160   193   160   195 0.90 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|P77774|BAMB_ECOLI -            392   1.1e-33  113.1   2.5   4   6   2.8e-06      0.01   15.3   0.0     2    35   206   239   205   242 0.89 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|P77774|BAMB_ECOLI -            392   1.1e-33  113.1   2.5   5   6   1.9e-09   7.1e-06   25.2   0.0     1    32   256   287   256   292 0.92 PQQ enzyme repeat
TGT_C2               PF14810.1     74 sp|P77774|BAMB_ECOLI -            392     0.096   12.5   0.0   1   1   0.00012      0.45   10.3   0.0    30    66   280   316   267   321 0.86 Patch-forming domain C2 of tRNA-guanine transglycosylase
Lipoprotein_18       PF06804.6    303 sp|P0A903|BAMC_ECOLI -            344  1.6e-137  457.3   1.4   1   1  3.7e-141  1.8e-137  457.0   1.4     1   303    40   343    40   343 0.99 NlpB/DapX lipoprotein
Big_3                PF07523.7     67 sp|P0A903|BAMC_ECOLI -            344     0.019   15.0   0.3   1   2   7.6e-05      0.38   10.8   0.1    15    66   125   177   123   178 0.91 Bacterial Ig-like domain (group 3)
YfiO                 PF13525.1    203 sp|P0AC02|BAMD_ECOLI -            245   1.2e-84  282.8   5.8   1   1   7.4e-88   1.4e-84  282.6   5.8     1   202    28   236    28   238 0.97 Outer membrane lipoprotein
TPR_18               PF13512.1    142 sp|P0AC02|BAMD_ECOLI -            245   5.5e-65  217.7   7.3   1   2     8e-68   1.5e-64  216.3   1.7     2   142    24   167    23   167 0.98 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P0AC02|BAMD_ECOLI -            245    0.0001   22.8   5.4   1   2   6.1e-08   0.00011   22.7   1.5     1    65    36   103    36   103 0.91 Tetratricopeptide repeat
TPR_6                PF13174.1     33 sp|P0AC02|BAMD_ECOLI -            245   0.00012   22.3   9.7   1   4   0.00012      0.23   11.9   0.2     6    31    36    63    35    64 0.86 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|P0AC02|BAMD_ECOLI -            245   0.00014   22.1   6.4   2   4   0.00048      0.89   10.3   0.1     3    36    71   104    69   112 0.89 Tetratricopeptide repeat
TPR_11               PF13414.1     69 sp|P0AC02|BAMD_ECOLI -            245    0.0018   17.8   2.0   2   2   3.3e-05     0.061   12.9   0.1    11    53    77   121    70   127 0.89 TPR repeat
TPR_19               PF14559.1     68 sp|P0AC02|BAMD_ECOLI -            245     0.011   16.1   3.8   1   2   3.5e-05     0.065   13.5   0.4     2    61    43   105    27   109 0.93 Tetratricopeptide repeat
TPR_21               PF09976.4    145 sp|P0AC02|BAMD_ECOLI -            245     0.015   15.2   3.4   1   3   2.6e-05     0.049   13.5   0.1    13    84    34   106    29   125 0.86 Tetratricopeptide repeat
SmpA_OmlA            PF04355.8     71 sp|P0A937|BAME_ECOLI -            113   6.2e-27   93.0   0.3   1   1   1.5e-30   7.6e-27   92.7   0.3     1    70    35   104    35   105 0.98 SmpA / OmlA family
FlaE                 PF07559.9    130 sp|P0A937|BAME_ECOLI -            113     0.014   16.0   0.1   1   1   3.5e-06     0.017   15.7   0.1    33    81    56   102    35   112 0.72 Flagellar basal body protein FlaE
DUF3085              PF11284.3     90 sp|P0A937|BAME_ECOLI -            113      0.15   12.2   0.0   1   1   4.8e-05      0.24   11.6   0.0     8    56    33    85    32   103 0.84 Protein of unknown function (DUF3085)
MFS_1                PF07690.11   352 sp|P28246|BCR_ECOLI  -            396     3e-45  154.4  55.1   1   2     1e-48     3e-45  154.4  55.1     2   351    16   358    15   359 0.87 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P28246|BCR_ECOLI  -            396   9.7e-12   44.1  15.3   1   2   3.3e-15   9.7e-12   44.1  15.3    48   191    47   184    34   189 0.94 Sugar (and other) transporter
TRI12                PF06609.8    599 sp|P28246|BCR_ECOLI  -            396   1.7e-06   26.5   6.8   1   2   5.6e-10   1.7e-06   26.5   6.8    64   215    30   183     2   202 0.71 Fungal trichothecene efflux pump (TRI12)
DBI_PRT              PF02277.12   327 sp|P28246|BCR_ECOLI  -            396     0.023   13.8   0.7   1   1   7.6e-06     0.023   13.8   0.7   236   267    72   103    59   125 0.78 Phosphoribosyltransferase
MFS_2                PF13347.1    428 sp|P28246|BCR_ECOLI  -            396      0.82    7.9  48.5   2   3   1.6e-06    0.0047   15.3  29.1   146   343   134   331   129   370 0.69 MFS/sugar transport protein
AhpC-TSA             PF00578.16   124 sp|P0AE52|BCP_ECOLI  -            156   5.7e-40  135.8   0.0   1   1   3.4e-43   7.2e-40  135.5   0.0     2   123     7   134     6   135 0.99 AhpC/TSA family
Redoxin              PF08534.5    146 sp|P0AE52|BCP_ECOLI  -            156   2.2e-27   95.4   0.0   1   1   1.3e-30   2.7e-27   95.1   0.0     1   131     5   136     5   148 0.90 Redoxin
SCO1-SenC            PF02630.9    174 sp|P0AE52|BCP_ECOLI  -            156   3.6e-10   39.7   0.0   1   1   2.4e-13   5.1e-10   39.2   0.0    32   171    10   136     4   140 0.89 SCO1/SenC
AhpC-TSA_2           PF13911.1    115 sp|P0AE52|BCP_ECOLI  -            156   4.5e-05   23.3   0.0   1   1   5.5e-08   0.00012   22.0   0.0     2    56    53   107    52   123 0.89 AhpC/TSA antioxidant enzyme
DUF899               PF05988.7    211 sp|P0AE52|BCP_ECOLI  -            156   0.00026   20.4   0.0   1   1   1.4e-07   0.00029   20.3   0.0    48   173    12   137     3   152 0.81 Bacterial protein of unknown function (DUF899)
GSHPx                PF00255.14   108 sp|P0AE52|BCP_ECOLI  -            156    0.0051   16.1   0.0   1   1   3.6e-06    0.0076   15.6   0.0     4    98    13   108    11   114 0.82 Glutathione peroxidase
DUF4174              PF13778.1    118 sp|P0AE52|BCP_ECOLI  -            156       0.1   12.7   0.0   1   1   8.9e-05      0.19   11.8   0.0     9    82    30    99    23   100 0.89 Domain of unknown function (DUF4174)
Glyco_tranf_2_3      PF13641.1    228 sp|P37653|BCSA_ECOLI -            872   3.1e-33  115.4   0.0   1   1   2.5e-36   4.7e-33  114.9   0.0     1   228   273   500   273   500 0.87 Glycosyltransferase like family 2
Glycos_transf_2      PF00535.21   169 sp|P37653|BCSA_ECOLI -            872     5e-30  104.3   0.0   1   1   4.3e-33     8e-30  103.7   0.0     1   169   276   447   276   447 0.98 Glycosyl transferase family 2
Glyco_trans_2_3      PF13632.1    193 sp|P37653|BCSA_ECOLI -            872   4.2e-19   69.0   1.2   1   1   2.3e-22   4.2e-19   69.0   1.2     2   189   356   562   355   572 0.70 Glycosyl transferase family group 2
Cellulose_synt       PF03552.9    722 sp|P37653|BCSA_ECOLI -            872   1.1e-16   60.3   6.6   1   3   0.00013      0.25    9.6   0.0     1    44   275   315   275   325 0.87 Cellulose synthase
Cellulose_synt       PF03552.9    722 sp|P37653|BCSA_ECOLI -            872   1.1e-16   60.3   6.6   3   3   3.8e-16   7.1e-13   47.7   2.6   414   651   445   662   434   684 0.76 Cellulose synthase
PilZ                 PF07238.9    102 sp|P37653|BCSA_ECOLI -            872   5.3e-15   55.2   0.1   1   1   5.3e-18   9.7e-15   54.4   0.1     1   101   694   790   694   791 0.95 PilZ domain
Glyco_transf_21      PF13506.1    175 sp|P37653|BCSA_ECOLI -            872   4.4e-13   48.8   0.0   1   1   4.2e-16   7.8e-13   48.0   0.0    12   175   334   499   325   499 0.87 Glycosyl transferase family 21
Glyco_tranf_2_2      PF10111.4    281 sp|P37653|BCSA_ECOLI -            872   2.7e-06   26.6   0.0   1   1   2.2e-09     4e-06   26.1   0.0    32   185   303   448   277   474 0.84 Glycosyltransferase like family 2
BcsB                 PF03170.8    605 sp|P37652|BCSB_ECOLI -            779  9.5e-224  743.9   1.4   1   1  7.7e-228  1.1e-223  743.6   1.4     4   605    68   681    65   681 0.99 Bacterial cellulose synthase subunit
BCSC_C               PF05420.6    342 sp|P37650|BCSC_ECOLI -           1157  3.1e-124  414.5  11.9   1   1  8.8e-127  5.9e-124  413.6  11.9     2   341   802  1139   801  1140 0.97 Cellulose synthase operon protein C C-terminus (BCSC_C)
TPR_19               PF14559.1     68 sp|P37650|BCSC_ECOLI -           1157   2.6e-32  110.9  54.8   1  10   3.3e-07   0.00022   21.4   0.2    20    63    57   100    31   103 0.84 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P37650|BCSC_ECOLI -           1157   2.6e-32  110.9  54.8   2  10   0.00011     0.076   13.3   0.1     9    56   165   212   162   219 0.93 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P37650|BCSC_ECOLI -           1157   2.6e-32  110.9  54.8   3  10   7.9e-10   5.3e-07   29.8   1.3     2    64   280   345   279   347 0.90 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P37650|BCSC_ECOLI -           1157   2.6e-32  110.9  54.8   4  10   1.4e-07   9.6e-05   22.6   0.4     1    63   361   424   361   428 0.90 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P37650|BCSC_ECOLI -           1157   2.6e-32  110.9  54.8   5  10   4.9e-05     0.033   14.5   0.4     1    55   395   448   395   456 0.87 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P37650|BCSC_ECOLI -           1157   2.6e-32  110.9  54.8   6  10   0.00014     0.097   13.0   2.1     4    60   474   530   471   535 0.94 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P37650|BCSC_ECOLI -           1157   2.6e-32  110.9  54.8   8  10   1.9e-08   1.3e-05   25.4   7.3     5    67   617   683   613   684 0.88 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P37650|BCSC_ECOLI -           1157   9.2e-29   99.4  69.7   1  11   0.00042      0.28   11.9   0.9     2    51    67   116    66   143 0.68 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P37650|BCSC_ECOLI -           1157   9.2e-29   99.4  69.7   4  11   2.2e-11   1.5e-08   35.1   3.9     2    64   274   336   273   337 0.96 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P37650|BCSC_ECOLI -           1157   9.2e-29   99.4  69.7   5  11     8e-12   5.4e-09   36.4   2.2     2    64   356   418   355   419 0.95 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P37650|BCSC_ECOLI -           1157   9.2e-29   99.4  69.7   6  11   3.6e-07   0.00024   21.6   0.6     2    55   390   445   389   454 0.81 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P37650|BCSC_ECOLI -           1157   9.2e-29   99.4  69.7   7  11   2.4e-05     0.016   15.8   2.9     2    50   466   514   465   529 0.86 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P37650|BCSC_ECOLI -           1157   9.2e-29   99.4  69.7   8  11   9.5e-08   6.4e-05   23.5   6.4     7    56   613   662   607   672 0.86 Tetratricopeptide repeat
TPR_11               PF13414.1     69 sp|P37650|BCSC_ECOLI -           1157   1.6e-23   82.1  38.4   3   9   2.3e-13   1.6e-10   40.5   0.8     2    69   268   334   267   334 0.96 TPR repeat
TPR_11               PF13414.1     69 sp|P37650|BCSC_ECOLI -           1157   1.6e-23   82.1  38.4   5   9     1e-08   6.9e-06   25.6   0.3     5    59   387   439   383   463 0.79 TPR repeat
TPR_11               PF13414.1     69 sp|P37650|BCSC_ECOLI -           1157   1.6e-23   82.1  38.4   6   9   0.00023      0.15   11.7   0.4     6    56   464   513   462   521 0.90 TPR repeat
TPR_14               PF13428.1     44 sp|P37650|BCSC_ECOLI -           1157   7.6e-18   63.4  68.1   1  13   0.00037      0.25   12.0   0.1     3    34    64    95    62   100 0.88 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|P37650|BCSC_ECOLI -           1157   7.6e-18   63.4  68.1   4  13   1.4e-05    0.0094   16.5   1.0     6    44   274   312   266   312 0.84 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|P37650|BCSC_ECOLI -           1157   7.6e-18   63.4  68.1   5  13   8.8e-06    0.0059   17.1   0.4     2    34   304   336   303   340 0.94 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|P37650|BCSC_ECOLI -           1157   7.6e-18   63.4  68.1   6  13   0.00073      0.49   11.1   0.3     6    43   356   393   352   394 0.83 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|P37650|BCSC_ECOLI -           1157   7.6e-18   63.4  68.1   7  13   0.00077      0.52   11.0   0.1     3    42   387   426   385   428 0.93 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|P37650|BCSC_ECOLI -           1157   7.6e-18   63.4  68.1   8  13   0.00043      0.29   11.8   3.3     4    43   464   503   462   505 0.91 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|P37650|BCSC_ECOLI -           1157   7.6e-18   63.4  68.1  11  13    0.0011      0.76   10.5   2.4     5    42   607   644   603   646 0.91 Tetratricopeptide repeat
TPR_2                PF07719.12    34 sp|P37650|BCSC_ECOLI -           1157   1.6e-16   58.7  33.9   3   8   8.9e-08     6e-05   22.6   0.2     2    33   304   335   303   336 0.95 Tetratricopeptide repeat
TPR_2                PF07719.12    34 sp|P37650|BCSC_ECOLI -           1157   1.6e-16   58.7  33.9   4   8   0.00048      0.32   11.0   0.1     6    33   356   383   353   384 0.88 Tetratricopeptide repeat
TPR_2                PF07719.12    34 sp|P37650|BCSC_ECOLI -           1157   1.6e-16   58.7  33.9   5   8   0.00017      0.11   12.4   0.1     6    33   390   417   386   418 0.90 Tetratricopeptide repeat
TPR_7                PF13176.1     36 sp|P37650|BCSC_ECOLI -           1157   2.2e-12   45.7  17.4   1   6   9.6e-07   0.00065   19.3   0.1     1    32   305   334   305   341 0.85 Tetratricopeptide repeat
TPR_12               PF13424.1     78 sp|P37650|BCSC_ECOLI -           1157   5.5e-11   42.2  35.1   3   8   3.7e-05     0.025   14.4   0.2    24    76   288   333   275   335 0.78 Tetratricopeptide repeat
TPR_12               PF13424.1     78 sp|P37650|BCSC_ECOLI -           1157   5.5e-11   42.2  35.1   4   8   8.4e-07   0.00056   19.7   0.4    12    76   358   415   349   417 0.87 Tetratricopeptide repeat
TPR_12               PF13424.1     78 sp|P37650|BCSC_ECOLI -           1157   5.5e-11   42.2  35.1   8   8   3.3e-05     0.022   14.6   0.0     6    73   672   738   666   739 0.91 Tetratricopeptide repeat
TPR_8                PF13181.1     34 sp|P37650|BCSC_ECOLI -           1157   1.7e-10   39.8  13.1   3   5   8.5e-08   5.7e-05   22.6   0.1     2    32   304   334   303   337 0.93 Tetratricopeptide repeat
TPR_1                PF00515.23    34 sp|P37650|BCSC_ECOLI -           1157   8.6e-09   34.6  21.3   1   4   1.3e-07   8.5e-05   21.9   0.1     2    33   304   335   303   336 0.95 Tetratricopeptide repeat
TPR_1                PF00515.23    34 sp|P37650|BCSC_ECOLI -           1157   8.6e-09   34.6  21.3   3   4   0.00019      0.13   11.9   0.1     6    33   390   417   386   418 0.91 Tetratricopeptide repeat
TPR_20               PF14561.1     90 sp|P37650|BCSC_ECOLI -           1157   1.6e-06   28.1  34.7   3   6   2.6e-07   0.00017   21.6   0.9     6    67   287   348   284   365 0.89 Tetratricopeptide repeat
TPR_17               PF13431.1     34 sp|P37650|BCSC_ECOLI -           1157     1e-05   25.3  18.4   3   5     2e-05     0.013   15.6   0.1     2    32   292   322   291   324 0.90 Tetratricopeptide repeat
RPN7                 PF10602.4    177 sp|P37650|BCSC_ECOLI -           1157   0.00021   20.7   0.1   1   3   0.00018      0.12   11.7   0.0    38   134   305   406   300   455 0.70 26S proteasome subunit RPN7
TPR_15               PF13429.1    280 sp|P37650|BCSC_ECOLI -           1157   0.00041   19.5  51.5   3   7    0.0009      0.61    9.0   0.8   142   181   298   338   287   364 0.80 Tetratricopeptide repeat
TPR_15               PF13429.1    280 sp|P37650|BCSC_ECOLI -           1157   0.00041   19.5  51.5   6   7   4.8e-05     0.033   13.2   8.0   117   246   571   703   562   708 0.84 Tetratricopeptide repeat
BTAD                 PF03704.12   146 sp|P37650|BCSC_ECOLI -           1157     0.015   15.5   0.5   2   4   2.3e-05     0.015   15.5   0.5    47   117   255   324   234   332 0.81 Bacterial transcriptional activator domain
PDGF_N               PF04692.8     78 sp|P37650|BCSC_ECOLI -           1157       0.1   13.0   0.3   1   1   0.00054      0.37   11.3   0.3     8    42   439   473   433   491 0.82 Platelet-derived growth factor, N terminal region
Apc3                 PF12895.2     84 sp|P37650|BCSC_ECOLI -           1157      0.81    9.8  13.3   1   2   0.00033      0.22   11.6   0.4     3    82   317   409   315   411 0.81 Anaphase-promoting complex, cyclosome, subunit 3
YhjQ                 PF06564.7    244 sp|P37655|BCSQ_ECOLI -            250  8.1e-127  421.6   4.8   1   1  3.3e-130  9.8e-127  421.3   4.8     1   241     1   241     1   244 0.99 YhjQ protein
AAA_31               PF13614.1    157 sp|P37655|BCSQ_ECOLI -            250   4.3e-08   33.2   0.0   1   1   6.9e-11   2.1e-07   31.0   0.0     2   149     3   148     2   152 0.74 AAA domain
CbiA                 PF01656.18   195 sp|P37655|BCSQ_ECOLI -            250   2.5e-07   30.3   0.0   1   1   1.1e-10   3.2e-07   29.9   0.0     5   161     8   176     4   207 0.66 CobQ/CobB/MinD/ParA nucleotide binding domain
ArsA_ATPase          PF02374.10   305 sp|P37655|BCSQ_ECOLI -            250   7.2e-06   25.2   0.0   1   1   4.1e-09   1.2e-05   24.5   0.0     9    54    10    55     2    61 0.93 Anion-transporting ATPase
adh_short            PF00106.20   167 sp|P39333|BDCA_ECOLI -            237   2.1e-26   92.8   3.2   1   1   1.4e-29     3e-26   92.3   3.2     1   165     7   163     7   165 0.85 short chain dehydrogenase
adh_short_C2         PF13561.1    241 sp|P39333|BDCA_ECOLI -            237   3.9e-25   89.0   0.0   1   1   2.3e-28   4.8e-25   88.7   0.0     5   238    15   233    13   236 0.89 Enoyl-(Acyl carrier protein) reductase
Epimerase            PF01370.16   236 sp|P39333|BDCA_ECOLI -            237    0.0005   19.5   0.3   1   1     1e-06    0.0022   17.4   0.3     1    90     9   100     9   176 0.68 NAD dependent epimerase/dehydratase family
KR                   PF08659.5    181 sp|P39333|BDCA_ECOLI -            237    0.0018   17.9   2.3   1   1   1.6e-06    0.0034   17.0   2.3     2   166     8   163     7   175 0.76 KR domain
Eno-Rase_NADH_b      PF12242.3     78 sp|P39333|BDCA_ECOLI -            237    0.0048   16.6   5.6   1   3   7.6e-06     0.016   14.9   0.4    37    66     5    31     1    42 0.77 NAD(P)H binding domain of trans-2-enoyl-CoA reductase
F420_oxidored        PF03807.12    96 sp|P39333|BDCA_ECOLI -            237     0.011   16.1   0.2   1   1   1.8e-05     0.038   14.4   0.2     4    56    11    61     8    76 0.81 NADP oxidoreductase coenzyme F420-dependent
NmrA                 PF05368.8    233 sp|P39333|BDCA_ECOLI -            237     0.067   12.4   0.9   1   1   4.5e-05     0.095   11.9   0.9     1    65     9    73     9    86 0.85 NmrA-like family
Phage_portal         PF04860.7    347 sp|P75980|BEEE_ECOLI -            157   2.3e-25   89.0   0.0   1   1   1.8e-29   2.7e-25   88.7   0.0     5   108    33   135    28   155 0.90 Phage portal protein
Peptidase_M48        PF01435.13   226 sp|P66948|BEPA_ECOLI -            487   1.4e-26   93.4   1.5   1   1   2.8e-29   2.1e-26   92.8   0.1     8   225    47   254    40   255 0.85 Peptidase family M48
TPR_19               PF14559.1     68 sp|P66948|BEPA_ECOLI -            487   8.5e-13   48.4  20.9   1   3   4.6e-05     0.036   14.4   1.8    23    64   307   348   293   352 0.83 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P66948|BEPA_ECOLI -            487   8.5e-13   48.4  20.9   2   3   4.5e-13   3.5e-10   40.0   2.5     2    67   354   418   353   419 0.94 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P66948|BEPA_ECOLI -            487   3.2e-09   37.2  21.4   1   3   4.4e-08   3.5e-05   24.3   3.1     1    57   313   369   313   375 0.92 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P66948|BEPA_ECOLI -            487   3.2e-09   37.2  21.4   2   3   1.1e-05    0.0086   16.7   8.1     1    55   380   435   380   456 0.90 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|P66948|BEPA_ECOLI -            487   1.1e-08   34.8  22.2   1   3   1.4e-05     0.011   16.2   2.7     2    40   310   348   309   352 0.89 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|P66948|BEPA_ECOLI -            487   1.1e-08   34.8  22.2   2   3   3.2e-07   0.00025   21.4   0.1     3    44   378   419   376   419 0.94 Tetratricopeptide repeat
Apc3                 PF12895.2     84 sp|P66948|BEPA_ECOLI -            487   7.3e-05   22.8   2.9   2   3   5.4e-05     0.042   13.9   0.5    24    69   375   423   355   453 0.74 Anaphase-promoting complex, cyclosome, subunit 3
TPR_11               PF13414.1     69 sp|P66948|BEPA_ECOLI -            487   0.00028   20.4  16.0   2   4   8.7e-06    0.0068   16.0   1.1    15    62   355   400   351   403 0.89 TPR repeat
TPR_11               PF13414.1     69 sp|P66948|BEPA_ECOLI -            487   0.00028   20.4  16.0   3   4   1.7e-05     0.013   15.1   3.1     5    55   378   429   374   434 0.85 TPR repeat
TPR_6                PF13174.1     33 sp|P66948|BEPA_ECOLI -            487    0.0037   17.6  12.7   1   2   0.00046      0.36   11.3   0.9     2    32   311   341   310   342 0.84 Tetratricopeptide repeat
TPR_6                PF13174.1     33 sp|P66948|BEPA_ECOLI -            487    0.0037   17.6  12.7   2   2    0.0005      0.39   11.2   0.1     3    26   379   402   377   403 0.91 Tetratricopeptide repeat
DUF4157              PF13699.1     79 sp|P66948|BEPA_ECOLI -            487     0.017   15.2   1.2   1   1   6.4e-05      0.05   13.7   0.1    36    76   104   145   100   148 0.79 Domain of unknown function (DUF4157)
DUF2772              PF10970.3    121 sp|P66948|BEPA_ECOLI -            487     0.025   14.6   0.0   1   1   0.00015      0.12   12.4   0.0    89   116   451   478   445   484 0.89 Protein of unknown function (DUF2772)
TPR_4                PF07721.9     26 sp|P66948|BEPA_ECOLI -            487     0.048   14.0  19.9   2   3   0.00016      0.13   12.7   0.0     1    24   376   399   376   401 0.89 Tetratricopeptide repeat
Fis1_TPR_C           PF14853.1     53 sp|P66948|BEPA_ECOLI -            487     0.049   13.5   0.1   1   1   0.00023      0.18   11.7   0.1    15    42   323   350   309   354 0.85 Fis1 C-terminal tetratricopeptide repeat
Peptidase_MA_2       PF13485.1    128 sp|P66948|BEPA_ECOLI -            487       0.3   11.1   0.1   1   1   0.00039       0.3   11.1   0.1     9    44   111   149   103   163 0.68 Peptidase MA superfamily
TPR_12               PF13424.1     78 sp|P66948|BEPA_ECOLI -            487      0.97    9.4  12.2   2   3    0.0012      0.92    9.4   0.7    29    71   360   401   351   403 0.77 Tetratricopeptide repeat
TPR_20               PF14561.1     90 sp|P66948|BEPA_ECOLI -            487         2    8.6  15.3   3   4   0.00076      0.59   10.2   0.3    19    55   373   409   356   414 0.76 Tetratricopeptide repeat
TPR_17               PF13431.1     34 sp|P66948|BEPA_ECOLI -            487       7.5    7.0  12.4   1   1    0.0011      0.84    9.9   0.2    11    32   374   395   373   397 0.92 Tetratricopeptide repeat
GMC_oxred_N          PF00732.14   296 sp|P17444|BETA_ECOLI -            556    3e-107  358.1   0.0   1   1  2.6e-110  5.5e-107  357.3   0.0     1   295     3   300     3   301 0.99 GMC oxidoreductase
GMC_oxred_C          PF05199.8    144 sp|P17444|BETA_ECOLI -            556   5.4e-43  146.7   0.0   1   1   4.3e-46   9.1e-43  146.0   0.0     3   144   393   527   391   527 0.96 GMC oxidoreductase
DAO                  PF01266.19   358 sp|P17444|BETA_ECOLI -            556   9.7e-06   24.7   0.0   1   2   1.6e-05     0.033   13.0   0.0     1    33     4    37     4    40 0.95 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|P17444|BETA_ECOLI -            556   9.7e-06   24.7   0.0   2   2   0.00024       0.5    9.2   0.0   146   214   197   274   159   339 0.81 FAD dependent oxidoreductase
FAD_binding_2        PF00890.19   417 sp|P17444|BETA_ECOLI -            556   0.00053   18.9   0.0   1   2   8.9e-05      0.19   10.5   0.0     1    32     4    36     4    39 0.92 FAD binding domain
Lycopene_cycl        PF05834.7    374 sp|P17444|BETA_ECOLI -            556    0.0033   16.3   0.0   1   1   2.3e-06    0.0049   15.8   0.0     1    33     4    35     4    42 0.92 Lycopene cyclase protein
NAD_binding_8        PF13450.1     68 sp|P17444|BETA_ECOLI -            556    0.0098   15.9   0.0   1   1   1.7e-05     0.035   14.1   0.0     1    28     7    35     7    37 0.95 NAD(P)-binding Rossmann-like domain
Pyr_redox_2          PF07992.9    201 sp|P17444|BETA_ECOLI -            556     0.091   12.6   0.0   1   1   9.5e-05       0.2   11.5   0.0     1    33     4    37     4    55 0.80 Pyridine nucleotide-disulphide oxidoreductase
Aldedh               PF00171.17   462 sp|P17445|BETB_ECOLI -            490    4e-179  595.7   0.1   1   1  6.1e-183  4.5e-179  595.6   0.1     2   462    16   479    15   479 0.98 Aldehyde dehydrogenase family
Peptidase_C2         PF00648.16   298 sp|P17445|BETB_ECOLI -            490      0.14   11.1   0.1   1   1   3.5e-05      0.26   10.2   0.1   139   225    11   106     4   114 0.78 Calpain family cysteine protease
BCCT                 PF02028.12   485 sp|P0ABC9|BETT_ECOLI -            677  1.6e-173  577.4  44.2   1   1  2.5e-177  1.9e-173  577.2  44.2     1   484    17   502    17   503 0.99 BCCT family transporter
WBP-1                PF11669.3    102 sp|P0ABC9|BETT_ECOLI -            677       0.5   10.4   0.0   1   1   6.7e-05       0.5   10.4   0.0    22    84    56   117    52   125 0.85 WW domain-binding protein 1
Ferritin             PF00210.19   142 sp|P0ABD3|BFR_ECOLI  -            158     2e-36  124.8   3.1   1   1   3.6e-40   2.7e-36  124.4   3.1     1   142     8   144     8   144 0.98 Ferritin-like domain
DUF1241              PF06840.6    154 sp|P0ABD3|BFR_ECOLI  -            158     0.055   12.7   0.0   1   1     1e-05     0.076   12.2   0.0    29    77    95   143    81   157 0.84 Protein of unknown function (DUF1241)
Glyco_hydro_2_C      PF02836.12   298 sp|P06864|BGA2_ECOLI -           1030  1.7e-115  385.0   2.4   1   1  9.4e-119  2.8e-115  384.3   2.4     1   298   320   604   320   604 0.98 Glycosyl hydrolases family 2, TIM barrel domain
Bgal_small_N         PF02929.12   276 sp|P06864|BGA2_ECOLI -           1030   9.2e-87  290.5   0.1   1   1   5.4e-90   1.6e-86  289.7   0.1     1   275   727   997   727   998 0.99 Beta galactosidase small chain
Glyco_hydro_2_N      PF02837.13   167 sp|P06864|BGA2_ECOLI -           1030   7.8e-51  171.9   0.2   1   1   5.2e-54   1.5e-50  170.9   0.2     4   164    41   204    38   207 0.94 Glycosyl hydrolases family 2, sugar binding domain
Glyco_hydro_2        PF00703.16   110 sp|P06864|BGA2_ECOLI -           1030   2.5e-20   72.9   0.0   1   2   4.4e-23   1.3e-19   70.6   0.0     1   110   209   318   209   318 0.96 Glycosyl hydrolases family 2
Glyco_hydro_72       PF03198.9    315 sp|P06864|BGA2_ECOLI -           1030     0.074   12.0   0.1   1   1     6e-05      0.18   10.7   0.1    46   145   347   449   317   481 0.78 Glucanosyltransferase
Glyco_hydro_2_C      PF02836.12   298 sp|P00722|BGAL_ECOLI -           1024  2.2e-125  417.4   0.0   1   1  8.2e-129  3.1e-125  417.0   0.0     1   297   336   629   336   630 0.98 Glycosyl hydrolases family 2, TIM barrel domain
Bgal_small_N         PF02929.12   276 sp|P00722|BGAL_ECOLI -           1024   2.6e-91  305.4   0.0   1   1   1.1e-94     4e-91  304.8   0.0     5   275   753  1021   749  1022 0.98 Beta galactosidase small chain
Glyco_hydro_2_N      PF02837.13   167 sp|P00722|BGAL_ECOLI -           1024     2e-51  173.8   0.0   1   1     1e-54   3.9e-51  172.9   0.0     2   167    50   219    49   219 0.95 Glycosyl hydrolases family 2, sugar binding domain
Glyco_hydro_2        PF00703.16   110 sp|P00722|BGAL_ECOLI -           1024   7.8e-16   58.4   0.0   1   2     2e-18   7.4e-15   55.3   0.0     2   110   222   334   221   334 0.87 Glycosyl hydrolases family 2
Glyco_hydro_1        PF00232.13   455 sp|P11988|BGLB_ECOLI -            470  1.2e-152  508.2   0.3   1   1  1.9e-156  1.4e-152  508.0   0.3     3   454     2   459     1   460 0.95 Glycosyl hydrolase family 1
Cellulase            PF00150.13   281 sp|P11988|BGLB_ECOLI -            470   0.00013   21.2   0.0   1   1   3.4e-08   0.00025   20.3   0.0    25   133    67   175    51   214 0.82 Cellulase (glycosyl hydrolase family 5)
Glyco_hydro_1        PF00232.13   455 sp|Q46829|BGLA_ECOLI -            479    9e-132  439.4   2.1   1   1  2.1e-135  1.1e-131  439.2   2.1     3   454     6   476     4   477 0.92 Glycosyl hydrolase family 1
Cellulase            PF00150.13   281 sp|Q46829|BGLA_ECOLI -            479    0.0015   17.7   0.1   1   1   4.9e-07    0.0024   17.1   0.1    22   140    72   187    55   213 0.83 Cellulase (glycosyl hydrolase family 5)
DUF2812              PF11193.3    115 sp|Q46829|BGLA_ECOLI -            479     0.037   14.1   0.7   1   2   2.5e-05      0.12   12.4   0.0    48   101    68   125    53   134 0.84 Protein of unknown function (DUF2812)
LamB                 PF02264.10   398 sp|P26218|BGLH_ECOLI -            538  2.1e-152  507.8  22.4   1   1  3.9e-156  2.9e-152  507.4  22.4     1   398   127   538   127   538 0.98 LamB porin
Sugarporin_N         PF11471.3     60 sp|P26218|BGLH_ECOLI -            538   3.2e-18   65.1   6.8   1   1   7.5e-22   5.5e-18   64.3   6.8     4    59     3    59     1    60 0.91 Maltoporin periplasmic N-terminal extension
Glyco_hydro_2_C      PF02836.12   298 sp|P05804|BGLR_ECOLI -            603  8.2e-105  349.9   0.2   2   2  6.5e-108  1.9e-104  348.7   0.0     1   297   274   592   274   593 0.98 Glycosyl hydrolases family 2, TIM barrel domain
Glyco_hydro_2_N      PF02837.13   167 sp|P05804|BGLR_ECOLI -            603   2.5e-47  160.5   0.9   1   1   1.4e-50   4.2e-47  159.8   0.9     2   167    10   180     9   180 0.96 Glycosyl hydrolases family 2, sugar binding domain
Glyco_hydro_2        PF00703.16   110 sp|P05804|BGLR_ECOLI -            603   1.3e-08   35.2   0.1   1   1   1.3e-11   3.8e-08   33.7   0.1     3   110   184   272   182   272 0.86 Glycosyl hydrolases family 2
DUF4434              PF14488.1    166 sp|P05804|BGLR_ECOLI -            603   3.8e-05   23.4   0.0   1   1   4.8e-08   0.00014   21.6   0.0    52   158   329   442   299   448 0.74 Domain of unknown function (DUF4434)
Cellulase-like       PF12876.2     88 sp|P05804|BGLR_ECOLI -            603    0.0023   18.3   0.0   1   1   2.2e-06    0.0064   16.9   0.0     2    62   396   443   395   468 0.80 Sugar-binding cellulase-like
PRD                  PF00874.15    89 sp|P11989|BGLG_ECOLI -            278     2e-45  152.8   2.2   1   2   1.7e-29   1.2e-25   89.3   0.0     2    89    78   164    77   164 0.97 PRD domain
PRD                  PF00874.15    89 sp|P11989|BGLG_ECOLI -            278     2e-45  152.8   2.2   2   2   4.4e-21   3.2e-17   62.4   1.2     2    88   182   273   181   274 0.95 PRD domain
CAT_RBD              PF03123.10    59 sp|P11989|BGLG_ECOLI -            278   4.2e-25   87.1   0.8   1   1   1.1e-28     8e-25   86.3   0.8     1    57     3    59     3    61 0.96 CAT RNA binding domain
Glyco_hydro_3        PF00933.16   299 sp|P33363|BGLX_ECOLI -            765     5e-87  291.6   0.0   1   1   2.3e-90   8.4e-87  290.9   0.0     1   298    46   351    46   352 0.98 Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C      PF01915.17   227 sp|P33363|BGLX_ECOLI -            765   3.3e-69  232.8   0.8   1   1   1.9e-72   6.9e-69  231.8   0.8     1   227   395   650   395   650 0.94 Glycosyl hydrolase family 3 C-terminal domain
Fn3-like             PF14310.1     71 sp|P33363|BGLX_ECOLI -            765   1.4e-23   82.5   0.0   1   1   7.8e-27   2.9e-23   81.5   0.0     2    71   686   754   685   754 0.98 Fibronectin type III-like domain
CARDB                PF07705.6    101 sp|P33363|BGLX_ECOLI -            765     0.009   16.0   0.0   1   1   6.6e-06     0.025   14.6   0.0     7    72   655   728   650   745 0.80 CARDB
DUF1471              PF07338.8     56 sp|P0AB40|BHSA_ECOLI -             85   9.3e-20   70.0   0.1   1   1   8.2e-24   1.2e-19   69.6   0.1     2    56    33    85    32    85 0.98 Protein of unknown function (DUF1471)
Aminotran_3          PF00202.16   339 sp|P12995|BIOA_ECOLI -            429  7.4e-114  380.1   0.0   1   1  1.2e-117  8.6e-114  379.8   0.0     3   338    30   371    28   372 0.97 Aminotransferase class-III
Beta_elim_lyase      PF01212.16   290 sp|P12995|BIOA_ECOLI -            429   0.00078   18.6   0.0   1   1   1.8e-07    0.0013   17.9   0.0    45   164   104   245    67   246 0.71 Beta-eliminating lyase
BATS                 PF06968.8     93 sp|P12996|BIOB_ECOLI -            346   9.1e-30  102.3   0.0   1   1   2.7e-33     2e-29  101.2   0.0     1    93   220   312   220   312 0.99 Biotin and Thiamin Synthesis associated domain
Radical_SAM          PF04055.16   166 sp|P12996|BIOB_ECOLI -            346   4.2e-19   69.3   0.0   1   2   4.6e-22   3.4e-18   66.3   0.0     4   160    50   203    47   209 0.92 Radical SAM superfamily
Methyltransf_11      PF08241.7     95 sp|P12999|BIOC_ECOLI -            251   1.5e-23   83.1   0.0   1   1   2.8e-26   2.6e-23   82.3   0.0     1    95    47   138    47   138 0.98 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|P12999|BIOC_ECOLI -            251     1e-14   54.6   0.1   1   1   1.6e-17   1.5e-14   54.0   0.1     3   151    24   175    18   181 0.77 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P12999|BIOC_ECOLI -            251   1.7e-14   53.7   0.0   1   1   2.3e-17   2.1e-14   53.3   0.0     5   118    44   147    40   196 0.84 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|P12999|BIOC_ECOLI -            251   1.9e-10   41.0   0.0   1   1   4.4e-13   4.1e-10   40.0   0.0     1    98    47   135    47   136 0.86 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P12999|BIOC_ECOLI -            251   4.6e-09   36.8   0.0   1   1   9.7e-12     9e-09   35.9   0.0     4   110    45   139    42   141 0.78 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P12999|BIOC_ECOLI -            251   9.2e-09   35.5   0.0   1   1   3.8e-11   3.6e-08   33.6   0.0     1   101    46   134    46   134 0.87 Methyltransferase domain
Ubie_methyltran      PF01209.13   233 sp|P12999|BIOC_ECOLI -            251   5.5e-08   32.2   0.0   1   1   7.8e-11   7.2e-08   31.8   0.0    43   168    38   155     2   169 0.83 ubiE/COQ5 methyltransferase family
Methyltransf_26      PF13659.1    117 sp|P12999|BIOC_ECOLI -            251   8.8e-06   25.7   1.5   2   2     3e-08   2.8e-05   24.1   0.1     3   115    45   140    43   141 0.86 Methyltransferase domain
Methyltransf_8       PF05148.10   219 sp|P12999|BIOC_ECOLI -            251   0.00011   21.9   0.0   1   1   1.7e-07   0.00016   21.4   0.0    59   155    30   137    17   158 0.76 Hypothetical methyltransferase
MTS                  PF05175.9    170 sp|P12999|BIOC_ECOLI -            251   0.00016   21.1   0.0   1   1   2.5e-07   0.00023   20.5   0.0    20    74    31    83    22   110 0.82 Methyltransferase small domain
MetW                 PF07021.7    193 sp|P12999|BIOC_ECOLI -            251     0.015   14.6   0.0   1   1   2.3e-05     0.022   14.1   0.0    14   110    43   139    28   143 0.81 Methionine biosynthesis protein MetW
RrnaAD               PF00398.15   262 sp|P12999|BIOC_ECOLI -            251     0.025   13.6   0.0   1   1   3.8e-05     0.035   13.1   0.0    29    71    41    83    16    94 0.78 Ribosomal RNA adenine dimethylase
CMAS                 PF02353.15   273 sp|P12999|BIOC_ECOLI -            251     0.028   13.5   0.0   1   1   6.1e-05     0.057   12.4   0.0    45   103    25    82     9    97 0.83 Mycolic acid cyclopropane synthetase
DREV                 PF05219.7    265 sp|P12999|BIOC_ECOLI -            251     0.053   12.3   0.0   1   1   7.1e-05     0.065   12.0   0.0    91   186    39   138    25   195 0.76 DREV methyltransferase
NodS                 PF05401.6    201 sp|P12999|BIOC_ECOLI -            251     0.064   12.6   0.0   1   1   9.8e-05     0.091   12.1   0.0    29   145    29   139    13   153 0.80 Nodulation protein S (NodS)
Methyltransf_29      PF03141.11   506 sp|P12999|BIOC_ECOLI -            251     0.075   11.3   0.0   1   1   0.00013      0.12   10.6   0.0   117   219    42   140     4   162 0.63 Putative S-adenosyl-L-methionine-dependent methyltransferase
AAA_26               PF13500.1    199 sp|P13000|BIOD1_ECOLI -            225     4e-42  144.0   0.0   1   1   1.3e-45   4.7e-42  143.8   0.0     1   193     3   208     3   213 0.95 AAA domain
CbiA                 PF01656.18   195 sp|P13000|BIOD1_ECOLI -            225   1.8e-20   73.2   0.0   1   1   5.7e-24   2.1e-20   72.9   0.0     2   180     6   199     5   217 0.76 CobQ/CobB/MinD/ParA nucleotide binding domain
DUF1611              PF07755.6    301 sp|P13000|BIOD1_ECOLI -            225   9.5e-06   24.4   0.9   1   2   1.3e-07   0.00049   18.8   0.3   113   144     3    34     1    38 0.93 Protein of unknown function (DUF1611)
MobB                 PF03205.9    140 sp|P13000|BIOD1_ECOLI -            225     0.022   14.4   0.0   1   2   2.5e-05     0.091   12.4   0.0     8    49    11    51     3    78 0.78 Molybdopterin guanine dinucleotide synthesis protein B
AAA_26               PF13500.1    199 sp|P0A6E9|BIOD2_ECOLI -            231   2.5e-30  105.5   0.0   1   1   9.8e-34   2.9e-30  105.3   0.0     2   196     4   207     3   210 0.92 AAA domain
CbiA                 PF01656.18   195 sp|P0A6E9|BIOD2_ECOLI -            231   1.4e-17   63.7   0.0   1   1   5.8e-21   1.7e-17   63.4   0.0     2   181     6   196     5   213 0.79 CobQ/CobB/MinD/ParA nucleotide binding domain
DUF1611              PF07755.6    301 sp|P0A6E9|BIOD2_ECOLI -            231    0.0036   15.9   0.2   1   1   2.3e-06    0.0067   15.1   0.2   113   144     3    34     1    38 0.93 Protein of unknown function (DUF1611)
MobB                 PF03205.9    140 sp|P0A6E9|BIOD2_ECOLI -            231    0.0059   16.3   0.3   1   1   4.6e-06     0.014   15.1   0.3     5    43     7    46     3   116 0.84 Molybdopterin guanine dinucleotide synthesis protein B
MipZ                 PF09140.6    261 sp|P0A6E9|BIOD2_ECOLI -            231      0.12   11.4   0.0   1   1   5.3e-05      0.16   11.0   0.0    12   118    14   125     4   134 0.79 ATPase MipZ
Aminotran_1_2        PF00155.16   363 sp|P12998|BIOF_ECOLI -            384   1.2e-69  235.0   0.0   1   1   4.5e-73   1.3e-69  234.8   0.0     2   363    40   380    39   380 0.97 Aminotransferase class I and II
Beta_elim_lyase      PF01212.16   290 sp|P12998|BIOF_ECOLI -            384   2.4e-06   26.9   0.0   1   2   3.7e-09   1.1e-05   24.7   0.0    28    87    83   142    70   206 0.77 Beta-eliminating lyase
Cys_Met_Meta_PP      PF01053.15   386 sp|P12998|BIOF_ECOLI -            384   0.00045   18.6   0.0   1   1   2.3e-07   0.00067   18.0   0.0    57   185    86   212    82   215 0.87 Cys/Met metabolism PLP-dependent enzyme
DegT_DnrJ_EryC1      PF01041.12   363 sp|P12998|BIOF_ECOLI -            384     0.003   16.6   2.2   1   3   0.00033      0.98    8.3   0.1    27    66    86   124    75   142 0.83 DegT/DnrJ/EryC1/StrS aminotransferase family
Aminotran_5          PF00266.14   371 sp|P12998|BIOF_ECOLI -            384     0.031   13.0   0.0   1   1   1.7e-05      0.05   12.3   0.0    45   179    86   208    55   213 0.83 Aminotransferase class-V
Abhydrolase_6        PF12697.2    228 sp|P13001|BIOH_ECOLI -            256     6e-34  117.8   2.4   1   1   4.6e-37   6.8e-34  117.7   2.4     1   227    16   247    16   248 0.91 Alpha/beta hydrolase family
Abhydrolase_1        PF00561.15   230 sp|P13001|BIOH_ECOLI -            256   5.1e-27   94.9   0.0   1   1     4e-30     6e-27   94.6   0.0     1   229    40   250    40   251 0.93 alpha/beta hydrolase fold
Abhydrolase_5        PF12695.2    145 sp|P13001|BIOH_ECOLI -            256     9e-17   61.1   0.1   1   1   1.6e-18   2.3e-15   56.6   0.1     2   144    16   235    15   236 0.84 Alpha/beta hydrolase family
Thioesterase         PF00975.15   229 sp|P13001|BIOH_ECOLI -            256   6.7e-06   26.4   0.0   1   1     5e-09   7.4e-06   26.3   0.0     2   186    15   188    14   248 0.78 Thioesterase domain
Ndr                  PF03096.9    283 sp|P13001|BIOH_ECOLI -            256    0.0011   17.4   0.0   1   1     1e-06    0.0015   17.0   0.0    84   143    60   118    33   163 0.86 Ndr family
Peptidase_S9         PF00326.16   213 sp|P13001|BIOH_ECOLI -            256     0.011   14.9   0.0   1   1   1.3e-05      0.02   14.1   0.0    60    97    70   107    59   117 0.81 Prolyl oligopeptidase family
Esterase             PF00756.15   251 sp|P13001|BIOH_ECOLI -            256     0.015   14.7   0.0   1   1   1.5e-05     0.023   14.1   0.0   102   147    61   106    55   158 0.76 Putative esterase
PGAP1                PF07819.8    225 sp|P13001|BIOH_ECOLI -            256     0.023   14.2   0.0   1   1   2.2e-05     0.032   13.7   0.0    81   125    70   112    59   154 0.76 PGAP1-like protein
UPF0227              PF05728.7    187 sp|P13001|BIOH_ECOLI -            256     0.094   12.4   0.0   1   1   0.00011      0.16   11.6   0.0    44    87    59   103    51   123 0.79 Uncharacterised protein family (UPF0227)
DUF707               PF05212.7    294 sp|P13001|BIOH_ECOLI -            256      0.14   11.2   0.1   1   1   0.00015      0.22   10.5   0.1   219   236    18    35    11    48 0.84 Protein of unknown function (DUF707)
BPL_LplA_LipB        PF03099.14   125 sp|P06709|BIRA_ECOLI -            321     1e-20   73.9   0.0   1   1   7.4e-24   1.6e-20   73.4   0.0     4   125    86   208    83   208 0.89 Biotin/lipoate A/B protein ligase family
HTH_11               PF08279.7     55 sp|P06709|BIRA_ECOLI -            321     7e-13   48.0   0.0   1   1   7.8e-16   1.7e-12   46.8   0.0     4    54     9    58     8    59 0.93 HTH domain
BPL_C                PF02237.12    48 sp|P06709|BIRA_ECOLI -            321   1.8e-11   43.5   0.2   1   1   2.1e-14   4.4e-11   42.2   0.2     1    48   271   317   271   317 0.97 Biotin protein ligase C terminal domain
HTH_24               PF13412.1     48 sp|P06709|BIRA_ECOLI -            321     0.019   14.3   0.4   1   2   3.3e-05     0.071   12.5   0.0    10    42    11    44     8    45 0.86 Winged helix-turn-helix DNA-binding
HTH_5                PF01022.15    47 sp|P06709|BIRA_ECOLI -            321     0.042   13.5   0.0   1   1   4.6e-05     0.098   12.3   0.0     5    43     8    47     7    48 0.93 Bacterial regulatory protein, arsR family
DUF3363              PF11843.3    377 sp|P06709|BIRA_ECOLI -            321     0.096   11.3   0.0   1   1   6.3e-05      0.13   10.8   0.0   238   322   194   276   189   282 0.77 Protein of unknown function (DUF3363)
Mga                  PF05043.8     87 sp|P06709|BIRA_ECOLI -            321      0.16   12.2   0.0   1   1   0.00016      0.33   11.2   0.0    18    55     7    44     2    46 0.91 Mga helix-turn-helix domain
Molybdopterin        PF00384.17   432 sp|P20099|BISC_ECOLI -            777  6.2e-113  377.7   0.0   1   1    1e-116  7.5e-113  377.5   0.0     1   432    56   517    56   517 0.98 Molybdopterin oxidoreductase
Molydop_binding      PF01568.16   110 sp|P20099|BISC_ECOLI -            777   4.5e-24   84.3   0.0   1   1   1.7e-27   1.3e-23   82.9   0.0     2    96   637   740   636   754 0.93 Molydopterin dinucleotide binding domain
Lipocalin_2          PF08212.7    143 sp|P0A901|BLC_ECOLI  -            177   6.3e-51  171.9   0.0   1   1   9.9e-55   7.4e-51  171.7   0.0     1   143    34   174    34   174 0.98 Lipocalin-like domain
Lipocalin            PF00061.18   144 sp|P0A901|BLC_ECOLI  -            177   4.2e-09   36.5   0.0   1   1   7.6e-13   5.6e-09   36.1   0.0     2   139    41   171    40   175 0.85 Lipocalin / cytosolic fatty-acid binding protein family
BolA                 PF01722.13    76 sp|P0ABE2|BOLA_ECOLI -            105     1e-29  102.2   0.1   1   1   8.1e-34   1.2e-29  102.0   0.1     1    76    10    85     9    85 0.98 BolA-like protein
Lambda_Bor           PF06291.6     97 sp|P77330|BORD_ECOLI -             97   5.6e-62  205.6   3.8   1   1   1.3e-65   6.2e-62  205.5   3.8     1    97     1    97     1    97 0.99 Bor protein
DUF898               PF05987.8    339 sp|P77330|BORD_ECOLI -             97     0.086   11.7   1.0   2   2   2.6e-05      0.13   11.1   0.2    20    35    73    88    70    88 0.93 Bacterial protein of unknown function (DUF898)
Branch_AA_trans      PF05525.8    428 sp|P0AD99|BRNQ_ECOLI -            439  6.3e-158  525.8  32.2   1   1  4.9e-162  7.2e-158  525.6  32.2     3   427     8   429     6   430 0.99 Branched-chain amino acid transport protein
DUF1471              PF07338.8     56 sp|P39297|BSMA_ECOLI -            109   5.9e-16   57.8   0.3   1   1   1.1e-19   7.9e-16   57.4   0.3     1    56    52   108    52   108 0.98 Protein of unknown function (DUF1471)
DUF2077              PF09850.4    206 sp|P39297|BSMA_ECOLI -            109      0.13   11.5   0.4   1   1   2.2e-05      0.16   11.3   0.3    50    78    76   104    17   109 0.85 Uncharacterized protein conserved in bacteria (DUF2077)
TonB_dep_Rec         PF00593.19   277 sp|P06129|BTUB_ECOLI -            614   2.4e-30  106.3  21.2   1   1   3.3e-34   2.4e-30  106.3  21.2     1   277   390   613   390   613 0.90 TonB dependent receptor
Plug                 PF07715.10   108 sp|P06129|BTUB_ECOLI -            614   5.8e-30  103.8   1.5   1   2   7.8e-34   5.8e-30  103.8   1.5     4   108    41   146    38   146 0.97 TonB-dependent Receptor Plug Domain
FecCD                PF01032.13   311 sp|P06609|BTUC_ECOLI -            326   4.9e-85  285.0  36.3   1   1   4.1e-89   6.1e-85  284.7  36.3     1   311    22   323    22   323 0.97 FecCD transport family
ABC_tran             PF00005.22   137 sp|P06611|BTUD_ECOLI -            249   5.8e-22   78.4   0.0   1   1   1.6e-24   9.3e-22   77.7   0.0     3   137    18   162    16   162 0.87 ABC transporter
AAA_21               PF13304.1    303 sp|P06611|BTUD_ECOLI -            249   1.6e-07   31.6   0.4   1   2   0.00011     0.063   13.2   0.1     4    16    31    43    31    62 0.92 AAA domain
AAA_21               PF13304.1    303 sp|P06611|BTUD_ECOLI -            249   1.6e-07   31.6   0.4   2   2   8.7e-06    0.0052   16.8   0.0   237   299   127   193    93   196 0.82 AAA domain
AAA_22               PF13401.1    131 sp|P06611|BTUD_ECOLI -            249   9.3e-06   25.8   0.1   1   1   6.3e-08   3.7e-05   23.8   0.1     5   122    27   189    23   196 0.79 AAA domain
SMC_N                PF02463.14   220 sp|P06611|BTUD_ECOLI -            249     4e-05   22.9   0.4   1   2   0.00099      0.59    9.3   0.1    28    42    30    44    22    58 0.86 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|P06611|BTUD_ECOLI -            249     4e-05   22.9   0.4   2   2   0.00014     0.086   12.0   0.0   133   198   123   191    66   204 0.79 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P06611|BTUD_ECOLI -            249   0.00035   20.0   0.2   1   1   1.5e-06   0.00086   18.7   0.2    22    50    25    52    20    61 0.73 P-loop containing region of AAA domain
SbcCD_C              PF13558.1     90 sp|P06611|BTUD_ECOLI -            249   0.00067   19.5   0.0   1   1   2.5e-06    0.0015   18.3   0.0    26    84   120   172    96   178 0.80 Putative exonuclease SbcCD, C subunit
AAA_15               PF13175.1    415 sp|P06611|BTUD_ECOLI -            249    0.0011   18.0   0.0   2   2   0.00016     0.094   11.7   0.0   339   411   124   192    98   193 0.86 AAA ATPase domain
AAA_25               PF13481.1    194 sp|P06611|BTUD_ECOLI -            249    0.0014   18.0   0.7   1   1   4.9e-06    0.0029   17.0   0.5    28    63    22    63     8   127 0.76 AAA domain
Sigma70_ECF          PF07638.6    185 sp|P06611|BTUD_ECOLI -            249    0.0093   15.6   0.0   1   1   2.4e-05     0.014   15.0   0.0    87   174   116   206   102   215 0.87 ECF sigma factor
DUF258               PF03193.11   161 sp|P06611|BTUD_ECOLI -            249     0.013   14.7   0.0   1   1     3e-05     0.018   14.2   0.0    24    58    14    49     2   125 0.84 Protein of unknown function, DUF258
AAA_23               PF13476.1    202 sp|P06611|BTUD_ECOLI -            249     0.016   15.5   0.1   1   1   4.2e-05     0.025   14.9   0.1    24    46    31    53    28    64 0.86 AAA domain
AAA_33               PF13671.1    143 sp|P06611|BTUD_ECOLI -            249     0.019   14.8   0.4   1   1   5.4e-05     0.032   14.1   0.4     3    21    30    48    28   204 0.85 AAA domain
SRP54                PF00448.17   196 sp|P06611|BTUD_ECOLI -            249     0.024   14.1   0.4   1   1   8.3e-05     0.049   13.0   0.2     3    28    28    53    26    59 0.86 SRP54-type protein, GTPase domain
Miro                 PF08477.8    119 sp|P06611|BTUD_ECOLI -            249     0.035   14.5   0.0   1   1   0.00013     0.078   13.4   0.0     3    25    30    52    29    84 0.87 Miro-like protein
AAA_16               PF13191.1    185 sp|P06611|BTUD_ECOLI -            249     0.044   13.7   2.1   1   1   0.00015     0.091   12.7   2.1    24   184    26   186     6   208 0.50 AAA ATPase domain
DUF927               PF06048.6    286 sp|P06611|BTUD_ECOLI -            249     0.051   12.8   0.1   1   1    0.0002      0.12   11.6   0.0   193   240    26    79    16    85 0.82 Domain of unknown function (DUF927)
AAA_10               PF12846.2    304 sp|P06611|BTUD_ECOLI -            249     0.053   12.9   0.9   1   1    0.0002      0.12   11.7   0.8     6    29    31    54    27   196 0.93 AAA-like domain
NACHT                PF05729.7    166 sp|P06611|BTUD_ECOLI -            249     0.054   13.1   0.8   1   1    0.0003      0.18   11.4   0.2     3    21    29    47    27    58 0.88 NACHT domain
MobB                 PF03205.9    140 sp|P06611|BTUD_ECOLI -            249     0.063   12.9   0.0   1   1   0.00024      0.14   11.8   0.0     2    27    28    53    27    56 0.86 Molybdopterin guanine dinucleotide synthesis protein B
AAA_5                PF07728.9    139 sp|P06611|BTUD_ECOLI -            249     0.075   12.7   0.1   1   1   0.00032      0.19   11.4   0.1     3    24    30    52    28    77 0.86 AAA domain (dynein-related subfamily)
AAA_PrkA             PF08298.6    358 sp|P06611|BTUD_ECOLI -            249     0.089   11.4   0.1   1   1   0.00039      0.23   10.0   0.0    88   108    26    46    11    58 0.87 PrkA AAA domain
MMR_HSR1             PF01926.18   116 sp|P06611|BTUD_ECOLI -            249     0.092   12.7   0.0   1   1   0.00028      0.17   11.8   0.0     4    58    31   114    29   194 0.55 50S ribosome-binding GTPase
Zeta_toxin           PF06414.7    201 sp|P06611|BTUD_ECOLI -            249      0.11   11.6   0.2   1   1   0.00042      0.25   10.4   0.3    20    47    30    57    23    63 0.85 Zeta toxin
AAA_14               PF13173.1    128 sp|P06611|BTUD_ECOLI -            249      0.14   12.0   0.0   1   1    0.0011      0.65    9.8   0.0     3    25    27    49    25    88 0.79 AAA domain
UPF0079              PF02367.12   123 sp|P06611|BTUD_ECOLI -            249      0.15   11.6   0.1   1   1   0.00049      0.29   10.7   0.1    11    37    22    48    13    58 0.80 Uncharacterised P-loop hydrolase UPF0079
Peripla_BP_2         PF01497.13   238 sp|P37028|BTUF_ECOLI -            266   1.9e-27   95.9   0.1   1   1   4.7e-31   2.3e-27   95.6   0.1     1   203    26   217    26   231 0.93 Periplasmic binding protein
DUF2493              PF10686.4     71 sp|P37028|BTUF_ECOLI -            266    0.0037   16.7   0.0   1   1   2.5e-06     0.013   15.0   0.0     8    67   182   243   176   247 0.83 Protein of unknown function (DUF2493)
T4SS                 PF07996.6    195 sp|P37028|BTUF_ECOLI -            266    0.0051   16.6   0.7   1   1   1.9e-06    0.0095   15.8   0.7     2    57   104   165   103   178 0.84 Type IV secretion system proteins
GSHPx                PF00255.14   108 sp|P06610|BTUE_ECOLI -            183   1.1e-45  153.4   0.0   1   1   1.8e-49   1.3e-45  153.1   0.0     3   107     7   111     5   112 0.97 Glutathione peroxidase
Redoxin              PF08534.5    146 sp|P06610|BTUE_ECOLI -            183    0.0041   16.6   0.0   1   2   1.1e-05     0.084   12.4   0.0    15    67    12    62     2    80 0.87 Redoxin
CobA_CobO_BtuR       PF02572.10   172 sp|P0A9H5|BTUR_ECOLI -            196   1.5e-71  239.5   0.1   1   1   5.9e-75   1.8e-71  239.3   0.1     2   172    27   196    26   196 0.99 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
Co_AT_N              PF12557.3     24 sp|P0A9H5|BTUR_ECOLI -            196   2.7e-07   30.2   6.4   1   1   9.1e-11   2.7e-07   30.2   6.4     6    24     3    21     1    21 0.94 Cob(I)alamin adenosyltransferase N terminal
AAA_19               PF13245.1     76 sp|P0A9H5|BTUR_ECOLI -            196     0.083   12.6   0.5   1   1   6.7e-05       0.2   11.4   0.5     3    49    21    63    19    72 0.81 Part of AAA domain
Cytochrom_B_N        PF00033.14   188 sp|P0ABE5|C561_ECOLI -            176   7.2e-25   87.4   9.4   1   1   3.2e-28     8e-25   87.2   9.4     3   187     4   172     2   173 0.96 Cytochrome b(N-terminal)/b6/petB
Ni_hydr_CYTB         PF01292.15   182 sp|P0ABE5|C561_ECOLI -            176   9.9e-22   77.1  10.2   1   1   4.7e-25   1.2e-21   76.9  10.2     1   181     4   172     4   173 0.92 Prokaryotic cytochrome b561
Cytochrom_B561       PF03188.11   137 sp|P0ABE5|C561_ECOLI -            176    0.0056   16.5   5.6   1   2   5.6e-05      0.14   11.9   0.1    83   128    16    62     2    67 0.69 Eukaryotic cytochrome b561
DUF4405              PF14358.1     64 sp|P0ABE5|C561_ECOLI -            176     0.011   15.8   7.5   2   2   0.00027      0.66   10.1   1.5     7    60    88   152    85   155 0.84 Domain of unknown function (DUF4405)
SID-1_RNA_chan       PF13965.1    570 sp|P0ABE5|C561_ECOLI -            176      0.11   10.6   0.0   1   1   6.9e-05      0.17   10.0   0.0   222   288    84   150    74   164 0.91 dsRNA-gated channel SID-1
Cytochrom_B_N        PF00033.14   188 sp|P75925|C56I_ECOLI -            188   1.5e-31  109.2  14.2   1   1   2.2e-35   1.6e-31  109.1  14.2     2   187     8   180     7   181 0.98 Cytochrome b(N-terminal)/b6/petB
Ni_hydr_CYTB         PF01292.15   182 sp|P75925|C56I_ECOLI -            188   1.5e-28   99.4  14.2   1   1   2.3e-32   1.7e-28   99.2  14.2     1   181     9   180     9   181 0.92 Prokaryotic cytochrome b561
Cytochrom_B_N        PF00033.14   188 sp|P76345|C56H_ECOLI -            176   1.6e-22   79.8  12.3   1   1   4.8e-26   1.8e-22   79.6  12.3     2   187     2   173     1   174 0.96 Cytochrome b(N-terminal)/b6/petB
Ni_hydr_CYTB         PF01292.15   182 sp|P76345|C56H_ECOLI -            176   1.1e-18   67.2  11.5   1   1   3.6e-22   1.3e-18   67.0  11.5     1   181     3   173     3   174 0.85 Prokaryotic cytochrome b561
Rz1                  PF06085.6     40 sp|P76345|C56H_ECOLI -            176     0.096   12.1   1.2   1   1   4.3e-05      0.16   11.4   1.2    13    24    74    85    68    95 0.83 Lipoprotein Rz1 precursor
DUF4405              PF14358.1     64 sp|P76345|C56H_ECOLI -            176       1.6    8.8  13.3   2   2   0.00014      0.52   10.4   4.3     6    61    88   154    83   156 0.78 Domain of unknown function (DUF4405)
AA_permease_2        PF13520.1    426 sp|P0AAE8|CADB_ECOLI -            444   1.5e-40  139.0  55.2   1   1   3.2e-44   2.4e-40  138.4  55.2     1   423     7   420     7   424 0.85 Amino acid permease
AA_permease          PF00324.16   478 sp|P0AAE8|CADB_ECOLI -            444   3.4e-22   78.4  47.6   1   1   1.2e-25   8.7e-22   77.1  47.6     8   389    18   376     8   435 0.82 Amino acid permease
Acyl-CoA_dh_1        PF00441.19   150 sp|P60584|CAIA_ECOLI -            380   1.6e-46  158.0   1.3   1   1   7.4e-50   2.2e-46  157.6   1.3     1   150   227   376   227   376 0.99 Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_N        PF02771.11   113 sp|P60584|CAIA_ECOLI -            380   7.6e-17   61.9   0.1   1   1   5.3e-20   1.6e-16   60.8   0.1     1   106     6   110     6   116 0.92 Acyl-CoA dehydrogenase, N-terminal domain
Acyl-CoA_dh_M        PF02770.14    52 sp|P60584|CAIA_ECOLI -            380   3.2e-16   58.5   0.1   1   1   3.4e-19     1e-15   56.9   0.0     3    51   123   171   121   172 0.97 Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_2        PF08028.6    134 sp|P60584|CAIA_ECOLI -            380   1.6e-15   57.5   0.8   1   1   8.5e-19   2.5e-15   56.8   0.8     9   125   250   356   243   359 0.95 Acyl-CoA dehydrogenase, C-terminal domain
HpaB_N               PF11794.3    264 sp|P60584|CAIA_ECOLI -            380     0.016   14.5   0.0   1   1   9.4e-06     0.028   13.8   0.0   173   223   147   196   119   215 0.84 4-hydroxyphenylacetate 3-hydroxylase N terminal
CoA_transf_3         PF02515.12   191 sp|P31572|CAIB_ECOLI -            405   1.6e-47  161.2   0.0   1   1   1.4e-51   2.1e-47  160.8   0.0     2   181    70   249    69   258 0.93 CoA-transferase family III
AMP-binding          PF00501.23   417 sp|P31552|CAIC_ECOLI -            517   2.6e-92  309.4   0.0   1   1   6.2e-96     3e-92  309.1   0.0     5   416    17   426    13   427 0.82 AMP-binding enzyme
AMP-binding_C        PF13193.1     73 sp|P31552|CAIC_ECOLI -            517   2.4e-13   50.8   0.0   2   2   2.5e-16   1.2e-12   48.5   0.0     1    73   435   510   435   510 0.92 AMP-binding enzyme C-terminal domain
Response_reg         PF00072.19   112 sp|P31552|CAIC_ECOLI -            517      0.11   12.4   0.0   1   1   6.3e-05      0.31   11.0   0.0    13    72   100   163    90   175 0.77 Response regulator receiver domain
ECH                  PF00378.15   245 sp|P31551|CAID_ECOLI -            261   1.2e-81  273.4   0.0   1   1   1.8e-85   1.3e-81  273.3   0.0     3   245     8   253     6   253 0.99 Enoyl-CoA hydratase/isomerase family
Peptidase_S49        PF01343.13   154 sp|P31551|CAID_ECOLI -            261    0.0089   15.8   0.1   1   2   1.1e-05      0.08   12.7   0.0     6    37    94   125    90   128 0.92 Peptidase family S49
Hexapep              PF00132.19    36 sp|P39206|CAIE_ECOLI -            196   1.5e-16   59.0  14.9   1   4   2.2e-09   1.6e-05   24.1   0.5     2    34    11    43    10    45 0.90 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P39206|CAIE_ECOLI -            196   1.5e-16   59.0  14.9   3   4     3e-09   2.2e-05   23.7   3.3     1    34    71   103    71   103 0.97 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P39206|CAIE_ECOLI -            196   1.5e-16   59.0  14.9   4   4   8.8e-12   6.5e-08   31.7   0.2     1    35    88   122    88   123 0.94 Bacterial transferase hexapeptide (six repeats)
Hexapep_2            PF14602.1     34 sp|P39206|CAIE_ECOLI -            196   3.2e-05   23.3  16.1   3   4   2.5e-06     0.018   14.5   3.1     2    32    72   103    71   103 0.96 Hexapeptide repeat of succinyl-transferase
Hexapep_2            PF14602.1     34 sp|P39206|CAIE_ECOLI -            196   3.2e-05   23.3  16.1   4   4   5.1e-08   0.00037   19.9   0.6     4    28    91   117    89   123 0.93 Hexapeptide repeat of succinyl-transferase
BCCT                 PF02028.12   485 sp|P31553|CAIT_ECOLI -            504  1.4e-123  412.7  44.0   1   1    1e-127  1.5e-123  412.5  44.0     1   484    14   500    14   501 0.98 BCCT family transporter
Pro_CA               PF00484.14   153 sp|P61517|CAN_ECOLI  -            220   1.7e-48  164.4   0.0   1   1   1.4e-52   2.1e-48  164.1   0.0     2   152    38   187    37   188 0.92 Carbonic anhydrase
PEPcase              PF00311.12   794 sp|P00864|CAPP_ECOLI -            883  1.5e-293  975.5   0.0   1   1  2.5e-297  1.9e-293  975.2   0.0     2   794   129   883   128   883 0.98 Phosphoenolpyruvate carboxylase
PEPcase_2            PF14010.1    491 sp|P00864|CAPP_ECOLI -            883   5.3e-05   21.7   0.0   1   1   1.2e-08   8.5e-05   21.0   0.0   157   257   489   589   467   721 0.89 Phosphoenolpyruvate carboxylase
CPSase_sm_chain      PF00988.17   131 sp|P0A6F1|CARA_ECOLI -            382   1.7e-56  189.2   0.1   1   1   7.7e-60   2.9e-56  188.5   0.1     2   131     4   133     3   133 0.99 Carbamoyl-phosphate synthase small chain, CPSase domain
GATase               PF00117.23   192 sp|P0A6F1|CARA_ECOLI -            382   1.3e-49  168.2   0.0   1   1   6.9e-53   2.5e-49  167.3   0.0     3   191   197   372   194   373 0.95 Glutamine amidotransferase class-I
Peptidase_C26        PF07722.8    217 sp|P0A6F1|CARA_ECOLI -            382   1.4e-08   34.4   0.1   1   1   1.6e-10   5.8e-07   29.1   0.1    94   217   250   355   237   355 0.80 Peptidase C26
DJ-1_PfpI            PF01965.19   147 sp|P0A6F1|CARA_ECOLI -            382     0.035   13.5   0.1   1   1   1.8e-05     0.067   12.6   0.1    24    91   219   282   213   351 0.77 DJ-1/PfpI family
CPSase_L_D2          PF02786.12   211 sp|P00968|CARB_ECOLI -           1073    1e-117  390.8   2.5   1   2   1.5e-80   1.7e-77  259.4   0.0     1   210   128   334   128   335 0.99 Carbamoyl-phosphate synthase L chain, ATP binding domain
CPSase_L_D2          PF02786.12   211 sp|P00968|CARB_ECOLI -           1073    1e-117  390.8   2.5   2   2     3e-41   3.4e-38  131.0   0.6     1   210   674   876   674   877 0.95 Carbamoyl-phosphate synthase L chain, ATP binding domain
CPSase_L_chain       PF00289.17   110 sp|P00968|CARB_ECOLI -           1073     5e-47  158.5   0.0   1   2     1e-25   1.2e-22   80.1   0.1     1   110     6   123     6   123 0.98 Carbamoyl-phosphate synthase L chain, N-terminal domain
CPSase_L_chain       PF00289.17   110 sp|P00968|CARB_ECOLI -           1073     5e-47  158.5   0.0   2   2   2.6e-24   2.9e-21   75.6   0.0     3   110   560   669   558   669 0.97 Carbamoyl-phosphate synthase L chain, N-terminal domain
CPSase_L_D3          PF02787.14   123 sp|P00968|CARB_ECOLI -           1073   2.2e-42  143.7   0.1   1   1   7.2e-45   8.2e-42  141.8   0.0     2   123   425   547   424   547 0.96 Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ATP-grasp_4          PF13535.1    184 sp|P00968|CARB_ECOLI -           1073   3.8e-42  144.0   0.3   1   2   6.4e-22   7.3e-19   68.2   0.0     3   182   127   307   125   309 0.91 ATP-grasp domain
ATP-grasp_4          PF13535.1    184 sp|P00968|CARB_ECOLI -           1073   3.8e-42  144.0   0.3   2   2   2.1e-23   2.4e-20   73.0   0.2     2   180   672   847   671   849 0.91 ATP-grasp domain
ATPgrasp_Ter         PF15632.1    330 sp|P00968|CARB_ECOLI -           1073   1.7e-26   92.7   0.8   1   3   9.6e-08   0.00011   21.0   0.0    22   160    40   178    26   204 0.82 ATP-grasp in the biosynthetic pathway with Ter operon
ATPgrasp_Ter         PF15632.1    330 sp|P00968|CARB_ECOLI -           1073   1.7e-26   92.7   0.8   2   3   5.2e-05      0.06   12.0   0.0   251   309   272   333   245   349 0.80 ATP-grasp in the biosynthetic pathway with Ter operon
ATPgrasp_Ter         PF15632.1    330 sp|P00968|CARB_ECOLI -           1073   1.7e-26   92.7   0.8   3   3   5.5e-18   6.3e-15   54.7   0.4    54   311   622   877   600   895 0.80 ATP-grasp in the biosynthetic pathway with Ter operon
MGS                  PF02142.17    95 sp|P00968|CARB_ECOLI -           1073   3.3e-19   68.6   0.1   1   1   2.2e-21   2.5e-18   65.7   0.0     2    94   957  1041   956  1042 0.97 MGS-like domain
ATP-grasp            PF02222.17   172 sp|P00968|CARB_ECOLI -           1073   1.4e-14   53.8   0.4   1   2   2.4e-08   2.7e-05   23.5   0.0     2   161   137   304   136   312 0.82 ATP-grasp domain
ATP-grasp            PF02222.17   172 sp|P00968|CARB_ECOLI -           1073   1.4e-14   53.8   0.4   2   2     1e-09   1.2e-06   28.0   0.2     3   161   684   846   682   849 0.86 ATP-grasp domain
ATP-grasp_3          PF02655.9    161 sp|P00968|CARB_ECOLI -           1073   5.9e-11   42.4   0.9   1   2   0.00055      0.63    9.8   0.0    30   158   162   304   128   307 0.74 ATP-grasp domain
ATP-grasp_3          PF02655.9    161 sp|P00968|CARB_ECOLI -           1073   5.9e-11   42.4   0.9   2   2   3.9e-10   4.4e-07   29.8   0.0     8   158   679   846   672   849 0.79 ATP-grasp domain
Dala_Dala_lig_C      PF07478.8    203 sp|P00968|CARB_ECOLI -           1073   8.1e-11   41.6   0.3   1   2   6.2e-05      0.07   12.5   0.0    24   173   154   302   136   310 0.73 D-ala D-ala ligase C-terminus
Dala_Dala_lig_C      PF07478.8    203 sp|P00968|CARB_ECOLI -           1073   8.1e-11   41.6   0.3   2   2   2.7e-09   3.1e-06   26.7   0.1    14   173   694   844   681   864 0.78 D-ala D-ala ligase C-terminus
Radical_SAM          PF04055.16   166 sp|P00968|CARB_ECOLI -           1073   3.5e-05   24.0   1.2   1   2   3.8e-05     0.043   13.9   0.0    48   152   403   524   385   530 0.87 Radical SAM superfamily
SmpA_OmlA            PF04355.8     71 sp|P00968|CARB_ECOLI -           1073     0.019   14.5   0.1   1   1   3.8e-05     0.043   13.4   0.1    26    63   997  1042   995  1045 0.85 SmpA / OmlA family
Cas_Cas1             PF01867.11   282 sp|Q46896|CAS1_ECOLI -            305   4.2e-21   75.2   0.0   1   2   1.7e-10   2.6e-06   26.7   0.0     9   107    24   121    16   128 0.85 CRISPR associated protein Cas1
Cas_Cas1             PF01867.11   282 sp|Q46896|CAS1_ECOLI -            305   4.2e-21   75.2   0.0   2   2   1.3e-16   1.9e-12   46.8   0.0   144   240   132   228   121   248 0.85 CRISPR associated protein Cas1
Cas_Cas2CT1978       PF09707.5     86 sp|P45956|CAS2_ECOLI -             94   1.1e-39  134.2   0.2   1   1   8.4e-44   1.2e-39  134.0   0.2     1    86     3    88     3    88 0.99 CRISPR-associated protein (Cas_Cas2CT1978)
DEAD                 PF00270.24   169 sp|P38036|CAS3_ECOLI -            888   1.4e-09   37.6   0.1   1   1   6.8e-12     1e-08   34.8   0.1    16   168   309   493   292   494 0.68 DEAD/DEAH box helicase
ResIII               PF04851.10   184 sp|P38036|CAS3_ECOLI -            888   5.8e-07   29.5   0.0   1   2   6.4e-09   9.5e-06   25.5   0.0    28   162   310   461   289   488 0.74 Type III restriction enzyme, res subunit
AAA_19               PF13245.1     76 sp|P38036|CAS3_ECOLI -            888   4.1e-06   26.4   0.1   1   1   9.3e-09   1.4e-05   24.7   0.1     9    70   306   360   297   370 0.82 Part of AAA domain
PhoH                 PF02562.11   205 sp|P38036|CAS3_ECOLI -            888   0.00015   21.1   0.0   1   2   5.8e-06    0.0086   15.3   0.0    14    59   301   347   291   367 0.80 PhoH-like protein
Helicase_C           PF00271.26    78 sp|P38036|CAS3_ECOLI -            888   0.00034   20.4   0.2   1   1   5.4e-07    0.0008   19.2   0.2     3    77   590   669   588   670 0.77 Helicase conserved C-terminal domain
AAA_30               PF13604.1    196 sp|P38036|CAS3_ECOLI -            888    0.0069   15.9   0.1   1   2   2.5e-05     0.037   13.6   0.1     3    71   292   362   290   401 0.86 AAA domain
UvrD-helicase        PF00580.16   315 sp|P38036|CAS3_ECOLI -            888     0.015   14.6   0.0   1   1   1.5e-05     0.022   14.0   0.0    16   140   310   470   301   653 0.79 UvrD/REP helicase N-terminal domain
AAA_22               PF13401.1    131 sp|P38036|CAS3_ECOLI -            888     0.017   15.2   0.0   1   1   6.3e-05     0.093   12.8   0.0     5   106   308   466   305   485 0.68 AAA domain
DUF3186              PF11382.3    308 sp|P38036|CAS3_ECOLI -            888     0.045   12.8   0.0   1   1   5.2e-05     0.078   12.1   0.0    82   143   444   505   434   516 0.87 Protein of unknown function (DUF3186)
AAA_11               PF13086.1    236 sp|P38036|CAS3_ECOLI -            888      0.16   11.5   0.0   1   1   0.00019      0.28   10.7   0.0    16   105   306   386   290   421 0.61 AAA domain
Cas_Cas5d            PF09704.5    218 sp|Q46898|CAS5_ECOLI -            224   9.3e-50  169.2   0.0   1   1   7.6e-54   1.1e-49  168.9   0.0     1   215     4   211     4   214 0.87 CRISPR-associated protein (Cas_Cas5)
CRISPR_assoc         PF08798.6    214 sp|Q46897|CAS6_ECOLI -            199   6.6e-50  169.8   0.0   1   1     5e-54   7.5e-50  169.6   0.0     1   214     1   198     1   198 0.94 CRISPR associated protein
Catalase             PF00199.14   384 sp|P21179|CATE_ECOLI -            753  1.2e-169  564.0   0.1   1   1  2.1e-173  1.6e-169  563.6   0.1     1   382    81   467    81   469 0.99 Catalase
Catalase-rel         PF06628.7     68 sp|P21179|CATE_ECOLI -            753   5.2e-20   71.0   0.0   1   1   1.5e-23   1.1e-19   70.0   0.0     1    68   495   563   495   563 0.98 Catalase-related immune-responsive
YagB_YeeU_YfjZ       PF06154.6    105 sp|P76364|CBEA_ECOLI -            122   7.6e-51  170.7   0.0   1   1   1.2e-54   8.9e-51  170.5   0.0     2   104    16   118    15   119 0.98 YagB/YeeU/YfjZ family
Nucleotid_trans      PF03407.11   212 sp|P76364|CBEA_ECOLI -            122      0.02   14.6   0.0   1   1   3.5e-06     0.026   14.3   0.0    64   111    47    92    39   110 0.85 Nucleotide-diphospho-sugar transferase
MerR_2               PF13591.1     84 sp|P63264|CBPM_ECOLI -            101   6.2e-30  102.6   0.3   1   1   4.8e-34   7.1e-30  102.4   0.3     1    84     8    92     8    92 0.95 MerR HTH family regulatory protein
FAD_binding_3        PF01494.14   356 sp|P31456|CBRA_ECOLI -            354     1e-09   37.9   0.1   1   2   4.8e-05       0.1   11.6   0.0     2    34     4    35     3    41 0.91 FAD binding domain
FAD_binding_3        PF01494.14   356 sp|P31456|CBRA_ECOLI -            354     1e-09   37.9   0.1   2   2   6.8e-09   1.4e-05   24.2   0.0   148   179   135   166   112   235 0.83 FAD binding domain
Lycopene_cycl        PF05834.7    374 sp|P31456|CBRA_ECOLI -            354   6.6e-05   21.9   0.3   1   2     7e-05      0.15   10.9   0.1     1    35     5    36     5    43 0.88 Lycopene cyclase protein
Lycopene_cycl        PF05834.7    374 sp|P31456|CBRA_ECOLI -            354   6.6e-05   21.9   0.3   2   2   0.00025      0.53    9.1   0.0    66   143    80   160    68   178 0.83 Lycopene cyclase protein
Pyr_redox_2          PF07992.9    201 sp|P31456|CBRA_ECOLI -            354     0.014   15.2   0.2   1   1   1.1e-05     0.023   14.5   0.2     1    35     5    37     5   162 0.89 Pyridine nucleotide-disulphide oxidoreductase
DAO                  PF01266.19   358 sp|P31456|CBRA_ECOLI -            354     0.015   14.2   0.0   1   2   0.00011      0.24   10.2   0.0     1    68     5   106     5   109 0.70 FAD dependent oxidoreductase
GHL1-3               PF11308.3    307 sp|P31456|CBRA_ECOLI -            354     0.069   12.4   0.2   1   1   7.8e-05      0.17   11.2   0.1   175   235   146   208   135   211 0.80 Glycosyl hydrolases related to GH101 family, GHL1-GHL3
TrkA_N               PF02254.13   116 sp|P31456|CBRA_ECOLI -            354      0.11   12.4   0.0   1   1     9e-05      0.19   11.7   0.0     1    31     6    35     6    40 0.89 TrkA-N domain
2-Hacid_dh_C         PF02826.14   178 sp|P31456|CBRA_ECOLI -            354      0.14   11.2   0.0   1   1   0.00011      0.23   10.5   0.0    38    70     5    36     1    45 0.87 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
UPF0167              PF03691.9    176 sp|P31469|CBRC_ECOLI -            195   4.1e-78  260.7   7.7   1   1   3.5e-82   5.2e-78  260.4   7.7     3   176     6   195     4   195 0.98 Uncharacterised protein family (UPF0167)
DUF1219              PF06755.7    117 sp|P64524|CBTA_ECOLI -            124   3.9e-60  200.5   0.0   1   1     3e-64   4.4e-60  200.3   0.0     1   113     1   113     1   123 0.98 Protein of unknown function (DUF1219)
PolyA_pol            PF01743.15   126 sp|P06961|CCA_ECOLI  -            412   2.8e-28   98.6   0.0   1   1   1.3e-31   6.7e-28   97.4   0.0     1   126     3   122     3   122 0.88 Poly A polymerase head domain
PolyA_pol_RNAbd      PF12627.2     64 sp|P06961|CCA_ECOLI  -            412   2.1e-17   62.4   0.1   1   1   1.2e-20   5.8e-17   61.0   0.1     1    62   149   212   149   214 0.97 Probable RNA and SrmB- binding site of polymerase A
HD                   PF01966.17   122 sp|P06961|CCA_ECOLI  -            412   4.4e-13   49.3   0.1   2   2   5.7e-16   2.8e-12   46.6   0.0     2   121   229   328   228   329 0.96 HD domain
ABC_tran             PF00005.22   137 sp|P33931|CCMA_ECOLI -            207   1.6e-32  112.6   0.0   1   1     3e-35   2.3e-32  112.1   0.0     3   136    21   156    19   157 0.97 ABC transporter
AAA_21               PF13304.1    303 sp|P33931|CCMA_ECOLI -            207   6.1e-10   39.5   0.0   1   2   2.7e-06    0.0021   18.0   0.0     4    24    34    54    34    87 0.82 AAA domain
AAA_21               PF13304.1    303 sp|P33931|CCMA_ECOLI -            207   6.1e-10   39.5   0.0   2   2   8.7e-07   0.00068   19.6   0.0   231   300   123   189   120   189 0.95 AAA domain
SMC_N                PF02463.14   220 sp|P33931|CCMA_ECOLI -            207     2e-05   23.9   0.0   2   2   5.6e-06    0.0044   16.2   0.0   131   211   123   199    83   206 0.78 RecF/RecN/SMC N terminal domain
DUF3584              PF12128.3   1201 sp|P33931|CCMA_ECOLI -            207   0.00056   17.4   0.5   1   1   9.5e-07   0.00074   17.0   0.5    14    37    26    49    20    50 0.88 Protein of unknown function (DUF3584)
AAA_29               PF13555.1     62 sp|P33931|CCMA_ECOLI -            207    0.0023   17.4   0.1   1   1   5.6e-06    0.0044   16.5   0.1    12    40    19    46    15    56 0.84 P-loop containing region of AAA domain
AAA_30               PF13604.1    196 sp|P33931|CCMA_ECOLI -            207     0.008   15.7   0.3   1   1   8.6e-05     0.067   12.7   0.3    18    50    29    61    22   205 0.63 AAA domain
AAA_16               PF13191.1    185 sp|P33931|CCMA_ECOLI -            207    0.0087   16.0   0.6   1   1   3.3e-05     0.026   14.5   0.6    12    56    18    61    12   154 0.67 AAA ATPase domain
AAA_23               PF13476.1    202 sp|P33931|CCMA_ECOLI -            207     0.012   15.9   0.3   1   1   2.3e-05     0.018   15.4   0.3    24    39    34    49    19    52 0.86 AAA domain
UPF0079              PF02367.12   123 sp|P33931|CCMA_ECOLI -            207     0.014   15.0   0.2   1   2    0.0001     0.078   12.6   0.1     9    35    23    49    16    60 0.85 Uncharacterised P-loop hydrolase UPF0079
AAA_25               PF13481.1    194 sp|P33931|CCMA_ECOLI -            207     0.016   14.6   0.3   1   1   4.7e-05     0.037   13.4   0.3    30   109    26   103    12   188 0.68 AAA domain
DUF258               PF03193.11   161 sp|P33931|CCMA_ECOLI -            207     0.016   14.3   0.0   1   1   3.1e-05     0.024   13.7   0.0    16    66     9    60     2    97 0.84 Protein of unknown function, DUF258
AAA_28               PF13521.1    163 sp|P33931|CCMA_ECOLI -            207     0.024   14.5   0.0   1   1   6.3e-05     0.049   13.5   0.0     2    22    32    52    31    71 0.83 AAA domain
cobW                 PF02492.14   178 sp|P33931|CCMA_ECOLI -            207     0.035   13.5   0.1   1   1   7.9e-05     0.061   12.7   0.1     4    21    33    50    31    59 0.85 CobW/HypB/UreG, nucleotide-binding domain
Miro                 PF08477.8    119 sp|P33931|CCMA_ECOLI -            207     0.076   13.5   0.0   1   1   0.00018      0.14   12.6   0.0     2    25    32    55    32   103 0.85 Miro-like protein
AAA_13               PF13166.1    712 sp|P33931|CCMA_ECOLI -            207      0.08   11.4   0.0   1   1   0.00014      0.11   10.9   0.0    23    41    36    54    30    71 0.86 AAA domain
AAA_17               PF13207.1    121 sp|P33931|CCMA_ECOLI -            207     0.096   13.5   0.2   1   1   0.00023      0.18   12.6   0.2     4    19    34    49    32   199 0.83 AAA domain
AAA_18               PF13238.1    129 sp|P33931|CCMA_ECOLI -            207      0.11   12.8   0.3   1   1   0.00036      0.28   11.4   0.3     3    19    34    50    32   202 0.87 AAA domain
CcmB                 PF03379.8    215 sp|P0ABL8|CCMB_ECOLI -            220   2.6e-87  291.5  20.9   1   1     6e-91     3e-87  291.3  20.9     1   215     3   217     3   217 0.99 CcmB protein
ABC2_membrane        PF01061.19   210 sp|P0ABL8|CCMB_ECOLI -            220    0.0016   17.6  11.1   1   1   3.3e-07    0.0016   17.6  11.1     7   174     3   170     1   188 0.78 ABC-2 type transporter
Cytochrom_C_asm      PF01578.15   214 sp|P0ABM1|CCMC_ECOLI -            245   1.2e-32  113.2  24.9   1   2     8e-37   1.2e-32  113.2  24.9     5   214     9   184     5   184 0.94 Cytochrome C assembly protein
CcmD                 PF04995.9     46 sp|P0ABM5|CCMD_ECOLI -             69   5.7e-16   57.9   4.7   1   1   6.2e-20   9.2e-16   57.3   4.7     1    45    15    59    15    69 0.98 Heme exporter protein D (CcmD)
CcmE                 PF03100.10   131 sp|P69490|CCME_ECOLI -            159   9.1e-51  170.8   0.0   1   1   7.7e-55   1.1e-50  170.5   0.0     3   131     4   138     2   138 0.97 CcmE
Cytochrom_C_asm      PF01578.15   214 sp|P33927|CCMF_ECOLI -            647   6.4e-55  186.0  19.2   2   3   1.7e-58   6.4e-55  186.0  19.2     1   208    89   296    89   299 0.98 Cytochrome C assembly protein
ResB                 PF05140.9    464 sp|P33927|CCMF_ECOLI -            647   0.00044   18.9   4.3   2   4   1.8e-06    0.0065   15.0   0.0   140   190   477   527   469   539 0.90 ResB-like family
Laminin_G_3          PF13385.1    157 sp|P33927|CCMF_ECOLI -            647       7.5    6.7   6.9   1   2   0.00026      0.96    9.6   0.5    37   100    30    95    22   100 0.69 Concanavalin A-like lectin/glucanases superfamily
CcmH                 PF03918.9    148 sp|P0ABM9|CCMH_ECOLI -            350     8e-53  177.4   0.1   1   2   3.1e-55   4.2e-52  175.0   0.0     2   132     4   132     1   146 0.90 Cytochrome C biogenesis protein
TPR_2                PF07719.12    34 sp|P0ABM9|CCMH_ECOLI -            350   4.4e-08   32.4   0.1   2   3   0.00059      0.79    9.7   0.0     2    34   223   255   222   255 0.95 Tetratricopeptide repeat
TPR_2                PF07719.12    34 sp|P0ABM9|CCMH_ECOLI -            350   4.4e-08   32.4   0.1   3   3   0.00012      0.16   11.9   0.0     3    34   295   326   293   326 0.92 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P0ABM9|CCMH_ECOLI -            350   6.4e-07   29.8   7.4   2   4   0.00039      0.52   11.0   0.0    24    64   215   255   212   256 0.92 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P0ABM9|CCMH_ECOLI -            350   6.4e-07   29.8   7.4   3   4   3.6e-06    0.0048   17.5   0.4     8    48   233   273   226   278 0.88 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P0ABM9|CCMH_ECOLI -            350   6.4e-07   29.8   7.4   4   4   0.00065      0.87   10.3   0.1    19    64   281   326   280   327 0.89 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|P0ABM9|CCMH_ECOLI -            350   5.4e-06   26.5   4.9   2   3   7.6e-06      0.01   16.3   0.1     2    43   223   264   222   265 0.95 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P0ABM9|CCMH_ECOLI -            350   1.6e-05   25.1   5.8   3   4   1.4e-07   0.00019   21.6   0.1     2    66   233   300   232   302 0.86 Tetratricopeptide repeat
TPR_11               PF13414.1     69 sp|P0ABM9|CCMH_ECOLI -            350   7.8e-05   22.2   0.2   2   3   0.00022      0.29   10.7   0.0     7    51   226   270   220   276 0.84 TPR repeat
Fis1_TPR_N           PF14852.1     35 sp|P0ABM9|CCMH_ECOLI -            350     0.082   12.2   0.0   1   1   0.00013      0.17   11.2   0.0     7    34   262   289   261   290 0.93 Fis1 N-terminal tetratricopeptide repeat
DUF3797              PF12677.2     49 sp|P0ABM9|CCMH_ECOLI -            350     0.087   12.4   0.0   1   1   0.00012      0.16   11.5   0.0    15    31    42    58    32    63 0.82 Domain of unknown function (DUF3797)
Diacid_rec           PF05651.8    135 sp|P37047|CDAR_ECOLI -            385   2.1e-52  176.1   0.9   1   1     7e-56   3.5e-52  175.4   0.9     1   135     6   140     6   140 0.99 Putative sugar diacid recognition
HTH_30               PF13556.1     59 sp|P37047|CDAR_ECOLI -            385   3.2e-23   81.0   2.8   2   2     9e-26   4.5e-22   77.4   2.4     1    59   323   381   323   381 0.98 PucR C-terminal helix-turn-helix domain
GAF_2                PF13185.1    148 sp|P37047|CDAR_ECOLI -            385     0.044   14.2   0.0   1   1   2.2e-05      0.11   12.9   0.0    70   125    48    99    25   118 0.67 GAF domain
dCMP_cyt_deam_2      PF08211.6    124 sp|P0ABF6|CDD_ECOLI  -            294   2.5e-50  169.6   0.2   2   2   1.7e-51   5.1e-48  162.1   0.0     1   123   157   278   157   279 0.98 Cytidine and deoxycytidylate deaminase zinc-binding region
dCMP_cyt_deam_1      PF00383.17   102 sp|P0ABF6|CDD_ECOLI  -            294   1.5e-17   63.0   0.0   1   2   1.1e-17   3.4e-14   52.3   0.0    10    93    56   139    47   143 0.86 Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam          PF14437.1    146 sp|P0ABF6|CDD_ECOLI  -            294    0.0032   17.0   0.0   1   1   1.8e-06    0.0054   16.3   0.0    78   127    98   145    73   155 0.88 MafB19-like deaminase
DYW_deaminase        PF14432.1    116 sp|P0ABF6|CDD_ECOLI  -            294     0.014   15.4   0.0   1   1   7.4e-06     0.022   14.7   0.0    62   112   101   155    90   158 0.86 DYW family of nucleic acid deaminases
Pput2613-deam        PF14427.1    118 sp|P0ABF6|CDD_ECOLI  -            294       0.1   12.2   0.0   1   1   5.6e-05      0.17   11.5   0.0    50    98   102   149    81   161 0.76 Pput_2613-like deaminase
CDH                  PF02611.10   222 sp|P06282|CDH_ECOLI  -            251   5.9e-96  319.9   0.0   1   1  4.5e-100   6.7e-96  319.8   0.0     2   221    31   250    30   251 0.99 CDP-diacylglycerol pyrophosphatase
CTP_transf_1         PF01148.15   259 sp|P0ABG1|CDSA_ECOLI -            285   1.4e-63  214.9  19.9   1   1   6.7e-67   1.7e-63  214.7  19.9     2   257     4   279     3   281 0.88 Cytidylyltransferase family
DUF46                PF01864.12   175 sp|P0ABG1|CDSA_ECOLI -            285    0.0054   16.6   0.4   2   2   2.2e-06    0.0054   16.6   0.4    44   132   184   270   153   283 0.76 Putative integral membrane protein DUF46
DUF4131              PF13567.1    176 sp|P0ABG1|CDSA_ECOLI -            285     0.018   14.4  31.4   1   3   2.8e-05      0.07   12.5   7.7     5    67    16    82    13    89 0.91 Domain of unknown function (DUF4131)
DUF4131              PF13567.1    176 sp|P0ABG1|CDSA_ECOLI -            285     0.018   14.4  31.4   2   3   3.3e-05     0.082   12.3   7.2     9    71    90   151    84   163 0.81 Domain of unknown function (DUF4131)
DUF1705              PF08019.7    156 sp|P0ABG1|CDSA_ECOLI -            285       4.2    6.8   9.1   1   1   4.3e-05      0.11   12.0   1.6    71   134    58   121    50   133 0.90 Domain of unknown function (DUF1705)
CedA                 PF10729.4     80 sp|P0AE60|CEDA_ECOLI -             80   3.2e-54  180.4   0.5   1   1   2.4e-58   3.5e-54  180.2   0.5     1    80     1    80     1    80 0.99 Cell division activator CedA
CMAS                 PF02353.15   273 sp|P0A9H7|CFA_ECOLI  -            382  1.9e-106  355.1   0.2   1   1  3.7e-109  2.6e-106  354.6   0.2     2   273   108   368   107   368 0.98 Mycolic acid cyclopropane synthetase
Methyltransf_23      PF13489.1    161 sp|P0A9H7|CFA_ECOLI  -            382   5.6e-15   55.4   0.0   1   1   1.3e-17   9.5e-15   54.6   0.0    13   124   156   275   143   303 0.74 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|P0A9H7|CFA_ECOLI  -            382   9.5e-13   48.4   0.0   1   1   2.5e-15   1.8e-12   47.5   0.0     1    94   172   264   172   265 0.97 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P0A9H7|CFA_ECOLI  -            382   5.7e-11   42.2   0.0   1   1   1.3e-13   9.3e-11   41.5   0.0     2   112   166   269   165   329 0.85 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P0A9H7|CFA_ECOLI  -            382   9.2e-11   42.3   0.0   1   1   3.3e-13   2.3e-10   41.0   0.0     1   111   167   267   167   268 0.91 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|P0A9H7|CFA_ECOLI  -            382   4.4e-08   33.4   0.0   1   1   1.3e-10   9.1e-08   32.4   0.0     1    99   172   263   172   263 0.83 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P0A9H7|CFA_ECOLI  -            382   2.3e-07   31.0   0.0   1   1   6.5e-10   4.6e-07   30.1   0.0     1   101   171   261   171   261 0.90 Methyltransferase domain
PCMT                 PF01135.14   210 sp|P0A9H7|CFA_ECOLI  -            382   4.2e-06   26.4   0.0   1   1   8.8e-09   6.2e-06   25.8   0.0    61   123   155   215   135   230 0.82 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
MTS                  PF05175.9    170 sp|P0A9H7|CFA_ECOLI  -            382   3.1e-05   23.4   0.0   1   1   7.2e-08   5.1e-05   22.7   0.0    22   104   158   234   152   265 0.81 Methyltransferase small domain
Methyltransf_26      PF13659.1    117 sp|P0A9H7|CFA_ECOLI  -            382   0.00019   21.4   0.0   1   1   8.6e-07   0.00061   19.8   0.0     2    77   169   235   168   338 0.68 Methyltransferase domain
MetW                 PF07021.7    193 sp|P0A9H7|CFA_ECOLI  -            382   0.00068   19.0   0.1   1   1   1.6e-06    0.0012   18.3   0.1    11    59   165   215   153   235 0.74 Methionine biosynthesis protein MetW
TPMT                 PF05724.6    218 sp|P0A9H7|CFA_ECOLI  -            382    0.0014   18.1   0.0   1   1   3.9e-05     0.027   13.8   0.0    24   162   154   274   146   285 0.66 Thiopurine S-methyltransferase (TPMT)
TehB                 PF03848.9    192 sp|P0A9H7|CFA_ECOLI  -            382    0.0024   17.0   0.0   1   1   4.9e-06    0.0034   16.5   0.0    23   108   160   242   140   272 0.73 Tellurite resistance protein TehB
Methyltransf_32      PF13679.1    141 sp|P0A9H7|CFA_ECOLI  -            382    0.0028   17.3   0.0   1   1   6.5e-06    0.0046   16.6   0.0    21    77   163   214   150   241 0.86 Methyltransferase domain
FtsJ                 PF01728.14   181 sp|P0A9H7|CFA_ECOLI  -            382    0.0035   17.3   0.0   1   1   8.4e-06    0.0059   16.6   0.0     8   110   155   247   151   274 0.72 FtsJ-like methyltransferase
DOT1                 PF08123.8    205 sp|P0A9H7|CFA_ECOLI  -            382     0.018   14.3   0.1   1   1   4.8e-05     0.034   13.4   0.1    31    87   156   211   150   221 0.91 Histone methylation protein DOT1
RrnaAD               PF00398.15   262 sp|P0A9H7|CFA_ECOLI  -            382     0.035   13.1   0.0   1   1   9.3e-05     0.066   12.2   0.0    19    85   156   222   151   231 0.81 Ribosomal RNA adenine dimethylase
Methyltransf_9       PF08003.6    315 sp|P0A9H7|CFA_ECOLI  -            382     0.074   11.7   0.0   1   1   0.00016      0.11   11.1   0.0   111   220   163   268   146   283 0.71 Protein of unknown function (DUF1698)
Methyltransf_15      PF09445.5    164 sp|P0A9H7|CFA_ECOLI  -            382     0.091   12.3   0.0   1   1   0.00021      0.14   11.6   0.0     3    47   170   215   168   235 0.89 RNA cap guanine-N2 methyltransferase
Methyltransf_4       PF02390.12   197 sp|P0A9H7|CFA_ECOLI  -            382      0.11   11.5   0.0   1   1   0.00025      0.18   10.8   0.0    21    66   162   213   139   233 0.75 Putative methyltransferase
GCD14                PF08704.5    247 sp|P0A9H7|CFA_ECOLI  -            382      0.13   11.7   0.0   1   1   0.00028       0.2   11.1   0.0    29    60   156   187   152   213 0.87 tRNA methyltransferase complex GCD14 subunit
Cpn10                PF00166.16    93 sp|P0A6F9|CH10_ECOLI -             97   5.6e-29   99.9   1.8   1   1   4.2e-33   6.2e-29   99.7   1.8     1    93     2    95     2    95 0.97 Chaperonin 10 Kd subunit
Cpn60_TCP1           PF00118.19   485 sp|P0A6F5|CH60_ECOLI -            548  6.3e-128  427.4  10.8   1   1  4.8e-132  7.2e-128  427.2  10.8     1   483    23   523    23   525 0.94 TCP-1/cpn60 chaperonin family
Na_Ca_ex             PF01699.19   140 sp|P31801|CHAA_ECOLI -            366   1.2e-09   37.8  11.9   3   3   1.6e-13   1.2e-09   37.8  11.9     1   139   232   363   212   364 0.91 Sodium/calcium exchanger protein
FA_desaturase        PF00487.19   257 sp|P31801|CHAA_ECOLI -            366       1.4    8.2  13.3   2   3   2.6e-06     0.019   14.3   1.5    93   208   102   223    92   232 0.50 Fatty acid desaturase
ChaC                 PF04752.7    178 sp|P39163|CHAC_ECOLI -            231   4.5e-53  179.8   0.0   1   1   7.4e-57   5.5e-53  179.5   0.0     1   177    47   215    47   216 0.95 ChaC-like protein
AIG2                 PF06094.7    102 sp|P39163|CHAC_ECOLI -            231     0.014   15.8   0.0   1   1   3.1e-06     0.023   15.2   0.0     1   101    49   155    49   156 0.71 AIG2-like family
Glyco_hydro_4        PF02056.11   183 sp|P17411|CHBF_ECOLI -            450   1.3e-76  255.9   0.0   1   1   3.9e-80   1.9e-76  255.4   0.0     1   182     6   187     6   188 0.99 Family 4 glycosyl hydrolase
Glyco_hydro_4C       PF11975.3    232 sp|P17411|CHBF_ECOLI -            450   1.8e-72  243.9   0.0   1   1   4.6e-76   2.3e-72  243.5   0.0     1   232   192   415   192   415 0.99 Family 4 glycosyl hydrolase C-terminal domain
Ldh_1_N              PF00056.18   141 sp|P17411|CHBF_ECOLI -            450    0.0057   16.4   0.0   2   2   4.8e-06     0.024   14.4   0.0    96   135   127   166   123   169 0.91 lactate/malate dehydrogenase, NAD binding domain
YdjC                 PF04794.7    261 sp|P37794|CHBG_ECOLI -            249   6.6e-69  232.2   0.0   1   1     5e-73   7.5e-69  232.0   0.0     2   260     4   238     3   239 0.92 YdjC-like protein
CheZ                 PF04344.8    214 sp|P0A9H9|CHEZ_ECOLI -            214   8.5e-76  254.3   5.4   1   1   6.7e-80   9.9e-76  254.1   5.4     3   214    16   214    14   214 0.95 Chemotaxis phosphatase, CheZ
CBM_5_12             PF02839.9     41 sp|P13656|CHIA_ECOLI -            897   1.7e-22   78.6  53.5   1   7   3.6e-06     0.027   14.0   2.1    15    36    38    59    31    70 0.76 Carbohydrate binding domain
CBM_5_12             PF02839.9     41 sp|P13656|CHIA_ECOLI -            897   1.7e-22   78.6  53.5   3   7   3.1e-05      0.23   11.0   2.6    16    41   243   274   242   274 0.75 Carbohydrate binding domain
CBM_5_12             PF02839.9     41 sp|P13656|CHIA_ECOLI -            897   1.7e-22   78.6  53.5   4   7   5.9e-05      0.44   10.1   1.5    16    32   351   367   350   382 0.75 Carbohydrate binding domain
CBM_5_12             PF02839.9     41 sp|P13656|CHIA_ECOLI -            897   1.7e-22   78.6  53.5   6   7   6.5e-16   4.8e-12   45.2   3.6     2    40   460   507   459   508 0.86 Carbohydrate binding domain
CBM_5_12             PF02839.9     41 sp|P13656|CHIA_ECOLI -            897   1.7e-22   78.6  53.5   7   7   8.4e-06     0.063   12.8   0.0     1    41   525   564   525   564 0.96 Carbohydrate binding domain
OprD                 PF03573.8    391 sp|P75733|CHIP_ECOLI -            468   2.4e-25   89.1  12.3   1   1   4.1e-29     3e-25   88.8  12.3     1   365    33   431    33   443 0.83 outer membrane porin, OprD family
OMP_b-brl_2          PF13568.1    173 sp|P75733|CHIP_ECOLI -            468     0.023   14.5   0.3   2   3   3.1e-06     0.023   14.5   0.3   107   164   175   240   157   243 0.75 Outer membrane protein beta-barrel domain
Antitoxin-MazE       PF04014.13    47 sp|P08365|CHPS_ECOLI -             83   4.6e-09   35.8   0.0   1   1   9.3e-13   6.9e-09   35.2   0.0     1    45     6    49     6    51 0.94 Antidote-toxin recognition MazE
Methyltransf_33      PF10017.4    127 sp|P08365|CHPS_ECOLI -             83    0.0048   16.7   0.0   1   1   7.2e-07    0.0053   16.6   0.0    75   119    29    75     5    78 0.82 Histidine-specific methyltransferase, SAM-dependent
PemK                 PF02452.12   110 sp|P33647|CHPB_ECOLI -            116   1.6e-20   73.3   0.0   1   1   1.2e-24   1.8e-20   73.1   0.0     1   109     8   114     8   115 0.93 PemK-like protein
FMN_red              PF03358.10   152 sp|P0AGE6|CHRR_ECOLI -            188   4.5e-39  133.3   0.0   1   1   7.8e-43   5.8e-39  133.0   0.0     2   146     6   148     5   153 0.94 NADPH-dependent FMN reductase
Flavodoxin_2         PF02525.12   199 sp|P0AGE6|CHRR_ECOLI -            188   7.8e-09   35.3   0.0   1   1   1.5e-12   1.1e-08   34.8   0.0     9   135    13   117     6   143 0.69 Flavodoxin-like fold
MoCF_biosynth        PF00994.19   144 sp|P77808|CINAL_ECOLI -            400   7.9e-31  106.4   0.0   1   2   1.1e-33   8.1e-30  103.1   0.0     2   143     6   170     5   171 0.95 Probable molybdopterin binding domain
CinA                 PF02464.12   155 sp|P77808|CINAL_ECOLI -            400   5.4e-05   22.6   0.6   1   2   3.5e-06     0.026   13.9   0.1     3    36   254   287   252   290 0.90 Competence-damaged protein
TonB_dep_Rec         PF00593.19   277 sp|P17315|CIRA_ECOLI -            663   9.2e-35  120.9  11.9   1   1   1.9e-38   9.2e-35  120.9  11.9     1   277   395   662   395   662 0.88 TonB dependent receptor
Plug                 PF07715.10   108 sp|P17315|CIRA_ECOLI -            663   8.1e-34  116.2   1.3   1   2   4.7e-37   2.3e-33  114.7   0.1     2   108    44   152    43   152 0.98 TonB-dependent Receptor Plug Domain
OMP_b-brl_3          PF14905.1    506 sp|P17315|CIRA_ECOLI -            663     1e-14   54.1  11.3   1   1   9.2e-18   4.5e-14   52.0  11.3    37   478   203   652   198   663 0.74 Outer membrane protein beta-barrel family
Citrate_synt         PF00285.16   356 sp|P0ABH7|CISY_ECOLI -            427  9.4e-134  445.6   0.0   1   1  7.2e-138  1.1e-133  445.4   0.0     1   356    46   409    46   409 0.99 Citrate synthase
ACP                  PF06857.6     87 sp|P69330|CITD_ECOLI -             98   1.3e-33  114.7   0.1   1   1     2e-37   1.5e-33  114.5   0.1     1    86     2    87     2    88 0.98 Malonate decarboxylase delta subunit (MdcD)
DUF1697              PF08002.6    137 sp|P69330|CITD_ECOLI -             98     0.099   12.6   0.0   1   1     2e-05      0.15   12.1   0.0    36    78     8    51     2    57 0.92 Protein of unknown function (DUF1697)
HpcH_HpaI            PF03328.9    221 sp|P0A9I1|CITE_ECOLI -            302   1.6e-81  272.3   0.2   1   2   8.2e-85   6.1e-81  270.5   0.1     1   221    15   234    15   234 0.99 HpcH/HpaI aldolase/citrate lyase family
C-C_Bond_Lyase       PF15617.1    346 sp|P0A9I1|CITE_ECOLI -            302   1.8e-10   40.1   0.0   3   3   8.6e-12   6.4e-08   31.7   0.0   249   337   210   301   186   302 0.83 C-C_Bond_Lyase of the TIM-Barrel fold
CitG                 PF01874.11   275 sp|P77231|CITG_ECOLI -            292   4.9e-84  281.7   0.0   1   1   3.9e-88   5.7e-84  281.5   0.0     5   274    24   290    20   291 0.97 ATP:dephospho-CoA triphosphoribosyl transferase
Na_sulph_symp        PF00939.14   471 sp|P0AE74|CITT_ECOLI -            487  1.8e-182  607.4  37.5   1   1  4.1e-186    2e-182  607.2  37.5     2   471     6   486     5   486 0.99 Sodium:sulfate symporter transmembrane region
Adipogenin           PF15202.1     81 sp|P0AE74|CITT_ECOLI -            487       1.7    8.5   6.4   1   2   6.2e-05      0.31   10.9   1.1     9    42   226   260   220   273 0.82 Adipogenin
CitX                 PF03802.9    171 sp|P0A6G5|CITX_ECOLI -            183   1.4e-60  203.5   0.0   1   1   1.1e-64   1.6e-60  203.4   0.0     2   170    12   180    11   181 0.98 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
Voltage_CLC          PF00654.15   355 sp|P37019|CLCA_ECOLI -            473     7e-91  304.8  36.0   1   2   2.2e-06     0.033   13.2   1.0   159   219    31    95    12    98 0.70 Voltage gated chloride channel
Voltage_CLC          PF00654.15   355 sp|P37019|CLCA_ECOLI -            473     7e-91  304.8  36.0   2   2   5.7e-93   8.4e-89  298.0  30.2     2   354    89   437    88   438 0.94 Voltage gated chloride channel
Voltage_CLC          PF00654.15   355 sp|P76175|CLCB_ECOLI -            418   5.5e-73  246.0  33.8   2   2   3.7e-77   5.5e-73  246.0  33.8     4   354    62   402    59   403 0.91 Voltage gated chloride channel
AAA_2                PF07724.9    171 sp|P0ABH9|CLPA_ECOLI -            758   2.8e-51  173.8   0.0   1   2    0.0017      0.83    9.5   0.0     4    88   208   299   205   330 0.73 AAA domain (Cdc48 subfamily)
AAA_2                PF07724.9    171 sp|P0ABH9|CLPA_ECOLI -            758   2.8e-51  173.8   0.0   2   2   3.3e-50   1.6e-47  161.5   0.0     1   171   486   647   486   647 0.97 AAA domain (Cdc48 subfamily)
ClpB_D2-small        PF10431.4     81 sp|P0ABH9|CLPA_ECOLI -            758   5.5e-25   87.0   0.0   1   1   3.3e-27   1.6e-24   85.5   0.0     1    81   653   733   653   733 0.98 C-terminal, D2-small domain, of ClpB protein
AAA                  PF00004.24   132 sp|P0ABH9|CLPA_ECOLI -            758   1.9e-24   86.3   0.1   1   2   8.7e-16   4.3e-13   49.6   0.0     2   125   211   342   210   347 0.76 ATPase family associated with various cellular activities (AAA)
AAA                  PF00004.24   132 sp|P0ABH9|CLPA_ECOLI -            758   1.9e-24   86.3   0.1   2   2   1.2e-10   6.1e-08   32.9   0.0     2   111   492   607   491   621 0.85 ATPase family associated with various cellular activities (AAA)
AAA_5                PF07728.9    139 sp|P0ABH9|CLPA_ECOLI -            758   4.5e-19   68.5   0.0   1   2   1.5e-05    0.0076   15.9   0.0     3    76   211   289   209   293 0.80 AAA domain (dynein-related subfamily)
AAA_5                PF07728.9    139 sp|P0ABH9|CLPA_ECOLI -            758   4.5e-19   68.5   0.0   2   2   6.1e-16     3e-13   49.6   0.0     2   125   491   609   490   619 0.89 AAA domain (dynein-related subfamily)
Clp_N                PF02861.15    53 sp|P0ABH9|CLPA_ECOLI -            758   2.4e-16   59.3   1.3   1   2   2.1e-17   1.1e-14   54.1   0.9     1    52    13    62    13    63 0.97 Clp amino terminal domain
Sigma54_activat      PF00158.21   168 sp|P0ABH9|CLPA_ECOLI -            758   1.6e-12   47.2   0.2   1   2   1.9e-07   9.4e-05   21.9   0.0     2   105   189   290   188   328 0.85 Sigma-54 interaction domain
Sigma54_activat      PF00158.21   168 sp|P0ABH9|CLPA_ECOLI -            758   1.6e-12   47.2   0.2   2   2   8.3e-08   4.1e-05   23.1   0.0    22   148   484   612   460   618 0.77 Sigma-54 interaction domain
AAA_16               PF13191.1    185 sp|P0ABH9|CLPA_ECOLI -            758   1.1e-09   38.6   8.8   1   3   4.7e-07   0.00023   21.1   0.1     2    45   188   228   187   249 0.87 AAA ATPase domain
AAA_16               PF13191.1    185 sp|P0ABH9|CLPA_ECOLI -            758   1.1e-09   38.6   8.8   3   3   1.8e-05    0.0088   16.0   0.0     3    48   461   512   459   537 0.88 AAA ATPase domain
AAA_17               PF13207.1    121 sp|P0ABH9|CLPA_ECOLI -            758   8.9e-08   32.9   0.8   2   2   1.8e-06   0.00088   20.0   0.1     3    34   492   525   491   701 0.86 AAA domain
AAA_22               PF13401.1    131 sp|P0ABH9|CLPA_ECOLI -            758     1e-07   32.1   1.9   1   2   5.3e-06    0.0026   17.8   0.1     8   125   211   324   204   331 0.76 AAA domain
AAA_22               PF13401.1    131 sp|P0ABH9|CLPA_ECOLI -            758     1e-07   32.1   1.9   2   2   0.00076      0.38   10.9   0.3     6   114   490   593   486   610 0.78 AAA domain
AAA_18               PF13238.1    129 sp|P0ABH9|CLPA_ECOLI -            758   4.2e-06   27.1   0.1   2   2   4.3e-05     0.021   15.1   0.0     3    36   493   526   492   540 0.86 AAA domain
IstB_IS21            PF01695.12   178 sp|P0ABH9|CLPA_ECOLI -            758   7.1e-06   25.5   0.0   1   2   1.5e-05    0.0074   15.7   0.0    45    76   205   236   191   337 0.76 IstB-like ATP binding protein
AAA_14               PF13173.1    128 sp|P0ABH9|CLPA_ECOLI -            758   9.2e-06   25.5   0.0   1   2   7.5e-05     0.037   13.9   0.0     6   126   211   353   206   355 0.65 AAA domain
TIP49                PF06068.8    398 sp|P0ABH9|CLPA_ECOLI -            758   9.9e-06   24.5   0.1   1   2    0.0003      0.15   10.7   0.0    54    93   211   250   186   260 0.83 TIP49 C-terminus
TIP49                PF06068.8    398 sp|P0ABH9|CLPA_ECOLI -            758   9.9e-06   24.5   0.1   2   2   0.00028      0.14   10.8   0.0    26    77   460   515   439   526 0.77 TIP49 C-terminus
RuvB_N               PF05496.7    234 sp|P0ABH9|CLPA_ECOLI -            758   1.4e-05   24.2   5.2   2   3    0.0002     0.097   11.7   0.3    17    78   451   516   435   617 0.68 Holliday junction DNA helicase ruvB N-terminus
ResIII               PF04851.10   184 sp|P0ABH9|CLPA_ECOLI -            758   2.3e-05   24.3   0.1   3   3   0.00024      0.12   12.1   0.0     7    48   462   511   457   519 0.84 Type III restriction enzyme, res subunit
Zeta_toxin           PF06414.7    201 sp|P0ABH9|CLPA_ECOLI -            758   5.4e-05   22.3   0.7   2   2   2.2e-05     0.011   14.8   0.0    18   104   490   582   477   612 0.74 Zeta toxin
AAA_25               PF13481.1    194 sp|P0ABH9|CLPA_ECOLI -            758   0.00012   21.5   0.7   1   2    0.0018      0.91    8.8   0.0    37    61   211   235   194   288 0.84 AAA domain
AAA_25               PF13481.1    194 sp|P0ABH9|CLPA_ECOLI -            758   0.00012   21.5   0.7   2   2    0.0011      0.53    9.6   0.0    35    57   490   512   465   604 0.85 AAA domain
AAA_3                PF07726.6    131 sp|P0ABH9|CLPA_ECOLI -            758   0.00019   21.0   0.1   1   1     6e-06     0.003   17.1   0.1     3   113   492   609   490   615 0.73 ATPase family associated with various cellular activities (AAA)
AAA_6                PF12774.2    231 sp|P0ABH9|CLPA_ECOLI -            758   0.00045   19.8   0.0   1   1     2e-06   0.00098   18.7   0.0    37    74   493   530   467   547 0.89 Hydrolytic ATP binding site of dynein motor region D1
AAA_29               PF13555.1     62 sp|P0ABH9|CLPA_ECOLI -            758    0.0033   16.9   0.0   1   2    0.0011      0.57    9.7   0.0    19    40   203   224   195   231 0.82 P-loop containing region of AAA domain
Arch_ATPase          PF01637.13   234 sp|P0ABH9|CLPA_ECOLI -            758    0.0071   16.0   1.2   1   2    0.0012      0.61    9.7   0.0     2    36   189   223   188   243 0.80 Archaeal ATPase
NACHT                PF05729.7    166 sp|P0ABH9|CLPA_ECOLI -            758     0.031   13.9   0.1   1   1   0.00049      0.24   11.0   0.0     4    33   211   240   209   253 0.87 NACHT domain
IPT                  PF01745.11   233 sp|P0ABH9|CLPA_ECOLI -            758     0.096   11.8   0.0   1   1    0.0007      0.35   10.0   0.0     4    33   491   520   488   526 0.88 Isopentenyl transferase
AAA_2                PF07724.9    171 sp|P63284|CLPB_ECOLI -            857   3.7e-58  196.2   0.0   2   2   3.2e-58     1e-55  188.2   0.0     1   171   596   760   596   760 0.98 AAA domain (Cdc48 subfamily)
ClpB_D2-small        PF10431.4     81 sp|P63284|CLPB_ECOLI -            857   1.2e-28   98.8   2.2   1   1   5.8e-31   1.8e-28   98.2   0.3     1    80   766   845   766   846 0.98 C-terminal, D2-small domain, of ClpB protein
AAA                  PF00004.24   132 sp|P63284|CLPB_ECOLI -            857     6e-28   97.6   0.0   1   2   2.4e-16   7.7e-14   52.0   0.0     2   128   203   337   202   341 0.82 ATPase family associated with various cellular activities (AAA)
AAA                  PF00004.24   132 sp|P63284|CLPB_ECOLI -            857     6e-28   97.6   0.0   2   2   2.7e-13   8.6e-11   42.1   0.0     2   117   602   727   601   738 0.86 ATPase family associated with various cellular activities (AAA)
Clp_N                PF02861.15    53 sp|P63284|CLPB_ECOLI -            857   2.3e-27   94.6   6.1   1   2   1.4e-15   4.4e-13   48.9   0.2     1    53    17    69    17    69 0.98 Clp amino terminal domain
Clp_N                PF02861.15    53 sp|P63284|CLPB_ECOLI -            857   2.3e-27   94.6   6.1   2   2   2.1e-15   6.8e-13   48.3   0.1     1    53    94   145    94   145 0.96 Clp amino terminal domain
AAA_5                PF07728.9    139 sp|P63284|CLPB_ECOLI -            857   2.7e-19   69.2   0.8   1   2   4.6e-05     0.015   15.0   0.0     3    27   203   228   201   284 0.75 AAA domain (dynein-related subfamily)
AAA_5                PF07728.9    139 sp|P63284|CLPB_ECOLI -            857   2.7e-19   69.2   0.8   2   2   1.7e-15   5.2e-13   48.9   0.0     2   124   601   721   600   762 0.87 AAA domain (dynein-related subfamily)
AAA_16               PF13191.1    185 sp|P63284|CLPB_ECOLI -            857     3e-15   56.6   1.3   1   3   2.9e-07   9.3e-05   22.4   0.0     2    48   180   223   179   240 0.89 AAA ATPase domain
AAA_16               PF13191.1    185 sp|P63284|CLPB_ECOLI -            857     3e-15   56.6   1.3   2   3   0.00016      0.05   13.5   0.0   124   161   245   288   227   310 0.85 AAA ATPase domain
AAA_16               PF13191.1    185 sp|P63284|CLPB_ECOLI -            857     3e-15   56.6   1.3   3   3   0.00011     0.034   14.1   0.0     9    63   584   637   569   652 0.73 AAA ATPase domain
Sigma54_activat      PF00158.21   168 sp|P63284|CLPB_ECOLI -            857   8.2e-10   38.4   0.1   2   2   3.3e-09     1e-06   28.3   0.0    23   156   599   731   570   742 0.78 Sigma-54 interaction domain
AAA_22               PF13401.1    131 sp|P63284|CLPB_ECOLI -            857   8.1e-09   35.7   5.9   1   2   1.1e-05    0.0036   17.4   0.0     4    99   199   283   195   305 0.79 AAA domain
AAA_22               PF13401.1    131 sp|P63284|CLPB_ECOLI -            857   8.1e-09   35.7   5.9   2   2   0.00012     0.037   14.1   0.1     5   113   599   695   596   718 0.71 AAA domain
AAA_17               PF13207.1    121 sp|P63284|CLPB_ECOLI -            857     1e-07   32.7   3.4   1   2    0.0013      0.42   11.4   0.7     4    64   204   280   203   429 0.70 AAA domain
AAA_17               PF13207.1    121 sp|P63284|CLPB_ECOLI -            857     1e-07   32.7   3.4   2   2   1.2e-05    0.0038   18.0   0.0     6    43   605   664   601   770 0.61 AAA domain
AAA_18               PF13238.1    129 sp|P63284|CLPB_ECOLI -            857   1.4e-07   31.8   0.2   1   3   0.00072      0.23   11.7   0.1     3    35   204   272   203   288 0.66 AAA domain
AAA_18               PF13238.1    129 sp|P63284|CLPB_ECOLI -            857   1.4e-07   31.8   0.2   2   3   0.00041      0.13   12.5   0.0     3    20   603   620   602   653 0.77 AAA domain
IstB_IS21            PF01695.12   178 sp|P63284|CLPB_ECOLI -            857     1e-06   28.2   0.0   1   2   9.5e-05      0.03   13.7   0.0    45   104   197   260   163   282 0.78 IstB-like ATP binding protein
IstB_IS21            PF01695.12   178 sp|P63284|CLPB_ECOLI -            857     1e-06   28.2   0.0   2   2   0.00064       0.2   11.0   0.0    50    72   601   623   598   646 0.80 IstB-like ATP binding protein
RuvB_N               PF05496.7    234 sp|P63284|CLPB_ECOLI -            857   3.8e-05   22.8   1.9   2   2   0.00043      0.14   11.2   0.0    11    74   553   622   546   640 0.77 Holliday junction DNA helicase ruvB N-terminus
AAA_28               PF13521.1    163 sp|P63284|CLPB_ECOLI -            857   5.7e-05   23.1   0.8   1   2    0.0012      0.38   10.7   0.2     3   117   203   341   201   385 0.66 AAA domain
Zeta_toxin           PF06414.7    201 sp|P63284|CLPB_ECOLI -            857   0.00012   21.2   0.1   2   2   5.1e-05     0.016   14.3   0.0    19    60   601   653   584   691 0.82 Zeta toxin
AAA_25               PF13481.1    194 sp|P63284|CLPB_ECOLI -            857   0.00017   21.0   0.5   1   2    0.0007      0.22   10.8   0.0    37   107   203   276   179   310 0.73 AAA domain
Arch_ATPase          PF01637.13   234 sp|P63284|CLPB_ECOLI -            857   0.00025   20.8   5.7   1   3    0.0018      0.56    9.8   0.1     3    43   182   222   180   230 0.90 Archaeal ATPase
AAA_19               PF13245.1     76 sp|P63284|CLPB_ECOLI -            857   0.00065   19.4   0.1   1   2   0.00021     0.067   12.9   0.1     8    47   199   239   192   255 0.74 Part of AAA domain
ABC_tran             PF00005.22   137 sp|P63284|CLPB_ECOLI -            857   0.00068   19.9   0.7   2   2    0.0031      0.96    9.7   0.0    16    49   603   637   599   649 0.75 ABC transporter
DUF815               PF05673.8    250 sp|P63284|CLPB_ECOLI -            857    0.0009   18.2   0.9   1   2    0.0014      0.45    9.4   0.0    41    81   187   227   156   285 0.69 Protein of unknown function (DUF815)
NACHT                PF05729.7    166 sp|P63284|CLPB_ECOLI -            857    0.0011   18.6   0.0   1   2    0.0005      0.16   11.6   0.0     4    32   203   231   201   305 0.87 NACHT domain
AAA_3                PF07726.6    131 sp|P63284|CLPB_ECOLI -            857    0.0012   18.4   0.0   2   2    0.0029      0.92    9.1   0.0    63   111   671   719   600   723 0.59 ATPase family associated with various cellular activities (AAA)
T2SE                 PF00437.15   272 sp|P63284|CLPB_ECOLI -            857    0.0022   16.9   0.0   1   1     3e-05    0.0095   14.8   0.0   124   207   594   679   479   692 0.78 Type II/IV secretion system protein
MobB                 PF03205.9    140 sp|P63284|CLPB_ECOLI -            857    0.0028   17.3   0.0   2   2   0.00096       0.3   10.7   0.0     4    27   602   625   600   635 0.85 Molybdopterin guanine dinucleotide synthesis protein B
AAA_11               PF13086.1    236 sp|P63284|CLPB_ECOLI -            857    0.0068   16.0   0.1   1   1   0.00018     0.055   13.0   0.2    20   172   202   483   185   490 0.66 AAA domain
ATP_bind_1           PF03029.12   238 sp|P63284|CLPB_ECOLI -            857    0.0097   15.4   0.0   2   2    0.0011      0.35   10.3   0.0     2    27   604   629   603   642 0.84 Conserved hypothetical ATP binding protein
DNA_pol3_delta2      PF13177.1    162 sp|P63284|CLPB_ECOLI -            857      0.01   15.4   0.0   1   1    0.0023      0.73    9.4   0.0    20   127   599   695   581   698 0.74 DNA polymerase III, delta subunit
Ribosomal_S7         PF00177.16   148 sp|P63284|CLPB_ECOLI -            857     0.018   14.6   0.0   1   1   0.00012     0.039   13.5   0.0    43   146   188   286   184   288 0.93 Ribosomal protein S7p/S5e
EHN                  PF06441.7    112 sp|P63284|CLPB_ECOLI -            857      0.13   12.2   3.2   1   1   0.00038      0.12   12.3   0.9     4    81   404   485   402   496 0.84 Epoxide hydrolase N terminus
Torsin               PF06309.6    127 sp|P63284|CLPB_ECOLI -            857      0.14   12.0   0.0   1   1    0.0014      0.44   10.4   0.0    15    80   558   625   550   644 0.84 Torsin
AAA_23               PF13476.1    202 sp|P63284|CLPB_ECOLI -            857      0.15   12.3  18.7   2   2    0.0018      0.56   10.5   0.0    20   119   599   721   593   833 0.45 AAA domain
CLP_protease         PF00574.18   182 sp|P0A6G7|CLPP_ECOLI -            207     1e-86  289.2   0.0   1   1   8.2e-91   1.2e-86  289.0   0.0     2   181    26   205    25   206 0.99 Clp protease
ClpS                 PF02617.12    82 sp|P0A8Q6|CLPS_ECOLI -            106   9.4e-35  118.2   0.1   1   1   7.5e-39   1.1e-34  117.9   0.1     2    82    23   103    22   103 0.98 ATP-dependent Clp protease adaptor protein ClpS
AAA_2                PF07724.9    171 sp|P0A6H1|CLPX_ECOLI -            424   5.8e-49  166.2   0.0   1   1   2.1e-51   9.1e-49  165.6   0.0     3   170   112   310   110   311 0.97 AAA domain (Cdc48 subfamily)
zf-C4_ClpX           PF06689.8     41 sp|P0A6H1|CLPX_ECOLI -            424   2.5e-22   78.0   3.5   1   1   1.6e-24   6.8e-22   76.7   3.5     2    41    13    51    12    51 0.97 ClpX C4-type zinc finger
ClpB_D2-small        PF10431.4     81 sp|P0A6H1|CLPX_ECOLI -            424   4.8e-18   64.8   0.6   1   1   1.1e-20   4.8e-18   64.8   0.6     1    74   317   394   317   399 0.95 C-terminal, D2-small domain, of ClpB protein
AAA                  PF00004.24   132 sp|P0A6H1|CLPX_ECOLI -            424   4.7e-16   59.2   0.0   1   1   5.6e-18   2.4e-15   56.9   0.0     1    98   115   220   115   256 0.83 ATPase family associated with various cellular activities (AAA)
Mg_chelatase         PF01078.16   207 sp|P0A6H1|CLPX_ECOLI -            424   2.7e-07   29.9   0.2   1   2   2.7e-07   0.00012   21.3   0.4    20    55   110   146    75   171 0.81 Magnesium chelatase, subunit ChlI
AAA_5                PF07728.9    139 sp|P0A6H1|CLPX_ECOLI -            424   8.6e-07   28.7   0.0   1   1   1.6e-08     7e-06   25.8   0.1     1    79   114   191   114   195 0.74 AAA domain (dynein-related subfamily)
RuvB_N               PF05496.7    234 sp|P0A6H1|CLPX_ECOLI -            424   2.8e-06   26.5   0.0   1   1   1.5e-08   6.3e-06   25.4   0.0    16   116    68   192    53   196 0.72 Holliday junction DNA helicase ruvB N-terminus
AAA_22               PF13401.1    131 sp|P0A6H1|CLPX_ECOLI -            424   8.4e-06   25.9   0.7   1   1   1.5e-07   6.4e-05   23.0   0.2     4    98   112   188   108   215 0.64 AAA domain
AAA_17               PF13207.1    121 sp|P0A6H1|CLPX_ECOLI -            424     2e-05   25.3   0.2   1   1   4.7e-07    0.0002   22.1   0.0     2    46   115   161   114   240 0.67 AAA domain
MCM                  PF00493.18   331 sp|P0A6H1|CLPX_ECOLI -            424   0.00014   20.7   0.0   1   1   5.6e-07   0.00024   20.0   0.0    17   137    69   193    50   199 0.78 MCM2/3/5 family
AAA_16               PF13191.1    185 sp|P0A6H1|CLPX_ECOLI -            424   0.00018   21.5   0.5   1   1   3.2e-06    0.0014   18.6   0.0    18    48    98   136    89   154 0.78 AAA ATPase domain
AAA_18               PF13238.1    129 sp|P0A6H1|CLPX_ECOLI -            424   0.00025   21.3   0.2   1   1   3.4e-06    0.0015   18.8   0.0     1    56   115   174   115   205 0.66 AAA domain
Sigma54_activ_2      PF14532.1    138 sp|P0A6H1|CLPX_ECOLI -            424   0.00064   19.7   0.0   1   1   4.4e-06    0.0019   18.2   0.0    21    84   112   192   108   199 0.79 Sigma-54 interaction domain
Sigma54_activat      PF00158.21   168 sp|P0A6H1|CLPX_ECOLI -            424   0.00064   19.2   0.0   1   2   0.00031      0.13   11.7   0.0    20    44   110   134    91   154 0.84 Sigma-54 interaction domain
AAA_14               PF13173.1    128 sp|P0A6H1|CLPX_ECOLI -            424    0.0011   18.8   0.0   1   1   6.5e-06    0.0028   17.5   0.0     4    74   114   190   111   219 0.67 AAA domain
IstB_IS21            PF01695.12   178 sp|P0A6H1|CLPX_ECOLI -            424    0.0019   17.6   0.1   1   1   8.1e-06    0.0034   16.8   0.1    47    68   112   133   108   136 0.92 IstB-like ATP binding protein
T2SE                 PF00437.15   272 sp|P0A6H1|CLPX_ECOLI -            424    0.0022   16.9   0.2   1   1   1.1e-05    0.0048   15.8   0.2   128   151   112   135    63   146 0.83 Type II/IV secretion system protein
AAA_33               PF13671.1    143 sp|P0A6H1|CLPX_ECOLI -            424    0.0024   17.7   0.0   1   1   1.3e-05    0.0056   16.5   0.0     2    35   115   150   115   215 0.73 AAA domain
TIP49                PF06068.8    398 sp|P0A6H1|CLPX_ECOLI -            424    0.0033   16.1   0.0   1   1   2.4e-05      0.01   14.5   0.0    23    88    75   148    65   170 0.72 TIP49 C-terminus
AAA_19               PF13245.1     76 sp|P0A6H1|CLPX_ECOLI -            424    0.0058   16.3   0.0   1   1   3.7e-05     0.016   14.9   0.0    10    42   113   137   107   170 0.76 Part of AAA domain
NACHT                PF05729.7    166 sp|P0A6H1|CLPX_ECOLI -            424    0.0064   16.1   0.0   1   2   0.00027      0.11   12.0   0.0     3    24   115   136   113   148 0.89 NACHT domain
ABC_tran             PF00005.22   137 sp|P0A6H1|CLPX_ECOLI -            424    0.0065   16.7   0.0   1   1   4.8e-05      0.02   15.1   0.0    13    37   114   138   103   222 0.71 ABC transporter
AAA_25               PF13481.1    194 sp|P0A6H1|CLPX_ECOLI -            424     0.026   13.9   0.0   1   1   0.00014     0.058   12.7   0.0    34   130   113   202   106   214 0.73 AAA domain
AAA_29               PF13555.1     62 sp|P0A6H1|CLPX_ECOLI -            424     0.027   14.0   0.2   1   1   0.00014     0.061   12.8   0.2    23    47   112   136   101   146 0.80 P-loop containing region of AAA domain
AAA_28               PF13521.1    163 sp|P0A6H1|CLPX_ECOLI -            424     0.028   14.4   0.0   1   1   0.00014      0.06   13.2   0.0     2    32   115   146   114   178 0.78 AAA domain
DEAD                 PF00270.24   169 sp|P0A6H1|CLPX_ECOLI -            424     0.032   13.7   0.9   1   1   0.00028      0.12   11.8   0.9    12    33   110   131   104   401 0.74 DEAD/DEAH box helicase
ResIII               PF04851.10   184 sp|P0A6H1|CLPX_ECOLI -            424     0.033   14.0   0.0   1   1   0.00018     0.075   12.8   0.0    24    51   111   137    77   212 0.80 Type III restriction enzyme, res subunit
PhoH                 PF02562.11   205 sp|P0A6H1|CLPX_ECOLI -            424     0.066   12.4   0.0   1   1   0.00037      0.16   11.2   0.0    20    40   113   133   103   138 0.86 PhoH-like protein
AAA_PrkA             PF08298.6    358 sp|P0A6H1|CLPX_ECOLI -            424     0.098   11.3   0.0   1   1   0.00036      0.15   10.6   0.0    81   114   105   138    97   174 0.86 PrkA AAA domain
SapC                 PF07277.6    221 sp|P0A6H1|CLPX_ECOLI -            424       0.1   11.8   0.0   1   1   0.00061      0.26   10.5   0.0    77   163   299   384   288   403 0.91 SapC
RNA_helicase         PF00910.17   107 sp|P0A6H1|CLPX_ECOLI -            424      0.11   12.7   0.0   1   1    0.0007      0.29   11.3   0.0     1    25   115   139   115   203 0.70 RNA helicase
AAA_24               PF13479.1    213 sp|P0A6H1|CLPX_ECOLI -            424      0.13   11.8   0.1   1   1   0.00054      0.23   11.0   0.1     5    79   114   188   111   193 0.57 AAA domain
AAA_23               PF13476.1    202 sp|P0A6H1|CLPX_ECOLI -            424      0.33   11.2   2.1   1   1    0.0013      0.57   10.4   2.1    15    40   108   133    94   362 0.84 AAA domain
PLDc_2               PF13091.1    126 sp|P0A6H8|CLSA_ECOLI -            486   1.1e-32  112.4   0.0   1   2   5.4e-15   2.7e-11   43.3   0.0     1    94   134   242   134   256 0.90 PLD-like domain
PLDc_2               PF13091.1    126 sp|P0A6H8|CLSA_ECOLI -            486   1.1e-32  112.4   0.0   2   2     3e-22   1.5e-18   66.7   0.0     7   113   332   445   326   456 0.88 PLD-like domain
PLDc                 PF00614.17    28 sp|P0A6H8|CLSA_ECOLI -            486   2.3e-15   55.7   0.0   1   2   2.4e-10   1.2e-06   28.1   0.0     2    28   220   246   219   246 0.93 Phospholipase D Active site motif
PLDc                 PF00614.17    28 sp|P0A6H8|CLSA_ECOLI -            486   2.3e-15   55.7   0.0   2   2   1.5e-09   7.6e-06   25.5   0.0     2    28   400   426   399   426 0.95 Phospholipase D Active site motif
PLDc_N               PF13396.1     46 sp|P0A6H8|CLSA_ECOLI -            486     1e-05   25.0   6.4   1   1   4.9e-09   2.4e-05   23.8   6.4     2    44    17    59    16    60 0.89 Phospholipase_D-nuclease N-terminal
PLDc_2               PF13091.1    126 sp|P0AA84|CLSB_ECOLI -            413   5.7e-35  119.8   0.0   1   2   5.9e-15   2.9e-11   43.1   0.0     3   112    26   154    24   165 0.78 PLD-like domain
PLDc_2               PF13091.1    126 sp|P0AA84|CLSB_ECOLI -            413   5.7e-35  119.8   0.0   2   2   1.1e-24   5.6e-21   74.5   0.0     2   120   213   334   212   339 0.87 PLD-like domain
PLDc                 PF00614.17    28 sp|P0AA84|CLSB_ECOLI -            413   2.3e-11   43.0   0.2   1   2   1.1e-11   5.4e-08   32.3   0.0     3    24   110   131   108   135 0.91 Phospholipase D Active site motif
Regulator_TrmB       PF11495.3    234 sp|P0AA84|CLSB_ECOLI -            413   0.00024   20.1   0.0   2   2   2.9e-06     0.014   14.3   0.0     8    65   205   262   200   268 0.85 Archaeal transcriptional regulator TrmB
PLDc_2               PF13091.1    126 sp|P75919|CLSC_ECOLI -            473   4.8e-35  120.0   0.0   1   2   2.1e-13   7.7e-10   38.5   0.0     6   126    39   184    35   184 0.68 PLD-like domain
PLDc_2               PF13091.1    126 sp|P75919|CLSC_ECOLI -            473   4.8e-35  120.0   0.0   2   2   4.7e-26   1.7e-22   79.4   0.0     5   123   275   417   271   420 0.92 PLD-like domain
PLDc                 PF00614.17    28 sp|P75919|CLSC_ECOLI -            473   2.9e-06   26.8   0.4   2   2   2.3e-07   0.00083   19.0   0.0     4    28   367   391   364   391 0.93 Phospholipase D Active site motif
DUF1669              PF07894.7    284 sp|P75919|CLSC_ECOLI -            473    0.0028   16.9   0.0   1   2   0.00025      0.91    8.6   0.0   155   243    54   144    48   147 0.72 Protein of unknown function (DUF1669)
peroxidase           PF00141.18   230 sp|P75919|CLSC_ECOLI -            473      0.12   11.7   0.0   1   1   4.9e-05      0.18   11.2   0.0   122   154   121   153    92   232 0.83 Peroxidase
Methyltransf_18      PF12847.2    112 sp|P76290|CMOA_ECOLI -            247   7.7e-15   55.4   0.0   1   1   1.4e-17   1.2e-14   54.7   0.0     2   110    57   163    56   165 0.92 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|P76290|CMOA_ECOLI -            247   7.6e-12   45.5   0.0   1   1   1.7e-14   1.5e-11   44.6   0.0     2    95    62   162    61   162 0.95 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P76290|CMOA_ECOLI -            247   1.6e-10   40.7   0.0   1   1   2.9e-13   2.5e-10   40.1   0.0     3   110    56   164    54   198 0.86 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P76290|CMOA_ECOLI -            247   1.2e-09   38.4   0.0   1   1   2.9e-12   2.6e-09   37.3   0.0     1   101    60   158    60   158 0.89 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|P76290|CMOA_ECOLI -            247   4.1e-09   36.8   0.0   1   1   7.5e-12   6.5e-09   36.1   0.0     2    99    62   160    61   160 0.91 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|P76290|CMOA_ECOLI -            247   6.8e-07   29.1   0.0   1   1     1e-09   8.8e-07   28.7   0.0    18   126    51   177     4   227 0.75 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P76290|CMOA_ECOLI -            247   1.1e-05   25.4   0.0   1   1     2e-08   1.8e-05   24.7   0.0     2   113    58   162    57   165 0.86 Methyltransferase domain
MTS                  PF05175.9    170 sp|P76290|CMOA_ECOLI -            247   1.8e-05   24.1   0.0   1   1     3e-08   2.6e-05   23.6   0.0    23   166    49   190    44   194 0.78 Methyltransferase small domain
Ubie_methyltran      PF01209.13   233 sp|P76290|CMOA_ECOLI -            247   2.7e-05   23.4   0.0   1   1     5e-08   4.4e-05   22.7   0.0    45   154    54   165    47   240 0.83 ubiE/COQ5 methyltransferase family
CheR                 PF01739.13   196 sp|P76290|CMOA_ECOLI -            247   6.1e-05   22.3   0.0   1   2   0.00032      0.28   10.4   0.0    34    83    59   101    41   109 0.76 CheR methyltransferase, SAM binding domain
CheR                 PF01739.13   196 sp|P76290|CMOA_ECOLI -            247   6.1e-05   22.3   0.0   2   2   0.00046       0.4    9.9   0.0   136   174   125   163   109   179 0.85 CheR methyltransferase, SAM binding domain
Rsm22                PF09243.5    275 sp|P76290|CMOA_ECOLI -            247    0.0002   20.4   0.0   1   1     4e-07   0.00035   19.7   0.0    16   134    39   156    26   167 0.72 Mitochondrial small ribosomal subunit Rsm22
PCMT                 PF01135.14   210 sp|P76290|CMOA_ECOLI -            247   0.00096   18.7   0.0   1   1   1.5e-06    0.0013   18.3   0.0    60   134    44   119    21   163 0.78 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
PrmA                 PF06325.8    295 sp|P76290|CMOA_ECOLI -            247    0.0021   17.2   0.0   1   1   3.3e-06    0.0029   16.7   0.0   156   258    51   163    44   187 0.84 Ribosomal protein L11 methyltransferase (PrmA)
CMAS                 PF02353.15   273 sp|P76290|CMOA_ECOLI -            247    0.0037   16.3   0.0   1   1   5.8e-06    0.0051   15.9   0.0    60   166    54   164    45   189 0.85 Mycolic acid cyclopropane synthetase
FmrO                 PF07091.6    251 sp|P76290|CMOA_ECOLI -            247     0.043   12.8   0.0   1   1   7.9e-05     0.069   12.1   0.0   104   191    55   145    48   154 0.76 Ribosomal RNA methyltransferase (FmrO)
UPF0020              PF01170.13   180 sp|P76290|CMOA_ECOLI -            247     0.045   13.3   0.0   1   1   8.5e-05     0.074   12.6   0.0    54   111    77   130    40   184 0.81 Putative RNA methylase family UPF0020
Met_10               PF02475.11   200 sp|P76290|CMOA_ECOLI -            247     0.098   12.2   0.0   1   1   0.00018      0.15   11.5   0.0    99   177    54   133    48   161 0.76 Met-10+ like-protein
Methyltransf_9       PF08003.6    315 sp|P76291|CMOB_ECOLI -            323  2.1e-172  572.0   0.0   1   1  1.8e-175  2.4e-172  571.8   0.0     1   315     7   322     7   322 1.00 Protein of unknown function (DUF1698)
Methyltransf_23      PF13489.1    161 sp|P76291|CMOB_ECOLI -            323   4.7e-11   42.6   0.0   1   1   6.4e-14   8.6e-11   41.8   0.0    12   158   114   269   103   272 0.71 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P76291|CMOB_ECOLI -            323   8.2e-08   32.8   0.0   1   1   1.3e-10   1.7e-07   31.7   0.0     2   111   123   226   122   227 0.86 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P76291|CMOB_ECOLI -            323   1.3e-07   31.3   0.0   1   1   1.8e-10   2.4e-07   30.4   0.0     5   112   124   228   121   284 0.90 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|P76291|CMOB_ECOLI -            323   2.9e-05   24.4   0.0   1   1     4e-08   5.4e-05   23.6   0.0     1    94   127   223   127   224 0.81 Methyltransferase domain
CMAS                 PF02353.15   273 sp|P76291|CMOB_ECOLI -            323   6.4e-05   22.1   0.0   1   1   8.4e-08   0.00011   21.3   0.0    50   173   110   233   105   292 0.79 Mycolic acid cyclopropane synthetase
Methyltransf_12      PF08242.7     99 sp|P76291|CMOB_ECOLI -            323   0.00016   22.0   0.0   1   1   2.6e-07   0.00035   21.0   0.0     1    98   127   221   127   222 0.76 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P76291|CMOB_ECOLI -            323   0.00019   21.7   0.0   1   1   2.8e-07   0.00038   20.7   0.0     1    83   126   205   126   216 0.77 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P76291|CMOB_ECOLI -            323     0.044   13.8   0.1   1   1   5.2e-05      0.07   13.1   0.1     1    34   123   156   123   300 0.76 Methyltransferase domain
PCMT                 PF01135.14   210 sp|P76291|CMOB_ECOLI -            323     0.069   12.6   0.0   1   1   8.3e-05      0.11   11.9   0.0    73   107   122   154   112   176 0.77 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
DUF4568              PF15132.1    209 sp|P76291|CMOB_ECOLI -            323     0.087   12.0   0.0   1   1   0.00011      0.14   11.2   0.0   125   196   117   190   101   199 0.74 Domain of unknown function (DUF4568)
HHA                  PF05321.6     57 sp|P64467|CNU_ECOLI  -             71   4.2e-25   87.6   0.0   1   1   6.3e-29   4.7e-25   87.4   0.0     1    57     8    68     8    68 0.97 Haemolysin expression modulating protein
DUF1489              PF07370.6    137 sp|P64467|CNU_ECOLI  -             71      0.13   11.8   0.0   1   1     2e-05      0.15   11.5   0.0    10    51    15    57     9    64 0.80 Protein of unknown function (DUF1489)
PRK                  PF00485.13   194 sp|P0A6I3|COAA_ECOLI -            316   2.9e-13   49.8   0.0   1   1   1.5e-16   5.6e-13   48.8   0.0     1   148    90   244    90   253 0.87 Phosphoribulokinase / Uridine kinase family
AAA_17               PF13207.1    121 sp|P0A6I3|COAA_ECOLI -            316   0.00065   20.5   0.0   1   1   4.1e-07    0.0015   19.3   0.0     1   110    90   243    90   269 0.66 AAA domain
AAA_18               PF13238.1    129 sp|P0A6I3|COAA_ECOLI -            316     0.012   15.9   0.0   1   1   1.1e-05     0.043   14.1   0.0     1    23    91   129    91   244 0.73 AAA domain
AAA_22               PF13401.1    131 sp|P0A6I3|COAA_ECOLI -            316      0.14   12.2   0.0   1   1   7.6e-05      0.28   11.3   0.0     5    40    89   134    85   198 0.85 AAA domain
DFP                  PF04127.10   185 sp|P0ABQ0|COABC_ECOLI -            406   1.1e-72  243.5   0.2   2   2   4.4e-76   1.1e-72  243.5   0.2     2   184   187   371   186   372 0.97 DNA / pantothenate metabolism flavoprotein
Flavoprotein         PF02441.14   129 sp|P0ABQ0|COABC_ECOLI -            406   2.5e-31  108.0   0.3   1   1   2.2e-34   5.4e-31  106.9   0.3     1   128     6   133     6   134 0.90 Flavoprotein
PALP                 PF00291.20   306 sp|P0ABQ0|COABC_ECOLI -            406    0.0009   18.5   1.4   2   2   1.6e-05      0.04   13.1   0.3    60   149   209   314   193   318 0.61 Pyridoxal-phosphate dependent enzyme
NAD_binding_10       PF13460.1    183 sp|P0ABQ0|COABC_ECOLI -            406     0.016   15.2   1.0   2   2   6.2e-05      0.15   12.0   0.3     7    59   213   266   212   355 0.54 NADH(P)-binding
Glyco_trans_4_4      PF13579.1    160 sp|P0ABQ0|COABC_ECOLI -            406     0.019   15.1   4.1   1   2   8.6e-05      0.21   11.6   2.0     7   106    21   113    14   150 0.69 Glycosyl transferase 4-like domain
Glyco_transf_28      PF03033.15   139 sp|P0ABQ0|COABC_ECOLI -            406     0.059   13.1   1.1   1   2   8.3e-05      0.21   11.3   0.0    18    54    24    61    23   135 0.79 Glycosyltransferase family 28 N-terminal domain
CTP_transf_2         PF01467.21   157 sp|P0A6I6|COAD_ECOLI -            159     7e-25   87.9   0.1   1   1   1.7e-28   8.5e-25   87.6   0.1     1   156     6   134     6   135 0.98 Cytidylyltransferase
Citrate_ly_lig       PF08218.6    182 sp|P0A6I6|COAD_ECOLI -            159   1.6e-06   27.7   0.1   1   1   5.4e-10   2.7e-06   26.9   0.0     9   106    12   113    10   118 0.83 Citrate lyase ligase C-terminal domain
DUF3388              PF11868.3    192 sp|P0A6I6|COAD_ECOLI -            159     0.032   13.3   0.0   2   2   2.8e-05      0.14   11.3   0.0    78    97   120   139   112   152 0.85 Protein of unknown function (DUF3388)
CoaE                 PF01121.15   180 sp|P0A6I9|COAE_ECOLI -            206   9.5e-78  259.7   0.4   1   1   1.7e-80   1.1e-77  259.4   0.4     1   176     3   177     3   181 0.99 Dephospho-CoA kinase
AAA_17               PF13207.1    121 sp|P0A6I9|COAE_ECOLI -            206   2.4e-08   34.8   0.4   1   1   8.5e-10   5.7e-07   30.3   0.4     1    66     4    93     4   189 0.60 AAA domain
AAA_33               PF13671.1    143 sp|P0A6I9|COAE_ECOLI -            206   1.5e-06   28.1   0.7   1   1   6.6e-08   4.5e-05   23.3   0.7     2   130     5   156     4   169 0.56 AAA domain
AAA_28               PF13521.1    163 sp|P0A6I9|COAE_ECOLI -            206   1.6e-05   24.9   0.7   1   1   1.5e-07   9.9e-05   22.3   0.7     2    52     5    58     4   178 0.78 AAA domain
AAA_18               PF13238.1    129 sp|P0A6I9|COAE_ECOLI -            206   2.3e-05   24.7   0.4   1   1   3.4e-07   0.00023   21.4   0.4     1   115     5   147     5   159 0.57 AAA domain
SKI                  PF01202.17   158 sp|P0A6I9|COAE_ECOLI -            206   3.7e-05   23.6   1.7   1   1   6.6e-06    0.0045   16.8   1.7     2   141    12   176    11   195 0.71 Shikimate kinase
AAA_29               PF13555.1     62 sp|P0A6I9|COAE_ECOLI -            206    0.0023   17.4   0.1   1   1     6e-06    0.0041   16.6   0.1    26    44     5    23     1    25 0.87 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|P0A6I9|COAE_ECOLI -            206    0.0047   16.9   2.0   1   1   2.4e-05     0.016   15.1   2.0    27   120     5   133     3   204 0.57 AAA ATPase domain
ACT                  PF01842.20    66 sp|P0A6I9|COAE_ECOLI -            206    0.0052   16.2   1.8   1   2   6.8e-05     0.046   13.2   0.4    15    33    16    34    16    41 0.89 ACT domain
Cytidylate_kin2      PF13189.1    179 sp|P0A6I9|COAE_ECOLI -            206    0.0081   16.0   1.7   1   1   0.00018      0.12   12.2   1.7     1    43     4    45     4   168 0.71 Cytidylate kinase-like family
AAA_19               PF13245.1     76 sp|P0A6I9|COAE_ECOLI -            206    0.0086   15.8   4.3   1   1   2.4e-05     0.016   14.9   1.5    12    35     4    26     2    88 0.80 Part of AAA domain
AAA_22               PF13401.1    131 sp|P0A6I9|COAE_ECOLI -            206     0.012   15.7   0.5   1   1    0.0001     0.068   13.3   0.5     4    31     2    29     1   174 0.76 AAA domain
Thymidylate_kin      PF02223.12   186 sp|P0A6I9|COAE_ECOLI -            206     0.015   14.6   0.2   2   2   0.00079      0.53    9.6   0.0   117   164   122   169   101   177 0.84 Thymidylate kinase
CobU                 PF02283.11   167 sp|P0A6I9|COAE_ECOLI -            206     0.026   13.9   0.5   1   2    0.0014      0.94    8.8   0.0     3    19     7    23     5    31 0.86 Cobinamide kinase / cobinamide phosphate guanyltransferase
ABC_tran             PF00005.22   137 sp|P0A6I9|COAE_ECOLI -            206     0.051   13.8   1.2   1   1   0.00014     0.093   13.0   1.2    13    37     4    28     2   189 0.74 ABC transporter
Dynamin_N            PF00350.18   168 sp|P0A6I9|COAE_ECOLI -            206     0.069   12.9   0.1   1   1   0.00027      0.18   11.5   0.0     1    36     5    40     5    52 0.89 Dynamin family
Sigma54_activ_2      PF14532.1    138 sp|P0A6I9|COAE_ECOLI -            206     0.088   12.8   0.0   1   1   0.00044       0.3   11.1   0.0    24    59     5    40     2    70 0.84 Sigma-54 interaction domain
APS_kinase           PF01583.15   157 sp|P0A6I9|COAE_ECOLI -            206      0.11   12.2   0.1   1   1   0.00058      0.39   10.3   0.0     4    23     4    23     1    37 0.88 Adenylylsulphate kinase
KaiC                 PF06745.8    227 sp|P0A6I9|COAE_ECOLI -            206      0.11   11.6   0.1   1   2   0.00075      0.51    9.4   0.0    20    49     3    32     1    67 0.79 KaiC
His_Phos_1           PF00300.17   158 sp|P52086|COBC_ECOLI -            203   2.5e-37  128.4   0.1   1   1     4e-41   2.9e-37  128.1   0.1     1   156     2   154     2   156 0.96 Histidine phosphatase superfamily (branch 1)
PPTA                 PF01239.17    31 sp|P52086|COBC_ECOLI -            203      0.23   10.8   0.1   2   2   3.1e-05      0.23   10.8   0.1     8    21    94   107    93   108 0.89 Protein prenyltransferase alpha subunit repeat
CobS                 PF02654.10   235 sp|P36561|COBS_ECOLI -            247   4.7e-84  281.6  14.5   1   1   3.6e-88   5.3e-84  281.4  14.5     1   235     5   246     5   246 0.99 Cobalamin-5-phosphate synthase
DBI_PRT              PF02277.12   327 sp|P36562|COBT_ECOLI -            359  8.7e-119  396.4  10.4   1   1  6.7e-123    1e-118  396.2  10.4     2   327     8   347     7   347 0.99 Phosphoribosyltransferase
CobU                 PF02283.11   167 sp|P0AE76|COBU_ECOLI -            181   1.3e-62  210.0   0.2   1   1   4.1e-66   1.5e-62  209.8   0.2     1   167     3   180     3   180 0.97 Cobinamide kinase / cobinamide phosphate guanyltransferase
AAA_28               PF13521.1    163 sp|P0AE76|COBU_ECOLI -            181     0.036   14.0   0.1   1   1   2.3e-05     0.086   12.7   0.1     2    62     3    61     2   170 0.74 AAA domain
AAA_18               PF13238.1    129 sp|P0AE76|COBU_ECOLI -            181     0.041   14.1   0.0   1   1   2.7e-05       0.1   12.9   0.0     1    79     3    81     3   176 0.77 AAA domain
PNK3P                PF08645.6    159 sp|P0AE76|COBU_ECOLI -            181      0.14   11.6   0.0   1   1     6e-05      0.22   10.9   0.0    23    86   101   171    84   175 0.66 Polynucleotide kinase 3 phosphatase
Transp_cyt_pur       PF02133.10   440 sp|P0AA82|CODB_ECOLI -            419   5.4e-83  278.9  48.4   1   1   4.2e-87   6.2e-83  278.7  48.4     1   439    11   397    11   398 0.98 Permease for cytosine/purines, uracil, thiamine, allantoin
Amidohydro_3         PF07969.6    404 sp|P25524|CODA_ECOLI -            427   6.5e-56  190.2   1.5   1   1   8.4e-59   2.5e-55  188.3   1.5     1   404    53   379    53   379 0.98 Amidohydrolase family
Amidohydro_4         PF13147.1    304 sp|P25524|CODA_ECOLI -            427   7.1e-16   59.0   1.1   1   1   3.1e-19   9.1e-16   58.6   1.1     1   303    48   377    48   378 0.94 Amidohydrolase
Amidohydro_5         PF13594.1     68 sp|P25524|CODA_ECOLI -            427   1.1e-05   25.1   1.9   1   2   7.4e-09   2.2e-05   24.1   0.1     2    45    24    80    23   131 0.75 Amidohydrolase
Amidohydro_1         PF01979.15   333 sp|P25524|CODA_ECOLI -            427   0.00049   19.8   0.3   1   1   1.4e-06    0.0041   16.8   0.3     2   332    54   380    53   380 0.67 Amidohydrolase family
RP-C                 PF03428.8    177 sp|P25524|CODA_ECOLI -            427    0.0041   16.5   0.0   1   1   2.5e-06    0.0076   15.7   0.0    22    72   107   157    90   168 0.81 Replication protein C N-terminal domain
Hydrolase_3          PF08282.7    254 sp|P46891|COF_ECOLI  -            272   6.7e-51  173.2   0.0   1   1   3.1e-54   7.6e-51  173.1   0.0     2   254     6   258     5   258 0.98 haloacid dehalogenase-like hydrolase
S6PP                 PF05116.8    247 sp|P46891|COF_ECOLI  -            272   4.7e-18   65.3   0.0   1   2   5.8e-08   0.00014   21.2   0.1     4    79     4    79     1   107 0.71 Sucrose-6F-phosphate phosphohydrolase
S6PP                 PF05116.8    247 sp|P46891|COF_ECOLI  -            272   4.7e-18   65.3   0.0   2   2   2.1e-14   5.2e-11   42.3   0.0   119   213   145   236   139   253 0.87 Sucrose-6F-phosphate phosphohydrolase
Hydrolase            PF00702.21   215 sp|P46891|COF_ECOLI  -            272   4.4e-05   23.9   0.0   1   1   3.5e-08   8.8e-05   23.0   0.0     3   214     4   223     2   224 0.68 haloacid dehalogenase-like hydrolase
Hydrolase_6          PF13344.1    101 sp|P46891|COF_ECOLI  -            272      0.12   12.2   0.0   1   1   0.00013      0.32   10.8   0.0     2    43     6    48     5    93 0.77 Haloacid dehalogenase-like hydrolase
Trehalose_PPase      PF02358.11   235 sp|P46891|COF_ECOLI  -            272      0.13   11.1   0.0   2   2   0.00015      0.38    9.6   0.0   155   200   178   220   171   241 0.87 Trehalose-phosphatase
E1-E2_ATPase         PF00122.15   230 sp|Q59385|COPA_ECOLI -            834   3.2e-55  186.6   0.2   2   2     2e-58   3.2e-55  186.6   0.2     1   229   291   512   291   513 0.99 E1-E2 ATPase
Hydrolase            PF00702.21   215 sp|Q59385|COPA_ECOLI -            834   3.3e-55  187.8   6.5   1   1     2e-58   3.3e-55  187.8   6.5     2   215   518   732   517   732 0.94 haloacid dehalogenase-like hydrolase
HMA                  PF00403.21    62 sp|Q59385|COPA_ECOLI -            834   1.1e-29  102.3   0.1   1   2   1.4e-14   2.3e-11   43.6   0.1     3    62     8    62     6    62 0.96 Heavy-metal-associated domain
HMA                  PF00403.21    62 sp|Q59385|COPA_ECOLI -            834   1.1e-29  102.3   0.1   2   2   1.5e-18   2.4e-15   56.3   0.0     3    61   104   159   102   160 0.96 Heavy-metal-associated domain
HAD                  PF12710.2    192 sp|Q59385|COPA_ECOLI -            834   2.2e-20   73.6   0.0   2   2   7.9e-23   1.3e-19   71.1   0.0     1   191   520   728   520   729 0.63 haloacid dehalogenase-like hydrolase
Hydrolase_3          PF08282.7    254 sp|Q59385|COPA_ECOLI -            834   3.1e-09   36.7   1.1   2   2   1.6e-09   2.6e-06   27.2   0.8   194   254   704   764   699   764 0.93 haloacid dehalogenase-like hydrolase
HAD_2                PF13419.1    176 sp|Q59385|COPA_ECOLI -            834     0.045   13.9   0.0   1   1   7.9e-05      0.13   12.4   0.0    74   122   647   695   614   729 0.88 Haloacid dehalogenase-like hydrolase
DNA_photolyase       PF00875.13   165 sp|Q59385|COPA_ECOLI -            834      0.13   12.0   0.4   2   2   0.00038      0.62    9.7   0.0    52    95   653   695   616   711 0.83 DNA photolyase
CorA                 PF01544.13   292 sp|P0ABI4|CORA_ECOLI -            316   3.2e-56  190.5   0.4   1   1   2.6e-60   3.9e-56  190.2   0.4     4   292    26   312    24   312 0.95 CorA-like Mg2+ transporter protein
CorC_HlyC            PF03471.12    81 sp|P0AE78|CORC_ECOLI -            292   6.9e-24   83.4   0.4   2   2     3e-27   2.2e-23   81.8   0.0     2    79   206   281   205   283 0.94 Transporter associated domain
CBS                  PF00571.23    57 sp|P0AE78|CORC_ECOLI -            292     9e-21   73.3   2.0   1   2   3.8e-14   2.8e-10   39.7   0.1     1    53    69   124    69   128 0.96 CBS domain
CBS                  PF00571.23    57 sp|P0AE78|CORC_ECOLI -            292     9e-21   73.3   2.0   2   2   5.2e-12   3.9e-08   32.9   0.3     6    56   140   189   135   190 0.92 CBS domain
Metallophos          PF00149.23   200 sp|P0AEW4|CPDA_ECOLI -            275   6.2e-16   58.3   1.0   1   1   1.4e-19     1e-15   57.6   1.0     2   199    16   206    15   207 0.90 Calcineurin-like phosphoesterase
Metallophos_2        PF12850.2    156 sp|P0AEW4|CPDA_ECOLI -            275   3.2e-12   46.5   0.0   1   1   6.7e-16   4.9e-12   45.9   0.0     2   139    16   225    15   239 0.69 Calcineurin-like phosphoesterase superfamily domain
5_nucleotid_C        PF02872.13   156 sp|P08331|CPDB_ECOLI -            647   2.2e-27   95.9   0.1   1   1     8e-31   5.9e-27   94.5   0.1     1   149   355   550   355   555 0.82 5'-nucleotidase, C-terminal domain
Metallophos          PF00149.23   200 sp|P08331|CPDB_ECOLI -            647   3.7e-20   72.1   0.0   1   1   8.9e-24   6.6e-20   71.3   0.0     1   198    24   259    24   261 0.96 Calcineurin-like phosphoesterase
Sdh5                 PF03937.11    74 sp|P64559|CPTB_ECOLI -             88   7.5e-27   92.8   0.5   1   1   2.3e-30   8.5e-27   92.6   0.5     1    74     5    77     5    77 0.96 Flavinator of succinate dehydrogenase
DUF866               PF05907.8    161 sp|P64559|CPTB_ECOLI -             88    0.0095   15.4   0.0   1   1   3.1e-06     0.011   15.1   0.0    59   120     5    67     2    74 0.87 Eukaryotic protein of unknown function (DUF866)
YbjN                 PF10722.4    127 sp|P64559|CPTB_ECOLI -             88     0.014   15.4   0.0   1   1   4.2e-06     0.016   15.2   0.0    31    77    36    83    17    84 0.93 Putative bacterial sensory transduction regulator
RE_XamI              PF09572.5    251 sp|P64559|CPTB_ECOLI -             88     0.098   12.0   0.0   1   1   3.2e-05      0.12   11.8   0.0    61    99    33    71    26    80 0.86 XamI restriction endonuclease
CRCB                 PF02537.10   117 sp|P37002|CRCB_ECOLI -            127   3.1e-29  101.2  12.8   1   1   4.9e-33   3.6e-29  101.0  12.8     2   116     6   118     5   119 0.95 CrcB-like protein
DUF3815              PF12821.2    130 sp|P37002|CRCB_ECOLI -            127     0.024   14.5   1.3   1   2   3.2e-06     0.024   14.5   1.3    26    71     7    60     2    71 0.71 Protein of unknown function (DUF3815)
Dynamin_N            PF00350.18   168 sp|P0DM85|CRFC_ECOLI -            742   8.2e-19   68.0   0.0   1   1     3e-21   2.9e-18   66.2   0.0     1   148    72   278    72   300 0.78 Dynamin family
MMR_HSR1             PF01926.18   116 sp|P0DM85|CRFC_ECOLI -            742   4.6e-08   33.0   0.0   1   2   7.2e-06    0.0071   16.2   0.0     2    37    72   107    71   170 0.80 50S ribosome-binding GTPase
MMR_HSR1             PF01926.18   116 sp|P0DM85|CRFC_ECOLI -            742   4.6e-08   33.0   0.0   2   2   3.3e-05     0.032   14.1   0.0    46   116   230   298   187   298 0.72 50S ribosome-binding GTPase
Miro                 PF08477.8    119 sp|P0DM85|CRFC_ECOLI -            742   1.5e-05   25.4   0.0   2   2   9.5e-05     0.094   13.2   0.0    57   119   242   300   221   300 0.85 Miro-like protein
GTP_EFTU             PF00009.22   188 sp|P0DM85|CRFC_ECOLI -            742   0.00069   19.0   0.0   2   2   0.00021      0.21   10.9   0.0    70   170   230   336   210   432 0.76 Elongation factor Tu GTP binding domain
AAA_10               PF12846.2    304 sp|P0DM85|CRFC_ECOLI -            742    0.0087   15.5   0.2   1   2   0.00058      0.58    9.5   0.0     4    29    72    97    70   115 0.87 AAA-like domain
AIG1                 PF04548.11   212 sp|P0DM85|CRFC_ECOLI -            742     0.016   14.2   0.1   1   1     6e-05      0.06   12.4   0.0     4    29    73    98    70   116 0.84 AIG1 family
Gtr1_RagA            PF04670.7    232 sp|P0DM85|CRFC_ECOLI -            742     0.067   12.3   0.0   1   1    0.0003       0.3   10.2   0.0    49   132   231   308   213   337 0.80 Gtr1/RagA G protein conserved region
HTH_Tnp_IS630        PF01710.11   120 sp|P0DM85|CRFC_ECOLI -            742     0.072   12.7   0.0   1   1   0.00018      0.18   11.4   0.0    15    81   596   661   586   671 0.87 Transposase
Spore_IV_A           PF09547.5    492 sp|P0DM85|CRFC_ECOLI -            742      0.11   11.1   0.0   1   1   0.00038      0.38    9.3   0.0    16    46    68    98    55   104 0.85 Stage IV sporulation protein A (spore_IV_A)
AAA_29               PF13555.1     62 sp|P0DM85|CRFC_ECOLI -            742      0.12   11.9   0.0   1   1   0.00029      0.29   10.6   0.0    19    44    65    90    57   100 0.83 P-loop containing region of AAA domain
Ras                  PF00071.17   162 sp|P0DM85|CRFC_ECOLI -            742      0.13   11.5   0.2   1   1   0.00036      0.36   10.2   0.0    46   125   228   310   206   322 0.79 Ras family
Mating_N             PF12731.2     95 sp|P0DM85|CRFC_ECOLI -            742      0.36   10.7   7.6   1   2   0.00085      0.84    9.5   0.7     9    53   485   530   478   537 0.90 Mating-type protein beta 1
Crl                  PF07417.7    127 sp|P24251|CRL_ECOLI  -            133     1e-54  183.6   0.1   1   1   1.6e-58   1.2e-54  183.4   0.1     2   122     3   123     2   131 0.96 Transcriptional regulator Crl
Big_3_2              PF12245.3     60 sp|P24251|CRL_ECOLI  -            133      0.15   11.6   0.0   1   1   3.6e-05      0.26   10.8   0.0    24    44    68    88    64    90 0.86 Bacterial Ig-like domain (group 3)
Aminotran_5          PF00266.14   371 sp|Q46925|CSDA_ECOLI -            401  6.8e-140  466.0   0.0   1   1    1e-143  7.7e-140  465.8   0.0     1   371    21   388    21   388 1.00 Aminotransferase class-V
Cys_Met_Meta_PP      PF01053.15   386 sp|Q46925|CSDA_ECOLI -            401    0.0086   14.3   0.0   1   1   1.5e-06     0.011   14.0   0.0    91   182   106   201    38   224 0.75 Cys/Met metabolism PLP-dependent enzyme
SufE                 PF02657.10   125 sp|P0AGF2|CSDE_ECOLI -            147   3.8e-48  162.2   0.0   1   1   2.9e-52   4.3e-48  162.0   0.0     2   124    21   144    20   145 0.98 Fe-S metabolism associated domain
CRISPR_Cse1          PF09481.5    477 sp|Q46901|CSE1_ECOLI -            502     1e-84  285.0   0.0   1   1   7.7e-89   1.1e-84  284.8   0.0     1   476     2   463     2   464 0.95 CRISPR-associated protein Cse1 (CRISPR_cse1)
CRISPR_Cse2          PF09485.5    146 sp|P76632|CSE2_ECOLI -            160   3.9e-19   69.1   1.0   1   1   3.4e-23   5.1e-19   68.7   1.0     1   145    20   152    20   153 0.87 CRISPR-associated protein Cse2 (CRISPR_cse2)
Curlin_rpt           PF07012.7     34 sp|P28307|CSGA_ECOLI -            151   1.1e-28   98.6  29.3   3   7   3.6e-16   5.3e-12   45.2   0.8     1    34    40    74    40    74 0.99 Curlin associated repeat
Curlin_rpt           PF07012.7     34 sp|P28307|CSGA_ECOLI -            151   1.1e-28   98.6  29.3   5   7   7.7e-17   1.1e-12   47.3   0.5     2    34    86   119    85   119 0.98 Curlin associated repeat
Curlin_rpt           PF07012.7     34 sp|P28307|CSGA_ECOLI -            151   1.1e-28   98.6  29.3   6   7   1.2e-09   1.8e-05   24.3   5.1     8    34   115   141   114   141 0.95 Curlin associated repeat
Curlin_rpt           PF07012.7     34 sp|P28307|CSGA_ECOLI -            151   1.1e-28   98.6  29.3   7   7   6.3e-07    0.0093   15.6   2.3     3    21   132   150   130   151 0.91 Curlin associated repeat
Tafi-CsgC            PF10610.4    106 sp|P52107|CSGC_ECOLI -            110   5.1e-67  222.3   4.6   1   1   7.9e-71   5.9e-67  222.1   4.6     1   106     5   110     5   110 0.99 Thin aggregative fimbriae synthesis protein
CsgG                 PF03783.9    209 sp|P0AEA2|CSGG_ECOLI -            277     1e-66  223.9   0.0   1   1   2.5e-70   1.2e-66  223.7   0.0     2   208    41   255    40   256 0.98 Curli production assembly/transport component CsgG
N_NLPC_P60           PF12912.2    124 sp|P0AEA2|CSGG_ECOLI -            277      0.14   12.2   0.0   1   1   6.6e-05      0.33   11.0   0.0     2    39     4    43     3    55 0.84 NLPC_P60 stabilising domain, N term
LPAM_1               PF08139.7     25 sp|P0AEA2|CSGG_ECOLI -            277      0.27   11.4   1.4   1   1   0.00016      0.78   10.0   1.4    11    23     4    16     1    16 0.88 Prokaryotic membrane lipoprotein lipid attachment site
Curlin_rpt           PF07012.7     34 sp|P0ABK7|CSGB_ECOLI -            151   4.2e-21   74.3  24.7   1   4   1.8e-05      0.26   11.0   0.7    14    29    44    59    42    60 0.88 Curlin associated repeat
Curlin_rpt           PF07012.7     34 sp|P0ABK7|CSGB_ECOLI -            151   4.2e-21   74.3  24.7   2   4   9.8e-16   1.5e-11   43.8   1.2     1    34    53    86    53    86 0.99 Curlin associated repeat
Curlin_rpt           PF07012.7     34 sp|P0ABK7|CSGB_ECOLI -            151   4.2e-21   74.3  24.7   3   4   3.7e-09   5.5e-05   22.7   2.5    10    32    84   106    84   107 0.98 Curlin associated repeat
Curlin_rpt           PF07012.7     34 sp|P0ABK7|CSGB_ECOLI -            151   4.2e-21   74.3  24.7   4   4   7.1e-12   1.1e-07   31.4   6.1     1    34    97   130    97   130 0.98 Curlin associated repeat
CsiD                 PF08943.5    297 sp|P76621|CSID_ECOLI -            325  2.1e-149  496.3   0.0   1   1  3.2e-153  2.4e-149  496.1   0.0     1   297    20   315    20   315 1.00 CsiD
TauD                 PF02668.11   258 sp|P76621|CSID_ECOLI -            325   2.9e-11   43.5   0.1   1   1   5.4e-15     4e-11   43.0   0.1    33   256    88   309    61   311 0.80 Taurine catabolism dioxygenase TauD, TfdA family
CsrA                 PF02599.11    54 sp|P69913|CSRA_ECOLI -             61   5.9e-28   96.3   1.7   1   1   8.9e-32   6.6e-28   96.2   1.7     1    54     1    54     1    54 0.99 Global regulator protein family
S1                   PF00575.18    74 sp|P69913|CSRA_ECOLI -             61     0.028   14.5   0.4   1   1   5.6e-06     0.042   13.9   0.4     3    41    13    52    11    60 0.84 S1 RNA binding domain
CstA                 PF02554.9    376 sp|P15078|CSTA_ECOLI -            701  6.2e-156  518.7  28.7   1   2  1.7e-159  6.2e-156  518.7  28.7     1   359    32   420    32   436 0.95 Carbon starvation protein CstA
DUF4161              PF13722.1    127 sp|P15078|CSTA_ECOLI -            701     2e-46  157.4   7.5   3   3   5.4e-50     2e-46  157.4   7.5     3   127   467   596   464   596 0.98 C-terminal domain on CstA (DUF4161)
DUF2417              PF10329.4    232 sp|P15078|CSTA_ECOLI -            701         8    5.7   8.0   3   3   0.00012      0.46    9.8   0.0   114   212   563   669   536   693 0.81 Region of unknown function (DUF2417)
Cu-oxidase_3         PF07732.10   118 sp|P36649|CUEO_ECOLI -            516   8.5e-32  109.3   0.1   1   1   5.8e-35   2.1e-31  108.0   0.1     4   117    54   166    51   167 0.94 Multicopper oxidase
Cu-oxidase_2         PF07731.9    138 sp|P36649|CUEO_ECOLI -            516   3.1e-20   72.0  12.1   3   3   8.2e-23     3e-19   68.8   9.8    16   134   396   516   373   516 0.75 Multicopper oxidase
Cu-oxidase           PF00394.17   159 sp|P36649|CUEO_ECOLI -            516   3.5e-09   36.7   0.0   1   2   4.7e-09   1.7e-05   24.7   0.0    66   130   227   292   182   312 0.85 Multicopper oxidase
TAT_signal           PF10518.4     26 sp|P36649|CUEO_ECOLI -            516    0.0042   16.9   0.1   1   1   4.4e-06     0.016   15.1   0.1     2    23     1    22     1    25 0.90 TAT (twin-arginine translocation) pathway signal sequence
ADH_zinc_N           PF00107.21   130 sp|P76113|CURA_ECOLI -            345   1.1e-18   67.0   0.0   1   1   2.5e-22   1.8e-18   66.3   0.0     1   119   161   293   161   302 0.92 Zinc-binding dehydrogenase
ADH_zinc_N_2         PF13602.1    127 sp|P76113|CURA_ECOLI -            345   5.9e-06   27.1   0.0   1   1   1.5e-09   1.1e-05   26.3   0.0     1   127   194   339   194   339 0.79 Zinc-binding dehydrogenase
ACR_tran             PF00873.14  1021 sp|P38054|CUSA_ECOLI -           1047  2.1e-238  793.5   2.0   1   1    7e-242  2.6e-238  793.2   2.0     2  1019     6  1037     2  1039 0.97 AcrB/AcrD/AcrF family
MMPL                 PF03176.10   333 sp|P38054|CUSA_ECOLI -           1047   0.00058   18.6  15.7   2   2   5.8e-07    0.0021   16.8   2.1   107   201   837   926   824   956 0.71 MMPL family
HlyD_2               PF12700.2    328 sp|P77239|CUSB_ECOLI -            407   1.5e-14   53.9   0.0   1   1   2.9e-17   8.6e-14   51.4   0.0   136   327   187   378    98   379 0.77 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P77239|CUSB_ECOLI -            407   1.8e-13   50.7   0.2   2   2     5e-14   1.5e-10   41.3   0.0     1   105   209   310   209   310 0.96 HlyD family secretion protein
DUF2717              PF10911.3     77 sp|P77239|CUSB_ECOLI -            407     0.056   12.9   0.0   1   1   8.1e-05      0.24   10.9   0.0    15    60   155   201   152   211 0.86 Protein of unknown function (DUF2717)
OEP                  PF02321.13   188 sp|P77211|CUSC_ECOLI -            457   1.1e-51  175.1  39.3   1   2   1.4e-26   1.1e-22   80.5  18.2     3   188    65   247    63   247 0.97 Outer membrane efflux protein
OEP                  PF02321.13   188 sp|P77211|CUSC_ECOLI -            457   1.1e-51  175.1  39.3   2   2   9.5e-33     7e-29  100.7  13.2     7   188   275   455   270   455 0.94 Outer membrane efflux protein
Plasmid_killer       PF05015.8     93 sp|P77211|CUSC_ECOLI -            457     0.087   12.9   0.0   1   2   5.1e-05      0.37   10.9   0.0     4    83    48   129    45   138 0.88 Plasmid maintenance system killer protein
CutA1                PF03091.10   102 sp|P69488|CUTA_ECOLI -            112   1.3e-37  127.5   0.1   1   1     2e-41   1.5e-37  127.3   0.1     2   101    12   111    11   112 0.98 CutA1 divalent ion tolerance protein
Lzipper-MIP1         PF14389.1     88 sp|P69488|CUTA_ECOLI -            112     0.034   14.2   0.2   1   1   7.8e-06     0.057   13.5   0.2    22    60    54    92    52    93 0.95 Leucine-zipper of ternary complex factor MIP1
CutC                 PF03932.9    202 sp|P67826|CUTC_ECOLI -            248   1.1e-85  286.0   0.1   1   1   8.8e-90   1.3e-85  285.7   0.1     2   201     3   200     2   201 0.99 CutC family
Adenylate_cycl       PF01295.13   605 sp|P00936|CYAA_ECOLI -            848  9.8e-275  912.5   0.0   1   1  1.6e-278  1.2e-274  912.3   0.0     1   601   228   826   228   830 0.98 Adenylate cyclase, class-I
Adenyl_cycl_N        PF12633.2    204 sp|P00936|CYAA_ECOLI -            848   2.6e-87  291.6   0.0   1   2   1.6e-86   1.2e-82  276.3   0.0     1   203     1   200     1   201 0.96 Adenylate cyclase NT domain
Adenyl_cycl_N        PF12633.2    204 sp|P00936|CYAA_ECOLI -            848   2.6e-87  291.6   0.0   2   2     7e-06     0.052   13.0   0.0    18    75   698   755   691   781 0.82 Adenylate cyclase NT domain
Frataxin_Cyay        PF01491.11   109 sp|P27838|CYAY_ECOLI -            106   3.9e-38  129.5   0.2   1   1   5.8e-42   4.3e-38  129.4   0.2     1   108     1   105     1   106 0.97 Frataxin-like domain
DUF3908              PF13048.1    127 sp|P27838|CYAY_ECOLI -            106     0.052   13.5   0.0   1   1   8.6e-06     0.064   13.2   0.0    88   124    28    62     5    66 0.86 Protein of unknown function (DUF3908)
Cytochrom_B_N        PF00033.14   188 sp|P0AAM1|CYBH_ECOLI -            235   6.3e-37  126.7  21.4   1   1   2.4e-40   7.1e-37  126.5  21.4     2   188    12   220    11   220 0.98 Cytochrome b(N-terminal)/b6/petB
Ni_hydr_CYTB         PF01292.15   182 sp|P0AAM1|CYBH_ECOLI -            235   6.8e-36  123.3  19.2   1   1   2.7e-39   7.9e-36  123.1  19.2     2   182    14   220    13   220 0.95 Prokaryotic cytochrome b561
CopD                 PF05425.8    105 sp|P0AAM1|CYBH_ECOLI -            235       6.9    6.9  14.0   1   2   5.2e-05      0.15   12.2   4.7     2    64    16    82    15   106 0.80 Copper resistance protein D
DUF4405              PF14358.1     64 sp|P0AAM1|CYBH_ECOLI -            235       7.1    6.8  23.5   1   2    0.0003      0.89    9.7   4.7     7    56    23    74    19    78 0.81 Domain of unknown function (DUF4405)
AA_permease          PF00324.16   478 sp|P0AAE0|CYCA_ECOLI -            470  3.8e-121  404.7  46.0   1   1  8.6e-125  4.2e-121  404.5  46.0     1   476    27   468    27   470 0.98 Amino acid permease
AA_permease_2        PF13520.1    426 sp|P0AAE0|CYCA_ECOLI -            470     6e-51  173.3  50.0   1   1   1.6e-54   7.8e-51  172.9  50.0     8   419    30   446    26   459 0.84 Amino acid permease
PrgI                 PF12666.2     93 sp|P0AAE0|CYCA_ECOLI -            470     0.053   13.6   0.3   1   3   1.1e-05     0.053   13.6   0.3    10    65    16    75     7    83 0.82 PrgI family protein
Bac_Ubq_Cox          PF01654.12   436 sp|P0ABJ9|CYDA_ECOLI -            522  1.3e-183  610.4  21.3   1   1  2.9e-187  1.4e-183  610.2  21.3     1   435     7   502     7   503 0.98 Bacterial Cytochrome Ubiquinol Oxidase
ERM                  PF00769.14   246 sp|P0ABJ9|CYDA_ECOLI -            522    0.0047   16.5   0.0   1   1   1.3e-06    0.0063   16.0   0.0   212   246   312   347   308   347 0.93 Ezrin/radixin/moesin family
Cyto_ox_2            PF02322.10   328 sp|P0ABK2|CYDB_ECOLI -            379  7.9e-121  403.2  36.0   1   1  6.2e-125  9.2e-121  403.0  36.0     2   327     7   362     6   363 0.99 Cytochrome oxidase subunit II
ABC_tran             PF00005.22   137 sp|P23886|CYDC_ECOLI -            573   8.6e-34  116.7   0.2   1   1   3.8e-36   1.9e-33  115.6   0.0     1   136   356   502   356   503 0.94 ABC transporter
ABC_membrane         PF00664.18   275 sp|P23886|CYDC_ECOLI -            573   2.8e-07   30.2  11.7   1   1   3.2e-09   1.6e-06   27.7  11.7    65   271    84   289    16   292 0.80 ABC transporter transmembrane region
AAA_21               PF13304.1    303 sp|P23886|CYDC_ECOLI -            573     9e-07   29.1   0.0   2   2   2.1e-07    0.0001   22.3   0.0   236   297   474   531   470   533 0.91 AAA domain
SMC_N                PF02463.14   220 sp|P23886|CYDC_ECOLI -            573   4.4e-06   26.1   0.1   2   2     9e-07   0.00044   19.5   0.0   132   209   455   543   405   551 0.79 RecF/RecN/SMC N terminal domain
AAA_22               PF13401.1    131 sp|P23886|CYDC_ECOLI -            573   1.3e-05   25.3   0.1   1   1   8.2e-08     4e-05   23.7   0.1     5   122   367   528   362   537 0.79 AAA domain
NACHT                PF05729.7    166 sp|P23886|CYDC_ECOLI -            573    0.0001   21.9   0.4   1   2   4.5e-06    0.0022   17.6   0.1     3    27   369   393   367   399 0.88 NACHT domain
AAA_16               PF13191.1    185 sp|P23886|CYDC_ECOLI -            573   0.00015   21.7   3.2   1   1   3.1e-07   0.00015   21.7   3.2    23   175   365   522   342   530 0.59 AAA ATPase domain
DUF87                PF01935.12   229 sp|P23886|CYDC_ECOLI -            573   0.00071   19.4   0.0   1   1   2.5e-06    0.0013   18.6   0.0    23    44   366   387   351   401 0.82 Domain of unknown function DUF87
MMR_HSR1             PF01926.18   116 sp|P23886|CYDC_ECOLI -            573     0.004   17.1   0.0   1   1   1.8e-05    0.0089   15.9   0.0     1    22   368   389   368   464 0.89 50S ribosome-binding GTPase
FtsK_SpoIIIE         PF01580.13   205 sp|P23886|CYDC_ECOLI -            573    0.0041   16.6   0.2   1   1   2.7e-05     0.013   14.9   0.0    31    58   359   386   341   390 0.81 FtsK/SpoIIIE family
AAA_25               PF13481.1    194 sp|P23886|CYDC_ECOLI -            573    0.0045   16.4   0.0   1   1     2e-05    0.0098   15.3   0.0    23    60   353   395   331   453 0.81 AAA domain
DUF258               PF03193.11   161 sp|P23886|CYDC_ECOLI -            573    0.0048   16.1   0.0   1   1     2e-05      0.01   15.0   0.0    21    66   351   397   334   402 0.79 Protein of unknown function, DUF258
T2SE                 PF00437.15   272 sp|P23886|CYDC_ECOLI -            573    0.0049   15.8   0.0   1   1   1.6e-05    0.0078   15.1   0.0    94   160   331   398   305   434 0.81 Type II/IV secretion system protein
Miro                 PF08477.8    119 sp|P23886|CYDC_ECOLI -            573    0.0058   17.1   0.0   1   1   2.4e-05     0.012   16.1   0.0     1    25   368   392   368   427 0.82 Miro-like protein
AAA_29               PF13555.1     62 sp|P23886|CYDC_ECOLI -            573     0.019   14.4   0.0   1   1   0.00013     0.063   12.8   0.0    19    41   363   384   355   401 0.81 P-loop containing region of AAA domain
AAA_30               PF13604.1    196 sp|P23886|CYDC_ECOLI -            573     0.025   14.1   0.0   1   1   0.00015     0.072   12.6   0.0    16    50   365   398   351   431 0.84 AAA domain
ATP-synt_ab          PF00006.20   215 sp|P23886|CYDC_ECOLI -            573     0.045   13.2   0.1   1   1   0.00034      0.17   11.3   0.0    14    38   365   389   358   404 0.88 ATP synthase alpha/beta family, nucleotide-binding domain
AAA_10               PF12846.2    304 sp|P23886|CYDC_ECOLI -            573     0.049   13.0   0.0   1   1   0.00022      0.11   11.9   0.0     3    25   368   390   366   403 0.84 AAA-like domain
AAA_5                PF07728.9    139 sp|P23886|CYDC_ECOLI -            573     0.051   13.3   0.1   1   1   0.00044      0.22   11.2   0.0     2    32   369   400   368   425 0.76 AAA domain (dynein-related subfamily)
Viral_helicase1      PF01443.13   234 sp|P23886|CYDC_ECOLI -            573     0.053   13.0   0.0   1   1    0.0002     0.098   12.1   0.0     2    21   370   389   369   436 0.77 Viral (Superfamily 1) RNA helicase
Mg_chelatase         PF01078.16   207 sp|P23886|CYDC_ECOLI -            573     0.054   12.6   0.0   1   1   0.00023      0.12   11.5   0.0    11    70   355   414   347   430 0.76 Magnesium chelatase, subunit ChlI
Arch_ATPase          PF01637.13   234 sp|P23886|CYDC_ECOLI -            573      0.07   12.8   0.0   1   1   0.00023      0.11   12.1   0.0    21    44   367   390   353   461 0.79 Archaeal ATPase
AAA_17               PF13207.1    121 sp|P23886|CYDC_ECOLI -            573      0.07   13.9   0.0   1   1   0.00031      0.15   12.8   0.0     2    22   369   389   368   525 0.64 AAA domain
TrwB_AAD_bind        PF10412.4    386 sp|P23886|CYDC_ECOLI -            573     0.072   11.6   0.0   1   1   0.00023      0.11   11.0   0.0    15    48   366   399   353   404 0.78 Type IV secretion-system coupling protein DNA-binding domain
AAA_18               PF13238.1    129 sp|P23886|CYDC_ECOLI -            573     0.081   13.2   0.0   1   1   0.00038      0.19   12.0   0.0     1    21   369   389   369   421 0.83 AAA domain
AAA_14               PF13173.1    128 sp|P23886|CYDC_ECOLI -            573     0.087   12.7   0.0   1   1   0.00062      0.31   10.9   0.0     4    27   368   391   365   420 0.80 AAA domain
RNA_helicase         PF00910.17   107 sp|P23886|CYDC_ECOLI -            573     0.099   12.8   0.0   1   1   0.00039      0.19   11.9   0.0     2    23   370   391   369   410 0.85 RNA helicase
AAA_28               PF13521.1    163 sp|P23886|CYDC_ECOLI -            573      0.11   12.4   0.0   1   1   0.00054      0.27   11.2   0.0     2    21   369   388   368   407 0.90 AAA domain
SbcCD_C              PF13558.1     90 sp|P23886|CYDC_ECOLI -            573      0.14   12.1   0.2   1   1    0.0012      0.61   10.0   0.2    49    89   484   518   458   519 0.75 Putative exonuclease SbcCD, C subunit
DUF4337              PF14235.1    157 sp|P23886|CYDC_ECOLI -            573      0.38   10.5   5.8   1   1   0.00033      0.16   11.7   2.5   107   153    10    57     7    59 0.86 Domain of unknown function (DUF4337)
ABC_membrane         PF00664.18   275 sp|P29018|CYDD_ECOLI -            588   1.8e-38  132.5   3.4   1   1   3.4e-41   2.3e-38  132.2   3.4     3   259    26   279    24   297 0.93 ABC transporter transmembrane region
ABC_tran             PF00005.22   137 sp|P29018|CYDD_ECOLI -            588   5.4e-28   98.0   0.0   1   1   1.5e-30     1e-27   97.0   0.0     4   136   369   513   367   514 0.90 ABC transporter
AAA_21               PF13304.1    303 sp|P29018|CYDD_ECOLI -            588   2.6e-10   40.7   0.5   1   2   5.1e-07   0.00035   20.6   0.1     2    29   379   409   379   427 0.73 AAA domain
AAA_21               PF13304.1    303 sp|P29018|CYDD_ECOLI -            588   2.6e-10   40.7   0.5   2   2   4.1e-06    0.0028   17.6   0.0   235   298   484   543   454   548 0.91 AAA domain
SMC_N                PF02463.14   220 sp|P29018|CYDD_ECOLI -            588   9.9e-07   28.2   0.2   1   2   4.1e-05     0.028   13.6   0.0    27    57   379   407   364   424 0.82 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|P29018|CYDD_ECOLI -            588   9.9e-07   28.2   0.2   2   2    0.0001      0.07   12.3   0.0   151   204   496   549   441   560 0.82 RecF/RecN/SMC N terminal domain
DUF258               PF03193.11   161 sp|P29018|CYDD_ECOLI -            588   0.00012   21.3   0.0   1   1     3e-07    0.0002   20.5   0.0    22    57   362   398   346   416 0.78 Protein of unknown function, DUF258
AAA_29               PF13555.1     62 sp|P29018|CYDD_ECOLI -            588   0.00019   20.8   0.1   1   1   5.7e-07   0.00039   19.9   0.1    21    47   374   400   364   411 0.80 P-loop containing region of AAA domain
Zeta_toxin           PF06414.7    201 sp|P29018|CYDD_ECOLI -            588    0.0016   17.5   0.0   1   1   4.6e-06    0.0031   16.6   0.0    20    59   380   419   375   443 0.92 Zeta toxin
MMR_HSR1             PF01926.18   116 sp|P29018|CYDD_ECOLI -            588    0.0017   18.3   0.1   1   1   5.8e-06    0.0039   17.1   0.1     2    21   379   398   378   415 0.89 50S ribosome-binding GTPase
AAA_25               PF13481.1    194 sp|P29018|CYDD_ECOLI -            588    0.0037   16.6   0.2   1   1   1.3e-05    0.0084   15.5   0.2    30    90   373   459   348   546 0.68 AAA domain
AAA_16               PF13191.1    185 sp|P29018|CYDD_ECOLI -            588    0.0068   16.4   2.9   1   1   2.8e-05     0.019   14.9   2.3    27   148   379   503   369   549 0.54 AAA ATPase domain
Dynamin_N            PF00350.18   168 sp|P29018|CYDD_ECOLI -            588     0.022   14.5   1.3   1   1   9.7e-05     0.066   13.0   0.8     2    21   380   399   379   403 0.93 Dynamin family
DUF815               PF05673.8    250 sp|P29018|CYDD_ECOLI -            588     0.046   12.6   0.0   1   1   0.00011     0.072   11.9   0.0    54    92   377   416   371   462 0.82 Protein of unknown function (DUF815)
AAA_30               PF13604.1    196 sp|P29018|CYDD_ECOLI -            588     0.066   12.7   0.1   1   1   0.00036      0.24   10.9   0.1    20    51   378   410   370   549 0.65 AAA domain
DUF2813              PF11398.3    373 sp|P29018|CYDD_ECOLI -            588     0.068   12.2   0.1   1   1   0.00016      0.11   11.5   0.1    23    50   377   404   369   408 0.87 Protein of unknown function (DUF2813)
AAA_17               PF13207.1    121 sp|P29018|CYDD_ECOLI -            588      0.07   13.9   0.0   1   1    0.0002      0.14   13.0   0.0     3    26   380   403   378   529 0.70 AAA domain
AAA_22               PF13401.1    131 sp|P29018|CYDD_ECOLI -            588     0.079   13.1   0.0   1   1   0.00045      0.31   11.2   0.0     7    99   379   516   375   547 0.61 AAA domain
FtsK_SpoIIIE         PF01580.13   205 sp|P29018|CYDD_ECOLI -            588     0.082   12.3   0.0   1   1   0.00021      0.14   11.5   0.0    11    58   348   396   339   402 0.82 FtsK/SpoIIIE family
SbcCD_C              PF13558.1     90 sp|P29018|CYDD_ECOLI -            588       0.1   12.5   0.2   1   1   0.00038      0.26   11.2   0.1    62    89   502   529   481   530 0.81 Putative exonuclease SbcCD, C subunit
AIG1                 PF04548.11   212 sp|P29018|CYDD_ECOLI -            588      0.13   11.3   0.0   1   1   0.00031      0.21   10.6   0.0     2    31   378   407   377   422 0.81 AIG1 family
AAA_23               PF13476.1    202 sp|P29018|CYDD_ECOLI -            588      0.17   12.1   0.0   1   1   0.00043      0.29   11.4   0.0    23    44   380   401   370   424 0.82 AAA domain
AAA_10               PF12846.2    304 sp|P29018|CYDD_ECOLI -            588      0.18   11.2   0.3   1   1   0.00057      0.39   10.1   0.0     5    27   380   402   377   419 0.83 AAA-like domain
YbgT_YccB            PF08173.6     28 sp|P56100|CYDX_ECOLI -             37   6.6e-16   57.8   4.2   1   1   4.9e-20   7.2e-16   57.6   4.2     1    28     1    28     1    28 0.97 Membrane bound YbgT-like protein
Cyanate_lyase        PF02560.9     73 sp|P00816|CYNS_ECOLI -            156     2e-33  113.7   0.0   1   1   1.9e-37   2.8e-33  113.2   0.0     3    72    85   155    83   156 0.95 Cyanate lyase C-terminal domain
Pro_CA               PF00484.14   153 sp|P0ABE9|CYNT_ECOLI -            219   5.9e-49  165.9   0.1   1   1   1.4e-52     7e-49  165.7   0.1     1   152    34   188    34   189 0.87 Carbonic anhydrase
H_kinase_N           PF12282.3    145 sp|P0ABE9|CYNT_ECOLI -            219     0.062   12.9   0.2   1   1     8e-05      0.39   10.3   0.2    46   120   127   211    83   218 0.77 Signal transduction histidine kinase
Lipase_3             PF01764.20   141 sp|P0ABE9|CYNT_ECOLI -            219      0.16   11.5   0.0   1   1   6.6e-05      0.33   10.5   0.0    54    91    81   118    74   141 0.74 Lipase (class 3)
MFS_1                PF07690.11   352 sp|P17583|CYNX_ECOLI -            384   1.8e-23   82.8  46.4   1   2   7.2e-27   1.8e-23   82.8  46.4    14   352    18   337     1   337 0.79 Major Facilitator Superfamily
MFS_2                PF13347.1    428 sp|P17583|CYNX_ECOLI -            384   6.9e-08   31.3  11.7   1   2   0.00013      0.32    9.3   4.1   261   383    35   148    26   151 0.89 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P17583|CYNX_ECOLI -            384   6.9e-08   31.3  11.7   2   2   2.8e-11   6.9e-08   31.3  11.7   130   332   112   306   109   320 0.73 MFS/sugar transport protein
Sugar_tr             PF00083.19   451 sp|P17583|CYNX_ECOLI -            384   0.00085   18.0  14.3   2   2   3.4e-07   0.00085   18.0  14.3    35   192   225   373   193   381 0.77 Sugar (and other) transporter
DUF1228              PF06779.9     85 sp|P17583|CYNX_ECOLI -            384     0.025   14.5  11.6   1   2     9e-05      0.22   11.5   1.1    12    70    20    78    17    93 0.77 Protein of unknown function (DUF1228)
DUF3397              PF11877.3    116 sp|P17583|CYNX_ECOLI -            384       6.7    6.7  13.6   1   2   0.00012       0.3   11.0   0.2     5    85    36   117    32   128 0.65 Protein of unknown function (DUF3397)
COX_ARM              PF06481.9     47 sp|P0ABJ1|CYOA_ECOLI -            315   4.2e-19   67.9   0.6   1   1   2.9e-22   8.7e-19   66.9   0.6     1    47   239   286   239   286 0.98 COX Aromatic Rich Motif
COX2                 PF00116.15   120 sp|P0ABJ1|CYOA_ECOLI -            315     3e-08   33.5   0.0   2   2   6.5e-11   1.9e-07   30.9   0.0    43   116   148   221   127   225 0.94 Cytochrome C oxidase subunit II, periplasmic domain
Cupredoxin_1         PF13473.1    104 sp|P0ABJ1|CYOA_ECOLI -            315    0.0015   18.3   0.0   1   1   1.3e-06     0.004   17.0   0.0     2    89   100   204    97   212 0.83 Cupredoxin-like domain
COX2_TM              PF02790.10    84 sp|P0ABJ1|CYOA_ECOLI -            315     0.041   13.8   1.0   1   1   3.5e-05       0.1   12.5   0.8    27    79    52   105    40   109 0.71 Cytochrome C oxidase subunit II, transmembrane domain
DUF1673              PF07895.6    205 sp|P0ABJ1|CYOA_ECOLI -            315     0.048   13.1   0.1   1   1   2.5e-05     0.075   12.5   0.1    80   143    42   108     8   122 0.71 Protein of unknown function (DUF1673)
COX1                 PF00115.15   447 sp|P0ABI8|CYOB_ECOLI -            663    6e-154  512.9  72.0   1   2    4e-158    6e-154  512.9  72.0     1   446    54   504    54   505 0.98 Cytochrome C and Quinol oxidase polypeptide I
COX3                 PF00510.13   258 sp|P0ABJ3|CYOC_ECOLI -            204   1.9e-18   66.8  17.5   1   1   6.7e-22   3.3e-18   66.0  17.5    65   257    16   202     4   203 0.85 Cytochrome c oxidase subunit III
ACT_6                PF13740.1     76 sp|P0ABJ3|CYOC_ECOLI -            204    0.0063   16.2   0.0   1   1   2.2e-06     0.011   15.4   0.0     1    31   121   151   121   160 0.93 ACT domain
DUF2499              PF10693.4     90 sp|P0ABJ3|CYOC_ECOLI -            204         2    8.5  10.0   2   2   9.6e-05      0.48   10.5   3.5     6    56   145   195   141   200 0.87 Protein of unknown function (DUF2499)
COX4_pro             PF03626.9     75 sp|P0ABJ6|CYOD_ECOLI -            109   2.7e-17   62.5  18.9   1   1   1.3e-20   3.2e-17   62.3  18.9     1    75    18   100    18   100 0.97 Prokaryotic Cytochrome C oxidase subunit IV
DUF1218              PF06749.7     97 sp|P0ABJ6|CYOD_ECOLI -            109      0.18   12.2  10.4   2   2   0.00022      0.53   10.7   3.6     7    58    50   101    44   108 0.78 Protein of unknown function (DUF1218)
FA_hydroxylase       PF04116.8    114 sp|P0ABJ6|CYOD_ECOLI -            109       1.3    9.4  11.9   1   2   2.3e-05     0.057   13.8   4.4    28   100     2    73     1    81 0.81 Fatty acid hydroxylase superfamily
UbiA                 PF01040.13   257 sp|P0AEA5|CYOE_ECOLI -            296   3.1e-33  115.1  26.2   1   1   7.6e-37   3.7e-33  114.8  26.2     5   250    19   267    15   279 0.82 UbiA prenyltransferase family
DUF3040              PF11239.3     82 sp|P0AEA5|CYOE_ECOLI -            296    0.0054   16.7   0.3   2   3   1.1e-06    0.0054   16.7   0.3    41    79    86   124    61   127 0.81 Protein of unknown function (DUF3040)
COX14                PF14880.1     59 sp|P0AEA5|CYOE_ECOLI -            296      0.15   11.7   0.2   1   3     3e-05      0.15   11.7   0.2    16    37    38    59    36    62 0.91 Cytochrome oxidase c assembly
ABC_tran             PF00005.22   137 sp|P16676|CYSA_ECOLI -            365   2.7e-38  131.3   0.0   1   1   1.2e-40   4.4e-38  130.6   0.0     1   136    18   164    18   165 0.97 ABC transporter
TOBE_3               PF12857.2     58 sp|P16676|CYSA_ECOLI -            365   5.7e-11   42.1   0.1   1   1   1.6e-12   6.1e-10   38.8   0.0     3    56   288   339   286   341 0.93 TOBE-like domain
AAA_21               PF13304.1    303 sp|P16676|CYSA_ECOLI -            365   1.4e-08   35.1   0.0   1   2   3.7e-06    0.0014   18.6   0.0     3    24    32    53    30    95 0.79 AAA domain
AAA_21               PF13304.1    303 sp|P16676|CYSA_ECOLI -            365   1.4e-08   35.1   0.0   2   2   7.1e-05     0.026   14.4   0.0   233   297   133   195   128   198 0.85 AAA domain
SMC_N                PF02463.14   220 sp|P16676|CYSA_ECOLI -            365   1.4e-08   34.2   0.0   1   1   6.4e-11   2.4e-08   33.4   0.0    23   213    27   212     1   217 0.78 RecF/RecN/SMC N terminal domain
AAA_16               PF13191.1    185 sp|P16676|CYSA_ECOLI -            365   2.3e-06   27.7   1.5   1   1   1.7e-08   6.2e-06   26.3   1.5    21   151    25   188    12   247 0.66 AAA ATPase domain
AAA_15               PF13175.1    415 sp|P16676|CYSA_ECOLI -            365   5.6e-05   22.3   0.0   1   2    0.0012      0.44    9.5   0.0     6    43     5    51     2    97 0.77 AAA ATPase domain
AAA_15               PF13175.1    415 sp|P16676|CYSA_ECOLI -            365   5.6e-05   22.3   0.0   2   2   0.00042      0.16   11.0   0.0   372   410   157   195   138   198 0.83 AAA ATPase domain
AAA_22               PF13401.1    131 sp|P16676|CYSA_ECOLI -            365    0.0002   21.5   0.1   1   1   2.5e-06   0.00093   19.3   0.1     4   123    28   194    23   201 0.58 AAA domain
DUF258               PF03193.11   161 sp|P16676|CYSA_ECOLI -            365   0.00043   19.4   0.0   1   1   1.9e-06   0.00069   18.8   0.0    20    67    12    60     1    74 0.81 Protein of unknown function, DUF258
NACHT                PF05729.7    166 sp|P16676|CYSA_ECOLI -            365   0.00052   19.7   0.4   1   2   5.3e-05      0.02   14.5   0.1     2    21    30    49    29    61 0.87 NACHT domain
AAA_19               PF13245.1     76 sp|P16676|CYSA_ECOLI -            365    0.0008   19.1   0.0   1   1   6.5e-06    0.0024   17.5   0.0    10    56    28    67    21    78 0.75 Part of AAA domain
AAA_29               PF13555.1     62 sp|P16676|CYSA_ECOLI -            365   0.00095   18.6   0.1   1   1   5.5e-06    0.0021   17.5   0.1    18    40    24    45    16    50 0.84 P-loop containing region of AAA domain
AAA                  PF00004.24   132 sp|P16676|CYSA_ECOLI -            365    0.0011   19.1   0.0   1   1   3.3e-05     0.012   15.7   0.0     2    66    32   162    31   210 0.63 ATPase family associated with various cellular activities (AAA)
KaiC                 PF06745.8    227 sp|P16676|CYSA_ECOLI -            365    0.0012   17.9   0.3   2   2    0.0026      0.95    8.5   0.0   134   168   169   204   164   220 0.81 KaiC
SbcCD_C              PF13558.1     90 sp|P16676|CYSA_ECOLI -            365     0.002   17.9   0.1   1   1   4.9e-05     0.018   14.9   0.1    32    89   136   180   127   181 0.75 Putative exonuclease SbcCD, C subunit
AAA_28               PF13521.1    163 sp|P16676|CYSA_ECOLI -            365     0.002   18.0   0.4   1   1   1.9e-05    0.0071   16.3   0.4     2    69    31   111    30   233 0.72 AAA domain
AAA_25               PF13481.1    194 sp|P16676|CYSA_ECOLI -            365     0.003   17.0   0.2   1   2   0.00015     0.054   12.8   0.0    29    50    24    45     4    63 0.86 AAA domain
AAA_14               PF13173.1    128 sp|P16676|CYSA_ECOLI -            365    0.0044   16.9   0.0   1   2   0.00031      0.12   12.3   0.0     2    49    28    75    27   100 0.63 AAA domain
AAA_24               PF13479.1    213 sp|P16676|CYSA_ECOLI -            365    0.0051   16.4   0.8   1   2   0.00063      0.23   10.9   0.1     3    21    28    46    26    50 0.88 AAA domain
AAA_17               PF13207.1    121 sp|P16676|CYSA_ECOLI -            365    0.0055   17.5   0.4   1   1   4.8e-05     0.018   15.8   0.4     2    22    31    51    30   220 0.83 AAA domain
UPF0079              PF02367.12   123 sp|P16676|CYSA_ECOLI -            365    0.0058   16.2   0.0   1   1   3.1e-05     0.011   15.2   0.0    11    42    24    54    15    90 0.82 Uncharacterised P-loop hydrolase UPF0079
AAA_23               PF13476.1    202 sp|P16676|CYSA_ECOLI -            365    0.0067   16.7   0.1   1   1   3.2e-05     0.012   15.9   0.1    10    39    12    48     2    51 0.69 AAA domain
DLIC                 PF05783.6    472 sp|P16676|CYSA_ECOLI -            365    0.0087   14.7   0.0   1   1   3.4e-05     0.013   14.2   0.0    14    54    17    57    10    74 0.90 Dynein light intermediate chain (DLIC)
AAA_33               PF13671.1    143 sp|P16676|CYSA_ECOLI -            365     0.012   15.4   2.4   1   1   0.00017     0.062   13.1   2.4     1    24    30    50    30   234 0.62 AAA domain
AAA_18               PF13238.1    129 sp|P16676|CYSA_ECOLI -            365     0.014   15.6   0.0   1   1   8.9e-05     0.033   14.4   0.0     1    22    31    52    31    94 0.75 AAA domain
AAA_10               PF12846.2    304 sp|P16676|CYSA_ECOLI -            365     0.017   14.6   0.6   1   1   0.00011      0.04   13.3   0.6     4    32    31    59    28   238 0.76 AAA-like domain
FtsK_SpoIIIE         PF01580.13   205 sp|P16676|CYSA_ECOLI -            365     0.024   14.1   0.0   1   1   0.00013     0.047   13.1   0.0    21    78    11    66     2    73 0.76 FtsK/SpoIIIE family
Arch_ATPase          PF01637.13   234 sp|P16676|CYSA_ECOLI -            365      0.03   14.0   0.0   1   1   0.00025     0.093   12.4   0.0     3    42    13    50    12    75 0.79 Archaeal ATPase
MobB                 PF03205.9    140 sp|P16676|CYSA_ECOLI -            365     0.034   13.8   0.1   1   1   0.00021     0.079   12.6   0.1     2    21    30    49    29    84 0.91 Molybdopterin guanine dinucleotide synthesis protein B
NTPase_1             PF03266.10   168 sp|P16676|CYSA_ECOLI -            365     0.041   13.5   0.1   1   1   0.00042      0.16   11.7   0.0     2    48    31    79    30    85 0.81 NTPase
NB-ARC               PF00931.17   287 sp|P16676|CYSA_ECOLI -            365     0.044   12.6   0.0   1   1   0.00021     0.079   11.7   0.0     9    40    18    49    14    64 0.75 NB-ARC domain
RecA                 PF00154.16   323 sp|P16676|CYSA_ECOLI -            365     0.088   11.8   0.0   1   1   0.00038      0.14   11.1   0.0    50    80    25    54     5    73 0.82 recA bacterial DNA recombination protein
SRP54                PF00448.17   196 sp|P16676|CYSA_ECOLI -            365     0.091   12.1   0.0   1   1   0.00079      0.29   10.5   0.0     3    45    30    72    28    76 0.89 SRP54-type protein, GTPase domain
cobW                 PF02492.14   178 sp|P16676|CYSA_ECOLI -            365     0.095   12.1   0.4   1   1   0.00052      0.19   11.1   0.1     3    21    31    49    29    59 0.80 CobW/HypB/UreG, nucleotide-binding domain
AAA_5                PF07728.9    139 sp|P16676|CYSA_ECOLI -            365       0.1   12.3   0.1   1   1    0.0011      0.39   10.4   0.0     2    22    31    51    30    62 0.86 AAA domain (dynein-related subfamily)
PduV-EutP            PF10662.4    143 sp|P16676|CYSA_ECOLI -            365      0.13   11.7   0.1   1   1   0.00057      0.21   11.0   0.1     4    25    31    52    28    64 0.87 Ethanolamine utilisation - propanediol utilisation
T2SE                 PF00437.15   272 sp|P16676|CYSA_ECOLI -            365      0.14   11.0   1.0   1   2    0.0015      0.55    9.0   0.1   127   149    27    49     7    60 0.79 Type II/IV secretion system protein
Miro                 PF08477.8    119 sp|P16676|CYSA_ECOLI -            365      0.15   12.5   0.0   1   1   0.00074      0.27   11.7   0.0     2    35    31    63    30    80 0.82 Miro-like protein
APS_kinase           PF01583.15   157 sp|P0A6J1|CYSC_ECOLI -            201   4.9e-73  243.9   0.0   1   1   7.7e-76   6.4e-73  243.5   0.0     1   153    27   179    27   182 0.98 Adenylylsulphate kinase
AAA_33               PF13671.1    143 sp|P0A6J1|CYSC_ECOLI -            201   6.3e-08   32.6   0.0   1   1   1.1e-10   9.2e-08   32.0   0.0     1   115    30   143    30   169 0.81 AAA domain
AAA_18               PF13238.1    129 sp|P0A6J1|CYSC_ECOLI -            201   5.4e-05   23.5   0.5   1   1     2e-07   0.00016   21.9   0.5     3   104    33   138    32   153 0.61 AAA domain
AAA_17               PF13207.1    121 sp|P0A6J1|CYSC_ECOLI -            201   5.6e-05   23.9   0.2   1   1   1.3e-07    0.0001   23.0   0.2     3    32    32    64    30   159 0.62 AAA domain
KTI12                PF08433.5    270 sp|P0A6J1|CYSC_ECOLI -            201   0.00064   19.0   0.0   1   1   1.1e-06   0.00087   18.5   0.0     6    58    33    88    29   107 0.85 Chromatin associated protein KTI12
AAA_29               PF13555.1     62 sp|P0A6J1|CYSC_ECOLI -            201    0.0017   17.8   0.0   1   1   3.9e-06    0.0032   16.9   0.0    15    45    20    50    10    58 0.79 P-loop containing region of AAA domain
SRP54                PF00448.17   196 sp|P0A6J1|CYSC_ECOLI -            201      0.01   15.2   0.0   1   1   1.7e-05     0.014   14.8   0.0     3    44    30    71    28    93 0.90 SRP54-type protein, GTPase domain
PRK                  PF00485.13   194 sp|P0A6J1|CYSC_ECOLI -            201     0.022   14.3   0.0   1   1   4.4e-05     0.036   13.6   0.0     4    36    33    65    30    94 0.75 Phosphoribulokinase / Uridine kinase family
AAA_10               PF12846.2    304 sp|P0A6J1|CYSC_ECOLI -            201     0.022   14.2   0.1   1   1   2.7e-05     0.023   14.1   0.1     5    47    32    74    29   198 0.88 AAA-like domain
CbiA                 PF01656.18   195 sp|P0A6J1|CYSC_ECOLI -            201     0.024   14.0   0.1   1   1   3.5e-05     0.029   13.7   0.1     7    37    36    66    31   198 0.81 CobQ/CobB/MinD/ParA nucleotide binding domain
Zeta_toxin           PF06414.7    201 sp|P0A6J1|CYSC_ECOLI -            201      0.04   12.9   0.0   1   1   8.5e-05      0.07   12.2   0.0    16    83    28    97    15   105 0.77 Zeta toxin
Torsin               PF06309.6    127 sp|P0A6J1|CYSC_ECOLI -            201     0.042   13.7   0.2   1   1    0.0001     0.086   12.7   0.0    49    83    24    58     9    78 0.90 Torsin
AAA_16               PF13191.1    185 sp|P0A6J1|CYSC_ECOLI -            201     0.051   13.5   0.5   1   1   8.8e-05     0.072   13.0   0.5    22    52    26    63    19   198 0.82 AAA ATPase domain
AAA_30               PF13604.1    196 sp|P0A6J1|CYSC_ECOLI -            201     0.064   12.8   0.0   1   1   0.00013      0.11   12.1   0.0    17    46    27    56    16    68 0.80 AAA domain
ABC_tran             PF00005.22   137 sp|P0A6J1|CYSC_ECOLI -            201     0.076   13.3   0.0   1   1   0.00014      0.12   12.6   0.0    10    37    27    54    22   138 0.81 ABC transporter
ArgK                 PF03308.11   267 sp|P0A6J1|CYSC_ECOLI -            201     0.081   11.6   0.0   1   1   0.00015      0.12   11.1   0.0    24    58    23    57    10    67 0.84 ArgK protein
Thymidylate_kin      PF02223.12   186 sp|P0A6J1|CYSC_ECOLI -            201      0.15   11.3   0.1   1   1   0.00032      0.26   10.6   0.1     3    27    35    59    33    65 0.87 Thymidylate kinase
ATP_bind_1           PF03029.12   238 sp|P0A6J1|CYSC_ECOLI -            201      0.18   11.3   0.1   1   1   0.00038      0.31   10.5   0.1     2    29    34    61    33    67 0.88 Conserved hypothetical ATP binding protein
PAPS_reduct          PF01507.14   174 sp|P21156|CYSD_ECOLI -            302   9.4e-67  224.1   0.0   1   1   7.6e-71   1.1e-66  223.9   0.0     1   174    29   257    29   257 0.99 Phosphoadenosine phosphosulfate reductase family
SATase_N             PF06426.9    105 sp|P0A9D4|CYSE_ECOLI -            273   3.7e-40  136.4   0.2   1   1   1.1e-43   5.4e-40  135.8   0.2     1   105     9   113     9   113 1.00 Serine acetyltransferase, N-terminal
Hexapep              PF00132.19    36 sp|P0A9D4|CYSE_ECOLI -            273   2.7e-11   42.4   7.5   3   3     2e-13   9.9e-10   37.4   1.0     1    34   193   226   193   228 0.96 Bacterial transferase hexapeptide (six repeats)
Hexapep_2            PF14602.1     34 sp|P0A9D4|CYSE_ECOLI -            273    0.0017   17.8   9.2   3   3   8.4e-07    0.0041   16.6   1.8     7    33   199   227   196   228 0.91 Hexapeptide repeat of succinyl-transferase
TP_methylase         PF00590.15   210 sp|P0AEA8|CYSG_ECOLI -            457     1e-49  169.1   0.1   1   1   5.4e-53   1.6e-49  168.4   0.1     2   209   218   426   217   427 0.92 Tetrapyrrole (Corrin/Porphyrin) Methylases
NAD_binding_7        PF13241.1    103 sp|P0AEA8|CYSG_ECOLI -            457   7.9e-28   96.7   0.1   1   2   2.5e-29   7.3e-26   90.4   0.0     1   103     6   115     6   115 0.89 Putative NAD(P)-binding
CysG_dimeriser       PF10414.4     60 sp|P0AEA8|CYSG_ECOLI -            457   1.8e-19   68.9   0.9   1   1   6.1e-23   1.8e-19   68.9   0.9     2    60   150   209   149   209 0.97 Sirohaem synthase dimerisation region
Sirohm_synth_M       PF14824.1     30 sp|P0AEA8|CYSG_ECOLI -            457   1.1e-05   24.2   0.1   1   1   8.1e-09   2.4e-05   23.1   0.1     3    30   120   147   118   147 0.93 Sirohaem biosynthesis protein central
Radical_SAM          PF04055.16   166 sp|P0AEA8|CYSG_ECOLI -            457     0.029   14.5   0.0   1   1     3e-05      0.09   12.9   0.0    28    82   277   327   265   420 0.87 Radical SAM superfamily
PAPS_reduct          PF01507.14   174 sp|P17854|CYSH_ECOLI -            244   6.3e-52  175.8   0.0   1   1   1.6e-55   7.8e-52  175.5   0.0     2   173    48   219    47   220 0.99 Phosphoadenosine phosphosulfate reductase family
LisH                 PF08513.6     27 sp|P17854|CYSH_ECOLI -            244     0.062   13.0   0.2   1   1   3.1e-05      0.15   11.8   0.2     4    17   187   200   187   201 0.91 LisH
YceG                 PF02618.11   297 sp|P17854|CYSH_ECOLI -            244      0.14   11.2   0.0   1   1   3.6e-05      0.18   10.8   0.0   121   160    76   114    20   131 0.70 YceG-like family
NIR_SIR              PF01077.17   157 sp|P17846|CYSI_ECOLI -            570   2.3e-49  166.7   0.0   1   2   2.8e-47   1.4e-43  147.9   0.0     2   157   173   331   172   331 0.98 Nitrite and sulphite reductase 4Fe-4S domain
NIR_SIR              PF01077.17   157 sp|P17846|CYSI_ECOLI -            570   2.3e-49  166.7   0.0   2   2   6.6e-07    0.0033   16.8   0.0     7   142   430   557   425   559 0.82 Nitrite and sulphite reductase 4Fe-4S domain
NIR_SIR_ferr         PF03460.12    69 sp|P17846|CYSI_ECOLI -            570   7.1e-31  105.6   0.0   1   3   3.1e-16   1.6e-12   46.8   0.0    11    67    81   138    73   140 0.92 Nitrite/Sulfite reductase ferredoxin-like half domain
NIR_SIR_ferr         PF03460.12    69 sp|P17846|CYSI_ECOLI -            570   7.1e-31  105.6   0.0   2   3   1.3e-18   6.6e-15   54.5   0.0     7    68   355   417   350   418 0.94 Nitrite/Sulfite reductase ferredoxin-like half domain
GcpE                 PF04551.9    359 sp|P17846|CYSI_ECOLI -            570    0.0078   15.0   0.0   1   1   2.3e-06     0.011   14.5   0.0   261   344   427   516   371   532 0.80 GcpE protein
PALP                 PF00291.20   306 sp|P0ABK5|CYSK_ECOLI -            323   6.3e-64  216.1   0.3   1   1   1.5e-67   7.3e-64  215.9   0.3     2   305     9   300     8   301 0.87 Pyridoxal-phosphate dependent enzyme
ADH_zinc_N           PF00107.21   130 sp|P0ABK5|CYSK_ECOLI -            323     0.023   14.2   0.2   1   1   0.00011      0.56    9.7   0.2     3    73    74   183    73   195 0.78 Zinc-binding dehydrogenase
DFP                  PF04127.10   185 sp|P0ABK5|CYSK_ECOLI -            323     0.034   13.7   0.1   1   1   1.2e-05     0.059   12.9   0.1    27    79    69   127    65   134 0.78 DNA / pantothenate metabolism flavoprotein
PALP                 PF00291.20   306 sp|P16703|CYSM_ECOLI -            303   5.9e-62  209.6   0.0   1   1     1e-65   7.7e-62  209.2   0.0     2   306     5   281     4   281 0.83 Pyridoxal-phosphate dependent enzyme
HTH_13               PF11972.3     54 sp|P16703|CYSM_ECOLI -            303      0.12   12.2   0.1   2   2   0.00013      0.95    9.3   0.0    15    41   222   248   219   250 0.93 HTH DNA binding domain
GTP_EFTU             PF00009.22   188 sp|P23845|CYSN_ECOLI -            475   4.7e-43  146.8   0.0   1   1   2.3e-46   5.7e-43  146.5   0.0     3   182    27   232    25   314 0.90 Elongation factor Tu GTP binding domain
MMR_HSR1             PF01926.18   116 sp|P23845|CYSN_ECOLI -            475   5.1e-07   29.6   0.0   1   1     5e-10   1.2e-06   28.4   0.0     5   115    33   168    29   169 0.80 50S ribosome-binding GTPase
GTP_EFTU_D2          PF03144.20    74 sp|P23845|CYSN_ECOLI -            475   2.7e-05   24.1   0.2   1   1   2.3e-08   5.7e-05   23.1   0.2     6    73   265   324   261   325 0.83 Elongation factor Tu domain 2
Miro                 PF08477.8    119 sp|P23845|CYSN_ECOLI -            475   0.00057   20.3   0.0   1   1     1e-06    0.0026   18.2   0.0     1    86    29   143    29   171 0.87 Miro-like protein
SRPRB                PF09439.5    181 sp|P23845|CYSN_ECOLI -            475     0.011   14.9   0.0   2   2   0.00025      0.62    9.2   0.0    34    69    92   127    73   140 0.79 Signal recognition particle receptor beta subunit
TM1586_NiRdase       PF14512.1    206 sp|P23845|CYSN_ECOLI -            475     0.029   13.5   0.0   2   2   5.2e-05      0.13   11.4   0.0    84   177   339   435   329   443 0.84 Putative TM nitroreductase
SBP_bac_11           PF13531.1    230 sp|P16700|CYSP_ECOLI -            338   6.2e-41  140.5   0.4   1   1   2.7e-44     8e-41  140.1   0.4     8   230    38   286    34   286 0.88 Bacterial extracellular solute-binding protein
SBP_bac_1            PF01547.20   315 sp|P16700|CYSP_ECOLI -            338     2e-19   70.5   7.7   1   1   8.3e-23   2.4e-19   70.1   7.7     5   314    37   277    33   278 0.86 Bacterial extracellular solute-binding protein
SBP_bac_8            PF13416.1    281 sp|P16700|CYSP_ECOLI -            338     2e-11   44.1   6.9   2   2   2.5e-14   7.5e-11   42.2   7.2    79   269   104   294    47   307 0.75 Bacterial extracellular solute-binding protein
SBP_bac_6            PF13343.1    242 sp|P16700|CYSP_ECOLI -            338   5.1e-09   35.8   0.7   1   1   2.5e-12   7.5e-09   35.2   0.7    54   231   119   306    68   312 0.83 Bacterial extracellular solute-binding protein
PBP_like             PF12727.2    193 sp|P16700|CYSP_ECOLI -            338   3.6e-05   22.8   0.0   1   1   2.1e-08   6.2e-05   22.0   0.0    67   104   118   156   113   183 0.84 PBP superfamily domain
Inositol_P           PF00459.20   271 sp|P22255|CYSQ_ECOLI -            246   5.7e-58  196.3   0.0   1   1   4.5e-62   6.7e-58  196.1   0.0     8   253     4   238     1   243 0.86 Inositol monophosphatase family
BPD_transp_1         PF00528.17   185 sp|P16701|CYST_ECOLI -            277   2.7e-34  118.3  12.4   2   2   1.8e-38   2.7e-34  118.3  12.4     3   183    76   274    74   276 0.97 Binding-protein-dependent transport system inner membrane component
BPD_transp_1         PF00528.17   185 sp|P0AEB0|CYSW_ECOLI -            291   1.7e-16   60.2  11.7   2   2   2.3e-20   1.7e-16   60.2  11.7     2   182    81   275    80   278 0.80 Binding-protein-dependent transport system inner membrane component
EI24                 PF07264.6    219 sp|P0A6J3|CYSZ_ECOLI -            253   1.5e-52  178.2  20.7   1   1   1.2e-56   1.7e-52  178.0  20.7     1   219    11   232    11   232 0.97 Etoposide-induced protein 2.4 (EI24)
Peptidase_S11        PF00768.15   241 sp|P0AEB2|DACA_ECOLI -            403  6.7e-100  333.3   0.1   1   1  2.9e-103  8.7e-100  332.9   0.1     4   240    38   272    35   273 0.98 D-alanyl-D-alanine carboxypeptidase
PBP5_C               PF07943.8     91 sp|P0AEB2|DACA_ECOLI -            403     5e-25   87.3   0.0   1   1   2.9e-28   8.7e-25   86.5   0.0     1    91   292   383   292   383 0.99 Penicillin-binding protein 5, C-terminal domain
Beta-lactamase2      PF13354.1    197 sp|P0AEB2|DACA_ECOLI -            403   2.9e-08   33.4   0.0   1   1   1.3e-11   3.9e-08   32.9   0.0     2   141    55   206    54   249 0.81 Beta-lactamase enzyme family
Phage_G              PF02306.10   179 sp|P0AEB2|DACA_ECOLI -            403      0.12   11.9   0.0   1   1     8e-05      0.24   11.0   0.0   101   147    69   115    59   137 0.90 Major spike protein (G protein)
Peptidase_S13        PF02113.10   444 sp|P24228|DACB_ECOLI -            477  1.8e-178  593.6   0.0   1   1  2.8e-182  2.1e-178  593.4   0.0     2   443    20   468    19   469 0.99 D-Ala-D-Ala carboxypeptidase 3 (S13) family
Beta-lactamase2      PF13354.1    197 sp|P24228|DACB_ECOLI -            477   2.9e-09   36.6   0.3   2   2   7.8e-12   5.8e-08   32.4   0.2    27   195   261   441   252   442 0.75 Beta-lactamase enzyme family
Peptidase_S11        PF00768.15   241 sp|P33013|DACD_ECOLI -            388   1.9e-97  325.2   0.0   1   1    8e-101   2.4e-97  324.9   0.0     4   240    28   262    25   263 0.99 D-alanyl-D-alanine carboxypeptidase
PBP5_C               PF07943.8     91 sp|P33013|DACD_ECOLI -            388   7.8e-23   80.3   0.0   1   1     4e-26   1.2e-22   79.7   0.0     1    90   282   372   282   373 0.98 Penicillin-binding protein 5, C-terminal domain
Beta-lactamase2      PF13354.1    197 sp|P33013|DACD_ECOLI -            388   5.1e-11   42.3   0.0   1   1   2.3e-14   6.7e-11   41.9   0.0     2   175    45   239    44   264 0.74 Beta-lactamase enzyme family
Beta-lactamase       PF00144.19   330 sp|P33013|DACD_ECOLI -            388     0.036   13.0   0.1   1   2   0.00033      0.97    8.3   0.0    53    99    62   121    39   123 0.83 Beta-lactamase
Phage_G              PF02306.10   179 sp|P33013|DACD_ECOLI -            388     0.042   13.4   0.0   1   1   2.3e-05     0.068   12.8   0.0    99   147    57   105    49   118 0.90 Major spike protein (G protein)
Peptidase_S11        PF00768.15   241 sp|P08506|DACC_ECOLI -            400  9.2e-101  336.1   0.4   1   1  3.9e-104  1.2e-100  335.8   0.4     2   241    29   266    28   266 0.99 D-alanyl-D-alanine carboxypeptidase
PBP5_C               PF07943.8     91 sp|P08506|DACC_ECOLI -            400   5.9e-25   87.1   0.0   1   1   3.7e-28   1.1e-24   86.2   0.0     1    91   285   376   285   376 0.99 Penicillin-binding protein 5, C-terminal domain
Beta-lactamase2      PF13354.1    197 sp|P08506|DACC_ECOLI -            400   1.1e-13   51.0   0.1   1   1   4.9e-17   1.5e-13   50.6   0.1     4   144    50   202    47   255 0.75 Beta-lactamase enzyme family
Peptidase_S13        PF02113.10   444 sp|P08506|DACC_ECOLI -            400     0.011   14.2   0.1   1   1   5.4e-06     0.016   13.7   0.1    12    89    35   108    26   133 0.79 D-Ala-D-Ala carboxypeptidase 3 (S13) family
Beta-lactamase       PF00144.19   330 sp|P08506|DACC_ECOLI -            400     0.013   14.5   0.5   1   2   0.00016      0.46    9.4   0.1    45    99    57   124    29   125 0.73 Beta-lactamase
DAO                  PF01266.19   358 sp|P0A6J5|DADA_ECOLI -            432   5.1e-74  249.3   0.5   1   1     8e-77     6e-74  249.1   0.5     2   358     3   397     2   397 0.95 FAD dependent oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|P0A6J5|DADA_ECOLI -            432   8.5e-09   35.5   0.3   1   2   8.1e-08     6e-05   23.0   0.2     1    36     2    37     2    54 0.91 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|P0A6J5|DADA_ECOLI -            432   8.5e-09   35.5   0.3   2   2   0.00056      0.42   10.4   0.0    62   128   187   262   146   277 0.70 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox            PF00070.22    80 sp|P0A6J5|DADA_ECOLI -            432   4.5e-08   33.3   0.1   1   2   1.9e-08   1.4e-05   25.3   0.3     1    33     2    34     2    47 0.91 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P0A6J5|DADA_ECOLI -            432   2.2e-07   31.1   0.2   1   2     7e-05     0.052   13.5   0.3     1    47     4    47     4    70 0.84 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P0A6J5|DADA_ECOLI -            432   2.2e-07   31.1   0.2   2   2     3e-05     0.022   14.8   0.0    84   140   203   259   166   298 0.83 Pyridine nucleotide-disulphide oxidoreductase
FAD_binding_2        PF00890.19   417 sp|P0A6J5|DADA_ECOLI -            432   3.3e-07   29.5   2.0   1   2   9.1e-06    0.0067   15.3   1.6     2    44     3    46     2    53 0.87 FAD binding domain
FAD_binding_2        PF00890.19   417 sp|P0A6J5|DADA_ECOLI -            432   3.3e-07   29.5   2.0   2   2     7e-05     0.052   12.3   0.0   136   206   196   260   142   291 0.69 FAD binding domain
HI0933_like          PF03486.9    409 sp|P0A6J5|DADA_ECOLI -            432   5.9e-07   28.2   0.3   1   3    0.0003      0.22    9.9   0.3     2    33     2    33     1    45 0.92 HI0933-like protein
HI0933_like          PF03486.9    409 sp|P0A6J5|DADA_ECOLI -            432   5.9e-07   28.2   0.3   3   3   8.1e-06     0.006   15.1   0.0   114   168   206   259   193   263 0.92 HI0933-like protein
NAD_binding_8        PF13450.1     68 sp|P0A6J5|DADA_ECOLI -            432   9.9e-07   28.6   0.1   1   1   1.2e-08   8.6e-06   25.6   0.1     1    34     5    38     5    69 0.85 NAD(P)-binding Rossmann-like domain
ApbA                 PF02558.11   151 sp|P0A6J5|DADA_ECOLI -            432   2.4e-05   23.8   0.2   1   1   7.3e-08   5.4e-05   22.6   0.2     1    33     3    34     3    48 0.87 Ketopantoate reductase PanE/ApbA
Amino_oxidase        PF01593.19   450 sp|P0A6J5|DADA_ECOLI -            432   0.00013   21.1   0.0   2   2   1.2e-05    0.0091   15.1   0.0   213   265   205   257   186   273 0.90 Flavin containing amine oxidoreductase
AlaDh_PNT_C          PF01262.16   168 sp|P0A6J5|DADA_ECOLI -            432   0.00014   21.5   0.1   1   1   3.3e-07   0.00025   20.6   0.1    22    59     2    39     1    52 0.85 Alanine dehydrogenase/PNT, C-terminal domain
UDPG_MGDP_dh_N       PF03721.9    185 sp|P0A6J5|DADA_ECOLI -            432    0.0008   18.8   0.1   1   1   1.8e-06    0.0014   18.0   0.1     1    33     1    33     1    49 0.91 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
FAD_binding_3        PF01494.14   356 sp|P0A6J5|DADA_ECOLI -            432    0.0011   18.0   0.7   1   2     1e-05    0.0077   15.3   0.3     3    37     2    36     1    46 0.88 FAD binding domain
3HCDH_N              PF02737.13   180 sp|P0A6J5|DADA_ECOLI -            432    0.0015   18.1   0.8   1   1   4.1e-06     0.003   17.2   0.2     2    38     3    39     2    52 0.84 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
NAD_Gly3P_dh_N       PF01210.18   157 sp|P0A6J5|DADA_ECOLI -            432    0.0059   16.3   0.2   1   1   1.7e-05     0.013   15.2   0.1     2    33     3    34     2    54 0.86 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
GDI                  PF00996.13   439 sp|P0A6J5|DADA_ECOLI -            432     0.024   12.9   0.1   1   1   9.2e-05     0.068   11.4   0.0   235   289   204   258   199   268 0.83 GDP dissociation inhibitor
GIDA                 PF01134.17   392 sp|P0A6J5|DADA_ECOLI -            432     0.033   13.0   0.5   1   2   0.00042      0.31    9.8   0.4     2    39     3    40     2    51 0.81 Glucose inhibited division protein A
TrkA_N               PF02254.13   116 sp|P0A6J5|DADA_ECOLI -            432     0.043   13.8   0.0   1   1   0.00011     0.085   12.8   0.0     1    36     3    38     3    50 0.85 TrkA-N domain
Saccharop_dh         PF03435.13   386 sp|P0A6J5|DADA_ECOLI -            432       0.1   11.5   0.1   1   1   0.00021      0.16   10.9   0.1     1    37     3    37     3    49 0.84 Saccharopine dehydrogenase
NAD_binding_2        PF03446.10   163 sp|P0A6J5|DADA_ECOLI -            432      0.11   12.3   0.0   1   1   0.00026      0.19   11.5   0.0     4    44     3    43     1    84 0.84 NAD binding domain of 6-phosphogluconate dehydrogenase
SPOR                 PF05036.8     76 sp|P11557|DAMX_ECOLI -            428   7.4e-13   48.4   0.1   1   1     2e-16   1.5e-12   47.4   0.1     2    74   345   417   344   419 0.96 Sporulation related domain
DHDPS                PF00701.17   289 sp|P0A6L2|DAPA_ECOLI -            292  1.6e-122  407.6   0.1   1   1  2.3e-126  1.7e-122  407.5   0.1     1   289     1   290     1   290 0.99 Dihydrodipicolinate synthetase family
YCII                 PF03795.9     95 sp|P0A6L2|DAPA_ECOLI -            292      0.12   12.5   0.0   1   1   3.7e-05      0.28   11.4   0.0    40    92   185   232   163   235 0.80 YCII-related domain
DapB_C               PF05173.9    132 sp|P04036|DAPB_ECOLI -            273   5.2e-47  158.9   0.3   1   1   1.5e-50   7.3e-47  158.4   0.3     1   132   132   268   132   268 0.98 Dihydrodipicolinate reductase, C-terminus
DapB_N               PF01113.15   124 sp|P04036|DAPB_ECOLI -            273   5.4e-42  142.6   0.6   1   2   4.9e-45   2.4e-41  140.5   0.1     1   124     6   129     6   129 0.99 Dihydrodipicolinate reductase, N-terminus
NAD_binding_10       PF13460.1    183 sp|P04036|DAPB_ECOLI -            273      0.15   12.0   1.9   1   1   6.3e-05      0.31   11.0   1.9     1   108     8   113     8   151 0.74 NADH(P)-binding
THDPS_N_2            PF14805.1     70 sp|P0A9D8|DAPD_ECOLI -            274   1.3e-29  101.8   1.1   1   1   5.5e-33     2e-29  101.2   1.1     1    70     2    70     2    70 0.98 Tetrahydrodipicolinate N-succinyltransferase N-terminal
Hexapep              PF00132.19    36 sp|P0A9D8|DAPD_ECOLI -            274   2.3e-14   52.1   9.5   2   3     1e-08   3.8e-05   23.0   1.9     1    36   131   166   131   166 0.96 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0A9D8|DAPD_ECOLI -            274   2.3e-14   52.1   9.5   3   3   2.5e-11   9.2e-08   31.2   1.3     2    35   176   209   175   210 0.96 Bacterial transferase hexapeptide (six repeats)
Hexapep_2            PF14602.1     34 sp|P0A9D8|DAPD_ECOLI -            274   1.5e-12   46.8   1.3   2   2   3.9e-16   1.5e-12   46.8   1.3     1    33   175   209   175   210 0.93 Hexapeptide repeat of succinyl-transferase
DUF2766              PF10964.3     79 sp|P0A9D8|DAPD_ECOLI -            274      0.15   11.9   0.0   1   1   8.3e-05      0.31   10.9   0.0    53    73    19    39     3    44 0.91 Protein of unknown function (DUF2766)
Peptidase_M20        PF01546.23   189 sp|P0AED7|DAPE_ECOLI -            375   2.5e-43  147.8   0.1   1   1   9.7e-47   2.9e-43  147.5   0.1     1   188    62   371    62   372 0.97 Peptidase family M20/M25/M40
M20_dimer            PF07687.9    112 sp|P0AED7|DAPE_ECOLI -            375   3.2e-25   88.0   0.0   1   1   2.8e-28   8.2e-25   86.7   0.0     1   111   175   282   175   283 0.97 Peptidase dimerisation domain
Peptidase_M18        PF02127.10   432 sp|P0AED7|DAPE_ECOLI -            375     0.006   15.1   0.0   1   1   2.9e-06    0.0086   14.6   0.0   383   430   321   368   301   370 0.90 Aminopeptidase I zinc metalloprotease (M18)
Peptidase_M28        PF04389.12   179 sp|P0AED7|DAPE_ECOLI -            375     0.029   14.0   0.0   1   2   3.6e-05      0.11   12.2   0.1     2    63    60   136    59   159 0.83 Peptidase family M28
Peptidase_M42        PF05343.9    292 sp|P0AED7|DAPE_ECOLI -            375     0.072   11.8   0.0   2   2   0.00019      0.56    8.9   0.0   223   289   298   362   290   365 0.84 M42 glutamyl aminopeptidase
DAP_epimerase        PF01678.14   121 sp|P0A6K1|DAPF_ECOLI -            274   1.4e-77  257.4   0.7   1   2   1.8e-43   1.3e-39  134.8   0.0     1   120     3   123     3   124 0.98 Diaminopimelate epimerase
DAP_epimerase        PF01678.14   121 sp|P0A6K1|DAPF_ECOLI -            274   1.4e-77  257.4   0.7   2   2   2.4e-39   1.8e-35  121.4   0.2     2   121   152   267   151   267 0.97 Diaminopimelate epimerase
PhzC-PhzF            PF02567.11   281 sp|P0A6K1|DAPF_ECOLI -            274   6.2e-05   22.3   0.0   1   1   1.2e-08   8.7e-05   21.8   0.0    43   222    48   223    45   237 0.83 Phenazine biosynthesis-like protein
Sulfate_transp       PF00916.15   280 sp|P0AFR2|DAUA_ECOLI -            559   8.6e-73  244.7  10.9   1   2   2.3e-76   8.6e-73  244.7  10.9     1   280   119   410   119   410 0.96 Sulfate transporter family
Sulfate_tra_GLY      PF13792.1     84 sp|P0AFR2|DAUA_ECOLI -            559   1.6e-24   85.3   5.5   1   1   4.3e-28   1.6e-24   85.3   5.5     6    82    20    95    12    97 0.96 Sulfate transporter N-terminal domain with GLY motif
STAS                 PF01740.16   117 sp|P0AFR2|DAUA_ECOLI -            559   3.6e-12   45.7   0.0   1   1   1.7e-15   6.2e-12   44.9   0.0     4   115   453   553   451   555 0.95 STAS domain
STAS_2               PF13466.1     80 sp|P0AFR2|DAUA_ECOLI -            559    0.0039   17.1   2.2   3   3   5.1e-06     0.019   14.9   0.0     1    79   462   539   462   540 0.95 STAS domain
Bac_DNA_binding      PF00216.16    90 sp|P0ACF0|DBHA_ECOLI -             90   3.5e-33  113.4   1.4   1   1     1e-36   3.9e-33  113.3   1.4     1    90     1    90     1    90 0.99 Bacterial DNA-binding protein
DUF4496              PF14908.1    140 sp|P0ACF0|DBHA_ECOLI -             90     4e-07   29.9   0.6   1   2   9.5e-08   0.00035   20.4   0.1    88   135    10    56     5    59 0.92 Domain of unknown function (DUF4496)
DUF4496              PF14908.1    140 sp|P0ACF0|DBHA_ECOLI -             90     4e-07   29.9   0.6   2   2   1.2e-05     0.043   13.7   0.0    12    54    32    82    31    89 0.83 Domain of unknown function (DUF4496)
VWA_3                PF13768.1    155 sp|P0ACF0|DBHA_ECOLI -             90     0.034   13.8   0.0   1   1   9.6e-06     0.036   13.7   0.0    13    45    20    50     7    80 0.83 von Willebrand factor type A domain
DUF2267              PF10025.4    125 sp|P0ACF0|DBHA_ECOLI -             90     0.043   13.8   0.1   1   1   1.8e-05     0.065   13.2   0.1     3    44     4    44     2    46 0.92 Uncharacterized conserved protein (DUF2267)
Bac_DNA_binding      PF00216.16    90 sp|P0ACF4|DBHB_ECOLI -             90   2.8e-34  117.0   0.1   1   1   6.2e-38     3e-34  116.8   0.1     1    90     1    90     1    90 1.00 Bacterial DNA-binding protein
DUF4496              PF14908.1    140 sp|P0ACF4|DBHB_ECOLI -             90    0.0028   17.5   0.0   1   1     7e-07    0.0035   17.2   0.0    87   137     9    58     5    79 0.93 Domain of unknown function (DUF4496)
VWA_3                PF13768.1    155 sp|P0ACF4|DBHB_ECOLI -             90     0.074   12.7   0.0   1   1   1.6e-05     0.079   12.6   0.0     7    45    14    53     9    88 0.79 von Willebrand factor type A domain
DEAD                 PF00270.24   169 sp|P21693|DBPA_ECOLI -            457   5.7e-46  156.0   0.0   1   2   9.6e-47   2.4e-43  147.5   0.0     1   166    27   191    27   194 0.95 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|P21693|DBPA_ECOLI -            457   1.8e-23   82.1   0.0   1   1   1.4e-26   3.5e-23   81.2   0.0     3    78   261   336   259   336 0.96 Helicase conserved C-terminal domain
DbpA                 PF03880.10    74 sp|P21693|DBPA_ECOLI -            457     2e-21   75.3   0.0   1   1   1.7e-24   4.2e-21   74.3   0.0     2    73   384   455   383   456 0.98 DbpA RNA binding domain
ResIII               PF04851.10   184 sp|P21693|DBPA_ECOLI -            457   1.1e-05   25.3   0.0   1   1   1.1e-08   2.6e-05   24.1   0.0     4   183    26   188    23   189 0.73 Type III restriction enzyme, res subunit
CMS1                 PF14617.1    252 sp|P21693|DBPA_ECOLI -            457      0.13   11.3   0.0   1   1   0.00014      0.35    9.8   0.0   180   209   125   154   120   164 0.92 U3-containing 90S pre-ribosomal complex subunit
Helicase_RecD        PF05127.9    177 sp|P21693|DBPA_ECOLI -            457      0.13   11.8   0.0   1   1   0.00014      0.33   10.5   0.0     2    99    45   155    44   162 0.77 Helicase
Orn_Arg_deC_N        PF02784.11   251 sp|P00861|DCDA_ECOLI -            420   1.2e-66  224.4   0.0   1   1   3.1e-70   1.5e-66  224.1   0.0     1   251    32   276    32   276 0.97 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Orn_DAP_Arg_deC      PF00278.17   116 sp|P00861|DCDA_ECOLI -            420   6.4e-22   77.4   0.0   1   1   2.1e-25     1e-21   76.7   0.0     1   115   279   396   279   397 0.95 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Ala_racemase_N       PF01168.15   218 sp|P00861|DCDA_ECOLI -            420    0.0063   16.0   0.1   1   1   3.9e-06     0.019   14.5   0.1   116   172   154   211    32   230 0.77 Alanine racemase, N-terminal domain
DCD                  PF06559.6    366 sp|P28248|DCD_ECOLI  -            193     3e-10   39.0   0.0   1   2   9.6e-12   4.7e-08   31.8   0.0    12   127     3   125     2   139 0.88 2'-deoxycytidine 5'-triphosphate deaminase (DCD)
dUTPase              PF00692.14   129 sp|P28248|DCD_ECOLI  -            193   1.3e-08   34.3   0.0   1   1   4.3e-12   2.1e-08   33.6   0.0    22   125    79   185    72   189 0.93 dUTPase
MDMPI_C              PF07398.6     82 sp|P28248|DCD_ECOLI  -            193       0.2   12.2   2.2   1   1   9.6e-05      0.48   11.0   2.2     5    69    59   115    20   128 0.83 MDMPI C-terminal domain
Pyridoxal_deC        PF00282.14   373 sp|P69908|DCEA_ECOLI -            466  1.3e-108  362.8   0.0   1   1  2.1e-112  1.6e-108  362.5   0.0     1   373    33   383    33   383 0.98 Pyridoxal-dependent decarboxylase conserved domain
Aminotran_5          PF00266.14   371 sp|P69908|DCEA_ECOLI -            466   0.00015   20.6   0.0   1   1   3.5e-08   0.00026   19.8   0.0   103   322   164   386   160   424 0.81 Aminotransferase class-V
Pyridoxal_deC        PF00282.14   373 sp|P69910|DCEB_ECOLI -            466  1.3e-108  362.8   0.0   1   1  2.1e-112  1.6e-108  362.5   0.0     1   373    33   383    33   383 0.98 Pyridoxal-dependent decarboxylase conserved domain
Aminotran_5          PF00266.14   371 sp|P69910|DCEB_ECOLI -            466   0.00015   20.6   0.0   1   1   3.5e-08   0.00026   19.8   0.0   103   322   164   386   160   424 0.81 Aminotransferase class-V
OKR_DC_1             PF01276.15   417 sp|P52095|DCLZ_ECOLI -            713  2.1e-194  645.8   0.0   1   1  7.1e-198  2.6e-194  645.5   0.0     1   417   130   545   130   545 1.00 Orn/Lys/Arg decarboxylase, major domain
OKR_DC_1_C           PF03711.10   137 sp|P52095|DCLZ_ECOLI -            713   9.2e-53  177.9   0.0   1   1   5.7e-56   2.1e-52  176.8   0.0     1   135   570   702   570   704 0.99 Orn/Lys/Arg decarboxylase, C-terminal domain
OKR_DC_1_N           PF03709.10   115 sp|P52095|DCLZ_ECOLI -            713   9.2e-27   93.3   0.0   1   1     5e-30   1.9e-26   92.4   0.0     1   115    14   124    14   124 0.99 Orn/Lys/Arg decarboxylase, N-terminal domain
Beta_elim_lyase      PF01212.16   290 sp|P52095|DCLZ_ECOLI -            713     0.034   13.3   0.0   1   2   2.7e-05       0.1   11.7   0.0    33   150   199   321   196   328 0.78 Beta-eliminating lyase
DNA_methylase        PF00145.12   335 sp|P0AED9|DCM_ECOLI  -            472   1.8e-76  257.4   0.0   1   1   3.7e-80   2.7e-76  256.8   0.0     1   331    87   448    87   451 0.88 C-5 cytosine-specific DNA methylase
ASXH                 PF13919.1    138 sp|P0AED9|DCM_ECOLI  -            472     0.079   12.7   0.0   1   1   2.2e-05      0.16   11.7   0.0    36    64    52    80    46   144 0.83 Asx homology domain
OKR_DC_1             PF01276.15   417 sp|P21169|DCOR_ECOLI -            711  2.6e-202  671.9   0.0   1   1  8.4e-206  3.1e-202  671.6   0.0     1   417   101   543   101   543 1.00 Orn/Lys/Arg decarboxylase, major domain
OKR_DC_1_C           PF03711.10   137 sp|P21169|DCOR_ECOLI -            711   1.4e-51  174.1   0.0   2   2   1.5e-54   5.5e-51  172.2   0.0     1   135   568   699   568   701 0.98 Orn/Lys/Arg decarboxylase, C-terminal domain
OKR_DC_1_N           PF03709.10   115 sp|P21169|DCOR_ECOLI -            711   4.4e-14   52.5   0.0   1   1   2.4e-17   8.8e-14   51.5   0.0     1   114     4    94     4    95 0.89 Orn/Lys/Arg decarboxylase, N-terminal domain
Beta_elim_lyase      PF01212.16   290 sp|P21169|DCOR_ECOLI -            711   0.00048   19.3   0.0   1   1   2.2e-07   0.00081   18.6   0.0    31   117   168   263   145   304 0.78 Beta-eliminating lyase
OKR_DC_1             PF01276.15   417 sp|P24169|DCOS_ECOLI -            732    1e-198  660.0   0.0   1   1  4.2e-202  1.2e-198  659.7   0.0     1   417   109   551   109   551 0.99 Orn/Lys/Arg decarboxylase, major domain
OKR_DC_1_C           PF03711.10   137 sp|P24169|DCOS_ECOLI -            732   2.1e-53  180.0   0.2   1   1     2e-56     6e-53  178.5   0.1     1   135   576   707   576   709 0.98 Orn/Lys/Arg decarboxylase, C-terminal domain
OKR_DC_1_N           PF03709.10   115 sp|P24169|DCOS_ECOLI -            732   1.2e-22   80.1   0.0   1   1   7.3e-26   2.2e-22   79.2   0.0     1   115     4   103     4   103 0.99 Orn/Lys/Arg decarboxylase, N-terminal domain
Beta_elim_lyase      PF01212.16   290 sp|P24169|DCOS_ECOLI -            732     0.001   18.2   0.2   1   1   6.5e-07    0.0019   17.3   0.0    35   117   180   271   161   313 0.78 Beta-eliminating lyase
Peptidase_M3         PF01432.15   458 sp|P24171|DCP_ECOLI  -            681  6.6e-147  490.2   0.1   1   1  7.4e-151  1.1e-146  489.5   0.1     2   457   230   678   229   679 0.97 Peptidase family M3
SDF                  PF00375.13   390 sp|P0A830|DCTA_ECOLI -            428  1.4e-114  382.9  40.9   1   1    1e-118  1.6e-114  382.7  40.9     1   390     9   401     9   401 0.97 Sodium:dicarboxylate symporter family
DcuA_DcuB            PF03605.9    364 sp|P0ABN5|DCUA_ECOLI -            433  3.4e-155  516.3  24.6   1   1  1.1e-158  4.1e-155  516.1  24.6     1   364     5   365     5   365 0.99 Anaerobic c4-dicarboxylate membrane transporter
Na_H_antiporter      PF03553.9    303 sp|P0ABN5|DCUA_ECOLI -            433   4.2e-08   32.5  12.6   1   1   1.1e-11   4.2e-08   32.5  12.6   162   301    48   187    43   189 0.92 Na+/H+ antiporter family
CitMHS               PF03600.11   351 sp|P0ABN5|DCUA_ECOLI -            433   4.8e-07   28.6  18.5   1   2   1.3e-10   4.8e-07   28.6  18.5    51   339    45   364     2   375 0.69 Citrate transporter
DUF4305              PF14146.1     38 sp|P0ABN5|DCUA_ECOLI -            433     0.074   12.8   3.9   1   2   0.00012      0.45   10.2   0.1     7    30    37    61    32    65 0.87 Domain of unknown function (DUF4305)
DcuC                 PF03606.10   465 sp|P0ABP3|DCUC_ECOLI -            461  3.5e-137  457.4  49.3   1   1  1.3e-140    4e-137  457.2  49.3     2   464     6   451     5   452 0.99 C4-dicarboxylate anaerobic carrier
DctM                 PF06808.7    416 sp|P0ABP3|DCUC_ECOLI -            461   1.4e-08   33.7  42.1   2   2   4.8e-12   1.4e-08   33.7  42.1    97   412   124   449   117   453 0.79 DctM-like transporters
Na_H_antiporter      PF03553.9    303 sp|P0ABP3|DCUC_ECOLI -            461     0.049   12.6  56.4   2   2   1.5e-06    0.0045   16.0  29.3    26   295   189   444   172   450 0.73 Na+/H+ antiporter family
CitMHS               PF03600.11   351 sp|P0ABP3|DCUC_ECOLI -            461      0.39    9.2  51.6   2   2   2.4e-06     0.007   14.9  23.4    22   191   272   447   266   452 0.71 Citrate transporter
DUF1077              PF06417.7    126 sp|P0ABP3|DCUC_ECOLI -            461       9.6    5.5   9.9   2   2   0.00013      0.39   10.0   1.3    39    95   265   318   263   338 0.69 Protein of unknown function (DUF1077)
DcuA_DcuB            PF03605.9    364 sp|P0ABN9|DCUB_ECOLI -            446  5.4e-164  545.3  20.1   1   1  4.3e-168  6.3e-164  545.0  20.1     1   364     6   376     6   376 0.98 Anaerobic c4-dicarboxylate membrane transporter
DcuC                 PF03606.10   465 sp|P45428|DCUD_ECOLI -            455  1.9e-128  428.6  48.7   1   1    3e-132  2.2e-128  428.4  48.7     1   464     2   454     2   455 0.98 C4-dicarboxylate anaerobic carrier
Oxidored_q5_N        PF01059.12   110 sp|P45428|DCUD_ECOLI -            455     0.024   14.5   0.4   1   6   3.2e-06     0.024   14.5   0.4     1    76     1    76     1    89 0.83 NADH-ubiquinone oxidoreductase chain 4, amino terminus
URO-D                PF01208.12   343 sp|P29680|DCUP_ECOLI -            354  1.9e-140  467.7   0.0   1   1  2.8e-144  2.1e-140  467.5   0.0     2   342     5   347     4   348 0.98 Uroporphyrinogen decarboxylase (URO-D)
XPC-binding          PF09280.6     59 sp|P29680|DCUP_ECOLI -            354     0.034   13.5   0.0   1   1   9.1e-06     0.067   12.6   0.0     8    34   162   188   159   189 0.91 XPC-binding domain
PALP                 PF00291.20   306 sp|P76316|DCYD_ECOLI -            328   3.2e-40  138.2   0.1   1   1   2.4e-44   3.6e-40  138.0   0.1     4   306    15   316    12   316 0.81 Pyridoxal-phosphate dependent enzyme
Dala_Dala_lig_C      PF07478.8    203 sp|P0A6J8|DDLA_ECOLI -            364   7.9e-81  270.3   0.0   1   1   6.5e-84   1.1e-80  269.8   0.0     1   203   147   348   147   348 0.99 D-ala D-ala ligase C-terminus
Dala_Dala_lig_N      PF01820.16   117 sp|P0A6J8|DDLA_ECOLI -            364   2.8e-34  117.9   0.0   1   1   3.3e-37   5.5e-34  116.9   0.0     2   117     5   130     4   130 0.96 D-ala D-ala ligase N-terminus
ATP-grasp_4          PF13535.1    184 sp|P0A6J8|DDLA_ECOLI -            364   1.7e-16   60.5   0.0   1   1   1.8e-19     3e-16   59.7   0.0     2   176   138   317   137   321 0.83 ATP-grasp domain
ATP-grasp            PF02222.17   172 sp|P0A6J8|DDLA_ECOLI -            364   8.4e-13   48.0   0.0   1   1   1.1e-15   1.7e-12   47.0   0.0     2   158   149   317   148   320 0.87 ATP-grasp domain
ATP-grasp_3          PF02655.9    161 sp|P0A6J8|DDLA_ECOLI -            364   9.3e-05   22.3   0.0   1   1   1.4e-07   0.00023   21.0   0.0     1   155   138   317   138   320 0.72 ATP-grasp domain
RimK                 PF08443.6    190 sp|P0A6J8|DDLA_ECOLI -            364    0.0002   20.9   0.0   1   1   4.2e-07   0.00068   19.1   0.0   128   179   277   330   139   337 0.81 RimK-like ATP-grasp domain
ATPgrasp_Ter         PF15632.1    330 sp|P0A6J8|DDLA_ECOLI -            364    0.0039   15.9   0.0   1   2   4.9e-05      0.08   11.6   0.0   100   170   133   203    99   221 0.88 ATP-grasp in the biosynthetic pathway with Ter operon
GARS_A               PF01071.14   194 sp|P0A6J8|DDLA_ECOLI -            364       0.1   12.1   0.0   1   1   0.00011      0.18   11.3   0.0     2   100   140   235   139   248 0.83 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
Dala_Dala_lig_C      PF07478.8    203 sp|P07862|DDLB_ECOLI -            306   3.4e-70  235.5   0.0   1   1   2.8e-73   4.2e-70  235.2   0.0     1   203   103   303   103   303 0.97 D-ala D-ala ligase C-terminus
Dala_Dala_lig_N      PF01820.16   117 sp|P07862|DDLB_ECOLI -            306   1.4e-23   83.3   0.8   1   2   2.8e-12   4.2e-09   36.7   0.0     2    42     4    44     3    54 0.90 D-ala D-ala ligase N-terminus
Dala_Dala_lig_N      PF01820.16   117 sp|P07862|DDLB_ECOLI -            306   1.4e-23   83.3   0.8   2   2   5.8e-15   8.6e-12   45.4   0.3    83   117    52    86    43    86 0.89 D-ala D-ala ligase N-terminus
ATP-grasp_4          PF13535.1    184 sp|P07862|DDLB_ECOLI -            306   4.7e-16   59.0   0.0   1   1   4.9e-19   7.3e-16   58.4   0.0     3   176    95   272    93   276 0.80 ATP-grasp domain
CPSase_L_D2          PF02786.12   211 sp|P07862|DDLB_ECOLI -            306   1.3e-07   31.1   0.0   1   1   4.6e-10   6.8e-07   28.7   0.0    27   179   127   274    96   301 0.82 Carbamoyl-phosphate synthase L chain, ATP binding domain
ATPgrasp_Ter         PF15632.1    330 sp|P07862|DDLB_ECOLI -            306   1.5e-06   27.1   0.0   1   1   4.2e-08   6.2e-05   21.8   0.0   103   279    92   273    81   283 0.78 ATP-grasp in the biosynthetic pathway with Ter operon
RimK                 PF08443.6    190 sp|P07862|DDLB_ECOLI -            306    0.0042   16.5   0.0   1   1   1.4e-05     0.021   14.2   0.0    31   174   129   280    94   285 0.65 RimK-like ATP-grasp domain
TTL                  PF03133.10   294 sp|P07862|DDLB_ECOLI -            306     0.019   13.9   0.0   1   1   2.6e-05     0.039   12.8   0.0   241   267   255   281   247   297 0.91 Tubulin-tyrosine ligase family
ATPgrasp_YheCD       PF14398.1    262 sp|P07862|DDLB_ECOLI -            306     0.035   12.8   0.0   1   1   3.3e-05     0.048   12.4   0.0   214   238   256   280   205   293 0.90 YheC/D like ATP-grasp
GARS_A               PF01071.14   194 sp|P07862|DDLB_ECOLI -            306     0.048   13.2   0.0   1   1   4.2e-05     0.062   12.8   0.0    42   101   142   195    96   302 0.73 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
SBP_bac_5            PF00496.17   374 sp|P76128|DDPA_ECOLI -            516     1e-92  310.8   7.0   1   1   1.1e-96   1.6e-92  310.2   7.0     2   371    78   432    77   434 0.97 Bacterial extracellular solute-binding proteins, family 5 Middle
ABC_tran             PF00005.22   137 sp|P77268|DDPD_ECOLI -            328   2.3e-27   95.9   0.0   1   1   2.7e-30     3e-27   95.5   0.0     1   136    25   184    25   185 0.93 ABC transporter
oligo_HPY            PF08352.7     64 sp|P77268|DDPD_ECOLI -            328   3.5e-18   65.7   0.4   1   1   5.6e-21   6.4e-18   64.8   0.4     1    64   236   300   236   300 0.98 Oligopeptide/dipeptide transporter, C-terminal region
AAA_21               PF13304.1    303 sp|P77268|DDPD_ECOLI -            328   1.4e-06   28.5   0.0   2   2   2.4e-08   2.8e-05   24.2   0.0   233   301   153   219   139   221 0.90 AAA domain
SMC_N                PF02463.14   220 sp|P77268|DDPD_ECOLI -            328   1.1e-05   24.7   0.0   1   1   1.5e-08   1.7e-05   24.1   0.0    26   211    37   230    23   237 0.80 RecF/RecN/SMC N terminal domain
AAA_10               PF12846.2    304 sp|P77268|DDPD_ECOLI -            328      0.01   15.2   0.1   1   2   7.2e-05     0.082   12.3   0.1     6    90    40   141    37   170 0.64 AAA-like domain
AAA_16               PF13191.1    185 sp|P77268|DDPD_ECOLI -            328      0.02   14.8   0.2   1   1   3.1e-05     0.035   14.0   0.2    20    81    31    99    21   213 0.65 AAA ATPase domain
AAA_33               PF13671.1    143 sp|P77268|DDPD_ECOLI -            328     0.026   14.3   0.0   1   1   4.9e-05     0.056   13.3   0.0     2   106    38   152    37   167 0.65 AAA domain
AAA_17               PF13207.1    121 sp|P77268|DDPD_ECOLI -            328     0.044   14.6   0.0   1   1   5.4e-05     0.062   14.1   0.0     1    53    37    90    37   152 0.73 AAA domain
AAA_29               PF13555.1     62 sp|P77268|DDPD_ECOLI -            328     0.044   13.3   0.0   1   1   7.2e-05     0.082   12.4   0.0    15    38    28    50    23    64 0.77 P-loop containing region of AAA domain
AAA_22               PF13401.1    131 sp|P77268|DDPD_ECOLI -            328     0.045   13.8   0.2   1   1   0.00016      0.18   11.9   0.2     5    30    36    61    31   219 0.85 AAA domain
AAA_25               PF13481.1    194 sp|P77268|DDPD_ECOLI -            328     0.048   13.0   0.1   1   2   0.00018       0.2   11.0   0.0    30    98    32   104    24   149 0.66 AAA domain
AAA_15               PF13175.1    415 sp|P77268|DDPD_ECOLI -            328     0.059   12.4   0.1   2   2    0.0003      0.35    9.8   0.0   371   403   176   208   166   220 0.80 AAA ATPase domain
AAA_5                PF07728.9    139 sp|P77268|DDPD_ECOLI -            328     0.078   12.7   0.0   1   1   0.00014      0.16   11.6   0.0     4    30    40    67    37   105 0.78 AAA domain (dynein-related subfamily)
BPD_transp_1         PF00528.17   185 sp|P77463|DDPC_ECOLI -            298   1.6e-31  109.2  12.9   2   2   1.4e-34   1.1e-30  106.5   9.2     1   182   111   292   111   295 0.97 Binding-protein-dependent transport system inner membrane component
OppC_N               PF12911.2     56 sp|P77463|DDPC_ECOLI -            298   1.3e-08   34.1   0.7   1   2   1.7e-12   1.3e-08   34.1   0.7    12    56    27    71    24    71 0.94 N-terminal TM domain of oligopeptide transport permease C
Peptidase_M15        PF01427.12   198 sp|P77790|DDPX_ECOLI -            193   2.2e-75  252.6   0.0   1   1   8.5e-79   3.1e-75  252.1   0.0     2   197     4   186     3   187 0.98 D-ala-D-ala dipeptidase
VanY                 PF02557.12   132 sp|P77790|DDPX_ECOLI -            193   5.3e-10   39.2   0.0   1   1   2.2e-13   8.3e-10   38.6   0.0     4   128    42   167    39   171 0.87 D-alanyl-D-alanine carboxypeptidase
Peptidase_M15_4      PF13539.1     67 sp|P77790|DDPX_ECOLI -            193     0.069   13.5   0.2   1   1   3.3e-05      0.12   12.8   0.2     6    22    95   111    90   168 0.67 D-alanyl-D-alanine carboxypeptidase
WLM                  PF08325.5    186 sp|P77790|DDPX_ECOLI -            193      0.16   11.8   0.0   1   1   5.3e-05       0.2   11.5   0.0    52    89    85   127    34   134 0.75 WLM domain
ABC_tran             PF00005.22   137 sp|P77622|DDPF_ECOLI -            308   4.6e-27   94.9   0.0   1   1   1.5e-29   7.1e-27   94.3   0.0     2   137    33   171    32   171 0.86 ABC transporter
oligo_HPY            PF08352.7     64 sp|P77622|DDPF_ECOLI -            308   1.9e-17   63.3   0.1   1   1     7e-20   3.4e-17   62.5   0.1     1    64   222   287   222   287 0.98 Oligopeptide/dipeptide transporter, C-terminal region
AAA_21               PF13304.1    303 sp|P77622|DDPF_ECOLI -            308   1.1e-11   45.2   0.0   1   2   0.00044      0.21   11.5   0.0     3    25    46    70    44    98 0.77 AAA domain
AAA_21               PF13304.1    303 sp|P77622|DDPF_ECOLI -            308   1.1e-11   45.2   0.0   2   2   2.2e-10   1.1e-07   32.1   0.0   220   302   126   206    86   207 0.81 AAA domain
AAA_22               PF13401.1    131 sp|P77622|DDPF_ECOLI -            308   5.2e-07   29.8   0.0   1   1   2.5e-09   1.2e-06   28.7   0.0     9   123    47   200    39   207 0.82 AAA domain
AAA_16               PF13191.1    185 sp|P77622|DDPF_ECOLI -            308   9.5e-06   25.7   0.1   1   1   3.8e-08   1.8e-05   24.7   0.1    22   179    40   194    20   206 0.60 AAA ATPase domain
AAA_25               PF13481.1    194 sp|P77622|DDPF_ECOLI -            308   8.3e-05   22.0   0.0   1   1   3.7e-07   0.00017   21.0   0.0    30   188    39   201    26   204 0.71 AAA domain
SMC_N                PF02463.14   220 sp|P77622|DDPF_ECOLI -            308   0.00012   21.3   0.1   2   2   0.00011     0.052   12.7   0.0   136   212   142   216   108   222 0.78 RecF/RecN/SMC N terminal domain
AAA_18               PF13238.1    129 sp|P77622|DDPF_ECOLI -            308   0.00061   20.0   0.0   1   1     4e-06    0.0019   18.4   0.0     3    68    47   119    45   218 0.82 AAA domain
AAA_17               PF13207.1    121 sp|P77622|DDPF_ECOLI -            308   0.00086   20.1   0.0   1   1   3.2e-06    0.0015   19.3   0.0     3    66    46   127    44   198 0.73 AAA domain
AAA                  PF00004.24   132 sp|P77622|DDPF_ECOLI -            308   0.00096   19.3   0.0   1   1   1.5e-05    0.0073   16.5   0.0     3   112    47   203    45   214 0.72 ATPase family associated with various cellular activities (AAA)
DUF258               PF03193.11   161 sp|P77622|DDPF_ECOLI -            308    0.0023   17.1   0.3   1   1   1.5e-05    0.0071   15.5   0.1    26    61    32    68    18    83 0.76 Protein of unknown function, DUF258
Sigma54_activat      PF00158.21   168 sp|P77622|DDPF_ECOLI -            308    0.0027   17.2   0.0   1   2   0.00018     0.088   12.2   0.0    10    56    30    76    21    90 0.75 Sigma-54 interaction domain
NACHT                PF05729.7    166 sp|P77622|DDPF_ECOLI -            308    0.0046   16.6   0.0   1   1   3.6e-05     0.017   14.7   0.0     2    28    44    70    43   125 0.84 NACHT domain
AAA_29               PF13555.1     62 sp|P77622|DDPF_ECOLI -            308    0.0054   16.2   0.1   1   1   2.8e-05     0.014   14.9   0.0    16    51    36    70    28    79 0.74 P-loop containing region of AAA domain
AAA_5                PF07728.9    139 sp|P77622|DDPF_ECOLI -            308      0.01   15.5   0.2   1   1   0.00014     0.068   12.8   0.1     4    24    47    68    45    81 0.84 AAA domain (dynein-related subfamily)
RNA_helicase         PF00910.17   107 sp|P77622|DDPF_ECOLI -            308     0.014   15.6   0.0   1   1   5.3e-05     0.025   14.7   0.0     3    24    47    68    45   103 0.79 RNA helicase
ATP-synt_ab          PF00006.20   215 sp|P77622|DDPF_ECOLI -            308     0.015   14.8   0.0   1   1   4.3e-05     0.021   14.3   0.0    12    37    39    64    31   144 0.91 ATP synthase alpha/beta family, nucleotide-binding domain
AAA_10               PF12846.2    304 sp|P77622|DDPF_ECOLI -            308     0.018   14.4   0.1   1   2   0.00027      0.13   11.6   0.0     6    31    47    73    43    91 0.80 AAA-like domain
AAA_33               PF13671.1    143 sp|P77622|DDPF_ECOLI -            308      0.02   14.7   0.0   1   1   8.8e-05     0.042   13.7   0.0     4    46    47    94    45   179 0.72 AAA domain
AAA_15               PF13175.1    415 sp|P77622|DDPF_ECOLI -            308     0.029   13.4   0.2   2   2     0.001      0.49    9.3   0.0   364   402   158   193   151   205 0.80 AAA ATPase domain
SbcCD_C              PF13558.1     90 sp|P77622|DDPF_ECOLI -            308     0.046   13.6   0.0   1   1   0.00027      0.13   12.2   0.0    33    89   143   186   115   187 0.77 Putative exonuclease SbcCD, C subunit
Mg_chelatase         PF01078.16   207 sp|P77622|DDPF_ECOLI -            308     0.083   12.0   0.1   1   1    0.0003      0.14   11.2   0.1    23    51    43    71    24    90 0.82 Magnesium chelatase, subunit ChlI
PRK                  PF00485.13   194 sp|P77622|DDPF_ECOLI -            308      0.11   12.1   0.0   1   1   0.00035      0.17   11.4   0.0     2    24    45    67    44    93 0.82 Phosphoribulokinase / Uridine kinase family
Sigma54_activ_2      PF14532.1    138 sp|P77622|DDPF_ECOLI -            308      0.11   12.5   0.1   1   1   0.00057      0.27   11.2   0.0    22    57    43    78    22   129 0.65 Sigma-54 interaction domain
Propep_M14           PF02244.11    74 sp|P77622|DDPF_ECOLI -            308      0.13   11.9   0.1   1   1   0.00052      0.25   11.0   0.1    15    67   155   204   147   206 0.91 Carboxypeptidase activation peptide
NB-ARC               PF00931.17   287 sp|P77622|DDPF_ECOLI -            308      0.14   11.0   0.2   1   1   0.00068      0.32    9.7   0.1    21    37    44    60    28    73 0.88 NB-ARC domain
Rad17                PF03215.10   519 sp|P77622|DDPF_ECOLI -            308      0.15   10.7   0.0   1   1   0.00055      0.26    9.8   0.0    40    78    37    75    24    92 0.81 Rad17 cell cycle checkpoint protein
Miro                 PF08477.8    119 sp|P77622|DDPF_ECOLI -            308      0.18   12.3   0.0   1   1   0.00067      0.32   11.5   0.0     3    25    46    68    44   105 0.79 Miro-like protein
KaiC                 PF06745.8    227 sp|P77622|DDPF_ECOLI -            308       0.2   10.7   0.2   1   1    0.0011      0.54    9.3   0.0    16    37    39    60    30    73 0.87 KaiC
BPD_transp_1         PF00528.17   185 sp|P77308|DDPB_ECOLI -            340     2e-45  154.5  12.9   2   2   2.7e-49     2e-45  154.5  12.9     1   183   115   334   115   336 0.99 Binding-protein-dependent transport system inner membrane component
DEAD                 PF00270.24   169 sp|P0A9P6|DEAD_ECOLI -            629   3.9e-50  169.6   0.0   1   2   2.9e-52   7.1e-49  165.5   0.0     2   167    31   195    30   197 0.97 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|P0A9P6|DEAD_ECOLI -            629   2.5e-26   91.3   0.3   1   1   4.1e-29     1e-25   89.3   0.0     2    78   264   340   263   340 0.98 Helicase conserved C-terminal domain
DbpA                 PF03880.10    74 sp|P0A9P6|DEAD_ECOLI -            629     1e-22   79.5   0.0   1   1   9.7e-26   2.4e-22   78.3   0.0     3    73   489   559   487   560 0.97 DbpA RNA binding domain
DEADboxA             PF12343.3     63 sp|P0A9P6|DEAD_ECOLI -            629   4.4e-13   49.2  41.8   1   1   1.8e-16   4.4e-13   49.2  41.8     1    63   568   629   568   629 0.95 Cold shock protein DEAD box A
ResIII               PF04851.10   184 sp|P0A9P6|DEAD_ECOLI -            629    0.0026   17.6   0.0   1   1   2.6e-06    0.0065   16.3   0.0    32    80    50   104    28   136 0.78 Type III restriction enzyme, res subunit
CMS1                 PF14617.1    252 sp|P0A9P6|DEAD_ECOLI -            629    0.0033   16.5   0.7   1   1   2.2e-06    0.0054   15.8   0.0   126   209    74   157    65   193 0.82 U3-containing 90S pre-ribosomal complex subunit
SNARE_assoc          PF09335.6    123 sp|P0ABP6|DEDA_ECOLI -            219   7.7e-27   93.9   5.5   2   2   1.6e-30   7.8e-27   93.9   3.0     1   123    49   177    49   177 0.96 SNARE associated Golgi protein
CTP_transf_1         PF01148.15   259 sp|P0ABP6|DEDA_ECOLI -            219     0.011   15.4   3.2   1   2   2.1e-06     0.011   15.4   3.2    78   158    20   101     1   107 0.58 Cytidylyltransferase family
SPOR                 PF05036.8     76 sp|P09549|DEDD_ECOLI -            220   2.2e-11   43.7   0.0   1   1   4.5e-15   3.3e-11   43.1   0.0     2    74   141   214   140   216 0.94 Sporulation related domain
Pep_deformylase      PF01327.16   157 sp|P0A6K3|DEF_ECOLI  -            169   6.9e-53  178.2   0.1   1   1   1.1e-56   8.3e-53  177.9   0.1     2   156     4   152     3   153 0.94 Polypeptide deformylase
Peptidase_C23        PF05379.6     89 sp|P0A6K3|DEF_ECOLI  -            169     0.037   14.0   0.1   1   2   8.9e-05      0.66    9.9   0.1    10    72    17    76    14    92 0.88 Carlavirus endopeptidase
PDZ                  PF00595.19    81 sp|P0C0V0|DEGP_ECOLI -            474   3.2e-29  100.9   8.2   1   2   4.3e-19   9.1e-16   57.8   0.1     7    80   285   367   279   368 0.90 PDZ domain (Also known as DHR or GLGF)
PDZ                  PF00595.19    81 sp|P0C0V0|DEGP_ECOLI -            474   3.2e-29  100.9   8.2   2   2   6.6e-15   1.4e-11   44.4   3.2    11    81   394   463   385   463 0.89 PDZ domain (Also known as DHR or GLGF)
PDZ_2                PF13180.1     82 sp|P0C0V0|DEGP_ECOLI -            474   2.1e-26   91.5   2.4   1   2   2.1e-18   4.4e-15   55.3   0.0    12    82   300   380   285   380 0.88 PDZ domain
PDZ_2                PF13180.1     82 sp|P0C0V0|DEGP_ECOLI -            474   2.1e-26   91.5   2.4   2   2   4.4e-12   9.3e-09   35.0   0.6     4    59   399   454   396   471 0.87 PDZ domain
Trypsin_2            PF13365.1    120 sp|P0C0V0|DEGP_ECOLI -            474   8.5e-21   74.1   0.6   1   1   9.3e-24     2e-20   72.9   0.6     1   120   114   250   114   250 0.78 Trypsin-like peptidase domain
Trypsin              PF00089.21   220 sp|P0C0V0|DEGP_ECOLI -            474   1.5e-20   73.7   0.3   1   1   1.1e-23   2.4e-20   73.0   0.3    21   218   114   275    87   277 0.83 Trypsin
PDZ_1                PF12812.2     78 sp|P0C0V0|DEGP_ECOLI -            474    0.0043   16.9   0.1   1   2   0.00028      0.59   10.0   0.0    21    68   301   350   292   359 0.80 PDZ-like domain
Peptidase_S46        PF10459.4    698 sp|P0C0V0|DEGP_ECOLI -            474     0.032   12.6   0.8   2   2   7.7e-05      0.16   10.3   0.4   626   650   227   251   216   253 0.85 Peptidase S46
PDZ                  PF00595.19    81 sp|P39099|DEGQ_ECOLI -            455   9.4e-29   99.4   6.9   2   3   2.1e-18   3.1e-15   56.1   0.0     5    80   261   345   257   346 0.94 PDZ domain (Also known as DHR or GLGF)
PDZ                  PF00595.19    81 sp|P39099|DEGQ_ECOLI -            455   9.4e-29   99.4   6.9   3   3   1.2e-14   1.8e-11   44.0   1.2    12    80   376   443   366   444 0.87 PDZ domain (Also known as DHR or GLGF)
PDZ_2                PF13180.1     82 sp|P39099|DEGQ_ECOLI -            455     1e-28   99.0   0.6   1   2   7.9e-21   1.2e-17   63.5   0.0     7    82   273   358   267   358 0.89 PDZ domain
PDZ_2                PF13180.1     82 sp|P39099|DEGQ_ECOLI -            455     1e-28   99.0   0.6   2   2   2.5e-11   3.7e-08   33.1   0.2    13    59   389   435   375   451 0.86 PDZ domain
Trypsin_2            PF13365.1    120 sp|P39099|DEGQ_ECOLI -            455   6.4e-20   71.3   0.3   1   1   7.4e-23   1.1e-19   70.5   0.3     1   120    92   228    92   228 0.80 Trypsin-like peptidase domain
Trypsin              PF00089.21   220 sp|P39099|DEGQ_ECOLI -            455   1.2e-16   60.9   0.0   1   1   1.4e-19     2e-16   60.2   0.0    28   215    93   250    84   254 0.82 Trypsin
Tricorn_PDZ          PF14685.1     88 sp|P39099|DEGQ_ECOLI -            455     0.002   17.9   0.2   1   2   0.00043      0.63    9.8   0.0    36    79   306   348   284   358 0.81 Tricorn protease PDZ domain
GRASP55_65           PF04495.9    138 sp|P39099|DEGQ_ECOLI -            455    0.0021   18.0   0.0   2   2   1.5e-05     0.022   14.7   0.0    42    86   389   432   353   445 0.76 GRASP55/65 PDZ-like domain
Peptidase_S46        PF10459.4    698 sp|P39099|DEGQ_ECOLI -            455    0.0044   15.5   0.4   2   2   9.2e-05      0.14   10.5   0.9   626   650   205   229   198   231 0.86 Peptidase S46
PDZ_1                PF12812.2     78 sp|P39099|DEGQ_ECOLI -            455     0.016   15.1   0.0   1   2   0.00014      0.21   11.5   0.0    17    67   275   327   270   334 0.83 PDZ-like domain
DUF3394              PF11874.3    183 sp|P39099|DEGQ_ECOLI -            455     0.073   12.6   0.0   1   1   0.00013      0.19   11.2   0.0    88   169   348   441   320   449 0.62 Domain of unknown function (DUF3394)
Complex1_51K         PF01512.12   151 sp|P39099|DEGQ_ECOLI -            455       0.1   12.3   0.0   2   2   0.00044      0.65    9.7   0.1    52   106   394   446   391   451 0.88 Respiratory-chain NADH dehydrogenase 51 Kd subunit
Trypsin              PF00089.21   220 sp|P0AEE3|DEGS_ECOLI -            355   6.7e-17   61.8   0.0   1   1   4.8e-20   1.4e-16   60.7   0.0    23   214    72   239    50   245 0.79 Trypsin
Trypsin_2            PF13365.1    120 sp|P0AEE3|DEGS_ECOLI -            355   1.1e-16   60.9   0.5   1   1   5.5e-20   1.6e-16   60.3   0.5     1   120    80   215    80   215 0.83 Trypsin-like peptidase domain
PDZ_2                PF13180.1     82 sp|P0AEE3|DEGS_ECOLI -            355   9.7e-14   51.0   0.5   2   2   1.3e-16   3.7e-13   49.1   0.2     3    82   259   348   257   348 0.87 PDZ domain
PDZ                  PF00595.19    81 sp|P0AEE3|DEGS_ECOLI -            355   4.3e-11   42.8   1.4   2   2   1.5e-14   4.3e-11   42.8   1.4    10    80   257   335   248   336 0.77 PDZ domain (Also known as DHR or GLGF)
Peptidase_S46        PF10459.4    698 sp|P0AEE3|DEGS_ECOLI -            355      0.14   10.5   1.4   2   2   0.00028      0.82    8.0   0.9   623   650   188   216   181   226 0.82 Peptidase S46
Metalloenzyme        PF01676.13   252 sp|P0A6K6|DEOB_ECOLI -            407   2.5e-60  204.0   0.0   1   1   3.8e-64   2.8e-60  203.8   0.0     1   251     2   405     2   406 0.97 Metalloenzyme superfamily
Phosphodiest         PF01663.17   365 sp|P0A6K6|DEOB_ECOLI -            407     0.013   14.8   0.0   1   1   2.3e-06     0.017   14.4   0.0   163   248   274   353   219   392 0.79 Type I phosphodiesterase / nucleotide pyrophosphatase
DeoC                 PF01791.4    236 sp|P0A6L0|DEOC_ECOLI -            259     5e-61  206.0   1.7   1   1   1.1e-64   5.5e-61  205.8   1.7     3   230    12   240    10   246 0.94 DeoC/LacD family aldolase
His_biosynth         PF00977.16   229 sp|P0A6L0|DEOC_ECOLI -            259      0.03   13.5   0.2   2   2   6.6e-05      0.33   10.1   0.0    51    94   175   218   172   231 0.89 Histidine biosynthesis protein
Talin_middle         PF09141.5    161 sp|P0A6L0|DEOC_ECOLI -            259     0.033   13.8   0.2   1   1   1.3e-05     0.063   12.9   0.0   106   154   109   158    71   166 0.86 Talin, middle domain
PNP_UDP_1            PF01048.15   234 sp|P0ABP8|DEOD_ECOLI -            239   3.6e-43  147.2   1.3   1   1   5.6e-47   4.2e-43  147.0   1.3     2   213    16   217    15   234 0.88 Phosphorylase superfamily
Lipase_2             PF01674.13   219 sp|P0ABP8|DEOD_ECOLI -            239     0.081   12.2   0.0   1   1   2.4e-05      0.18   11.0   0.0    54    87    35    68    20    71 0.84 Lipase (class 2)
MMR_HSR1             PF01926.18   116 sp|P0A6P5|DER_ECOLI  -            490   1.3e-53  179.8   0.0   1   2   1.9e-29   8.7e-27   93.3   0.0     2   116     5   119     4   119 0.94 50S ribosome-binding GTPase
MMR_HSR1             PF01926.18   116 sp|P0A6P5|DER_ECOLI  -            490   1.3e-53  179.8   0.0   2   2   1.2e-26   5.3e-24   84.4   0.1     2   116   205   322   204   322 0.88 50S ribosome-binding GTPase
FeoB_N               PF02421.13   156 sp|P0A6P5|DER_ECOLI  -            490   6.2e-31  106.7   0.0   1   2   8.6e-19   3.9e-16   58.7   0.0     3   155     5   157     3   158 0.84 Ferrous iron transport protein B
FeoB_N               PF02421.13   156 sp|P0A6P5|DER_ECOLI  -            490   6.2e-31  106.7   0.0   2   2   6.2e-15   2.8e-12   46.1   0.1     2   155   204   367   203   368 0.84 Ferrous iron transport protein B
KH_dom-like          PF14714.1     80 sp|P0A6P5|DER_ECOLI  -            490   5.6e-28   96.7   0.0   1   1   3.7e-30   1.6e-27   95.2   0.0     1    80   378   458   378   458 0.98 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
GTP_EFTU             PF00009.22   188 sp|P0A6P5|DER_ECOLI  -            490   3.3e-22   78.8   0.1   1   2   3.1e-07   0.00014   21.3   0.0    89   138    77   126     2   161 0.70 Elongation factor Tu GTP binding domain
GTP_EFTU             PF00009.22   188 sp|P0A6P5|DER_ECOLI  -            490   3.3e-22   78.8   0.1   2   2     2e-14   9.1e-12   44.7   0.1     5   184   204   370   201   374 0.81 Elongation factor Tu GTP binding domain
Miro                 PF08477.8    119 sp|P0A6P5|DER_ECOLI  -            490   9.4e-17   61.6   0.0   1   2   2.4e-09   1.1e-06   29.1   0.0     2   119     5   121     4   121 0.84 Miro-like protein
Miro                 PF08477.8    119 sp|P0A6P5|DER_ECOLI  -            490   9.4e-17   61.6   0.0   2   2   1.2e-09   5.3e-07   30.1   0.0     1   103   204   314   204   324 0.64 Miro-like protein
Dynamin_N            PF00350.18   168 sp|P0A6P5|DER_ECOLI  -            490   1.3e-10   41.3   0.1   2   4   0.00062      0.28   10.9   0.0   106   167    55   119    27   120 0.81 Dynamin family
Dynamin_N            PF00350.18   168 sp|P0A6P5|DER_ECOLI  -            490   1.3e-10   41.3   0.1   3   4   0.00019     0.086   12.6   0.0     1    36   205   241   205   251 0.76 Dynamin family
AIG1                 PF04548.11   212 sp|P0A6P5|DER_ECOLI  -            490     9e-10   38.0   0.0   1   2   0.00027      0.12   11.4   0.0     4   108     6   107     4   109 0.80 AIG1 family
AIG1                 PF04548.11   212 sp|P0A6P5|DER_ECOLI  -            490     9e-10   38.0   0.0   2   2   3.2e-08   1.4e-05   24.2   0.1     3   105   205   307   203   319 0.87 AIG1 family
DUF258               PF03193.11   161 sp|P0A6P5|DER_ECOLI  -            490   4.3e-07   29.2   0.0   1   2   0.00026      0.11   11.6   0.0    38    65     5    32     3    65 0.79 Protein of unknown function, DUF258
DUF258               PF03193.11   161 sp|P0A6P5|DER_ECOLI  -            490   4.3e-07   29.2   0.0   2   2   2.4e-05     0.011   14.9   0.0    38   101   205   264   174   286 0.79 Protein of unknown function, DUF258
Ras                  PF00071.17   162 sp|P0A6P5|DER_ECOLI  -            490   1.4e-06   27.8   0.0   2   2   1.5e-05    0.0068   15.8   0.0     1   157   204   369   204   373 0.71 Ras family
AAA_17               PF13207.1    121 sp|P0A6P5|DER_ECOLI  -            490   7.8e-06   26.7   0.1   1   2    0.0016       0.7   10.7   0.0     1    21     4    24     4   108 0.75 AAA domain
AAA_17               PF13207.1    121 sp|P0A6P5|DER_ECOLI  -            490   7.8e-06   26.7   0.1   2   2   0.00033      0.15   12.9   0.0     2    32   205   235   204   305 0.69 AAA domain
AAA_18               PF13238.1    129 sp|P0A6P5|DER_ECOLI  -            490   5.5e-05   23.4   0.0   2   2   0.00075      0.34   11.2   0.0     2    23   206   233   205   312 0.68 AAA domain
MobB                 PF03205.9    140 sp|P0A6P5|DER_ECOLI  -            490   6.6e-05   22.6   0.0   1   2   0.00061      0.27   10.9   0.0     1    22     3    24     3    28 0.91 Molybdopterin guanine dinucleotide synthesis protein B
ABC_tran             PF00005.22   137 sp|P0A6P5|DER_ECOLI  -            490   9.1e-05   22.7   0.0   2   2   0.00097      0.44   10.8   0.0    13    36   204   227   202   299 0.88 ABC transporter
cobW                 PF02492.14   178 sp|P0A6P5|DER_ECOLI  -            490    0.0003   20.3   3.4   4   4    0.0019      0.87    9.0   0.2    85   166   250   337   235   340 0.70 CobW/HypB/UreG, nucleotide-binding domain
NTPase_1             PF03266.10   168 sp|P0A6P5|DER_ECOLI  -            490   0.00068   19.3   0.2   2   2     0.002      0.88    9.2   0.1     2    30   205   233   204   342 0.83 NTPase
AAA_33               PF13671.1    143 sp|P0A6P5|DER_ECOLI  -            490    0.0021   17.9   0.0   1   2    0.0018       0.8    9.5   0.0     1    31     4    34     4    57 0.81 AAA domain
ATP_bind_1           PF03029.12   238 sp|P0A6P5|DER_ECOLI  -            490    0.0026   17.3   0.0   3   3   0.00072      0.32   10.4   0.0    90   184   249   341   223   393 0.72 Conserved hypothetical ATP binding protein
SRPRB                PF09439.5    181 sp|P0A6P5|DER_ECOLI  -            490    0.0027   16.9   0.0   1   2   0.00063      0.28   10.3   0.0     4    85     3    91     1   106 0.60 Signal recognition particle receptor beta subunit
Guanylate_kin        PF00625.16   183 sp|P0A6P5|DER_ECOLI  -            490    0.0073   15.7   0.0   2   2    0.0005      0.22   10.9   0.0     6    60   206   261   203   276 0.80 Guanylate kinase
Peripla_BP_4         PF13407.1    257 sp|P0AEE5|DGAL_ECOLI -            332   4.8e-64  216.1  14.3   1   1   1.6e-67   5.9e-64  215.9  14.3     1   256    28   299    28   300 0.97 Periplasmic binding protein domain
Peripla_BP_1         PF00532.16   279 sp|P0AEE5|DGAL_ECOLI -            332   8.2e-10   38.3   3.1   1   1   9.3e-13   3.4e-09   36.3   3.1     6   208    30   254    25   268 0.82 Periplasmic binding proteins and sugar binding domain of LacI family
Peripla_BP_3         PF13377.1    160 sp|P0AEE5|DGAL_ECOLI -            332   1.3e-05   25.2   0.0   1   1   6.9e-09   2.6e-05   24.2   0.0    11   146   165   304   158   315 0.85 Periplasmic binding protein-like domain
FliH                 PF02108.11   128 sp|P0AEE5|DGAL_ECOLI -            332     0.017   14.9   0.3   1   1   8.9e-06     0.033   14.0   0.3    17    82     4    69     1    91 0.87 Flagellar assembly protein FliH
Aldolase             PF01081.14   196 sp|Q6BF16|DGOA_ECOLI -            205   1.7e-29  102.3   0.4   1   1   2.9e-33   2.1e-29  102.0   0.4     6   183     5   183     2   194 0.92 KDPG and KHG aldolase
TMP-TENI             PF02581.12   180 sp|Q6BF16|DGOA_ECOLI -            205   6.5e-05   22.1   0.1   2   2   4.3e-08   0.00032   19.8   0.1   134   175   131   174    87   179 0.87 Thiamine monophosphate synthase/TENI
MR_MLE_N             PF02746.11   117 sp|Q6BF17|DGOD_ECOLI -            382     4e-31  107.4   0.0   1   1   1.5e-34   7.5e-31  106.5   0.0    28   117    15   107     4   107 0.97 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
MR_MLE_C             PF13378.1    111 sp|Q6BF17|DGOD_ECOLI -            382   3.3e-29  101.1   0.0   1   1   1.3e-32   6.4e-29  100.1   0.0     1   111   234   351   234   351 0.88 Enolase C-terminal domain-like
MR_MLE               PF01188.16    67 sp|Q6BF17|DGOD_ECOLI -            382     3e-11   43.7   0.0   1   1   1.3e-14   6.2e-11   42.6   0.0     2    67   167   234   166   234 0.95 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
DGOK                 PF05035.7    287 sp|P31459|DGOK_ECOLI -            292   8.9e-98  326.5   0.2   1   1  6.8e-102     1e-97  326.3   0.2     1   286     9   287     9   288 0.98 2-keto-3-deoxy-galactonokinase
MFS_1                PF07690.11   352 sp|P0AA76|DGOT_ECOLI -            430   6.7e-64  215.8  73.8   1   2     4e-59     2e-55  187.9  36.2     1   352    21   389    21   389 0.88 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P0AA76|DGOT_ECOLI -            430   6.7e-64  215.8  73.8   2   2   1.1e-14   5.5e-11   41.7  29.6     2   170   246   421   245   429 0.85 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P0AA76|DGOT_ECOLI -            430   7.1e-11   41.3  29.4   1   1   2.2e-14   1.1e-10   40.7  29.4    43   430    44   416    13   427 0.75 Sugar (and other) transporter
SPC12                PF06645.8     77 sp|P0AA76|DGOT_ECOLI -            430    0.0077   16.0   0.0   1   2   1.6e-06    0.0077   16.0   0.0    17    72    83   138    75   143 0.91 Microsomal signal peptidase 12 kDa subunit (SPC12)
HD                   PF01966.17   122 sp|P15723|DGTP_ECOLI -            505   5.7e-11   42.4   0.1   1   2   2.4e-14   1.8e-10   40.8   0.0     1    64    66   146    66   183 0.88 HD domain
HD_assoc             PF13286.1     92 sp|P15723|DGTP_ECOLI -            505   3.4e-10   40.0   1.3   2   3     7e-07    0.0052   17.0   0.0     7    47   375   415   370   443 0.86 Phosphohydrolase-associated domain
HD_assoc             PF13286.1     92 sp|P15723|DGTP_ECOLI -            505   3.4e-10   40.0   1.3   3   3   6.9e-08   0.00051   20.2   0.1    70    92   477   499   441   499 0.86 Phosphohydrolase-associated domain
EIIA-man             PF03610.11   116 sp|P37349|DHAM_ECOLI -            472   2.4e-26   92.0   2.8   1   1   1.3e-29   4.9e-26   91.0   2.8     2   116     4   121     3   121 0.98 PTS system fructose IIA component
PEP-utilisers_N      PF05524.8    123 sp|P37349|DHAM_ECOLI -            472   3.5e-23   81.7   0.5   2   2   9.5e-27   3.5e-23   81.7   0.5    12   122   257   368   256   369 0.96 PEP-utilising enzyme, N-terminal
PTS-HPr              PF00381.14    84 sp|P37349|DHAM_ECOLI -            472   4.4e-20   71.3   0.6   1   2     4e-23   1.5e-19   69.6   0.0     5    83   159   237   155   238 0.96 PTS HPr component phosphorylation site
PEP-utilizers        PF00391.18    81 sp|P37349|DHAM_ECOLI -            472   1.2e-16   60.0   0.0   1   1   7.6e-20   2.8e-16   58.8   0.0     4    79   389   464   386   466 0.92 PEP-utilising enzyme, mobile domain
Semialdhyde_dhC      PF02774.13   184 sp|P0A9Q9|DHAS_ECOLI -            367     5e-61  205.7   0.0   1   1   8.4e-65   6.2e-61  205.4   0.0     1   184   144   353   144   353 0.97 Semialdehyde dehydrogenase, dimerisation domain
Semialdhyde_dh       PF01118.19   121 sp|P0A9Q9|DHAS_ECOLI -            367   1.5e-23   83.4   0.0   1   1   3.6e-27   2.7e-23   82.5   0.0     1   119     3   120     3   122 0.90 Semialdehyde dehydrogenase, NAD binding domain
ELFV_dehydrog        PF00208.16   244 sp|P00370|DHE4_ECOLI -            447   3.3e-88  295.3   2.0   1   1   1.8e-91   5.3e-88  294.7   2.0     1   244   202   445   202   445 0.96 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ELFV_dehydrog_N      PF02812.13   131 sp|P00370|DHE4_ECOLI -            447     9e-47  157.9   0.0   1   1   8.7e-50   2.6e-46  156.4   0.0     1   130    57   186    57   187 0.99 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
2-Hacid_dh_C         PF02826.14   178 sp|P00370|DHE4_ECOLI -            447     0.015   14.4   0.1   1   1   9.1e-06     0.027   13.6   0.1    29    89   225   283   216   286 0.82 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
NAD_binding_7        PF13241.1    103 sp|P00370|DHE4_ECOLI -            447     0.022   14.9   0.0   1   1   1.4e-05      0.04   14.1   0.0     5    50   230   283   228   342 0.69 Putative NAD(P)-binding
AlaDh_PNT_C          PF01262.16   168 sp|P00370|DHE4_ECOLI -            447     0.087   12.3   0.1   1   1     8e-05      0.24   10.9   0.1    19    54   231   266   219   310 0.70 Alanine dehydrogenase/PNT, C-terminal domain
PQQ                  PF01011.16    38 sp|P15877|DHG_ECOLI  -            796   2.3e-55  181.4   7.8   2   8   1.7e-11   8.4e-08   31.3   0.0     2    34   226   258   225   262 0.88 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|P15877|DHG_ECOLI  -            796   2.3e-55  181.4   7.8   3   8   2.2e-07    0.0011   18.4   0.0     2    35   289   322   288   325 0.86 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|P15877|DHG_ECOLI  -            796   2.3e-55  181.4   7.8   4   8   7.3e-09   3.6e-05   23.0   0.0     8    34   361   387   353   391 0.85 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|P15877|DHG_ECOLI  -            796   2.3e-55  181.4   7.8   5   8   1.2e-11   6.1e-08   31.8   0.0     8    37   439   468   436   469 0.91 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|P15877|DHG_ECOLI  -            796   2.3e-55  181.4   7.8   6   8   2.1e-06      0.01   15.3   0.0     2    35   487   520   486   523 0.91 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|P15877|DHG_ECOLI  -            796   2.3e-55  181.4   7.8   7   8   2.7e-11   1.3e-07   30.7   0.0     3    36   662   696   660   698 0.91 PQQ enzyme repeat
PQQ                  PF01011.16    38 sp|P15877|DHG_ECOLI  -            796   2.3e-55  181.4   7.8   8   8   5.8e-10   2.9e-06   26.5   0.0     2    38   722   759   721   759 0.93 PQQ enzyme repeat
PQQ_2                PF13360.1    238 sp|P15877|DHG_ECOLI  -            796     2e-28   99.4   0.0   1   3   3.8e-16   1.9e-12   47.1   0.0    14   148   195   379   181   400 0.78 PQQ-like domain
PQQ_2                PF13360.1    238 sp|P15877|DHG_ECOLI  -            796     2e-28   99.4   0.0   2   3   2.1e-07    0.0011   18.5   0.0    86   145   441   508   395   512 0.82 PQQ-like domain
PQQ_2                PF13360.1    238 sp|P15877|DHG_ECOLI  -            796     2e-28   99.4   0.0   3   3   8.9e-11   4.4e-07   29.6   0.0     4    86   671   774   669   780 0.77 PQQ-like domain
Pyr_redox_2          PF07992.9    201 sp|P00393|DHNA_ECOLI -            434   2.1e-33  115.9   0.0   1   1   4.1e-36   4.7e-33  114.7   0.0     1   198     7   318     7   321 0.91 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox            PF00070.22    80 sp|P00393|DHNA_ECOLI -            434   3.4e-19   69.0   3.9   1   2   1.4e-07   0.00016   21.9   0.1     1    36     7    48     7   102 0.87 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox            PF00070.22    80 sp|P00393|DHNA_ECOLI -            434   3.4e-19   69.0   3.9   2   2   2.8e-15   3.2e-12   46.6   0.6     1    68   172   254   172   264 0.91 Pyridine nucleotide-disulphide oxidoreductase
DAO                  PF01266.19   358 sp|P00393|DHNA_ECOLI -            434   2.4e-11   43.1  10.2   1   4   0.00068      0.78    8.5   0.7     1    31     7    42     7    48 0.90 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|P00393|DHNA_ECOLI -            434   2.4e-11   43.1  10.2   2   4   0.00057      0.65    8.8   0.0   142   206    57   129    45   136 0.78 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|P00393|DHNA_ECOLI -            434   2.4e-11   43.1  10.2   4   4   2.8e-09   3.2e-06   26.3   0.0   147   236   226   308   223   349 0.81 FAD dependent oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P00393|DHNA_ECOLI -            434   2.6e-10   40.7   0.0   1   2   3.3e-08   3.8e-05   23.8   0.1     2   194    10   197     9   202 0.56 Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_9        PF13454.1    156 sp|P00393|DHNA_ECOLI -            434     4e-05   23.4   2.8   1   4   3.2e-05     0.037   13.8   0.0     1    36     9    44     9    53 0.90 FAD-NAD(P)-binding
Lycopene_cycl        PF05834.7    374 sp|P00393|DHNA_ECOLI -            434   0.00011   21.2   0.9   1   4   8.6e-05     0.098   11.5   0.0     2    39     8    48     7    99 0.91 Lycopene cyclase protein
HI0933_like          PF03486.9    409 sp|P00393|DHNA_ECOLI -            434   0.00012   20.6   0.2   1   4   0.00024      0.27    9.6   0.1     2    36     7    46     6    51 0.83 HI0933-like protein
Trp_halogenase       PF04820.9    454 sp|P00393|DHNA_ECOLI -            434    0.0037   15.9   1.6   1   3   0.00015      0.17   10.4   0.1     1    33     7    41     7    45 0.87 Tryptophan halogenase
NAD_binding_8        PF13450.1     68 sp|P00393|DHNA_ECOLI -            434    0.0038   17.2   1.5   1   2    0.0002      0.23   11.4   0.1     1    29    10    43    10    46 0.77 NAD(P)-binding Rossmann-like domain
DUF4147              PF13660.1    239 sp|P00393|DHNA_ECOLI -            434     0.075   12.1   0.2   1   2   0.00058      0.66    9.0   0.0    39    80     4    45     1    64 0.86 Domain of unknown function (DUF4147)
Pterin_bind          PF00809.17   210 sp|P0AC13|DHPS_ECOLI -            282   1.4e-76  256.5   0.0   1   1   4.2e-80   2.1e-76  255.9   0.0     1   210    20   225    20   225 0.99 Pterin binding enzyme
TSNR_N               PF04705.7    115 sp|P0AC13|DHPS_ECOLI -            282     0.052   13.3   0.0   1   1   2.6e-05      0.13   12.0   0.0     9    65    11    69     5    90 0.82 Thiostrepton-resistance methylase, N terminus
Pox_I3               PF04661.7    263 sp|P0AC13|DHPS_ECOLI -            282      0.12   11.0   0.0   1   1   3.7e-05      0.18   10.5   0.0   193   245    32    84    17    99 0.83 Poxvirus I3 ssDNA-binding protein
Sdh_cyt              PF01127.17   121 sp|P69054|DHSC_ECOLI -            129   4.3e-30  104.0   5.0   1   1   9.8e-34   4.9e-30  103.8   5.0     2   120     6   123     5   124 0.90 Succinate dehydrogenase/Fumarate reductase transmembrane subunit
DUF4149              PF13664.1    101 sp|P69054|DHSC_ECOLI -            129      0.23   11.5   6.1   2   2   7.3e-05      0.36   10.9   5.7     7    84    41   124    32   129 0.68 Domain of unknown function (DUF4149)
PgaD                 PF13994.1    138 sp|P69054|DHSC_ECOLI -            129       4.4    6.8   9.3   3   3    0.0001      0.49    9.8   2.3    17    79    67   127    59   129 0.65 PgaD-like protein
SIS_2                PF13580.1    138 sp|P66817|DIAA_ECOLI -            196   1.3e-31  109.1   1.0   1   1   3.3e-35   1.6e-31  108.8   1.0     3   138    10   144     8   144 0.95 SIS domain
SIS                  PF01380.17   131 sp|P66817|DIAA_ECOLI -            196   6.8e-07   28.9   0.3   2   2   1.1e-09   5.2e-06   26.0   0.0    49   105   105   164    77   182 0.82 SIS domain
HobA                 PF12163.3    180 sp|P66817|DIAA_ECOLI -            196      0.18   11.0   0.0   1   1   5.1e-05      0.25   10.5   0.0    34    88    32    87    21   103 0.79 DNA replication regulator
MatE                 PF01554.13   162 sp|P28303|DINF_ECOLI -            459   6.1e-39  133.2  30.1   1   3   1.4e-34   1.1e-30  106.4   8.3     1   161    35   195    35   196 0.99 MatE
MatE                 PF01554.13   162 sp|P28303|DINF_ECOLI -            459   6.1e-39  133.2  30.1   3   3   7.2e-13   5.3e-09   35.8   9.7     2   142   259   399   259   421 0.92 MatE
Polysacc_synt_C      PF14667.1    146 sp|P28303|DINF_ECOLI -            459   2.9e-06   27.1  16.1   2   4     4e-10   2.9e-06   27.1  16.1     8    86   156   236   150   309 0.87 Polysaccharide biosynthesis C-terminal domain
Helicase_C_2         PF13307.1    167 sp|P27296|DING_ECOLI -            716   6.9e-26   91.1   0.0   1   1   3.7e-29   1.1e-25   90.5   0.0     8   165   533   688   526   690 0.93 Helicase C-terminal domain
DEAD                 PF00270.24   169 sp|P27296|DING_ECOLI -            716   2.3e-09   36.9   0.1   1   3   1.2e-09   3.6e-06   26.5   0.0    12    74    43   108    29   125 0.72 DEAD/DEAH box helicase
DEAD_2               PF06733.10   174 sp|P27296|DING_ECOLI -            716   1.3e-08   34.4   0.0   1   1   7.7e-12   2.3e-08   33.6   0.0   103   167   200   263   150   269 0.87 DEAD_2
ResIII               PF04851.10   184 sp|P27296|DING_ECOLI -            716   1.6e-05   24.8   0.0   1   2   1.4e-07   0.00041   20.2   0.0     3    57    26    82    24   105 0.81 Type III restriction enzyme, res subunit
DinI                 PF06183.8     65 sp|P0ABR1|DINI_ECOLI -             81   1.9e-29  101.4   0.1   2   2   1.8e-33   2.7e-29  100.9   0.0     1    65    13    79    13    79 0.98 DinI-like family
RelB                 PF04221.7     83 sp|Q47150|DINJ_ECOLI -             86   9.1e-32  108.6   0.2   1   1   6.8e-36     1e-31  108.5   0.2     1    83     4    84     4    84 0.98 RelB antitoxin
Aldo_ket_red         PF00248.16   283 sp|Q46857|DKGA_ECOLI -            275   1.2e-56  191.5   0.0   1   1     2e-60   1.5e-56  191.3   0.0     2   282    18   261    17   262 0.96 Aldo/keto reductase family
Ribosomal_S5         PF00333.15    67 sp|Q46857|DKGA_ECOLI -            275     0.099   12.4   0.0   1   1   3.5e-05      0.26   11.0   0.0    35    62    16    45    10    49 0.76 Ribosomal protein S5, N-terminal domain
Aldo_ket_red         PF00248.16   283 sp|P30863|DKGB_ECOLI -            267   6.9e-57  192.4   0.6   1   1   5.9e-61   8.8e-57  192.0   0.6     2   281     6   250     5   251 0.95 Aldo/keto reductase family
zf-dskA_traR         PF01258.12    36 sp|P0ABS1|DKSA_ECOLI -            151   6.2e-10   38.6   3.6   1   1     3e-13   1.1e-09   37.8   3.6     2    35   110   143   109   147 0.87 Prokaryotic dksA/traR C4-type zinc finger
FAM165               PF14981.1     51 sp|P0ABS1|DKSA_ECOLI -            151     0.016   14.6   0.4   1   2   0.00016      0.59    9.6   0.0    22    43    15    36     7    45 0.79 FAM165 family
Pyr_redox_2          PF07992.9    201 sp|P0A9P0|DLDH_ECOLI -            474   1.9e-44  151.9   1.7   1   1   3.6e-47   3.1e-44  151.2   1.7     1   199     8   317     8   319 0.94 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim        PF02852.17   110 sp|P0A9P0|DLDH_ECOLI -            474   9.7e-35  118.9   0.0   1   1   2.6e-37   2.3e-34  117.7   0.0     1   109   347   455   347   456 0.98 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Pyr_redox            PF00070.22    80 sp|P0A9P0|DLDH_ECOLI -            474   2.9e-15   56.4   0.8   2   2   3.4e-18   2.9e-15   56.4   0.8     1    78   177   253   177   256 0.94 Pyridine nucleotide-disulphide oxidoreductase
GIDA                 PF01134.17   392 sp|P0A9P0|DLDH_ECOLI -            474   1.9e-08   33.6   1.1   1   2   1.5e-10   1.3e-07   30.8   0.6     1    60     8    70     8    83 0.91 Glucose inhibited division protein A
FAD_oxidored         PF12831.2    428 sp|P0A9P0|DLDH_ECOLI -            474     3e-08   33.1   0.9   1   1   7.5e-11   6.5e-08   32.0   0.9     1    38     8    45     8    63 0.94 FAD dependent oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P0A9P0|DLDH_ECOLI -            474   1.6e-07   31.5   0.5   1   3   1.9e-07   0.00017   21.7   0.2     1   176    10   184    10   205 0.71 Pyridine nucleotide-disulphide oxidoreductase
FAD_binding_2        PF00890.19   417 sp|P0A9P0|DLDH_ECOLI -            474   4.1e-06   25.9   0.7   1   2   5.2e-08   4.5e-05   22.4   0.2     2    36     9    43     8    47 0.91 FAD binding domain
HI0933_like          PF03486.9    409 sp|P0A9P0|DLDH_ECOLI -            474   1.1e-05   24.1   0.4   1   2   1.5e-06    0.0013   17.2   0.1     2    36     8    42     7    49 0.94 HI0933-like protein
Thi4                 PF01946.12   230 sp|P0A9P0|DLDH_ECOLI -            474   4.5e-05   22.6   0.1   1   1   1.2e-07   0.00011   21.4   0.1    16    63     5    52     1    84 0.80 Thi4 family
NAD_binding_8        PF13450.1     68 sp|P0A9P0|DLDH_ECOLI -            474   0.00013   21.9   5.5   1   2   3.2e-07   0.00028   20.8   0.4     1    36    11    46    11    49 0.95 NAD(P)-binding Rossmann-like domain
FAD_binding_3        PF01494.14   356 sp|P0A9P0|DLDH_ECOLI -            474   0.00014   21.0   0.3   1   2   8.3e-07   0.00072   18.6   0.1     1    35     6    40     6    42 0.96 FAD binding domain
DAO                  PF01266.19   358 sp|P0A9P0|DLDH_ECOLI -            474      0.01   14.7   6.8   1   3     3e-05     0.026   13.4   0.5     2    32     9    40     8    45 0.90 FAD dependent oxidoreductase
FMO-like             PF00743.14   532 sp|P0A9P0|DLDH_ECOLI -            474      0.13   10.4   0.1   1   1   0.00026      0.23    9.6   0.1     3    39     8    44     6    48 0.94 Flavin-binding monooxygenase-like
Ldh_2                PF02615.9    335 sp|P37672|DLGD_ECOLI -            332    8e-144  478.4   0.0   1   1    6e-148  8.9e-144  478.3   0.0     1   334     1   331     1   332 0.99 Malate/L-lactate dehydrogenase
DLH                  PF01738.13   218 sp|P56262|DLHH_ECOLI -            271   1.3e-76  256.6   0.0   1   1     1e-79   1.5e-76  256.4   0.0     1   217    42   265    42   266 0.99 Dienelactone hydrolase family
Abhydrolase_5        PF12695.2    145 sp|P56262|DLHH_ECOLI -            271   1.8e-15   56.9   0.1   1   1   1.7e-18   2.6e-15   56.4   0.1     2   145    59   237    58   237 0.75 Alpha/beta hydrolase family
Abhydrolase_6        PF12697.2    228 sp|P56262|DLHH_ECOLI -            271   4.4e-12   46.3   2.0   1   2     3e-07   0.00045   20.1   1.1     8    95    66   168    59   175 0.73 Alpha/beta hydrolase family
Abhydrolase_6        PF12697.2    228 sp|P56262|DLHH_ECOLI -            271   4.4e-12   46.3   2.0   2   2   5.4e-09     8e-06   25.9   0.0   163   221   180   242   164   249 0.75 Alpha/beta hydrolase family
BAAT_C               PF08840.6    213 sp|P56262|DLHH_ECOLI -            271   4.9e-09   36.2   0.1   2   2   5.5e-09   8.2e-06   25.6   0.3   109   177   186   252   173   268 0.80 BAAT / Acyl-CoA thioester hydrolase C terminal
Peptidase_S9         PF00326.16   213 sp|P56262|DLHH_ECOLI -            271   9.8e-07   28.2   0.0   2   2   3.1e-08   4.6e-05   22.7   0.0   136   210   184   266   174   269 0.79 Prolyl oligopeptidase family
Abhydrolase_2        PF02230.11   216 sp|P56262|DLHH_ECOLI -            271   0.00019   20.9   0.0   1   1     2e-07    0.0003   20.2   0.0   101   200   135   238   122   242 0.84 Phospholipase/Carboxylesterase
Abhydrolase_1        PF00561.15   230 sp|P56262|DLHH_ECOLI -            271   0.00055   19.5   0.1   1   2   7.1e-06      0.01   15.3   0.0    44    72   139   166   130   171 0.83 alpha/beta hydrolase fold
Abhydrolase_3        PF07859.8    211 sp|P56262|DLHH_ECOLI -            271     0.067   12.7   0.1   2   2   0.00046      0.68    9.4   0.0   182   209   211   238   158   240 0.78 alpha/beta hydrolase fold
Chlorophyllase2      PF12740.2    260 sp|P56262|DLHH_ECOLI -            271     0.083   11.7   0.0   1   1   9.1e-05      0.14   11.0   0.0    11   110    49   144    42   166 0.78 Chlorophyllase enzyme
Abhydrolase_4        PF08386.5    103 sp|P56262|DLHH_ECOLI -            271     0.091   12.6   0.0   1   1   0.00011      0.17   11.8   0.0    21    76   181   239   160   250 0.79 TAP-like protein
MethyltransfD12      PF02086.10   260 sp|P0AEE8|DMA_ECOLI  -            278   1.3e-75  254.2   0.2   1   1   9.6e-80   1.4e-75  254.1   0.2     1   260    10   251    10   251 0.97 D12 class N6 adenine-specific DNA methyltransferase
Iso_dh               PF00180.15   348 sp|P76251|DMLA_ECOLI -            361   9.6e-87  291.1   0.0   1   1     8e-91   1.2e-86  290.8   0.0     1   347     6   354     6   355 0.93 Isocitrate/isopropylmalate dehydrogenase
Molybdopterin        PF00384.17   432 sp|P18775|DMSA_ECOLI -            814  1.1e-113  380.3   0.0   1   1  2.6e-117  1.3e-113  380.0   0.0     1   432   119   576   119   576 0.96 Molybdopterin oxidoreductase
Molydop_binding      PF01568.16   110 sp|P18775|DMSA_ECOLI -            814   4.3e-29  100.5   0.0   1   1   2.1e-32     1e-28   99.3   0.0     1   108   695   806   695   808 0.97 Molydopterin dinucleotide binding domain
Molybdop_Fe4S4       PF04879.11    55 sp|P18775|DMSA_ECOLI -            814   9.3e-18   63.7   0.9   1   1   3.4e-21   1.7e-17   62.9   0.9     1    55    56   116    56   116 0.98 Molybdopterin oxidoreductase Fe4S4 domain
Nitrate_red_del      PF02613.10   136 sp|P69853|DMSD_ECOLI -            204     4e-31  107.6   1.1   1   1   3.7e-35   5.5e-31  107.2   1.1     7   134    41   164    19   166 0.93 Nitrate reductase delta subunit
Bac_DnaA             PF00308.13   219 sp|P03004|DNAA_ECOLI -            467  2.2e-100  334.8   0.2   1   1  3.1e-103  3.3e-100  334.2   0.2     2   218   133   349   132   350 0.99 Bacterial dnaA  protein
Bac_DnaA_C           PF08299.6     70 sp|P03004|DNAA_ECOLI -            467   3.9e-35  119.5   0.1   1   1     1e-37   1.1e-34  118.1   0.1     1    70   375   444   375   444 0.99 Bacterial dnaA protein helix-turn-helix
DnaA_N               PF11638.3     65 sp|P03004|DNAA_ECOLI -            467   2.2e-20   71.9   0.1   1   1   5.4e-23   5.7e-20   70.6   0.1     2    63     4    63     3    65 0.92 DnaA N-terminal domain
IstB_IS21            PF01695.12   178 sp|P03004|DNAA_ECOLI -            467   7.6e-13   48.2   0.0   1   1   1.3e-15   1.4e-12   47.4   0.0    50   151   168   272   147   280 0.89 IstB-like ATP binding protein
AAA                  PF00004.24   132 sp|P03004|DNAA_ECOLI -            467   2.1e-06   27.9   0.0   1   1   1.1e-08   1.2e-05   25.5   0.0     2   111   169   270   168   290 0.78 ATPase family associated with various cellular activities (AAA)
AAA_14               PF13173.1    128 sp|P03004|DNAA_ECOLI -            467     6e-05   22.9   0.2   1   2   2.4e-06    0.0026   17.6   0.0     3   108   166   280   164   292 0.72 AAA domain
Kinesin              PF00225.18   335 sp|P03004|DNAA_ECOLI -            467   0.00023   19.9   0.0   1   1   5.5e-07   0.00058   18.6   0.0    35   147   128   398    98   429 0.72 Kinesin motor domain
Arch_ATPase          PF01637.13   234 sp|P03004|DNAA_ECOLI -            467    0.0003   20.5   0.6   1   2   1.3e-06    0.0014   18.3   0.2    18   125   163   269   160   286 0.60 Archaeal ATPase
AAA_16               PF13191.1    185 sp|P03004|DNAA_ECOLI -            467     0.002   18.1   1.3   1   1   2.7e-05     0.029   14.3   0.5    17   162   158   382   143   422 0.56 AAA ATPase domain
NACHT                PF05729.7    166 sp|P03004|DNAA_ECOLI -            467    0.0093   15.6   0.0   1   1   2.2e-05     0.023   14.3   0.0     2    63   167   238   166   275 0.69 NACHT domain
AAA_19               PF13245.1     76 sp|P03004|DNAA_ECOLI -            467      0.02   14.6   0.1   1   1   0.00011      0.12   12.1   0.0    10    62   166   214   151   231 0.79 Part of AAA domain
AFG1_ATPase          PF03969.11   362 sp|P03004|DNAA_ECOLI -            467     0.026   13.3   0.3   1   1   7.6e-05      0.08   11.7   0.3    63   137   166   238   136   286 0.60 AFG1-like ATPase
RNA_helicase         PF00910.17   107 sp|P03004|DNAA_ECOLI -            467       0.1   12.7   0.0   1   1   0.00037       0.4   10.8   0.0     1    68   168   248   168   266 0.67 RNA helicase
DnaB_C               PF03796.10   259 sp|P0ACB0|DNAB_ECOLI -            471  6.3e-109  362.8   0.2   1   1  4.2e-112  8.9e-109  362.3   0.2     1   257   206   463   206   465 0.98 DnaB-like helicase C terminal domain
DnaB                 PF00772.16   103 sp|P0ACB0|DNAB_ECOLI -            471   9.4e-38  128.2   0.0   1   1   9.8e-41   2.1e-37  127.1   0.0     1   103    26   128    26   128 0.99 DnaB-like helicase N terminal domain
AAA_25               PF13481.1    194 sp|P0ACB0|DNAB_ECOLI -            471   1.2e-13   50.9   0.0   1   1   8.8e-17   1.9e-13   50.2   0.0    29   190   220   386   179   390 0.84 AAA domain
KaiC                 PF06745.8    227 sp|P0ACB0|DNAB_ECOLI -            471    0.0013   17.8   0.0   1   1   1.4e-06     0.003   16.7   0.0     3    66   209   271   204   293 0.84 KaiC
AAA_33               PF13671.1    143 sp|P0ACB0|DNAB_ECOLI -            471    0.0031   17.3   0.1   1   1   2.4e-05      0.05   13.4   0.1     2    96   227   335   226   412 0.79 AAA domain
AAA_31               PF13614.1    157 sp|P0ACB0|DNAB_ECOLI -            471     0.024   14.5   0.0   1   1   4.7e-05     0.099   12.5   0.0     5    42   228   266   226   280 0.89 AAA domain
DASH_Dad1            PF08649.5     58 sp|P0ACB0|DNAB_ECOLI -            471      0.18   11.5   0.4   1   1   0.00043      0.92    9.2   0.4     7    34   357   391   354   394 0.77 DASH complex subunit Dad1
IstB_IS21            PF01695.12   178 sp|P0AEF0|DNAC_ECOLI -            245   9.6e-17   60.9   0.0   1   1   2.2e-19   1.3e-16   60.5   0.0    43   163    95   218    48   223 0.80 IstB-like ATP binding protein
Bac_DnaA             PF00308.13   219 sp|P0AEF0|DNAC_ECOLI -            245   2.5e-07   30.5   0.0   1   1   5.7e-10   3.3e-07   30.1   0.0     2   124    66   189    65   230 0.78 Bacterial dnaA  protein
AAA                  PF00004.24   132 sp|P0AEF0|DNAC_ECOLI -            245   1.4e-06   28.5   0.1   1   1   4.2e-09   2.4e-06   27.7   0.1     2    98   103   196   102   225 0.69 ATPase family associated with various cellular activities (AAA)
ArsA_ATPase          PF02374.10   305 sp|P0AEF0|DNAC_ECOLI -            245     3e-06   26.5   0.0   1   1   9.4e-09   5.4e-06   25.6   0.0     4    81   102   182    99   231 0.73 Anion-transporting ATPase
AAA_19               PF13245.1     76 sp|P0AEF0|DNAC_ECOLI -            245    0.0004   20.0   0.0   1   1   1.4e-06   0.00079   19.1   0.0    16    49   105   134    92   138 0.89 Part of AAA domain
RNA_helicase         PF00910.17   107 sp|P0AEF0|DNAC_ECOLI -            245   0.00083   19.5   0.1   1   1   7.4e-06    0.0042   17.2   0.1     2    86   103   200   102   212 0.80 RNA helicase
ResIII               PF04851.10   184 sp|P0AEF0|DNAC_ECOLI -            245    0.0015   18.4   0.0   1   1   4.7e-06    0.0027   17.5   0.0     7    76    80   152    77   207 0.76 Type III restriction enzyme, res subunit
PIF1                 PF05970.9    364 sp|P0AEF0|DNAC_ECOLI -            245    0.0021   17.0   0.2   1   2   0.00038      0.22   10.4   0.0    23    61   100   138    79   145 0.77 PIF1-like helicase
CbiA                 PF01656.18   195 sp|P0AEF0|DNAC_ECOLI -            245    0.0034   16.8   0.0   1   1   8.8e-06     0.005   16.2   0.0     3    74   103   191   101   221 0.71 CobQ/CobB/MinD/ParA nucleotide binding domain
RuvB_N               PF05496.7    234 sp|P0AEF0|DNAC_ECOLI -            245    0.0056   15.7   0.1   1   1   1.9e-05     0.011   14.8   0.1    50   111    99   172    61   192 0.74 Holliday junction DNA helicase ruvB N-terminus
AAA_10               PF12846.2    304 sp|P0AEF0|DNAC_ECOLI -            245    0.0084   15.5   0.0   1   1   2.1e-05     0.012   15.0   0.0     3    47   101   148   100   212 0.87 AAA-like domain
PhoH                 PF02562.11   205 sp|P0AEF0|DNAC_ECOLI -            245      0.01   15.0   0.0   1   1     3e-05     0.017   14.3   0.0    10    65    89   145    82   189 0.81 PhoH-like protein
AAA_11               PF13086.1    236 sp|P0AEF0|DNAC_ECOLI -            245     0.018   14.6   0.1   1   2   0.00073      0.42   10.1   0.0    18    58    93   132    78   141 0.72 AAA domain
AAA_33               PF13671.1    143 sp|P0AEF0|DNAC_ECOLI -            245     0.021   14.7   0.0   1   1   6.2e-05     0.035   13.9   0.0     3    55   103   160   102   240 0.75 AAA domain
DEAD                 PF00270.24   169 sp|P0AEF0|DNAC_ECOLI -            245     0.035   13.6   0.2   1   1    0.0001     0.059   12.8   0.2    96   153   128   197    82   212 0.71 DEAD/DEAH box helicase
Sigma54_activat      PF00158.21   168 sp|P0AEF0|DNAC_ECOLI -            245     0.037   13.5   0.0   1   1   0.00013     0.076   12.4   0.0     4    62    81   139    78   146 0.83 Sigma-54 interaction domain
ArgK                 PF03308.11   267 sp|P0AEF0|DNAC_ECOLI -            245     0.038   12.7   0.0   1   1   0.00013     0.073   11.8   0.0    27    65    97   135    76   144 0.85 ArgK protein
AAA_16               PF13191.1    185 sp|P0AEF0|DNAC_ECOLI -            245     0.041   13.8   0.0   1   1    0.0001      0.06   13.3   0.0    21    83    96   161    78   217 0.76 AAA ATPase domain
KTI12                PF08433.5    270 sp|P0AEF0|DNAC_ECOLI -            245     0.046   12.9   0.0   1   1   0.00021      0.12   11.5   0.0     5    52   103   151   101   164 0.82 Chromatin associated protein KTI12
Torsin               PF06309.6    127 sp|P0AEF0|DNAC_ECOLI -            245     0.053   13.4   0.0   1   1   0.00016     0.093   12.6   0.0    57    83   103   129    70   152 0.87 Torsin
AAA_30               PF13604.1    196 sp|P0AEF0|DNAC_ECOLI -            245     0.062   12.8   0.1   1   1     0.001      0.59    9.6   0.1    21   113   102   182    89   191 0.76 AAA domain
AAA_17               PF13207.1    121 sp|P0AEF0|DNAC_ECOLI -            245     0.064   14.0   0.0   1   1   0.00024      0.14   13.0   0.0     3    77   103   170   102   220 0.58 AAA domain
AAA_18               PF13238.1    129 sp|P0AEF0|DNAC_ECOLI -            245     0.064   13.5   0.0   1   1   0.00028      0.16   12.2   0.0     2    88   103   194   103   224 0.62 AAA domain
Mg_chelatase         PF01078.16   207 sp|P0AEF0|DNAC_ECOLI -            245       0.1   11.7   0.0   1   1   0.00035       0.2   10.7   0.0    24    71   101   149    85   162 0.83 Magnesium chelatase, subunit ChlI
Toprim_N             PF08275.6    128 sp|P0ABS5|DNAG_ECOLI -            581   1.7e-43  147.6   0.0   1   1   1.6e-46   2.7e-43  146.9   0.0     1   127   126   251   126   252 0.98 DNA primase catalytic core, N-terminal domain
zf-CHC2              PF01807.15    98 sp|P0ABS5|DNAG_ECOLI -            581     2e-40  136.2   0.1   1   1   2.2e-43   3.7e-40  135.4   0.1     3    96     7   100     5   102 0.96 CHC2 zinc finger
DnaG_DnaB_bind       PF08278.6    127 sp|P0ABS5|DNAG_ECOLI -            581   2.4e-39  134.4   1.3   1   1   3.5e-42   5.7e-39  133.2   1.3     1   127   450   575   450   575 0.99 DNA primase DnaG DnaB-binding
DnaB_bind            PF10410.4     59 sp|P0ABS5|DNAG_ECOLI -            581   7.2e-18   64.3   0.0   1   1   1.2e-20     2e-17   62.9   0.0     1    58   368   425   368   426 0.97 DnaB-helicase binding domain of primase
Toprim_4             PF13662.1     81 sp|P0ABS5|DNAG_ECOLI -            581   6.1e-16   58.2   0.0   1   1   8.6e-19   1.4e-15   57.0   0.0     2    70   260   325   259   335 0.90 Toprim domain
Toprim_2             PF13155.1     96 sp|P0ABS5|DNAG_ECOLI -            581   4.4e-12   46.1   0.0   1   1   6.2e-15     1e-11   44.9   0.0     2    94   263   348   262   350 0.86 Toprim-like
Toprim               PF01751.17   100 sp|P0ABS5|DNAG_ECOLI -            581   1.6e-10   40.8   0.0   1   1     2e-13   3.3e-10   39.8   0.0     2    90   261   331   260   339 0.93 Toprim domain
Toprim_3             PF13362.1     96 sp|P0ABS5|DNAG_ECOLI -            581   9.9e-05   22.5   0.0   1   1   1.1e-07   0.00018   21.6   0.0     2    96   261   356   260   356 0.76 Toprim domain
CTDII                PF01556.13    81 sp|P08622|DNAJ_ECOLI -            376   9.5e-34  115.1   0.1   1   3   5.2e-05      0.11   12.4   0.0     1    55   116   174   116   193 0.79 DnaJ C terminal domain
CTDII                PF01556.13    81 sp|P08622|DNAJ_ECOLI -            376   9.5e-34  115.1   0.1   2   3   1.7e-09   3.6e-06   26.7   0.0    27    69   210   251   207   258 0.89 DnaJ C terminal domain
CTDII                PF01556.13    81 sp|P08622|DNAJ_ECOLI -            376   9.5e-34  115.1   0.1   3   3   9.8e-24   2.1e-20   72.4   0.0     1    81   262   340   262   340 0.95 DnaJ C terminal domain
DnaJ                 PF00226.26    64 sp|P08622|DNAJ_ECOLI -            376   1.6e-28   98.1   4.0   1   1   1.2e-31   2.6e-28   97.5   4.0     1    64     5    67     5    67 0.99 DnaJ domain
DnaJ_CXXCXGXG        PF00684.14    66 sp|P08622|DNAJ_ECOLI -            376   9.1e-16   57.6  16.9   1   1   7.6e-19   1.6e-15   56.8  16.9     1    66   144   204   144   204 0.97 DnaJ central domain
HSP70                PF00012.15   602 sp|P0A6Y8|DNAK_ECOLI -            638  4.1e-270  896.8  15.9   1   1  2.3e-273  4.9e-270  896.6  15.9     1   600     4   602     4   604 0.99 Hsp70 protein
MreB_Mbl             PF06723.8    327 sp|P0A6Y8|DNAK_ECOLI -            638   8.5e-15   54.1   2.0   2   2   5.3e-16   1.1e-12   47.1   0.5    74   316   116   376   109   381 0.78 MreB/Mbl protein
DUF1995              PF09353.5    210 sp|P0A6Y8|DNAK_ECOLI -            638    0.0051   16.4   1.7   2   2   9.3e-06      0.02   14.5   0.7     1    46   557   604   557   631 0.84 Domain of unknown function (DUF1995)
FGGY_C               PF02782.11   198 sp|P0A6Y8|DNAK_ECOLI -            638    0.0058   16.2   0.0   1   1   7.1e-06     0.015   14.9   0.0   145   196   311   381   299   383 0.75 FGGY family of carbohydrate kinases, C-terminal domain
Hydantoinase_A       PF01968.13   290 sp|P0A6Y8|DNAK_ECOLI -            638     0.018   14.1   0.2   2   4   8.7e-06     0.018   14.1   0.2    60   107   170   218   154   238 0.82 Hydantoinase/oxoprolinase
DNA_ligase_aden      PF01653.13   315 sp|P15042|DNLJ_ECOLI -            671  1.4e-134  448.0   0.0   1   1  1.7e-137    2e-134  447.5   0.0     2   315     3   318     2   318 0.98 NAD-dependent DNA ligase adenylation domain
DNA_ligase_OB        PF03120.11    82 sp|P15042|DNLJ_ECOLI -            671   7.4e-36  121.6   1.3   1   1   1.8e-38   2.1e-35  120.2   1.3     2    81   321   400   320   401 0.98 NAD-dependent DNA ligase OB-fold domain
HHH_2                PF12826.2     64 sp|P15042|DNLJ_ECOLI -            671   3.9e-26   90.7   0.5   2   2   3.5e-26     4e-23   81.0   0.3     1    64   510   573   510   573 0.98 Helix-hairpin-helix motif
HHH_5                PF14520.1     60 sp|P15042|DNLJ_ECOLI -            671   1.7e-18   66.5   0.1   1   2   2.2e-11   2.6e-08   33.9   0.0     3    59   444   501   442   502 0.94 Helix-hairpin-helix domain
HHH_5                PF14520.1     60 sp|P15042|DNLJ_ECOLI -            671   1.7e-18   66.5   0.1   2   2   4.8e-10   5.4e-07   29.6   0.0     2    49   509   555   508   565 0.93 Helix-hairpin-helix domain
BRCT                 PF00533.21    78 sp|P15042|DNLJ_ECOLI -            671   1.4e-13   50.8   0.0   1   1   3.4e-16   3.9e-13   49.3   0.0     4    77   596   668   593   669 0.96 BRCA1 C Terminus (BRCT) domain
DNA_ligase_ZBD       PF03119.11    28 sp|P15042|DNLJ_ECOLI -            671   5.8e-12   45.0   4.8   1   1   5.1e-15   5.8e-12   45.0   4.8     1    28   407   434   407   434 0.97 NAD-dependent DNA ligase C4 zinc finger domain
PTCB-BRCT            PF12738.2     63 sp|P15042|DNLJ_ECOLI -            671   2.7e-06   27.1   0.0   1   1   6.7e-09   7.6e-06   25.6   0.0     5    59   605   660   602   661 0.88 twin BRCT domain
HHH                  PF00633.18    30 sp|P15042|DNLJ_ECOLI -            671   3.8e-06   26.2   0.2   2   2   4.8e-08   5.5e-05   22.6   0.0     1    30   534   563   534   563 0.93 Helix-hairpin-helix motif
DUF4267              PF14087.1    113 sp|P15042|DNLJ_ECOLI -            671     0.039   13.5   0.0   1   1   7.4e-05     0.084   12.4   0.0    31    70   503   542   477   581 0.82 Domain of unknown function (DUF4267)
Prok-E2_C            PF14459.1    131 sp|P15042|DNLJ_ECOLI -            671     0.074   13.1   0.0   1   1   0.00014      0.16   12.0   0.0    20    78   337   397   327   408 0.78 Prokaryotic E2 family C
RNA_pol_A_CTD        PF03118.10    67 sp|P15042|DNLJ_ECOLI -            671     0.098   12.0   0.0   1   1   0.00043      0.49    9.8   0.0    30    67   465   502   463   502 0.93 Bacterial RNA polymerase, alpha chain C terminal domain
5_3_exonuc           PF01367.15   101 sp|P15042|DNLJ_ECOLI -            671       0.1   12.8   0.1   1   1   0.00053       0.6   10.3   0.0    22    52   516   547   514   579 0.86 5'-3' exonuclease, C-terminal SAM fold
PALP                 PF00291.20   306 sp|P66899|DPAL_ECOLI -            398   1.3e-44  152.7   0.2   1   1   2.1e-48   1.6e-44  152.4   0.2     4   304    41   374    39   377 0.84 Pyridoxal-phosphate dependent enzyme
DNA_pol_A            PF00476.15   383 sp|P00582|DPO1_ECOLI -            928    3e-160  533.0   0.0   1   1  2.1e-163    4e-160  532.6   0.0     2   383   548   927   547   927 0.99 DNA polymerase family A
5_3_exonuc_N         PF02739.11   169 sp|P00582|DPO1_ECOLI -            928   1.8e-59  199.8   0.0   1   1   2.3e-62   4.2e-59  198.7   0.0     2   169     8   169     7   169 0.99 5'-3' exonuclease, N-terminal resolvase-like domain
DNA_pol_A_exo1       PF01612.15   176 sp|P00582|DPO1_ECOLI -            928   3.8e-46  156.7   0.1   1   1     4e-49   7.4e-46  155.8   0.1     1   176   330   517   330   517 0.97 3'-5' exonuclease
5_3_exonuc           PF01367.15   101 sp|P00582|DPO1_ECOLI -            928   3.2e-31  107.5   0.0   1   1   4.4e-34   8.2e-31  106.2   0.0     1    99   171   275   171   277 0.97 5'-3' exonuclease, C-terminal SAM fold
HHH                  PF00633.18    30 sp|P00582|DPO1_ECOLI -            928    0.0076   15.8   0.1   1   1   1.4e-05     0.026   14.2   0.1    16    29   193   206   191   207 0.92 Helix-hairpin-helix motif
Prok-E2_E            PF14462.1    123 sp|P00582|DPO1_ECOLI -            928     0.045   13.3   0.0   1   1   5.7e-05      0.11   12.1   0.0     6    58   463   517   458   520 0.86 Prokaryotic E2 family E
HHH_2                PF12826.2     64 sp|P00582|DPO1_ECOLI -            928     0.074   12.9   0.0   1   1   0.00011       0.2   11.5   0.0     7    31   192   216   190   225 0.88 Helix-hairpin-helix motif
HHH_5                PF14520.1     60 sp|P00582|DPO1_ECOLI -            928     0.077   13.1   0.0   1   1   0.00017      0.31   11.2   0.0     8    42   191   223   179   239 0.72 Helix-hairpin-helix domain
DNA_pol_B            PF00136.16   466 sp|P21189|DPO2_ECOLI -            783   9.5e-50  169.7   0.0   1   2   1.4e-10   6.8e-07   28.4   0.2    42    73   400   430   373   441 0.90 DNA polymerase family B
DNA_pol_B            PF00136.16   466 sp|P21189|DPO2_ECOLI -            783   9.5e-50  169.7   0.0   2   2   3.6e-44   1.8e-40  139.1   0.0   159   450   490   771   442   779 0.85 DNA polymerase family B
DNA_pol_B_exo1       PF03104.14   325 sp|P21189|DPO2_ECOLI -            783     2e-16   59.7   0.0   1   1   5.9e-19   2.9e-15   55.9   0.0    67   325    75   296    64   296 0.86 DNA polymerase family B, exonuclease domain
RNase_H_2            PF13482.1    164 sp|P21189|DPO2_ECOLI -            783    0.0032   17.3   0.0   1   1   2.7e-06     0.013   15.3   0.0     3   114   155   302   153   347 0.67 RNase_H superfamily
DNA_pol3_alpha       PF07733.7    426 sp|P10443|DPO3A_ECOLI -           1160  2.4e-177  589.6   0.0   1   1  8.4e-181  3.1e-177  589.2   0.0     2   426   291   735   290   735 0.96 Bacterial DNA polymerase III alpha subunit
PHP                  PF02811.14   175 sp|P10443|DPO3A_ECOLI -           1160   4.3e-30  104.7   0.0   1   1   3.2e-33   1.2e-29  103.3   0.0     1   170     7   178     7   192 0.96 PHP domain
HHH_6                PF14579.1     90 sp|P10443|DPO3A_ECOLI -           1160   8.9e-25   86.5   0.0   1   1   6.2e-28   2.3e-24   85.2   0.0     1    90   808   898   808   898 0.97 Helix-hairpin-helix motif
tRNA_anti-codon      PF01336.20    75 sp|P10443|DPO3A_ECOLI -           1160   5.8e-09   35.6   0.1   1   1   3.3e-12   1.2e-08   34.6   0.1     2    74  1000  1072   996  1073 0.93 OB-fold nucleic acid binding domain
DNA_pol3_tau_5       PF12170.3    142 sp|P06710|DPO3X_ECOLI -            643   3.7e-94  312.1   5.3   1   1   8.6e-97   7.5e-94  311.1   5.3     1   142   499   640   499   640 1.00 DNA polymerase III tau subunit V interacting with alpha
DNA_pol3_delta2      PF13177.1    162 sp|P06710|DPO3X_ECOLI -            643   3.5e-40  137.3   0.0   1   1   6.8e-43   5.9e-40  136.5   0.0     1   161    20   178    20   179 0.98 DNA polymerase III, delta subunit
DNA_pol3_gamma3      PF12169.3    143 sp|P06710|DPO3X_ECOLI -            643   7.6e-31  106.7   4.8   1   1   1.9e-33   1.6e-30  105.7   1.1     1   131   232   360   232   372 0.91 DNA polymerase III subunits gamma and tau domain III
DNA_pol3_tau_4       PF12168.3     84 sp|P06710|DPO3X_ECOLI -            643   4.6e-22   78.2  12.8   1   1   1.6e-24   1.4e-21   76.6  12.8     1    84   416   498   416   498 0.98 DNA polymerase III subunits tau domain IV DnaB-binding
AAA                  PF00004.24   132 sp|P06710|DPO3X_ECOLI -            643   8.4e-12   45.4   0.1   1   1   6.1e-14   5.3e-11   42.8   0.0     2   125    42   171    41   177 0.80 ATPase family associated with various cellular activities (AAA)
RuvB_N               PF05496.7    234 sp|P06710|DPO3X_ECOLI -            643   1.9e-06   27.1   0.0   1   2   4.7e-08   4.1e-05   22.7   0.0    15    85     7    73     2    82 0.85 Holliday junction DNA helicase ruvB N-terminus
AAA_22               PF13401.1    131 sp|P06710|DPO3X_ECOLI -            643   1.3e-05   25.3   0.0   1   1   7.2e-08   6.3e-05   23.1   0.0     7   122    41   155    37   163 0.71 AAA domain
TIP49                PF06068.8    398 sp|P06710|DPO3X_ECOLI -            643   3.1e-05   22.8   1.3   2   2   7.8e-06    0.0068   15.1   0.3   281   394   122   223    88   226 0.86 TIP49 C-terminus
AAA_5                PF07728.9    139 sp|P06710|DPO3X_ECOLI -            643   3.1e-05   23.7   0.0   1   1   1.1e-07   9.6e-05   22.1   0.0     3    93    42   147    40   161 0.76 AAA domain (dynein-related subfamily)
DNA_pol3_delta       PF06144.8    172 sp|P06710|DPO3X_ECOLI -            643    0.0001   21.8   0.1   1   1   2.4e-07   0.00021   20.8   0.1    73   161   131   215   121   219 0.86 DNA polymerase III, delta subunit
AAA_17               PF13207.1    121 sp|P06710|DPO3X_ECOLI -            643   0.00011   23.0   0.1   1   1   3.9e-07   0.00034   21.4   0.0     3    78    42   128    41   199 0.63 AAA domain
AAA_16               PF13191.1    185 sp|P06710|DPO3X_ECOLI -            643    0.0016   18.4   1.2   1   1   1.9e-06    0.0016   18.4   1.2     2    63    18    79    17   166 0.69 AAA ATPase domain
AAA_14               PF13173.1    128 sp|P06710|DPO3X_ECOLI -            643     0.005   16.7   0.0   1   1   1.4e-05     0.012   15.4   0.0     4    96    40   156    38   182 0.67 AAA domain
AAA_18               PF13238.1    129 sp|P06710|DPO3X_ECOLI -            643     0.014   15.7   0.0   1   1   3.3e-05     0.029   14.6   0.0     3    26    43    79    42   129 0.75 AAA domain
SKI                  PF01202.17   158 sp|P06710|DPO3X_ECOLI -            643     0.048   13.5   0.3   1   1   0.00026      0.23   11.3   0.1     1    19    47    65    47    66 0.94 Shikimate kinase
PIF1                 PF05970.9    364 sp|P06710|DPO3X_ECOLI -            643     0.074   11.9   0.0   1   1   0.00014      0.12   11.3   0.0    22   127    38   144    19   150 0.70 PIF1-like helicase
IMS                  PF00817.15   149 sp|Q47155|DPO4_ECOLI -            351   2.5e-49  166.9   0.0   1   1   1.3e-52   3.9e-49  166.2   0.0     1   149     7   154     7   154 0.99 impB/mucB/samB family
IMS_C                PF11799.3    127 sp|Q47155|DPO4_ECOLI -            351   1.5e-10   41.0   0.1   1   1   1.1e-13   3.1e-10   40.0   0.1     2   124   232   347   231   350 0.89 impB/mucB/samB family C-terminal domain
IMS_HHH              PF11798.3     32 sp|Q47155|DPO4_ECOLI -            351   1.4e-08   34.2   0.0   1   1   1.2e-11   3.5e-08   33.0   0.0     1    32   166   197   166   197 0.96 IMS family HHH motif
HHH_5                PF14520.1     60 sp|Q47155|DPO4_ECOLI -            351    0.0012   18.9   0.1   1   1   1.7e-06    0.0051   16.9   0.0     7    45   178   216   173   236 0.86 Helix-hairpin-helix domain
DNA_pol_lambd_f      PF10391.4     52 sp|Q47155|DPO4_ECOLI -            351     0.065   12.8   0.0   1   1   4.9e-05      0.15   11.6   0.0     4    31   178   205   176   209 0.90 Fingers domain of DNA polymerase lambda
SBP_bac_5            PF00496.17   374 sp|P23847|DPPA_ECOLI -            535  1.8e-107  359.4   7.1   1   1  2.9e-111  2.2e-107  359.1   7.1     1   372    73   453    73   455 0.95 Bacterial extracellular solute-binding proteins, family 5 Middle
FKBP_C               PF00254.23    94 sp|P23847|DPPA_ECOLI -            535     0.035   14.1   0.2   1   2   2.2e-05      0.16   12.0   0.0    20    76    48   106    40   139 0.84 FKBP-type peptidyl-prolyl cis-trans isomerase
ABC_tran             PF00005.22   137 sp|P0AAG0|DPPD_ECOLI -            327   2.4e-28   99.1   0.0   1   1     2e-31   3.3e-28   98.6   0.0     2   136    24   181    23   182 0.92 ABC transporter
oligo_HPY            PF08352.7     64 sp|P0AAG0|DPPD_ECOLI -            327   3.9e-19   68.7   0.4   1   1   4.1e-22   6.7e-19   67.9   0.4     1    64   233   297   233   297 0.99 Oligopeptide/dipeptide transporter, C-terminal region
AAA_21               PF13304.1    303 sp|P0AAG0|DPPD_ECOLI -            327   7.4e-10   39.2   0.0   2   2     8e-12   1.3e-08   35.1   0.0   231   302   148   217   111   218 0.93 AAA domain
SMC_N                PF02463.14   220 sp|P0AAG0|DPPD_ECOLI -            327   1.1e-07   31.3   0.0   1   1   9.6e-11   1.6e-07   30.8   0.0    25   212    34   228    19   235 0.72 RecF/RecN/SMC N terminal domain
AAA_10               PF12846.2    304 sp|P0AAG0|DPPD_ECOLI -            327   0.00022   20.8   0.5   1   2    0.0001      0.17   11.3   0.1     6    93    38   141    34   169 0.64 AAA-like domain
AAA_15               PF13175.1    415 sp|P0AAG0|DPPD_ECOLI -            327   0.00048   19.2   0.1   2   2   9.8e-07    0.0016   17.5   0.0   372   414   174   216   148   217 0.89 AAA ATPase domain
AAA_25               PF13481.1    194 sp|P0AAG0|DPPD_ECOLI -            327    0.0057   16.0   0.0   1   2   1.3e-05     0.022   14.1   0.0     9    59    10    66     4    90 0.74 AAA domain
AAA_29               PF13555.1     62 sp|P0AAG0|DPPD_ECOLI -            327     0.033   13.7   0.0   1   1   3.8e-05     0.062   12.8   0.0    18    47    29    57    21    73 0.74 P-loop containing region of AAA domain
BPD_transp_1         PF00528.17   185 sp|P0AEF8|DPPB_ECOLI -            339   2.1e-46  157.7  14.5   2   2   1.4e-50   2.1e-46  157.7  14.5     1   184   114   336   114   337 0.99 Binding-protein-dependent transport system inner membrane component
ABC_tran             PF00005.22   137 sp|P37313|DPPF_ECOLI -            334   7.1e-32  110.5   0.0   1   1   8.6e-35   9.8e-32  110.1   0.0     1   136    38   189    38   190 0.96 ABC transporter
oligo_HPY            PF08352.7     64 sp|P37313|DPPF_ECOLI -            334   5.8e-20   71.4   0.6   1   1   9.8e-23   1.1e-19   70.5   0.6     1    64   241   306   241   306 0.97 Oligopeptide/dipeptide transporter, C-terminal region
AAA_21               PF13304.1    303 sp|P37313|DPPF_ECOLI -            334   7.2e-08   32.7   0.0   2   2   2.4e-08   2.7e-05   24.2   0.0   188   302   108   225    85   226 0.79 AAA domain
AAA_16               PF13191.1    185 sp|P37313|DPPF_ECOLI -            334    0.0025   17.8   0.0   1   1   6.4e-06    0.0074   16.2   0.0    11    48    33    71    32   124 0.82 AAA ATPase domain
DUF258               PF03193.11   161 sp|P37313|DPPF_ECOLI -            334    0.0027   16.9   0.0   1   1   4.7e-06    0.0054   15.9   0.0    25    56    37    69    24   109 0.86 Protein of unknown function, DUF258
SMC_N                PF02463.14   220 sp|P37313|DPPF_ECOLI -            334    0.0053   16.0   0.0   1   1   8.5e-06    0.0097   15.1   0.0    26   209    50   233    35   243 0.71 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P37313|DPPF_ECOLI -            334    0.0058   16.1   0.1   1   1   8.9e-06      0.01   15.3   0.1    13    39    39    64    36    80 0.86 P-loop containing region of AAA domain
AAA_10               PF12846.2    304 sp|P37313|DPPF_ECOLI -            334     0.011   15.2   0.0   1   1   1.8e-05     0.021   14.2   0.0     4    88    51   146    48   174 0.83 AAA-like domain
AAA_22               PF13401.1    131 sp|P37313|DPPF_ECOLI -            334      0.02   15.0   1.3   1   1   7.5e-05     0.086   12.9   1.3     5    26    49    70    45   227 0.60 AAA domain
AAA_18               PF13238.1    129 sp|P37313|DPPF_ECOLI -            334     0.023   15.0   0.9   1   1   0.00017       0.2   11.9   0.9     2    19    52    69    51   285 0.88 AAA domain
IstB_IS21            PF01695.12   178 sp|P37313|DPPF_ECOLI -            334     0.025   13.9   0.0   1   1   3.5e-05     0.039   13.3   0.0    29    86    29    86     3   104 0.78 IstB-like ATP binding protein
KaiC                 PF06745.8    227 sp|P37313|DPPF_ECOLI -            334      0.13   11.3   0.1   1   2   0.00073      0.83    8.7   0.1    16    36    45    65    34    73 0.85 KaiC
BPD_transp_1         PF00528.17   185 sp|P0AEG1|DPPC_ECOLI -            300   5.1e-31  107.6  17.3   2   2   3.1e-34   1.2e-30  106.4  12.8     1   184   116   299   116   300 0.98 Binding-protein-dependent transport system inner membrane component
OppC_N               PF12911.2     56 sp|P0AEG1|DPPC_ECOLI -            300   8.7e-17   60.2   0.9   1   3   2.3e-20   8.7e-17   60.2   0.9     2    55    16    69    15    70 0.90 N-terminal TM domain of oligopeptide transport permease C
Colicin_V            PF02674.11   146 sp|P0AEG1|DPPC_ECOLI -            300     0.074   12.9   0.0   1   3     2e-05     0.074   12.9   0.0    96   140    26    69    19    76 0.88 Colicin V production protein
DUF624               PF04854.9     77 sp|P0AEG1|DPPC_ECOLI -            300      0.16   11.8   0.1   1   2   4.3e-05      0.16   11.8   0.1    43    74    17    46     1    51 0.68 Protein of unknown function, DUF624
Ferritin             PF00210.19   142 sp|P0ABT2|DPS_ECOLI  -            167   2.5e-18   66.2   0.1   1   1     2e-22   2.9e-18   65.9   0.1     2   136    31   166    30   167 0.94 Ferritin-like domain
DSBA                 PF01323.15   193 sp|P0AEG4|DSBA_ECOLI -            208   7.3e-32  110.4   3.3   1   1   2.4e-34   5.9e-31  107.5   3.3     1   192    40   197    40   198 0.95 DSBA-like thioredoxin domain
Thioredoxin_4        PF13462.1    163 sp|P0AEG4|DSBA_ECOLI -            208   4.4e-10   39.8   0.0   1   1   2.6e-13   6.3e-10   39.2   0.0    16   151    40   182    33   191 0.70 Thioredoxin
Thioredoxin_2        PF13098.1    112 sp|P0AEG4|DSBA_ECOLI -            208     5e-05   23.4   0.1   1   1   9.6e-08   0.00024   21.2   0.1     5    94    37   177    33   192 0.75 Thioredoxin-like domain
Thioredoxin          PF00085.15   104 sp|P0AEG4|DSBA_ECOLI -            208     0.011   15.3   0.4   1   2   6.6e-05      0.16   11.6   0.1    19    57    38    79    24   129 0.79 Thioredoxin
Lpp-LpqN             PF10738.4    175 sp|P0AEG4|DSBA_ECOLI -            208     0.022   14.0   0.0   1   1   1.4e-05     0.034   13.4   0.0    97   140   154   199   147   206 0.82 Probable lipoprotein LpqN
VanZ                 PF04892.7    133 sp|P0AEG4|DSBA_ECOLI -            208      0.13   12.2   0.0   1   1   0.00011      0.26   11.2   0.0    91   112   111   133    77   134 0.83 VanZ like family
DsbB                 PF02600.11   156 sp|P0A6M2|DSBB_ECOLI -            176   2.7e-42  144.2  14.5   1   1   5.9e-46   2.9e-42  144.1  14.5     3   155    10   161     1   162 0.96 Disulfide bond formation protein DsbB
Phage_holin_6        PF10746.4     66 sp|P0A6M2|DSBB_ECOLI -            176       0.1   12.3   0.0   1   1   4.2e-05      0.21   11.3   0.0    18    57   125   166   117   172 0.74 Phage holin family 6
Thioredoxin_2        PF13098.1    112 sp|P0AEG6|DSBC_ECOLI -            236   1.3e-24   86.5   0.0   1   1   1.1e-27   2.3e-24   85.7   0.0     3   112   104   226   101   226 0.75 Thioredoxin-like domain
DsbC_N               PF10411.4     57 sp|P0AEG6|DSBC_ECOLI -            236   8.1e-17   60.2   0.1   1   1   9.4e-20     2e-16   58.9   0.1     1    56    25    77    25    78 0.96 Disulfide bond isomerase protein N-terminus
DSBA                 PF01323.15   193 sp|P0AEG6|DSBC_ECOLI -            236   2.8e-07   30.3   0.3   2   3   7.5e-05      0.16   11.5   0.0     2    38   110   144   109   158 0.86 DSBA-like thioredoxin domain
DSBA                 PF01323.15   193 sp|P0AEG6|DSBC_ECOLI -            236   2.8e-07   30.3   0.3   3   3   3.4e-06    0.0073   15.8   0.0   151   192   185   226   165   227 0.85 DSBA-like thioredoxin domain
Thioredoxin_4        PF13462.1    163 sp|P0AEG6|DSBC_ECOLI -            236   5.1e-07   29.8   0.1   1   2   5.9e-06     0.013   15.5   0.4    11    80   104   170    95   182 0.71 Thioredoxin
Thioredoxin_4        PF13462.1    163 sp|P0AEG6|DSBC_ECOLI -            236   5.1e-07   29.8   0.1   2   2   4.2e-05     0.089   12.7   0.0   118   163   182   228   149   228 0.77 Thioredoxin
TraF                 PF13728.1    215 sp|P0AEG6|DSBC_ECOLI -            236     0.056   12.9   0.0   1   2   8.6e-05      0.18   11.2   0.0    81   142    66   128    56   141 0.80 F plasmid transfer operon protein
HxlR                 PF01638.12    91 sp|P0AEG6|DSBC_ECOLI -            236     0.095   12.3   0.0   1   1     8e-05      0.17   11.5   0.0    30    55    81   106    73   117 0.87 HxlR-like helix-turn-helix
Thioredoxin_8        PF13905.1     95 sp|P0AEG6|DSBC_ECOLI -            236      0.12   12.5   0.0   1   1   0.00013      0.27   11.3   0.0     4    88   109   207   106   211 0.80 Thioredoxin-like
DsbC                 PF11412.3    117 sp|P36655|DSBD_ECOLI -            565   3.4e-36  123.6   0.3   1   1   3.1e-39   5.8e-36  122.8   0.3     2   115    28   138    27   140 0.97 Disulphide bond corrector protein DsbC
DsbD                 PF02683.10   211 sp|P36655|DSBD_ECOLI -            565   6.3e-20   71.6  19.7   1   1   5.4e-23     1e-19   71.0  19.7     2   209   171   376   170   378 0.83 Cytochrome C biogenesis protein transmembrane region
Thioredoxin_7        PF13899.1     82 sp|P36655|DSBD_ECOLI -            565   2.2e-13   50.0   0.1   1   1     2e-16   3.7e-13   49.2   0.1     6    81   459   536   454   537 0.81 Thioredoxin-like
Thioredoxin_2        PF13098.1    112 sp|P36655|DSBD_ECOLI -            565     6e-13   48.9   0.0   1   1   7.2e-16   1.3e-12   47.8   0.0     2   112   465   560   464   560 0.87 Thioredoxin-like domain
DsbD_2               PF13386.1    199 sp|P36655|DSBD_ECOLI -            565   2.6e-10   40.3  25.8   1   2   1.4e-13   2.6e-10   40.3  25.8     2   182   170   355   169   375 0.75 Cytochrome C biogenesis protein transmembrane region
Thioredoxin          PF00085.15   104 sp|P36655|DSBD_ECOLI -            565   1.4e-08   34.2   0.0   1   1   1.3e-11   2.4e-08   33.5   0.0     9   101   458   560   451   563 0.66 Thioredoxin
Thioredoxin_8        PF13905.1     95 sp|P36655|DSBD_ECOLI -            565    0.0029   17.6   0.1   1   2   0.00043       0.8    9.8   0.1     1    20   468   487   467   490 0.91 Thioredoxin-like
Thioredox_DsbH       PF03190.10   163 sp|P36655|DSBD_ECOLI -            565     0.094   12.4   0.0   1   1     9e-05      0.17   11.6   0.0    33    72   464   503   444   519 0.86 Protein of unknown function, DUF255
Redoxin              PF08534.5    146 sp|P0AA86|DSBE_ECOLI -            185   1.8e-25   89.2   0.0   1   1     9e-29   2.2e-25   88.8   0.0     3   137    42   165    40   173 0.93 Redoxin
AhpC-TSA             PF00578.16   124 sp|P0AA86|DSBE_ECOLI -            185   8.8e-16   57.7   0.0   1   1   4.4e-19   1.1e-15   57.4   0.0     1   124    41   158    41   158 0.89 AhpC/TSA family
Thioredoxin_2        PF13098.1    112 sp|P0AA86|DSBE_ECOLI -            185   3.2e-10   40.2   0.0   1   1   1.8e-13   4.4e-10   39.7   0.0     4   106    67   166    64   172 0.85 Thioredoxin-like domain
Thioredoxin_8        PF13905.1     95 sp|P0AA86|DSBE_ECOLI -            185   2.8e-07   30.5   0.0   1   1   1.9e-10   4.6e-07   29.8   0.0     1    94    68   154    68   155 0.87 Thioredoxin-like
Thioredoxin          PF00085.15   104 sp|P0AA86|DSBE_ECOLI -            185   8.8e-05   22.1   0.0   1   1   8.4e-08   0.00021   20.9   0.0     8    44    58    94    52   114 0.81 Thioredoxin
Thioredoxin_7        PF13899.1     82 sp|P0AA86|DSBE_ECOLI -            185   0.00024   21.0   0.0   1   1   1.9e-07   0.00048   20.0   0.0    14    34    65    85    61   122 0.87 Thioredoxin-like
Thioredoxin_2        PF13098.1    112 sp|P77202|DSBG_ECOLI -            248   8.3e-11   42.0   0.1   2   2   2.2e-13   4.7e-10   39.6   0.0     7   108   116   241   110   245 0.59 Thioredoxin-like domain
Thioredoxin_4        PF13462.1    163 sp|P77202|DSBG_ECOLI -            248   2.7e-07   30.7   0.0   1   1   3.2e-10   6.9e-07   29.4   0.0     9    75   110   174   102   231 0.74 Thioredoxin
DsbC_N               PF10411.4     57 sp|P77202|DSBG_ECOLI -            248     0.013   14.7   0.1   1   1   1.3e-05     0.027   13.7   0.1    34    53    56    75    49    79 0.87 Disulfide bond isomerase protein N-terminus
AhpC-TSA             PF00578.16   124 sp|P77202|DSBG_ECOLI -            248     0.013   15.1   0.1   1   1   1.4e-05      0.03   14.0   0.1    24   122   112   230    99   232 0.76 AhpC/TSA family
DSBA                 PF01323.15   193 sp|P77202|DSBG_ECOLI -            248     0.056   13.0   0.7   1   2   0.00012      0.25   10.8   0.4     2    36   118   149   117   190 0.74 DSBA-like thioredoxin domain
DUF1870              PF08965.5    118 sp|P77202|DSBG_ECOLI -            248      0.12   11.9   0.0   1   1   0.00012      0.25   11.0   0.0    20    64   163   211   154   232 0.77 Domain of unknown function (DUF1870)
GntP_permease        PF02447.11   441 sp|P08555|DSDX_ECOLI -            445  1.5e-163  544.4  47.3   1   1  3.5e-167  1.7e-163  544.2  47.3     2   441     7   444     6   444 0.99 GntP family permease
Na_H_antiport_2      PF13726.1     88 sp|P08555|DSDX_ECOLI -            445    0.0054   16.6   4.3   1   2   0.00016       0.8    9.6   6.0     8    66    15    75     8    95 0.82 Na+-H+ antiporter family
Na_H_antiport_2      PF13726.1     88 sp|P08555|DSDX_ECOLI -            445    0.0054   16.6   4.3   2   2   1.1e-06    0.0054   16.6   4.3    21    85   273   337   269   341 0.92 Na+-H+ antiporter family
DSRB                 PF10781.4     62 sp|P0AEG8|DSRB_ECOLI -             62   3.9e-41  138.3   0.2   1   1   2.8e-45   4.2e-41  138.2   0.2     1    61     1    61     1    62 0.98 Dextransucrase DSRB
Tyr_Deacylase        PF02580.11   145 sp|P0A6M4|DTD_ECOLI  -            145   6.8e-55  185.0   0.1   1   1   5.1e-59   7.5e-55  184.8   0.1     2   144     3   144     2   145 0.99 D-Tyr-tRNA(Tyr) deacylase
PTR2                 PF00854.16   373 sp|P77304|DTPA_ECOLI -            500   4.1e-75  252.8  26.0   1   2     1e-78   5.1e-75  252.5  23.0     2   370    89   428    88   431 0.97 POT family
MFS_1                PF07690.11   352 sp|P77304|DTPA_ECOLI -            500   1.1e-19   70.3  54.6   1   2   3.1e-20   1.5e-16   60.0  37.1    10   298    35   371    26   382 0.79 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P77304|DTPA_ECOLI -            500   1.1e-19   70.3  54.6   2   2   3.6e-06     0.018   13.7  11.3    84   178   381   483   369   499 0.82 Major Facilitator Superfamily
PTR2                 PF00854.16   373 sp|P36837|DTPB_ECOLI -            489   2.5e-79  266.7  24.6   1   1   8.8e-83   3.2e-79  266.3  24.6     2   372    82   427    81   428 0.97 POT family
MFS_1                PF07690.11   352 sp|P36837|DTPB_ECOLI -            489     4e-14   52.1  58.4   1   2   2.8e-14     1e-10   40.8  31.2    14   311    32   307    16   345 0.67 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P36837|DTPB_ECOLI -            489     4e-14   52.1  58.4   2   2   1.5e-06    0.0055   15.4  19.2    64   171   353   475   348   487 0.80 Major Facilitator Superfamily
MFS_2                PF13347.1    428 sp|P36837|DTPB_ECOLI -            489    0.0026   16.2   6.5   1   3   7.1e-07    0.0026   16.2   6.5   217   342     6   132     1   134 0.85 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P36837|DTPB_ECOLI -            489    0.0026   16.2   6.5   2   3   8.1e-05       0.3    9.4   1.1   260   308   143   191   139   202 0.87 MFS/sugar transport protein
DUF4133              PF13571.1     96 sp|P36837|DTPB_ECOLI -            489     0.007   16.5   1.8   1   1   1.9e-06     0.007   16.5   1.8     3    67   198   263   196   271 0.91 Domain of unknown function (DUF4133)
PTR2                 PF00854.16   373 sp|P39276|DTPC_ECOLI -            485   1.6e-69  234.4  17.4   1   1   5.9e-73   2.9e-69  233.6  17.4     3   370    77   417    75   420 0.95 POT family
MFS_1                PF07690.11   352 sp|P39276|DTPC_ECOLI -            485   6.5e-19   67.8  45.8   1   2   1.3e-22   6.5e-19   67.8  45.8     9   346    21   418    13   425 0.77 Major Facilitator Superfamily
PIRT                 PF15099.1    129 sp|P39276|DTPC_ECOLI -            485    0.0049   16.0   1.3   1   2   3.3e-06     0.016   14.4   0.3    56    98   315   362   309   367 0.84 Phosphoinositide-interacting protein family
PTR2                 PF00854.16   373 sp|P75742|DTPD_ECOLI -            493   1.7e-73  247.6  15.9   1   1   4.2e-77   2.1e-73  247.2  15.9     2   371    77   424    76   426 0.97 POT family
MFS_1                PF07690.11   352 sp|P75742|DTPD_ECOLI -            493     1e-16   60.6  41.1   1   1   4.2e-19   2.1e-15   56.3  41.0     9   345    22   423    14   431 0.74 Major Facilitator Superfamily
DUF3290              PF11694.3    149 sp|P75742|DTPD_ECOLI -            493      0.11   12.1   1.0   1   1   6.5e-05      0.32   10.7   1.0    14    60   232   278   226   285 0.89 Protein of unknown function (DUF3290)
Dus                  PF01207.12   310 sp|P32695|DUSA_ECOLI -            345  8.6e-100  333.5   0.0   1   1    2e-103     1e-99  333.3   0.0     2   308    30   340    29   342 0.98 Dihydrouridine synthase (Dus)
His_biosynth         PF00977.16   229 sp|P32695|DUSA_ECOLI -            345     0.018   14.3   0.0   2   2   1.4e-05     0.068   12.4   0.0    74   116   221   262   206   271 0.85 Histidine biosynthesis protein
PcrB                 PF01884.12   231 sp|P32695|DUSA_ECOLI -            345     0.029   13.6   0.0   2   2   2.7e-05      0.13   11.4   0.0   173   220   211   257   207   265 0.84 PcrB family
Dus                  PF01207.12   310 sp|P0ABT5|DUSB_ECOLI -            321    1e-115  385.8   0.0   1   1  7.8e-119  1.2e-115  385.6   0.0     2   307    14   318    12   321 0.98 Dihydrouridine synthase (Dus)
His_biosynth         PF00977.16   229 sp|P0ABT5|DUSB_ECOLI -            321   8.5e-05   21.9   0.1   1   1   1.1e-07   0.00016   21.0   0.1    91   222   100   226    76   230 0.82 Histidine biosynthesis protein
DHO_dh               PF01180.16   295 sp|P0ABT5|DUSB_ECOLI -            321   0.00011   21.2   0.0   1   2   9.6e-06     0.014   14.3   0.0   120   195    86   168    40   177 0.70 Dihydroorotate dehydrogenase
Oxidored_FMN         PF00724.15   341 sp|P0ABT5|DUSB_ECOLI -            321   0.00068   18.7   0.0   2   2   2.3e-05     0.033   13.1   0.0   269   324   172   227   139   242 0.76 NADH:flavin oxidoreductase / NADH oxidase family
PEP_mutase           PF13714.1    238 sp|P0ABT5|DUSB_ECOLI -            321    0.0019   17.4   0.1   1   1     3e-06    0.0045   16.2   0.0    59   132   123   192   114   202 0.82 Phosphoenolpyruvate phosphomutase
SOR_SNZ              PF01680.12   209 sp|P0ABT5|DUSB_ECOLI -            321    0.0023   17.5   1.3   1   2   0.00015      0.22   11.0   0.2    25    91    80   152    76   156 0.80 SOR/SNZ family
NanE                 PF04131.9    192 sp|P0ABT5|DUSB_ECOLI -            321    0.0088   15.0   0.0   1   1   1.3e-05     0.019   13.9   0.0   119   176   167   227   147   239 0.78 Putative N-acetylmannosamine-6-phosphate epimerase
ThiG                 PF05690.9    247 sp|P0ABT5|DUSB_ECOLI -            321     0.028   13.4   0.3   2   2   0.00029      0.43    9.6   0.0   160   206   179   226   151   230 0.84 Thiazole biosynthesis protein ThiG
Pterin_bind          PF00809.17   210 sp|P0ABT5|DUSB_ECOLI -            321     0.042   13.2   0.1   1   2   0.00013      0.19   11.0   0.1    17    42    75   100    70   136 0.84 Pterin binding enzyme
PcrB                 PF01884.12   231 sp|P0ABT5|DUSB_ECOLI -            321     0.081   12.1   0.0   1   2   0.00039      0.58    9.3   0.0    16    64   146   199   139   216 0.87 PcrB family
Dus                  PF01207.12   310 sp|P33371|DUSC_ECOLI -            315   6.3e-97  324.1   0.0   1   1  1.5e-100   7.5e-97  323.8   0.0     2   306     5   304     4   309 0.93 Dihydrouridine synthase (Dus)
Oxidored_FMN         PF00724.15   341 sp|P33371|DUSC_ECOLI -            315   0.00086   18.3   0.0   1   1   2.8e-07    0.0014   17.7   0.0   262   339   164   242   124   244 0.76 NADH:flavin oxidoreductase / NADH oxidase family
His_biosynth         PF00977.16   229 sp|P33371|DUSC_ECOLI -            315     0.012   14.8   0.0   1   1   4.5e-06     0.022   14.0   0.0   147   221   148   225   106   239 0.59 Histidine biosynthesis protein
dUTPase              PF00692.14   129 sp|P06968|DUT_ECOLI  -            151   1.6e-41  140.7   0.0   1   1   1.2e-45   1.8e-41  140.5   0.0     2   129    16   149    15   149 0.98 dUTPase
DXP_reductoisom      PF02670.11   129 sp|P45568|DXR_ECOLI  -            398   6.5e-49  165.7   0.7   1   1   1.3e-52   6.5e-49  165.7   0.7     1   129     4   132     4   132 0.99 1-deoxy-D-xylulose 5-phosphate reductoisomerase
DXPR_C               PF13288.1    121 sp|P45568|DXR_ECOLI  -            398   2.7e-45  153.2   0.3   1   1   1.2e-48   5.9e-45  152.1   0.3     1   121   271   389   271   389 0.99 DXP reductoisomerase C-terminal domain
DXP_redisom_C        PF08436.7     84 sp|P45568|DXR_ECOLI  -            398   8.1e-34  115.3   0.0   1   1   4.4e-37   2.2e-33  113.9   0.0     1    84   146   239   146   239 0.96 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
DXP_synthase_N       PF13292.1    270 sp|P77488|DXS_ECOLI  -            620    5e-113  376.5   0.0   1   1  3.1e-116  7.7e-113  375.9   0.0     2   270    12   282    11   282 0.99 1-deoxy-D-xylulose-5-phosphate synthase
Transket_pyr         PF02779.19   178 sp|P77488|DXS_ECOLI  -            620   7.9e-40  136.2   0.0   1   1   5.6e-43   1.4e-39  135.4   0.0     4   174   320   480   318   482 0.98 Transketolase, pyrimidine binding domain
Transketolase_C      PF02780.15   124 sp|P77488|DXS_ECOLI  -            620   7.7e-29  100.1   0.0   1   1   8.2e-32     2e-28   98.7   0.1     1   122   495   609   495   611 0.96 Transketolase, C-terminal domain
E1_dh                PF00676.15   300 sp|P77488|DXS_ECOLI  -            620   1.2e-06   27.4   0.0   1   1   8.3e-10   2.1e-06   26.7   0.0   104   166   124   186    93   192 0.85 Dehydrogenase E1 component
Transketolase_N      PF00456.16   333 sp|P77488|DXS_ECOLI  -            620   1.8e-05   23.7   0.0   1   2   1.3e-07   0.00033   19.5   0.1   144   192   143   190   118   198 0.86 Transketolase, thiamine diphosphate binding domain
TPP_enzyme_C         PF02775.16   153 sp|P77488|DXS_ECOLI  -            620   2.1e-05   24.1   0.8   1   1   2.1e-08   5.1e-05   22.8   0.2    32    84   125   183   102   194 0.78 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
DHFR_1               PF00186.14   161 sp|P0ABQ4|DYR_ECOLI  -            159   6.8e-59  198.0   0.0   1   1   5.1e-63   7.5e-59  197.9   0.0     1   161     1   158     1   158 0.97 Dihydrofolate reductase
Gp_dh_C              PF02800.15   157 sp|P0A9B6|E4PD_ECOLI -            339   4.2e-53  179.0   0.2   1   1   3.5e-56   5.8e-53  178.5   0.2     1   157   160   316   160   316 0.99 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_N              PF00044.19   151 sp|P0A9B6|E4PD_ECOLI -            339   8.8e-53  178.3   0.1   1   1   1.5e-55   2.5e-52  176.8   0.0     1   151     3   155     3   155 0.99 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
NAD_binding_3        PF03447.11   117 sp|P0A9B6|E4PD_ECOLI -            339    0.0034   17.7   0.0   1   1   6.4e-06      0.01   16.1   0.0     1    89     9   122     9   131 0.74 Homoserine dehydrogenase, NAD binding domain
TrkA_N               PF02254.13   116 sp|P0A9B6|E4PD_ECOLI -            339    0.0096   15.9   0.0   1   1   1.3e-05     0.021   14.8   0.0     1    31     5    37     5    54 0.83 TrkA-N domain
GFO_IDH_MocA         PF01408.17   120 sp|P0A9B6|E4PD_ECOLI -            339     0.015   15.8   0.3   1   1   3.7e-05      0.06   13.8   0.1     1    40     3    42     3   133 0.80 Oxidoreductase family, NAD-binding Rossmann fold
DapB_N               PF01113.15   124 sp|P0A9B6|E4PD_ECOLI -            339     0.015   15.1   0.5   1   1   4.6e-05     0.077   12.9   0.1     1    30     3    34     3   129 0.64 Dihydrodipicolinate reductase, N-terminus
ADH_zinc_N           PF00107.21   130 sp|P0A9B6|E4PD_ECOLI -            339     0.093   12.2   0.0   1   1   0.00011      0.18   11.3   0.0     6    92    17   126    13   158 0.76 Zinc-binding dehydrogenase
ThiF                 PF00899.16   136 sp|P0A9B6|E4PD_ECOLI -            339      0.11   12.2   0.2   1   2   0.00046      0.75    9.6   0.1     3    31     3    32     1    39 0.86 ThiF family
DUF3442              PF11924.3    280 sp|P36943|EAEH_ECOLI -            295   5.2e-85  285.4   0.6   1   1   9.3e-89   6.9e-85  285.0   0.6     2   223    71   293    70   294 0.98 Protein of unknown function (DUF3442)
OMP_b-brl            PF13505.1    176 sp|P36943|EAEH_ECOLI -            295     0.019   14.8   1.9   1   1   7.7e-06     0.057   13.3   1.9     3   141    32   205    31   288 0.69 Outer membrane protein beta-barrel domain
EamA                 PF00892.15   126 sp|P31125|EAMA_ECOLI -            299   1.8e-25   89.3  38.8   1   2   2.4e-15   8.9e-12   45.1  15.7     1   124    14   130    14   131 0.80 EamA-like transporter family
EamA                 PF00892.15   126 sp|P31125|EAMA_ECOLI -            299   1.8e-25   89.3  38.8   2   2   6.4e-17   2.4e-13   50.2  15.1     1   125   153   286   153   287 0.93 EamA-like transporter family
TPT                  PF03151.11   153 sp|P31125|EAMA_ECOLI -            299   4.8e-07   29.5  24.7   1   2   0.00013      0.47   10.0   4.4   115   149    94   128     7   130 0.82 Triose-phosphate Transporter family
TPT                  PF03151.11   153 sp|P31125|EAMA_ECOLI -            299   4.8e-07   29.5  24.7   2   2   6.2e-09   2.3e-05   24.0  12.4     1   149   144   283   144   284 0.91 Triose-phosphate Transporter family
EmrE                 PF13536.1    113 sp|P31125|EAMA_ECOLI -            299    0.0057   16.8  40.1   1   3   3.2e-06     0.012   15.8  17.5    12   104    35   130     7   138 0.85 Multidrug resistance efflux transporter
UAA                  PF08449.6    303 sp|P31125|EAMA_ECOLI -            299      0.18   10.7  20.3   1   2   6.2e-05      0.23   10.3   3.7   208   294    40   129    13   136 0.78 UAA transporter family
LysE                 PF01810.13   191 sp|P38101|EAMB_ECOLI -            195     4e-14   52.3  17.2   1   1   3.1e-18   4.6e-14   52.1  17.2     1   188    14   194    14   195 0.81 LysE type translocator
Entericidin          PF08085.6     21 sp|P0ADB7|ECNB_ECOLI -             48   1.3e-08   34.2   2.6   1   1   1.2e-12   1.8e-08   33.7   2.6     1    21    23    43    23    43 0.98 Entericidin EcnA/B family
Ecotin               PF03974.8    128 sp|P23827|ECOT_ECOLI -            162   2.1e-52  176.1   0.1   1   1   1.7e-56   2.5e-52  175.9   0.1     2   128    28   153    27   153 0.97 Ecotin
Entericidin          PF08085.6     21 sp|P0ADB4|ECNA_ECOLI -             41   5.8e-09   35.3   0.0   1   1   1.8e-12   6.8e-09   35.1   0.0     1    21    20    40    20    40 0.99 Entericidin EcnA/B family
LPAM_1               PF08139.7     25 sp|P0ADB4|ECNA_ECOLI -             41    0.0077   16.4   1.0   1   1   3.1e-06     0.012   15.8   1.0     6    23     1    19     1    20 0.74 Prokaryotic membrane lipoprotein lipid attachment site
CarboxypepD_reg      PF13620.1     82 sp|P77802|ECPC_ECOLI -            841   0.00025   21.0   0.0   1   1   2.9e-07    0.0014   18.6   0.0     1    70   749   810   749   817 0.89 Carboxypeptidase regulatory-like domain
DUF4480              PF13715.1     88 sp|P77802|ECPC_ECOLI -            841   0.00027   20.9   0.0   1   1   1.7e-07   0.00086   19.3   0.0     1    66   749   811   749   818 0.92 Domain of unknown function (DUF4480)
Pollen_Ole_e_I       PF01190.12    97 sp|P77802|ECPC_ECOLI -            841      0.11   12.3   0.0   1   1   5.5e-05      0.27   11.0   0.0    38    75   769   808   761   816 0.80 Pollen proteins Ole e I like
PapD_N               PF00345.15   122 sp|P77188|ECPB_ECOLI -            222   0.00026   20.7   0.0   1   1   2.5e-08   0.00038   20.2   0.0    10    88    29   112    20   145 0.75 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_N               PF00345.15   122 sp|P77263|ECPE_ECOLI -            236   2.4e-05   24.1   0.0   1   2   3.4e-09     5e-05   23.0   0.0     2    96    28   128    27   156 0.72 Pili and flagellar-assembly chaperone, PapD N-terminal domain
GerE                 PF00196.14    58 sp|P71301|ECPR_ECOLI -            196     4e-13   48.4   0.3   1   1   3.9e-16   9.6e-13   47.2   0.3     2    46   143   187   142   190 0.96 Bacterial regulatory proteins, luxR family
Sigma70_r4_2         PF08281.7     54 sp|P71301|ECPR_ECOLI -            196   4.7e-05   22.7   0.1   1   1   3.3e-08   8.3e-05   21.9   0.1    12    54   146   187   142   187 0.90 Sigma-70, region 4
HTH_7                PF02796.10    45 sp|P71301|ECPR_ECOLI -            196   8.4e-05   22.3   0.1   1   1   7.1e-08   0.00017   21.3   0.1    12    39   150   177   138   178 0.90 Helix-turn-helix domain of resolvase
HTH_23               PF13384.1     50 sp|P71301|ECPR_ECOLI -            196   0.00022   20.7   0.0   1   1   1.7e-07   0.00041   19.9   0.0     8    40   150   182   143   188 0.88 Homeodomain-like domain
HTH_29               PF13551.1    112 sp|P71301|ECPR_ECOLI -            196    0.0051   16.9   0.0   1   1   4.4e-06     0.011   15.8   0.0     3    39   151   186   149   193 0.89 Winged helix-turn helix
HTH_38               PF13936.1     44 sp|P71301|ECPR_ECOLI -            196      0.11   12.0   0.3   1   1   8.3e-05      0.21   11.1   0.3    10    38   148   177   144   179 0.87 Helix-turn-helix domain
ILVD_EDD             PF00920.16   521 sp|P0ADF6|EDD_ECOLI  -            603  1.7e-169  564.6   0.1   1   1  1.3e-173  1.9e-169  564.4   0.1     2   521    66   598    65   598 0.96 Dehydratase family
Dyp_perox            PF04261.7    313 sp|P31545|EFEB_ECOLI -            423  4.7e-111  370.4   0.0   1   1  3.7e-115  5.5e-111  370.2   0.0     1   312    61   410    61   411 0.99 Dyp-type peroxidase family
FTR1                 PF03239.9    306 sp|P75901|EFEU_ECOLI -            276   2.5e-78  263.1  17.9   1   1   3.8e-82   2.8e-78  262.9  17.9     1   304     1   274     1   276 0.98 Iron permease FTR1 family
RHD3                 PF05879.7    743 sp|P75901|EFEU_ECOLI -            276       0.2    9.5   0.0   1   1   3.5e-05      0.26    9.1   0.0   406   470    69   133    55   146 0.81 Root hair defective 3 GTP-binding protein (RHD3)
Peptidase_M75        PF09375.5    288 sp|P0AB24|EFEO_ECOLI -            375   3.7e-51  174.1   5.4   1   1   9.9e-55   4.9e-51  173.7   5.4     1   288   135   368   135   368 0.95 Imelysin
Cupredoxin_1         PF13473.1    104 sp|P0AB24|EFEO_ECOLI -            375   3.5e-25   87.9   0.1   1   1   1.2e-28   5.8e-25   87.2   0.1     4   104    13   115    10   115 0.95 Cupredoxin-like domain
Lumazine_bd          PF12870.2    111 sp|P0AB24|EFEO_ECOLI -            375      0.38   10.8   2.5   2   2   0.00013      0.62   10.1   0.1    13    38   154   179   141   209 0.81 Lumazine-binding domain
GTP_EFTU             PF00009.22   188 sp|P0A6M8|EFG_ECOLI  -            704   2.7e-64  216.0   0.1   1   1   1.5e-67   4.5e-64  215.3   0.1     2   188     9   288     8   288 0.94 Elongation factor Tu GTP binding domain
EFG_IV               PF03764.13   120 sp|P0A6M8|EFG_ECOLI  -            704   5.9e-44  148.4   0.0   1   1   4.1e-47   1.2e-43  147.4   0.0     1   120   486   609   486   609 0.99 Elongation factor G, domain IV
EFG_II               PF14492.1     75 sp|P0A6M8|EFG_ECOLI  -            704   1.5e-34  117.6   0.0   1   1     1e-37   3.1e-34  116.6   0.0     1    75   411   485   411   485 0.99 Elongation Factor G, domain II
EFG_C                PF00679.19    89 sp|P0A6M8|EFG_ECOLI  -            704   5.1e-29   99.9   0.1   1   1   4.7e-32   1.4e-28   98.5   0.1     1    87   611   696   611   698 0.97 Elongation factor G C-terminus
GTP_EFTU_D2          PF03144.20    74 sp|P0A6M8|EFG_ECOLI  -            704   2.5e-15   56.3   0.2   1   1   2.4e-18     7e-15   54.9   0.2     1    74   331   398   331   398 0.94 Elongation factor Tu domain 2
Elong-fact-P_C       PF09285.6     56 sp|P0A6N8|EFPL_ECOLI -            190   1.1e-21   75.8   0.0   1   1   5.9e-25   2.9e-21   74.5   0.0     1    56   133   188   133   188 0.99 Elongation factor P, C-terminal
EFP                  PF01132.15    55 sp|P0A6N8|EFPL_ECOLI -            190   2.6e-14   52.6   2.2   1   1     1e-17     5e-14   51.7   2.2     1    54    69   124    69   125 0.91 Elongation factor P (EF-P) OB domain
EFP_N                PF08207.7     58 sp|P0A6N8|EFPL_ECOLI -            190   2.4e-13   49.7   0.1   1   1   1.1e-16   5.3e-13   48.6   0.1     2    57     4    61     3    62 0.88 Elongation factor P (EF-P) KOW-like domain
Elong-fact-P_C       PF09285.6     56 sp|P0A6N4|EFP_ECOLI  -            188   5.8e-27   92.8   1.0   2   2   2.4e-30   1.2e-26   91.8   0.3     1    56   131   186   131   186 0.99 Elongation factor P, C-terminal
EFP                  PF01132.15    55 sp|P0A6N4|EFP_ECOLI  -            188   3.5e-24   84.2   0.1   1   1   1.2e-27   5.9e-24   83.4   0.1     3    55    71   123    69   123 0.97 Elongation factor P (EF-P) OB domain
EFP_N                PF08207.7     58 sp|P0A6N4|EFP_ECOLI  -            188     6e-24   83.6   0.0   1   2   4.3e-27   2.1e-23   81.9   0.0     3    57     7    61     5    62 0.97 Elongation factor P (EF-P) KOW-like domain
EF_TS                PF00889.14   221 sp|P0A6P1|EFTS_ECOLI -            283   2.5e-71  239.5   5.7   1   2     5e-75   2.5e-71  239.5   5.7     1   221    57   263    57   263 0.98 Elongation factor TS
UBA                  PF00627.26    37 sp|P0A6P1|EFTS_ECOLI -            283   3.3e-11   42.6   0.1   1   2   4.7e-14   2.3e-10   39.9   0.2     1    35     4    39     4    40 0.96 UBA/TS-N domain
SMP_2                PF10144.4    210 sp|P0A6P1|EFTS_ECOLI -            283   0.00073   18.7   0.0   1   1   2.4e-07    0.0012   18.0   0.0    72   125    95   148    78   172 0.85 Bacterial virulence factor haemolysin
GTP_EFTU             PF00009.22   188 sp|P0CE47|EFTU1_ECOLI -            394     4e-60  202.4   0.0   1   1   2.6e-63   5.5e-60  202.0   0.0     1   187    10   201    10   202 0.93 Elongation factor Tu GTP binding domain
GTP_EFTU_D3          PF03143.12    99 sp|P0CE47|EFTU1_ECOLI -            394   2.2e-34  117.5   0.1   1   1   2.8e-37     6e-34  116.1   0.0     1    98   298   392   298   393 0.98 Elongation factor Tu C-terminal domain
GTP_EFTU_D2          PF03144.20    74 sp|P0CE47|EFTU1_ECOLI -            394   3.8e-18   65.3   6.3   1   1   3.2e-21   6.9e-18   64.5   5.6     1    74   225   294   225   294 0.96 Elongation factor Tu domain 2
GTP_EFTU_D4          PF14578.1     81 sp|P0CE47|EFTU1_ECOLI -            394   1.4e-05   24.5   1.9   1   1   6.8e-09   1.4e-05   24.5   1.9     8    79   214   293   209   294 0.89 Elongation factor Tu domain 4
MMR_HSR1             PF01926.18   116 sp|P0CE47|EFTU1_ECOLI -            394   4.2e-05   23.4   0.0   1   1   5.1e-08   0.00011   22.1   0.0     2   113    15   133    14   137 0.68 50S ribosome-binding GTPase
Miro                 PF08477.8    119 sp|P0CE47|EFTU1_ECOLI -            394    0.0042   17.5   0.0   1   1   3.6e-06    0.0077   16.7   0.0     2    87    15   112    14   139 0.83 Miro-like protein
AAA_29               PF13555.1     62 sp|P0CE47|EFTU1_ECOLI -            394     0.079   12.5   0.2   1   1   0.00011      0.24   10.9   0.0    29    48    18    40     3    53 0.75 P-loop containing region of AAA domain
GTP_EFTU             PF00009.22   188 sp|P0CE48|EFTU2_ECOLI -            394     4e-60  202.4   0.0   1   1   2.6e-63   5.5e-60  202.0   0.0     1   187    10   201    10   202 0.93 Elongation factor Tu GTP binding domain
GTP_EFTU_D3          PF03143.12    99 sp|P0CE48|EFTU2_ECOLI -            394   2.2e-34  117.5   0.1   1   1   2.8e-37     6e-34  116.1   0.0     1    98   298   392   298   393 0.98 Elongation factor Tu C-terminal domain
GTP_EFTU_D2          PF03144.20    74 sp|P0CE48|EFTU2_ECOLI -            394   3.8e-18   65.3   6.3   1   1   3.2e-21   6.9e-18   64.5   5.6     1    74   225   294   225   294 0.96 Elongation factor Tu domain 2
GTP_EFTU_D4          PF14578.1     81 sp|P0CE48|EFTU2_ECOLI -            394   1.4e-05   24.5   1.9   1   1   6.8e-09   1.4e-05   24.5   1.9     8    79   214   293   209   294 0.89 Elongation factor Tu domain 4
MMR_HSR1             PF01926.18   116 sp|P0CE48|EFTU2_ECOLI -            394   4.2e-05   23.4   0.0   1   1   5.1e-08   0.00011   22.1   0.0     2   113    15   133    14   137 0.68 50S ribosome-binding GTPase
Miro                 PF08477.8    119 sp|P0CE48|EFTU2_ECOLI -            394    0.0042   17.5   0.0   1   1   3.6e-06    0.0077   16.7   0.0     2    87    15   112    14   139 0.83 Miro-like protein
AAA_29               PF13555.1     62 sp|P0CE48|EFTU2_ECOLI -            394     0.079   12.5   0.2   1   1   0.00011      0.24   10.9   0.0    29    48    18    40     3    53 0.75 P-loop containing region of AAA domain
Peptidase_C48        PF02902.14   216 sp|Q47013|ELAD_ECOLI -            403   3.8e-34  118.1   1.1   1   1   3.8e-38   5.7e-34  117.6   1.1     2   215   165   362   164   363 0.96 Ulp1 protease family, C-terminal catalytic domain
Acetyltransf_7       PF13508.1     79 sp|P0AEH3|ELAA_ECOLI -            153     2e-14   53.5   0.0   1   1   1.1e-17   2.7e-14   53.0   0.0     2    78    47   130    46   131 0.85 Acetyltransferase (GNAT) domain
Acetyltransf_1       PF00583.19    83 sp|P0AEH3|ELAA_ECOLI -            153     1e-09   38.2   0.0   1   1   5.6e-13   1.4e-09   37.8   0.0     2    82    54   129    53   130 0.97 Acetyltransferase (GNAT) family
Acetyltransf_9       PF13527.1    127 sp|P0AEH3|ELAA_ECOLI -            153   1.5e-06   28.1   0.0   1   1   8.2e-10     2e-06   27.6   0.0     8   124    15   129     9   132 0.84 Acetyltransferase (GNAT) domain
Acetyltransf_10      PF13673.1    117 sp|P0AEH3|ELAA_ECOLI -            153    0.0003   20.9   0.0   1   1   2.4e-07   0.00059   19.9   0.0    44   117    48   129    33   129 0.81 Acetyltransferase (GNAT) domain
Acetyltransf_5       PF13444.1    101 sp|P0AEH3|ELAA_ECOLI -            153     0.013   16.0   0.1   1   1   3.7e-05     0.092   13.3   0.1     1    55    23    72    23   101 0.81 Acetyltransferase (GNAT) domain
Acetyltransf_CG      PF14542.1     78 sp|P0AEH3|ELAA_ECOLI -            153     0.033   14.0   0.0   1   1   2.6e-05     0.063   13.1   0.0    12    52    61   104    52   107 0.74 GCN5-related N-acetyl-transferase
DUF883               PF05957.8     94 sp|P0AEH5|ELAB_ECOLI -            101   1.3e-31  108.8   0.4   1   1   3.8e-35   1.4e-31  108.7   0.4     2    94     9   101     8   101 0.98 Bacterial protein of unknown function (DUF883)
YtxH                 PF12732.2     74 sp|P0AEH5|ELAB_ECOLI -            101    0.0047   17.2   8.9   2   2   3.7e-05      0.14   12.5   1.6     3    20    82    99    81   101 0.92 YtxH-like protein
DUF4449              PF14613.1    164 sp|P0AEH5|ELAB_ECOLI -            101     0.034   14.0   0.4   1   1   1.1e-05     0.039   13.8   0.4    35    88    17    71    14    82 0.82 Protein of unknown function (DUF4449)
DUF1895              PF08988.5     68 sp|P0AEH5|ELAB_ECOLI -            101     0.055   13.4   0.1   1   1   2.1e-05     0.078   13.0   0.1     4    47    21    67    19    73 0.78 Protein of unknown function (DUF1895)
DJ-1_PfpI            PF01965.19   147 sp|P0ABU5|ELBB_ECOLI -            217     6e-23   80.9   0.2   1   1   1.1e-26   8.1e-23   80.5   0.2     1   145    45   201    45   203 0.85 DJ-1/PfpI family
DUF4066              PF13278.1    166 sp|P0ABU5|ELBB_ECOLI -            217     0.019   14.2   0.0   1   1   5.1e-06     0.038   13.2   0.0    57   159    81   197    48   201 0.77 Putative amidotransferase
PapD_N               PF00345.15   122 sp|P75856|ELFD_ECOLI -            233   1.2e-36  125.2   0.0   1   1   2.2e-40   1.6e-36  124.7   0.0     1   122    31   149    31   149 0.93 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_C               PF02753.12    68 sp|P75856|ELFD_ECOLI -            233   3.1e-21   74.9   1.2   1   1   7.4e-25   5.5e-21   74.1   1.2     2    66   169   228   168   230 0.96 Pili assembly chaperone PapD, C-terminal domain
Fimbrial             PF00419.15   145 sp|P75858|ELFG_ECOLI -            356   5.5e-20   72.0   3.3   2   2   6.9e-23     1e-18   67.9   1.0     3   144   211   355   209   356 0.90 Fimbrial protein
Fimbrial             PF00419.15   145 sp|P75855|ELFA_ECOLI -            179   1.9e-14   54.0  14.8   1   1   4.7e-18   2.3e-14   53.8  14.8     1   144    32   178    32   179 0.86 Fimbrial protein
DUF4369              PF14289.1    106 sp|P75855|ELFA_ECOLI -            179   0.00022   21.2   2.7   2   2   7.5e-07    0.0037   17.2   1.1    38    90    82   138    58   169 0.82 Domain of unknown function (DUF4369)
Usher                PF00577.15   552 sp|P75857|ELFC_ECOLI -            866  1.1e-211  704.4  27.8   1   1  2.5e-215  1.3e-211  704.1  27.8     1   552   200   777   200   777 0.99 Outer membrane usher protein
PapC_N               PF13954.1    146 sp|P75857|ELFC_ECOLI -            866   7.8e-47  158.5   0.0   1   1   3.2e-50   1.6e-46  157.4   0.0     2   145    38   183    37   184 0.98 PapC N-terminal domain
PapC_C               PF13953.1     68 sp|P75857|ELFC_ECOLI -            866   9.3e-19   66.8   0.1   2   2   7.4e-22   3.6e-18   64.9   0.0     5    67   790   853   787   854 0.91 PapC C-terminal domain
HlyD                 PF00529.15   305 sp|P27303|EMRA_ECOLI -            390   1.4e-78  264.2  14.6   1   1   1.2e-81   1.8e-78  263.9  14.6     2   305    62   343    61   343 0.99 HlyD family secretion protein
HlyD_2               PF12700.2    328 sp|P27303|EMRA_ECOLI -            390   3.2e-17   62.7   1.2   1   1   3.1e-20   4.6e-17   62.1   1.2    20   234    60   290    51   316 0.77 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P27303|EMRA_ECOLI -            390   6.1e-16   58.6   3.2   1   2   0.00055      0.82   10.0   0.3     2    78    64   136    63   155 0.81 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P27303|EMRA_ECOLI -            390   6.1e-16   58.6   3.2   2   2   4.6e-16   6.9e-13   48.8   0.2     2   105   218   338   217   338 0.79 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P27303|EMRA_ECOLI -            390   1.2e-08   34.5   1.4   1   2   1.6e-10   2.3e-07   30.3   0.1     2    49    61   108    60   109 0.91 Biotin-lipoyl like
TPR_MLP1_2           PF07926.7    132 sp|P27303|EMRA_ECOLI -            390     0.001   18.8   0.4   1   1   8.2e-07    0.0012   18.5   0.4     3    90    99   191    97   331 0.84 TPR/MLP1/MLP2-like protein
Biotin_lipoyl        PF00364.17    74 sp|P27303|EMRA_ECOLI -            390    0.0022   17.6   0.0   1   2   3.6e-05     0.053   13.1   0.1    44    74    62    92    60    92 0.94 Biotin-requiring enzyme
MacB_PCD             PF12704.2    232 sp|P27303|EMRA_ECOLI -            390     0.016   14.8   0.4   1   1   2.5e-05     0.037   13.6   0.2     6   110    19   131    16   167 0.74 MacB-like periplasmic core domain
DUF912               PF06024.7    101 sp|P27303|EMRA_ECOLI -            390     0.034   14.1   1.0   1   2   6.9e-05       0.1   12.6   0.0    46    92     5    51     1    64 0.73 Nucleopolyhedrovirus protein of unknown function (DUF912)
DUF2776              PF10951.3    347 sp|P27303|EMRA_ECOLI -            390     0.039   13.0   0.0   1   1   3.9e-05     0.058   12.4   0.0   135   204     3    74     1    84 0.75 Protein of unknown function (DUF2776)
ATP-synt_DE          PF00401.15    48 sp|P27303|EMRA_ECOLI -            390       2.5    8.0   9.9   1   2   0.00017      0.26   11.2   1.6     3    24    92   114    90   140 0.73 ATP synthase, Delta/Epsilon chain, long alpha-helix domain
MFS_1                PF07690.11   352 sp|P0AEJ0|EMRB_ECOLI -            512   1.9e-53  181.4  37.9   1   2   3.8e-57   1.9e-53  181.4  37.9     1   351    19   413    19   414 0.88 Major Facilitator Superfamily
MFS_2                PF13347.1    428 sp|P0AEJ0|EMRB_ECOLI -            512    0.0022   16.4  10.2   1   3   4.4e-07    0.0022   16.4  10.2   261   338    50   125    10   129 0.85 MFS/sugar transport protein
OATP                 PF03137.15   539 sp|P0AEJ0|EMRB_ECOLI -            512     0.013   13.6  12.3   2   3   3.8e-06     0.019   13.0   0.5   140   204   101   165    95   170 0.91 Organic Anion Transporter Polypeptide (OATP) family
MFS_1                PF07690.11   352 sp|P31442|EMRD_ECOLI -            394   1.9e-39  135.3  45.9   1   2   6.4e-43   1.9e-39  135.3  45.9     2   350    14   349    13   352 0.82 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P31442|EMRD_ECOLI -            394   1.9e-39  135.3  45.9   2   2   0.00014       0.4    9.3  17.2    71   172   280   384   277   392 0.81 Major Facilitator Superfamily
MFS_3                PF05977.8    524 sp|P31442|EMRD_ECOLI -            394   7.3e-08   30.9   6.3   1   2   2.5e-11   7.3e-08   30.9   6.3    32   206    30   199     3   205 0.84 Transmembrane secretion effector
TRI12                PF06609.8    599 sp|P31442|EMRD_ECOLI -            394   2.6e-06   25.9   4.2   1   2   8.7e-10   2.6e-06   25.9   4.2    87   212    52   177    13   188 0.80 Fungal trichothecene efflux pump (TRI12)
MFS_2                PF13347.1    428 sp|P31442|EMRD_ECOLI -            394   4.7e-06   25.2  31.5   1   2   2.2e-05     0.066   11.6   5.6   227   331    10   112     5   120 0.91 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P31442|EMRD_ECOLI -            394   4.7e-06   25.2  31.5   2   2   2.1e-07   0.00061   18.2  18.5   133   338   122   322   114   385 0.80 MFS/sugar transport protein
DUF2530              PF10745.4     77 sp|P31442|EMRD_ECOLI -            394     0.022   14.7   3.1   1   2   8.7e-06     0.026   14.5   0.3    14    56    72   115    66   127 0.84 Protein of unknown function (DUF2530)
Multi_Drug_Res       PF00893.14    93 sp|P23895|EMRE_ECOLI -            110   2.1e-34  117.8   5.1   1   1     9e-38   2.7e-34  117.5   5.1     2    93     3    94     2    94 0.99 Small Multidrug Resistance protein
EmrE                 PF13536.1    113 sp|P23895|EMRE_ECOLI -            110     5e-07   29.9   9.8   1   1   2.1e-10   6.2e-07   29.6   9.8    36   106    31   103     7   107 0.85 Multidrug resistance efflux transporter
EamA                 PF00892.15   126 sp|P23895|EMRE_ECOLI -            110     2e-05   24.6   9.8   1   1   7.7e-09   2.3e-05   24.4   9.8    60   125    36   102     4   103 0.89 EamA-like transporter family
UPF0060              PF02694.10   107 sp|P23895|EMRE_ECOLI -            110     0.016   15.2   5.6   1   1   7.1e-06     0.021   14.8   5.6    11   103    10   103     3   107 0.78 Uncharacterised BCR, YnfA/UPF0060 family
TPT                  PF03151.11   153 sp|P23895|EMRE_ECOLI -            110      0.02   14.5   5.0   1   1   9.3e-06     0.028   14.0   4.9    98   149    43    99    16   102 0.78 Triose-phosphate Transporter family
MFS_1                PF07690.11   352 sp|P52600|EMRY_ECOLI -            512   1.1e-51  175.6  37.9   1   2   2.3e-55   1.1e-51  175.6  37.9     1   351    23   417    23   418 0.88 Major Facilitator Superfamily
TRI12                PF06609.8    599 sp|P52600|EMRY_ECOLI -            512   5.8e-07   28.0  14.2   1   2   1.2e-10   5.8e-07   28.0  14.2    57   320    31   283    15   317 0.77 Fungal trichothecene efflux pump (TRI12)
HlyD                 PF00529.15   305 sp|P52599|EMRK_ECOLI -            387   2.9e-79  266.5   9.6   1   1   1.4e-82   3.3e-79  266.3   9.6     3   304    56   335    54   336 0.99 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P52599|EMRK_ECOLI -            387   2.9e-17   62.9   2.5   1   2   0.00028       0.7   10.2   0.3     2    70    57   124    56   142 0.70 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P52599|EMRK_ECOLI -            387   2.9e-17   62.9   2.5   2   2   2.7e-17   6.7e-14   52.1   0.1     2    98   211   324   210   331 0.77 HlyD family secretion protein
HlyD_2               PF12700.2    328 sp|P52599|EMRK_ECOLI -            387   1.1e-15   57.6   5.3   1   1   6.1e-19   1.5e-15   57.2   5.3    19   239    52   288    38   322 0.82 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P52599|EMRK_ECOLI -            387   1.9e-13   49.8   0.9   1   2   5.1e-11   1.3e-07   31.2   0.2     4    50    56   102    54   102 0.97 Biotin-lipoyl like
Biotin_lipoyl_2      PF13533.1     50 sp|P52599|EMRK_ECOLI -            387   1.9e-13   49.8   0.9   2   2   2.4e-06    0.0059   16.2   0.0     4    43   210   249   207   256 0.88 Biotin-lipoyl like
Biotin_lipoyl        PF00364.17    74 sp|P52599|EMRK_ECOLI -            387   4.6e-05   22.9   0.1   2   2   2.8e-05      0.07   12.7   0.0    44    73   209   238   207   239 0.90 Biotin-requiring enzyme
UPF0556              PF10572.4    158 sp|P52599|EMRK_ECOLI -            387     0.083   12.0   0.1   1   1   7.7e-05      0.19   10.9   0.1    78   126   103   147    87   175 0.75 Uncharacterised protein family UPF0556
SLT                  PF01464.15   121 sp|P0C960|EMTA_ECOLI -            203   1.5e-25   89.0   0.1   1   1     4e-29     2e-25   88.6   0.1     3   120    43   168    41   169 0.95 Transglycosylase SLT domain
SLT_2                PF13406.1    262 sp|P0C960|EMTA_ECOLI -            203     0.086   11.7   0.0   1   1   2.3e-05      0.11   11.3   0.0    70   100    36    66    20   106 0.84 Transglycosylase SLT domain
DEP                  PF00610.16    74 sp|P0C960|EMTA_ECOLI -            203      0.14   11.8   0.0   1   1   4.5e-05      0.22   11.2   0.0    33    73   156   195   152   196 0.81 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
Endonuclease_1       PF04231.8    218 sp|P25736|END1_ECOLI -            235   7.3e-79  264.6   6.5   1   1   5.8e-83   8.6e-79  264.3   6.5    34   218    39   230    20   230 0.94 Endonuclease I
HhH-GPD              PF00730.20   108 sp|P0AB83|END3_ECOLI -            211   3.6e-19   69.0   0.0   1   1   1.1e-22   5.2e-19   68.5   0.0     1   107    34   168    34   169 0.95 HhH-GPD superfamily base excision DNA repair protein
HHH                  PF00633.18    30 sp|P0AB83|END3_ECOLI -            211   6.5e-08   31.8   0.0   1   1   3.1e-11   1.6e-07   30.6   0.0     2    29   100   127    99   128 0.94 Helix-hairpin-helix motif
EndIII_4Fe-2S        PF10576.4     17 sp|P0AB83|END3_ECOLI -            211    0.0001   22.2   3.3   1   1   3.7e-08   0.00018   21.5   3.3     1    17   187   203   187   203 0.99 Iron-sulfur binding domain of endonuclease III
AP_endonuc_2         PF01261.19   213 sp|P0A6C1|END4_ECOLI -            285   6.7e-40  136.6   0.3   1   1   1.2e-43   9.2e-40  136.1   0.3     3   213    20   239    19   239 0.94 Xylose isomerase-like TIM barrel
Flagellin_IN         PF07196.8     56 sp|P0A6C1|END4_ECOLI -            285     0.012   15.6   0.0   1   1   3.5e-06     0.026   14.5   0.0    18    48   118   152   113   157 0.82 Flagellin hook IN motif
H2TH                 PF06831.9     93 sp|P50465|END8_ECOLI -            263   3.7e-18   65.0   0.0   1   1   2.3e-21     7e-18   64.1   0.0     1    77   126   205   126   215 0.85 Formamidopyrimidine-DNA glycosylase H2TH domain
Fapy_DNA_glyco       PF01149.19   116 sp|P50465|END8_ECOLI -            263   7.8e-15   55.2   0.0   1   1   4.6e-18   1.4e-14   54.4   0.0     1   106     2   104     2   111 0.90 Formamidopyrimidine-DNA glycosylase N-terminal domain
zf-FPG_IleRS         PF06827.9     30 sp|P50465|END8_ECOLI -            263   1.6e-07   30.8   3.6   1   1   9.4e-11   2.8e-07   30.0   3.6     1    29   235   263   235   263 0.98 Zinc finger found in FPG and IleRS
DUF4351              PF14261.1     59 sp|P50465|END8_ECOLI -            263     0.087   12.6   0.2   1   1   0.00011      0.34   10.8   0.0    30    49   186   205   181   209 0.87 Domain of unknown function (DUF4351)
Zn_Tnp_IS1595        PF12760.2     46 sp|P50465|END8_ECOLI -            263      0.17   11.7   1.7   1   1   9.5e-05      0.28   11.0   1.7    16    45   233   263   217   263 0.87 Transposase zinc-ribbon domain
MMR_HSR1             PF01926.18   116 sp|P0A6P7|ENGB_ECOLI -            210   5.4e-18   65.0   0.0   1   1   4.9e-21     8e-18   64.4   0.0     1   116    28   146    28   146 0.87 50S ribosome-binding GTPase
FeoB_N               PF02421.13   156 sp|P0A6P7|ENGB_ECOLI -            210   7.9e-06   25.2   0.0   1   1   7.2e-09   1.2e-05   24.6   0.0     1   155    27   192    27   193 0.72 Ferrous iron transport protein B
GTP_EFTU             PF00009.22   188 sp|P0A6P7|ENGB_ECOLI -            210   3.8e-05   23.2   0.1   2   2   6.6e-07    0.0011   18.4   0.1    93   185   108   196    99   199 0.87 Elongation factor Tu GTP binding domain
DUF258               PF03193.11   161 sp|P0A6P7|ENGB_ECOLI -            210   9.7e-05   21.6   0.0   1   2   1.7e-07   0.00028   20.1   0.0    38   111    29    96     2   108 0.80 Protein of unknown function, DUF258
Dynamin_N            PF00350.18   168 sp|P0A6P7|ENGB_ECOLI -            210   0.00013   21.8   0.0   1   2   0.00013      0.21   11.4   0.1     1    28    29    56    29    67 0.85 Dynamin family
SRPRB                PF09439.5    181 sp|P0A6P7|ENGB_ECOLI -            210     0.019   14.1   0.0   1   1   3.1e-05     0.051   12.8   0.0     6    84    29   117    25   128 0.67 Signal recognition particle receptor beta subunit
PGM_PMM_I            PF02878.11   138 sp|P0A6P7|ENGB_ECOLI -            210      0.09   12.2   0.0   1   1   9.1e-05      0.15   11.5   0.0    20    73    89   142    82   156 0.91 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
Enolase_C            PF00113.17   296 sp|P0A6P9|ENO_ECOLI  -            432  1.5e-140  467.2   3.9   1   1  5.3e-144    2e-140  466.9   3.9     2   294   144   429   143   431 0.98 Enolase, C-terminal TIM barrel domain
Enolase_N            PF03952.11   132 sp|P0A6P9|ENO_ECOLI  -            432   4.6e-60  201.3   0.8   1   1   2.9e-63   1.1e-59  200.1   0.8     1   132     3   134     3   134 0.99 Enolase, N-terminal domain
MAAL_C               PF07476.6    249 sp|P0A6P9|ENO_ECOLI  -            432   0.00055   18.9   0.3   2   2     5e-07    0.0018   17.2   0.1   136   217   308   390   266   396 0.83 Methylaspartate ammonia-lyase C-terminus
MR_MLE_C             PF13378.1    111 sp|P0A6P9|ENO_ECOLI  -            432    0.0017   18.3   0.8   2   2     2e-06    0.0075   16.2   0.0    10    73   327   394   320   426 0.77 Enolase C-terminal domain-like
adh_short_C2         PF13561.1    241 sp|P15047|ENTA_ECOLI -            248   3.9e-28   98.8   0.1   1   1   2.7e-31   4.9e-28   98.5   0.1     3   240    14   244    12   245 0.92 Enoyl-(Acyl carrier protein) reductase
adh_short            PF00106.20   167 sp|P15047|ENTA_ECOLI -            248   2.6e-27   95.7   9.7   1   1   1.4e-29   2.5e-26   92.5   9.7     2   164     7   160     6   163 0.88 short chain dehydrogenase
KR                   PF08659.5    181 sp|P15047|ENTA_ECOLI -            248     3e-11   43.3   8.8   1   1   2.8e-13   5.1e-10   39.2   8.2    56   160    47   155     7   161 0.90 KR domain
Epimerase            PF01370.16   236 sp|P15047|ENTA_ECOLI -            248    0.0016   17.9   0.1   1   1   5.6e-06      0.01   15.2   0.1     2   180     9   181     8   188 0.71 NAD dependent epimerase/dehydratase family
DFP                  PF04127.10   185 sp|P15047|ENTA_ECOLI -            248    0.0052   16.4   1.4   1   1   4.2e-06    0.0077   15.8   1.4    31    92    17    82    11   156 0.85 DNA / pantothenate metabolism flavoprotein
2-Hacid_dh_C         PF02826.14   178 sp|P15047|ENTA_ECOLI -            248     0.011   14.9   0.0   1   1     9e-06     0.017   14.3   0.0    34   118     3    86     1    91 0.86 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
NAD_binding_7        PF13241.1    103 sp|P15047|ENTA_ECOLI -            248     0.018   15.2   0.0   1   1     3e-05     0.055   13.7   0.0     3    58     1    56     1   103 0.75 Putative NAD(P)-binding
Eno-Rase_NADH_b      PF12242.3     78 sp|P15047|ENTA_ECOLI -            248     0.022   14.5   0.3   1   1   2.8e-05     0.052   13.3   0.3    38    69     5    34     1    40 0.84 NAD(P)H binding domain of trans-2-enoyl-CoA reductase
Isochorismatase      PF00857.15   174 sp|P0ADI4|ENTB_ECOLI -            285   6.5e-38  130.3   0.0   1   1   1.1e-41   8.2e-38  130.0   0.0     2   173    32   204    31   205 0.97 Isochorismatase family
PP-binding           PF00550.20    67 sp|P0ADI4|ENTB_ECOLI -            285   2.4e-08   34.1   0.0   1   1   8.3e-12   6.1e-08   32.8   0.0     2    62   217   275   216   280 0.86 Phosphopantetheine attachment site
ACPS                 PF01648.15   115 sp|P19925|ENTD_ECOLI -            206   4.2e-12   45.8   1.2   3   3   1.6e-14   1.2e-10   41.1   0.2     1    72   103   179   103   199 0.77 4'-phosphopantetheinyl transferase superfamily
Peptidase_C39        PF03412.10   131 sp|P19925|ENTD_ECOLI -            206     0.045   13.5   0.1   1   1   1.4e-05      0.11   12.3   0.1    48    99   144   200   125   202 0.87 Peptidase C39 family
Chorismate_bind      PF00425.13   257 sp|P0AEJ2|ENTC_ECOLI -            391   2.1e-68  230.4   0.0   1   1   3.5e-72   2.6e-68  230.1   0.0     2   257   126   380   125   380 0.97 chorismate binding enzyme
FAM195               PF14799.1    100 sp|P0AEJ2|ENTC_ECOLI -            391      0.31   10.9   1.8   1   2   6.6e-05      0.49   10.2   0.3    41    82    89   130    87   132 0.90 FAM195 family
AMP-binding          PF00501.23   417 sp|P11454|ENTF_ECOLI -           1293  2.7e-105  352.1   0.0   1   1  2.4e-108  3.6e-105  351.7   0.0     2   417   462   863   461   863 0.87 AMP-binding enzyme
Condensation         PF00668.15   301 sp|P11454|ENTF_ECOLI -           1293   2.8e-60  203.7   0.0   1   1   2.9e-63   4.3e-60  203.1   0.0     2   300     2   300     1   301 0.91 Condensation domain
Thioesterase         PF00975.15   229 sp|P11454|ENTF_ECOLI -           1293   3.7e-46  158.1   0.6   2   2   2.4e-46   3.5e-43  148.4   0.1     2   219  1067  1277  1066  1290 0.95 Thioesterase domain
AMP-binding_C        PF13193.1     73 sp|P11454|ENTF_ECOLI -           1293   3.2e-11   44.0   0.1   1   1   7.1e-14     1e-10   42.3   0.1     1    73   871   952   871   952 0.84 AMP-binding enzyme C-terminal domain
PP-binding           PF00550.20    67 sp|P11454|ENTF_ECOLI -           1293   2.3e-09   37.3   0.1   1   1   4.9e-12   7.3e-09   35.7   0.1     3    65   980  1040   978  1042 0.90 Phosphopantetheine attachment site
Abhydrolase_6        PF12697.2    228 sp|P11454|ENTF_ECOLI -           1293   1.3e-05   25.1   0.1   3   3   8.9e-09   1.3e-05   25.1   0.1     2   109  1069  1198  1068  1267 0.66 Alpha/beta hydrolase family
Abhydrolase_5        PF12695.2    145 sp|P11454|ENTF_ECOLI -           1293   0.00073   19.3   0.0   2   2   3.5e-06    0.0051   16.5   0.0     6   104  1072  1178  1067  1225 0.69 Alpha/beta hydrolase family
Lipase_3             PF01764.20   141 sp|P11454|ENTF_ECOLI -           1293     0.028   14.0   0.0   1   1   4.4e-05     0.066   12.8   0.0    45    91  1111  1157  1097  1172 0.87 Lipase (class 3)
Abhydrolase_3        PF07859.8    211 sp|P11454|ENTF_ECOLI -           1293     0.061   12.8   0.4   1   1   0.00011      0.16   11.5   0.0    59   126  1123  1180  1104  1227 0.66 alpha/beta hydrolase fold
Abhydrolase_1        PF00561.15   230 sp|P11454|ENTF_ECOLI -           1293      0.14   11.6   0.0   1   1   0.00019      0.28   10.6   0.0    29    92  1114  1194  1090  1257 0.63 alpha/beta hydrolase fold
AMP-binding          PF00501.23   417 sp|P10378|ENTE_ECOLI -            536     3e-79  266.3   0.0   1   1     1e-82   3.7e-79  266.0   0.0     5   416    35   437    31   438 0.81 AMP-binding enzyme
AMP-binding_C        PF13193.1     73 sp|P10378|ENTE_ECOLI -            536     4e-13   50.1   0.6   1   1   5.3e-16     2e-12   47.8   0.1     1    73   446   520   446   520 0.94 AMP-binding enzyme C-terminal domain
GH3                  PF03321.8    529 sp|P10378|ENTE_ECOLI -            536   0.00021   19.9   0.0   1   3   1.6e-06    0.0058   15.2   0.0    79   106   181   207   162   227 0.86 GH3 auxin-responsive promoter
Autoind_bind         PF03472.10   149 sp|P10378|ENTE_ECOLI -            536     0.081   12.2   0.0   1   1   4.3e-05      0.16   11.2   0.0    39   102     5    73     2    92 0.72 Autoinducer binding domain
4HBT                 PF03061.17    79 sp|P0A8Y8|ENTH_ECOLI -            137   8.1e-17   61.1   0.1   1   1   1.8e-20   1.3e-16   60.4   0.1     1    79    50   127    50   127 0.98 Thioesterase superfamily
DUF4442              PF14539.1    132 sp|P0A8Y8|ENTH_ECOLI -            137    0.0051   16.7   0.0   1   1   8.1e-07     0.006   16.5   0.0    15   123    20   126    13   135 0.82 Domain of unknown function (DUF4442)
MFS_1                PF07690.11   352 sp|P24077|ENTS_ECOLI -            416   2.3e-24   85.8  60.3   1   2     1e-19   7.7e-16   57.7  26.6     1   221    22   235    22   242 0.81 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P24077|ENTS_ECOLI -            416   2.3e-24   85.8  60.3   2   2   2.9e-12   2.2e-08   33.2  27.9    10   175   237   401   233   415 0.76 Major Facilitator Superfamily
MFS_3                PF05977.8    524 sp|P24077|ENTS_ECOLI -            416   4.9e-21   74.4  33.8   1   1   8.4e-25   6.2e-21   74.1  33.8     9   397    16   403    12   414 0.89 Transmembrane secretion effector
Peptidase_M23        PF01551.17    96 sp|P37690|ENVC_ECOLI -            419   2.4e-25   88.4   0.2   1   1   5.4e-28   5.4e-25   87.2   0.2     3    96   320   413   319   413 0.98 Peptidase family M23
IncA                 PF04156.9    191 sp|P37690|ENVC_ECOLI -            419     0.002   17.7  15.3   1   2   2.1e-06     0.002   17.7  15.3    48   171    17   122    14   131 0.83 IncA protein
Reo_sigmaC           PF04582.7    326 sp|P37690|ENVC_ECOLI -            419    0.0026   17.0  13.1   1   2   2.1e-05     0.021   14.0   4.5    34   116    37   119    27   138 0.91 Reovirus sigma C capsid protein
Pex24p               PF06398.6    359 sp|P37690|ENVC_ECOLI -            419      0.19   10.4   0.0   1   1   0.00019      0.19   10.4   0.0    65   145    16   109    10   119 0.69 Integral peroxisomal membrane peroxin
PEARLI-4             PF05278.7    269 sp|P37690|ENVC_ECOLI -            419      0.39   10.0  16.7   1   2   0.00013      0.13   11.6   4.5   186   254    38   106    26   117 0.85 Arabidopsis phospholipase-like protein (PEARLI 4)
Fib_alpha            PF08702.5    146 sp|P37690|ENVC_ECOLI -            419      0.44   10.6  27.0   1   2   0.00049      0.49   10.5  10.5    57   132    38   115    29   117 0.75 Fibrinogen alpha/beta chain family
Halogen_Hydrol       PF10112.4    199 sp|P37690|ENVC_ECOLI -            419       1.8    7.9  15.4   1   3   0.00067      0.66    9.3   2.8   146   179    66    99    62   117 0.90 5-bromo-4-chloroindolyl phosphate hydrolysis protein
TMF_DNA_bd           PF12329.3     74 sp|P37690|ENVC_ECOLI -            419         6    6.7  51.7   1   3   6.4e-05     0.063   13.0  20.0     1    73    41   113    41   114 0.96 TATA element modulatory factor 1 DNA binding
Laminin_II           PF06009.7    138 sp|P37690|ENVC_ECOLI -            419       7.7    6.2  27.3   1   2   2.3e-05     0.022   14.4   7.9    11    67    53   109    37   123 0.83 Laminin Domain II
tRNA-synt_2          PF00152.15   335 sp|P0A8N7|EPMA_ECOLI -            325   5.5e-70  235.7   0.0   1   1   1.4e-73     7e-70  235.4   0.0    21   333    15   323     6   325 0.88 tRNA synthetases class II (D, K and N)
Transgly             PF00912.17   178 sp|P0A8N7|EPMA_ECOLI -            325      0.09   12.0   0.0   1   2   9.8e-05      0.49    9.6   0.0    13    44     4    35     1    52 0.88 Transglycosylase
Radical_SAM          PF04055.16   166 sp|P39280|EPMB_ECOLI -            342   4.7e-08   33.3   0.0   1   1   2.4e-11   1.2e-07   32.0   0.0     5    74   118   201   115   270 0.69 Radical SAM superfamily
Fer4_14              PF13394.1    119 sp|P39280|EPMB_ECOLI -            342   1.5e-06   28.2   0.0   1   1   7.6e-10   3.7e-06   26.9   0.0     6    96   118   204   114   225 0.71 4Fe-4S single cluster domain
Fer4_12              PF13353.1    139 sp|P39280|EPMB_ECOLI -            342   1.5e-05   25.1   0.0   1   2   9.3e-09   4.6e-05   23.5   0.0     8    68   112   172   104   191 0.72 4Fe-4S single cluster domain
DUF462               PF04315.7    165 sp|P76938|EPMC_ECOLI -            182   1.5e-77  258.6   0.1   1   1   1.2e-81   1.7e-77  258.4   0.1     1   163    13   176    13   178 0.99 Protein of unknown function, DUF462
Sulfatase            PF00884.18   308 sp|P37661|EPTB_ECOLI -            563   8.8e-50  169.6   0.1   1   1   2.2e-53   1.1e-49  169.3   0.1     3   308   250   538   248   538 0.89 Sulfatase
DUF1705              PF08019.7    156 sp|P37661|EPTB_ECOLI -            563   8.9e-13   48.0   7.4   1   1   1.8e-16   8.9e-13   48.0   7.4     2   112    58   169    54   180 0.78 Domain of unknown function (DUF1705)
Sulfatase            PF00884.18   308 sp|P0CB39|EPTC_ECOLI -            577   7.5e-47  160.0   5.7   1   1   1.4e-50     1e-46  159.5   5.7     2   308   238   530   237   530 0.95 Sulfatase
DUF1705              PF08019.7    156 sp|P0CB39|EPTC_ECOLI -            577   5.4e-05   22.7   7.5   2   2   7.3e-09   5.4e-05   22.7   7.5    11   149    59   206    50   211 0.60 Domain of unknown function (DUF1705)
Sulfatase            PF00884.18   308 sp|P30845|EPTA_ECOLI -            547   9.5e-54  182.6   0.3   1   1   3.3e-57   1.2e-53  182.3   0.3     3   308   238   527   236   527 0.94 Sulfatase
DUF1705              PF08019.7    156 sp|P30845|EPTA_ECOLI -            547   3.6e-45  153.2   9.4   1   1   9.6e-49   3.6e-45  153.2   9.4     2   154    58   211    57   213 0.97 Domain of unknown function (DUF1705)
Phosphodiest         PF01663.17   365 sp|P30845|EPTA_ECOLI -            547     0.066   12.5   0.0   1   1   2.8e-05       0.1   11.8   0.0   209   275   422   481   377   531 0.75 Type I phosphodiesterase / nucleotide pyrophosphatase
MMR_HSR1             PF01926.18   116 sp|P06616|ERA_ECOLI  -            301     2e-22   79.3   0.1   1   1     5e-25   3.5e-22   78.5   0.1     2   116    11   125    10   125 0.84 50S ribosome-binding GTPase
KH_2                 PF07650.12    78 sp|P06616|ERA_ECOLI  -            301   2.2e-18   65.5   0.7   1   1   8.8e-21   6.2e-18   64.1   0.7     1    77   209   285   209   286 0.94 KH domain
FeoB_N               PF02421.13   156 sp|P06616|ERA_ECOLI  -            301   4.8e-14   51.9   0.2   1   1   1.1e-16   7.5e-14   51.2   0.2     3   153    11   166    10   169 0.84 Ferrous iron transport protein B
GTP_EFTU             PF00009.22   188 sp|P06616|ERA_ECOLI  -            301   2.4e-10   40.1   0.8   1   1   1.6e-11   1.1e-08   34.6   0.8     6   187    11   174     9   175 0.68 Elongation factor Tu GTP binding domain
Dynamin_N            PF00350.18   168 sp|P06616|ERA_ECOLI  -            301   9.2e-08   32.0   0.1   1   2   7.4e-08   5.2e-05   23.1   0.2     1    35    11    45    11    57 0.84 Dynamin family
AIG1                 PF04548.11   212 sp|P06616|ERA_ECOLI  -            301   5.1e-07   29.0   0.0   1   1   1.3e-09   9.1e-07   28.1   0.0     3   109    11   114    10   117 0.74 AIG1 family
PduV-EutP            PF10662.4    143 sp|P06616|ERA_ECOLI  -            301   9.9e-07   28.3   0.3   1   1   1.8e-08   1.3e-05   24.7   0.3     4   141    11   169     9   171 0.72 Ethanolamine utilisation - propanediol utilisation
Miro                 PF08477.8    119 sp|P06616|ERA_ECOLI  -            301   1.7e-05   25.3   0.0   1   1   6.2e-08   4.4e-05   23.9   0.0     2   119    11   127    11   127 0.63 Miro-like protein
DUF258               PF03193.11   161 sp|P06616|ERA_ECOLI  -            301   0.00015   20.9   0.0   1   1     4e-07   0.00028   20.1   0.0    38    99    11    68     6    83 0.68 Protein of unknown function, DUF258
AAA_22               PF13401.1    131 sp|P06616|ERA_ECOLI  -            301   0.00019   21.5   0.0   1   1   5.2e-07   0.00036   20.6   0.0     3   113     7   147     4   163 0.76 AAA domain
Ras                  PF00071.17   162 sp|P06616|ERA_ECOLI  -            301   0.00088   18.6   0.1   1   2     7e-05     0.049   13.0   0.0     3   153    12   166    11   174 0.73 Ras family
MobB                 PF03205.9    140 sp|P06616|ERA_ECOLI  -            301    0.0031   17.2   0.4   1   1   1.7e-05     0.012   15.2   0.1     3   113    11   111    10   137 0.63 Molybdopterin guanine dinucleotide synthesis protein B
AAA_25               PF13481.1    194 sp|P06616|ERA_ECOLI  -            301    0.0078   15.6   0.0   1   1   1.6e-05     0.012   15.0   0.0    34    86     9    59     6   129 0.77 AAA domain
AAA_17               PF13207.1    121 sp|P06616|ERA_ECOLI  -            301     0.013   16.3   0.1   1   1   4.2e-05     0.029   15.1   0.1     2    19    11    28    10   113 0.81 AAA domain
SRPRB                PF09439.5    181 sp|P06616|ERA_ECOLI  -            301     0.017   14.3   0.1   1   1   4.6e-05     0.033   13.4   0.1     6    86    11    99     6   134 0.71 Signal recognition particle receptor beta subunit
AAA_18               PF13238.1    129 sp|P06616|ERA_ECOLI  -            301     0.018   15.3   0.1   1   1     5e-05     0.035   14.4   0.1     1    19    11    30    11   113 0.80 AAA domain
AAA_10               PF12846.2    304 sp|P06616|ERA_ECOLI  -            301     0.037   13.4   0.0   1   1   7.4e-05     0.052   12.9   0.0     4    43    11    58     9   221 0.68 AAA-like domain
AAA_14               PF13173.1    128 sp|P06616|ERA_ECOLI  -            301     0.048   13.5   0.2   1   1   0.00032      0.22   11.4   0.1     4    27    10    33     8    85 0.83 AAA domain
ABC_tran             PF00005.22   137 sp|P06616|ERA_ECOLI  -            301     0.063   13.5   0.3   1   1   0.00021      0.15   12.3   0.2    14    37    11    34     2    80 0.85 ABC transporter
NB-ARC               PF00931.17   287 sp|P06616|ERA_ECOLI  -            301       0.1   11.4   0.0   1   2   0.00085       0.6    8.9   0.0    19    45     8    35     1    61 0.85 NB-ARC domain
YkuD                 PF03734.9    144 sp|P39176|ERFK_ECOLI -            310   4.7e-20   72.3   0.1   1   1   4.9e-24   7.3e-20   71.7   0.1     2   144    96   230    95   230 0.81 L,D-transpeptidase catalytic domain
Fe-S_biosyn          PF01521.15   112 sp|P0ACC3|ERPA_ECOLI -            114   2.1e-20   72.7   0.0   1   1   1.6e-24   2.3e-20   72.5   0.0     3   111     9   109     7   110 0.95 Iron-sulphur cluster biosynthesis
Lysis_S              PF04971.7     68 sp|P0A9R2|ESSD_ECOLI -             71   2.7e-47  158.3   0.6   1   1     2e-51     3e-47  158.1   0.6     1    68     4    71     4    71 1.00 Lysis protein S
Lysis_S              PF04971.7     68 sp|P77237|ESSQ_ECOLI -             71   2.1e-46  155.4   0.4   1   1   1.5e-50   2.3e-46  155.3   0.4     1    68     4    71     4    71 1.00 Lysis protein S
LMWPc                PF01451.16   138 sp|P0ACZ2|ETP_ECOLI  -            148   4.5e-43  146.8   0.0   1   1   3.4e-47   5.1e-43  146.7   0.0     1   138     9   143     9   143 0.98 Low molecular weight phosphotyrosine protein phosphatase
Wzz                  PF02706.10   152 sp|P38134|ETK_ECOLI  -            726   1.5e-52  177.4   2.5   1   2   3.6e-55   4.1e-52  176.0   0.2     1   152    16   252    16   252 0.99 Chain length determinant protein
GNVR                 PF13807.1     82 sp|P38134|ETK_ECOLI  -            726   8.9e-34  115.1   2.4   1   1   1.5e-36   1.7e-33  114.2   0.4     1    82   367   448   367   448 0.98 G-rich domain on putative tyrosine kinase
AAA_31               PF13614.1    157 sp|P38134|ETK_ECOLI  -            726   2.1e-21   76.5   0.0   1   1   3.9e-24   4.4e-21   75.4   0.0     2   148   533   671   532   675 0.91 AAA domain
CbiA                 PF01656.18   195 sp|P38134|ETK_ECOLI  -            726   1.2e-09   37.9   0.0   1   1   2.5e-12   2.8e-09   36.6   0.0     2   110   535   656   534   712 0.67 CobQ/CobB/MinD/ParA nucleotide binding domain
AAA_26               PF13500.1    199 sp|P38134|ETK_ECOLI  -            726     6e-08   32.5   0.4   1   2   1.7e-05      0.02   14.5   0.0     3    33   534   564   532   567 0.89 AAA domain
AAA_26               PF13500.1    199 sp|P38134|ETK_ECOLI  -            726     6e-08   32.5   0.4   2   2   1.4e-05     0.016   14.8   0.1   133   170   668   705   657   716 0.91 AAA domain
AAA_25               PF13481.1    194 sp|P38134|ETK_ECOLI  -            726   0.00052   19.4   0.0   1   1     2e-06    0.0023   17.3   0.0    35   150   534   648   524   652 0.69 AAA domain
KTI12                PF08433.5    270 sp|P38134|ETK_ECOLI  -            726     0.016   14.4   2.0   2   2   7.4e-05     0.085   12.0   0.0     4    51   534   583   532   591 0.80 Chromatin associated protein KTI12
SRP54                PF00448.17   196 sp|P38134|ETK_ECOLI  -            726      0.04   13.3   0.0   2   3   0.00087      0.99    8.8   0.0     2    41   532   572   531   612 0.84 SRP54-type protein, GTPase domain
Tup_N                PF08581.5     79 sp|P38134|ETK_ECOLI  -            726      0.14   12.3   5.1   1   1   0.00041      0.47   10.6   5.1     6    77   276   349   272   351 0.89 Tup N-terminal
ABC_tran             PF00005.22   137 sp|P0A9W3|ETTA_ECOLI -            555   1.8e-60  203.1   0.2   1   2   2.6e-35   1.2e-32  113.1   0.0     1   137    22   191    22   191 0.98 ABC transporter
ABC_tran             PF00005.22   137 sp|P0A9W3|ETTA_ECOLI -            555   1.8e-60  203.1   0.2   2   2     3e-27   1.4e-24   86.9   0.0     2   137   340   473   339   473 0.83 ABC transporter
AAA_21               PF13304.1    303 sp|P0A9W3|ETTA_ECOLI -            555   3.5e-20   73.1   0.2   1   4   2.6e-05     0.012   15.6   0.0     4    39    37    61    35    92 0.71 AAA domain
AAA_21               PF13304.1    303 sp|P0A9W3|ETTA_ECOLI -            555   3.5e-20   73.1   0.2   2   4   4.7e-09   2.1e-06   27.9   0.0   234   303   160   223   104   223 0.94 AAA domain
AAA_21               PF13304.1    303 sp|P0A9W3|ETTA_ECOLI -            555   3.5e-20   73.1   0.2   3   4   2.4e-06    0.0011   19.0   0.1     3    21   353   371   351   388 0.87 AAA domain
ABC_tran_2           PF12848.2     85 sp|P0A9W3|ETTA_ECOLI -            555   1.2e-13   50.7   7.5   1   2   2.3e-14     1e-11   44.4   3.3     1    78   230   305   230   312 0.89 ABC transporter
SMC_N                PF02463.14   220 sp|P0A9W3|ETTA_ECOLI -            555   2.2e-07   30.3   1.0   2   4    0.0016      0.74    8.9   0.0   127   202   153   222    77   229 0.78 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|P0A9W3|ETTA_ECOLI -            555   2.2e-07   30.3   1.0   3   4   0.00052      0.24   10.6   0.1    25    44   350   369   322   372 0.69 RecF/RecN/SMC N terminal domain
AAA_25               PF13481.1    194 sp|P0A9W3|ETTA_ECOLI -            555     5e-07   29.3   0.7   1   3   0.00018     0.081   12.3   0.2    12   137     8   151     4   215 0.75 AAA domain
AAA_23               PF13476.1    202 sp|P0A9W3|ETTA_ECOLI -            555   9.3e-07   29.3   6.1   1   2    0.0019      0.87    9.8   0.2    22    37    35    50    19    55 0.74 AAA domain
AAA_23               PF13476.1    202 sp|P0A9W3|ETTA_ECOLI -            555   9.3e-07   29.3   6.1   2   2   1.4e-06   0.00065   20.0   0.1    11    39   340   369   324   371 0.78 AAA domain
AAA_29               PF13555.1     62 sp|P0A9W3|ETTA_ECOLI -            555   2.6e-06   26.8   0.5   2   2   1.6e-05    0.0073   15.8   0.0    17    40   344   366   338   369 0.82 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|P0A9W3|ETTA_ECOLI -            555   4.7e-06   26.7   0.7   1   2   1.1e-05    0.0048   16.9   0.3    29   176    37   207    33   215 0.55 AAA ATPase domain
MMR_HSR1             PF01926.18   116 sp|P0A9W3|ETTA_ECOLI -            555   2.2e-05   24.3   0.0   2   2    0.0002     0.092   12.7   0.0     2    24   352   374   351   407 0.80 50S ribosome-binding GTPase
SbcCD_C              PF13558.1     90 sp|P0A9W3|ETTA_ECOLI -            555   2.2e-05   24.2   1.5   1   2   0.00017     0.076   12.9   0.0    24    88   154   205   133   207 0.73 Putative exonuclease SbcCD, C subunit
Miro                 PF08477.8    119 sp|P0A9W3|ETTA_ECOLI -            555   3.3e-05   24.3   0.0   1   2   0.00056      0.25   11.8   0.0     1    25    34    58    34   131 0.78 Miro-like protein
DUF258               PF03193.11   161 sp|P0A9W3|ETTA_ECOLI -            555   8.2e-05   21.8   0.0   2   2   3.4e-05     0.015   14.4   0.0    23    66   336   380   322   486 0.82 Protein of unknown function, DUF258
AAA_13               PF13166.1    712 sp|P0A9W3|ETTA_ECOLI -            555   0.00017   20.1   0.8   3   3   0.00087      0.39    9.1   0.0    21    43   354   376   347   406 0.80 AAA domain
ArgK                 PF03308.11   267 sp|P0A9W3|ETTA_ECOLI -            555   0.00033   19.5   0.3   2   2   0.00088      0.39    9.4   0.0    18    49   338   369   324   391 0.84 ArgK protein
AAA_33               PF13671.1    143 sp|P0A9W3|ETTA_ECOLI -            555   0.00046   20.0   0.0   2   2   0.00089       0.4   10.5   0.0     4    24   354   374   351   416 0.75 AAA domain
AAA_22               PF13401.1    131 sp|P0A9W3|ETTA_ECOLI -            555    0.0014   18.8   1.0   2   2    0.0004      0.18   11.9   0.0     6    99   351   475   347   507 0.60 AAA domain
AAA_10               PF12846.2    304 sp|P0A9W3|ETTA_ECOLI -            555     0.003   17.0   1.0   2   2    0.0018       0.8    9.0   0.1     5    24   353   372   349   420 0.90 AAA-like domain
MobB                 PF03205.9    140 sp|P0A9W3|ETTA_ECOLI -            555     0.004   16.8   0.5   2   2    0.0012      0.55    9.9   0.0     2    20   351   369   350   372 0.92 Molybdopterin guanine dinucleotide synthesis protein B
AAA_17               PF13207.1    121 sp|P0A9W3|ETTA_ECOLI -            555     0.005   17.6   8.9   2   2   0.00054      0.24   12.1   0.0     1    19   351   369   351   406 0.87 AAA domain
AAA_15               PF13175.1    415 sp|P0A9W3|ETTA_ECOLI -            555    0.0058   15.7   0.1   3   3    0.0013      0.58    9.1   0.0    17    56   343   409   298   437 0.85 AAA ATPase domain
ATP-synt_ab          PF00006.20   215 sp|P0A9W3|ETTA_ECOLI -            555    0.0063   16.0   0.2   2   2   0.00012     0.055   12.9   0.0     7    63   341   398   336   426 0.82 ATP synthase alpha/beta family, nucleotide-binding domain
Dynamin_N            PF00350.18   168 sp|P0A9W3|ETTA_ECOLI -            555      0.01   15.6   3.3   2   2   0.00043       0.2   11.4   0.0     1    58   352   407   352   439 0.83 Dynamin family
NB-ARC               PF00931.17   287 sp|P0A9W3|ETTA_ECOLI -            555     0.057   12.2   1.3   2   2   0.00097      0.43    9.3   0.0     9    41   339   371   335   381 0.81 NB-ARC domain
PGM_PMM_II           PF02879.11   104 sp|P0A9W3|ETTA_ECOLI -            555       0.1   12.9   0.0   1   1   0.00065      0.29   11.4   0.0    21    95    32   117     6   126 0.69 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
EutC                 PF05985.6    238 sp|P19636|EUTC_ECOLI -            295   1.2e-81  273.2   0.0   1   1     1e-85   1.5e-81  272.9   0.0     2   237    61   293    60   294 0.98 Ethanolamine ammonia-lyase light chain (EutC)
PTA_PTB              PF01515.14   319 sp|P77218|EUTD_ECOLI -            338  9.2e-122  406.0   0.0   1   1    7e-126    1e-121  405.8   0.0     2   319     2   320     1   320 0.99 Phosphate acetyl/butaryl transferase
Fe-ADH               PF00465.14   366 sp|P76553|EUTG_ECOLI -            395  1.4e-111  372.7   6.9   1   1  2.1e-115  1.6e-111  372.5   6.9     1   366    27   387    27   387 0.94 Iron-containing alcohol dehydrogenase
Fe-ADH_2             PF13685.1    250 sp|P76553|EUTG_ECOLI -            395   5.7e-16   58.5   3.2   1   2     2e-12   1.5e-08   34.2   0.0     3    95    33   126    31   133 0.93 Iron-containing alcohol dehydrogenase
Fe-ADH_2             PF13685.1    250 sp|P76553|EUTG_ECOLI -            395   5.7e-16   58.5   3.2   2   2   4.5e-08   0.00033   20.0   5.2    99   246   148   296   140   299 0.92 Iron-containing alcohol dehydrogenase
EutH                 PF04346.7    354 sp|P76552|EUTH_ECOLI -            408  2.2e-147  490.6  45.9   1   1  1.7e-151  2.5e-147  490.4  45.9     1   353     1   391     1   392 0.98 Ethanolamine utilisation protein, EutH
BMC                  PF00936.14    75 sp|P76541|EUTL_ECOLI -            219   2.9e-23   81.3   1.0   1   2   5.9e-17   8.8e-13   47.7   0.5     1    64    35   109    35   129 0.94 BMC domain
BMC                  PF00936.14    75 sp|P76541|EUTL_ECOLI -            219   2.9e-23   81.3   1.0   2   2   4.8e-12   7.1e-08   32.0   0.0    13    64   157   210   147   218 0.84 BMC domain
PduV-EutP            PF10662.4    143 sp|P76556|EUTP_ECOLI -            159   3.2e-31  107.7   0.0   1   1   5.5e-34   3.7e-31  107.5   0.0     1   142     1   143     1   144 0.97 Ethanolamine utilisation - propanediol utilisation
MMR_HSR1             PF01926.18   116 sp|P76556|EUTP_ECOLI -            159   1.6e-05   24.8   0.0   1   1   5.3e-08   3.6e-05   23.6   0.0     1    93     3    78     3   116 0.71 50S ribosome-binding GTPase
ABC_tran             PF00005.22   137 sp|P76556|EUTP_ECOLI -            159   8.5e-05   22.8   0.0   1   1   1.3e-07   8.8e-05   22.8   0.0    12    39     2    31     1   156 0.78 ABC transporter
GTP_EFTU             PF00009.22   188 sp|P76556|EUTP_ECOLI -            159   0.00015   21.2   0.0   1   2   0.00022      0.15   11.4   0.0     5    34     3    32     1    41 0.77 Elongation factor Tu GTP binding domain
cobW                 PF02492.14   178 sp|P76556|EUTP_ECOLI -            159   0.00026   20.5   0.2   1   2   3.7e-06    0.0025   17.2   0.0     3    42     4    44     2    62 0.80 CobW/HypB/UreG, nucleotide-binding domain
Dynamin_N            PF00350.18   168 sp|P76556|EUTP_ECOLI -            159   0.00035   20.4   0.0   1   2     2e-05     0.013   15.2   0.0     1    28     4    31     4    35 0.90 Dynamin family
DUF258               PF03193.11   161 sp|P76556|EUTP_ECOLI -            159   0.00066   18.8   0.1   1   1   2.7e-06    0.0018   17.4   0.1    38    67     4    35     1    44 0.77 Protein of unknown function, DUF258
FeoB_N               PF02421.13   156 sp|P76556|EUTP_ECOLI -            159   0.00069   18.9   0.1   1   1   4.3e-06    0.0029   16.9   0.1     2   153     3   139     2   142 0.72 Ferrous iron transport protein B
AAA_29               PF13555.1     62 sp|P76556|EUTP_ECOLI -            159      0.01   15.3   0.0   1   1   2.3e-05     0.016   14.7   0.0    26    44     4    22     1    41 0.75 P-loop containing region of AAA domain
AAA_28               PF13521.1    163 sp|P76556|EUTP_ECOLI -            159     0.011   15.7   0.0   1   1   2.7e-05     0.018   14.9   0.0     1    21     3    28     3    37 0.78 AAA domain
MobB                 PF03205.9    140 sp|P76556|EUTP_ECOLI -            159     0.011   15.4   0.0   1   1   3.3e-05     0.022   14.4   0.0     1    49     2    47     2    76 0.76 Molybdopterin guanine dinucleotide synthesis protein B
AAA_21               PF13304.1    303 sp|P76556|EUTP_ECOLI -            159     0.019   14.9   0.0   1   1   3.1e-05     0.021   14.8   0.0     3    51     5    62     4   147 0.85 AAA domain
ATP_bind_1           PF03029.12   238 sp|P76556|EUTP_ECOLI -            159     0.043   13.3   0.3   1   2    0.0014      0.98    8.9   0.1     2    25     7    29     6    37 0.77 Conserved hypothetical ATP binding protein
AAA_17               PF13207.1    121 sp|P76556|EUTP_ECOLI -            159     0.054   14.3   0.0   1   1   0.00014     0.093   13.5   0.0     1    24     3    26     3    97 0.78 AAA domain
TrwB_AAD_bind        PF10412.4    386 sp|P76556|EUTP_ECOLI -            159     0.062   11.9   0.0   1   1   0.00014     0.095   11.3   0.0    16    54     2    41     1    50 0.81 Type IV secretion-system coupling protein DNA-binding domain
AAA_33               PF13671.1    143 sp|P76556|EUTP_ECOLI -            159     0.069   13.0   0.1   1   1   0.00015       0.1   12.4   0.1     2    30     4    32     4    80 0.71 AAA domain
AAA_18               PF13238.1    129 sp|P76556|EUTP_ECOLI -            159      0.07   13.4   0.0   1   1   0.00023      0.15   12.3   0.0     1    55     4    62     4    72 0.77 AAA domain
SRPRB                PF09439.5    181 sp|P76556|EUTP_ECOLI -            159     0.077   12.2   0.0   1   1   0.00019      0.13   11.4   0.0     5    32     3    32     1    50 0.80 Signal recognition particle receptor beta subunit
Miro                 PF08477.8    119 sp|P76556|EUTP_ECOLI -            159     0.087   13.3   0.1   1   1    0.0014      0.93   10.0   0.1     1    31     3    29     3   156 0.80 Miro-like protein
AAA_23               PF13476.1    202 sp|P76556|EUTP_ECOLI -            159     0.095   13.0   0.0   1   1   0.00023      0.15   12.3   0.0    23    40     5    22     4    56 0.87 AAA domain
Zeta_toxin           PF06414.7    201 sp|P76556|EUTP_ECOLI -            159     0.097   11.7   0.0   1   1   0.00024      0.16   11.0   0.0    21    47     6    35     2    39 0.78 Zeta toxin
BMC                  PF00936.14    75 sp|P0ABF4|EUTM_ECOLI -             97   6.3e-26   89.8   5.0   1   1   5.4e-30     8e-26   89.5   5.0     1    75     2    78     2    78 0.98 BMC domain
BMC                  PF00936.14    75 sp|P63746|EUTS_ECOLI -            111   9.7e-17   60.4   0.2   1   1   8.4e-21   1.2e-16   60.0   0.2     2    72    40   106    39   109 0.96 BMC domain
BMC                  PF00936.14    75 sp|P76540|EUTK_ECOLI -            166   3.1e-21   74.8   1.9   1   2   2.4e-24     5e-21   74.1   0.8     1    75     3    79     3    79 0.95 BMC domain
TrmB                 PF01978.14    68 sp|P76540|EUTK_ECOLI -            166    0.0026   17.4   0.0   1   1   2.7e-06    0.0058   16.3   0.0    15    60   115   162   110   165 0.90 Sugar-specific transcriptional regulator TrmB
EAP30                PF04157.11   223 sp|P76540|EUTK_ECOLI -            166     0.005   16.0   0.0   1   1   2.6e-06    0.0055   15.8   0.0   178   220   113   154    43   155 0.93 EAP30/Vps36 family
HTH_20               PF12840.2     61 sp|P76540|EUTK_ECOLI -            166    0.0055   16.4   0.1   1   1   5.3e-06     0.011   15.4   0.1    15    57   114   157   108   161 0.88 Helix-turn-helix domain
HTH_IclR             PF09339.5     52 sp|P76540|EUTK_ECOLI -            166    0.0062   16.0   0.2   1   1   6.7e-06     0.014   14.9   0.2     8    50   114   156   111   158 0.92 IclR helix-turn-helix domain
FaeA                 PF04703.7     62 sp|P76540|EUTK_ECOLI -            166     0.007   16.4   0.0   1   1   6.6e-06     0.014   15.5   0.0     3    49   112   158   110   162 0.93 FaeA-like protein
ADH_zinc_N_2         PF13602.1    127 sp|P76540|EUTK_ECOLI -            166     0.023   15.6   0.1   1   1   2.1e-05     0.045   14.6   0.1    33   118    59   150     8   155 0.50 Zinc-binding dehydrogenase
Exo_endo_phos        PF03372.18   249 sp|P09030|EX3_ECOLI  -            268   2.1e-26   93.3   0.0   1   1   3.3e-30   2.5e-26   93.1   0.0     1   249     4   259     4   259 0.80 Endonuclease/Exonuclease/phosphatase family
Exo_endo_phos_2      PF14529.1    119 sp|P09030|EX3_ECOLI  -            268   4.4e-10   39.2   0.0   1   1   8.7e-14   6.5e-10   38.6   0.0     2   119   104   263   103   263 0.79 Endonuclease-reverse transcriptase
Exonuc_VII_L         PF02601.10   319 sp|P04994|EX7L_ECOLI -            456     7e-92  308.0   1.1   1   1   1.8e-95     9e-92  307.6   1.1     1   319   126   442   126   442 0.96 Exonuclease VII, large subunit
tRNA_anti_2          PF13742.1     99 sp|P04994|EX7L_ECOLI -            456   1.3e-34  118.0   0.1   1   2   1.3e-37   6.7e-34  115.7   0.0     1    99     9   104     9   104 0.98 OB-fold nucleic acid binding domain
tRNA_anti-codon      PF01336.20    75 sp|P04994|EX7L_ECOLI -            456   1.9e-08   34.0   0.0   1   1   7.2e-12   3.5e-08   33.1   0.0     1    74    30   104    30   105 0.96 OB-fold nucleic acid binding domain
Exonuc_VII_S         PF02609.11    53 sp|P0A8G9|EX7S_ECOLI -             80     1e-22   79.6   3.9   1   1   3.4e-26   1.3e-22   79.3   3.9     1    53    11    63    11    63 0.99 Exonuclease VII small subunit
DUF3702              PF12486.3    148 sp|P0A8G9|EX7S_ECOLI -             80     0.034   13.8   1.3   2   2   2.4e-05     0.087   12.4   1.3   103   141    27    65    14    68 0.87 ImpA domain protein
AF0941-like          PF14591.1    127 sp|P0A8G9|EX7S_ECOLI -             80     0.079   13.0   0.3   1   1   2.7e-05     0.098   12.7   0.3    44    92    16    68    11    73 0.77 AF0941-like
MotA_ExbB            PF01618.11   139 sp|P0ABU7|EXBB_ECOLI -            244   4.5e-42  142.9   0.7   1   1     2e-45     1e-41  141.8   0.7     5   137    80   212    76   214 0.93 MotA/TolQ/ExbB proton channel family
DUF3566              PF12089.3    120 sp|P0ABU7|EXBB_ECOLI -            244     0.093   12.7   5.8   2   2   2.3e-05      0.12   12.4   2.4    80   119   167   211   133   212 0.78 Transmembrane domain of unknown function (DUF3566)
Vpu                  PF00558.14    81 sp|P0ABU7|EXBB_ECOLI -            244      0.37   10.3   1.8   1   2   0.00013      0.64    9.6   0.1     1    40    15    62    15    76 0.67 Vpu protein
ExbD                 PF02472.11   130 sp|P0ABV2|EXBD_ECOLI -            141   1.7e-29  102.4   0.5   1   1     5e-33   1.8e-29  102.3   0.5     3   127    13   134    11   137 0.96 Biopolymer transport protein ExbD/TolR
Tnp_P_element        PF12017.3    236 sp|P0ABV2|EXBD_ECOLI -            141     0.039   13.1   0.0   1   1   1.2e-05     0.045   12.9   0.0   183   218   100   135    70   141 0.85 Transposase protein
UPF0228              PF05727.6    127 sp|P0ABV2|EXBD_ECOLI -            141     0.058   13.1   0.0   1   1   2.5e-05     0.091   12.5   0.0    16    74    62   120    55   124 0.93 Uncharacterised protein family (UPF0228)
MFS_1                PF07690.11   352 sp|P0AA78|EXUT_ECOLI -            432   2.2e-55  187.8  44.7   1   2   1.8e-51   2.7e-47  161.2  23.1     2   269    16   289    15   301 0.89 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P0AA78|EXUT_ECOLI -            432   2.2e-55  187.8  44.7   2   2   3.5e-12   5.2e-08   31.9  15.0    59   178   300   417   287   430 0.86 Major Facilitator Superfamily
FBPase               PF00316.15   325 sp|P0A993|F16PA_ECOLI -            332  4.5e-144  479.2   0.0   1   1  6.9e-148  5.1e-144  479.0   0.0     2   324     3   328     2   329 0.98 Fructose-1-6-bisphosphatase
Inositol_P           PF00459.20   271 sp|P0A993|F16PA_ECOLI -            332     0.041   13.1   0.0   1   2   1.1e-05     0.084   12.1   0.0    38    97    58   117    22   118 0.74 Inositol monophosphatase family
FabA                 PF07977.8    138 sp|P0A6Q3|FABA_ECOLI -            172   5.9e-51  171.5   0.0   1   1   4.6e-55   6.9e-51  171.3   0.0     1   137    29   158    29   159 0.98 FabA-like domain
ketoacyl-synt        PF00109.21   254 sp|P0A953|FABB_ECOLI -            406   6.5e-43  147.0   2.7   1   1   1.8e-46   9.1e-43  146.5   2.7     2   254     2   246     1   246 0.87 Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C      PF02801.17   119 sp|P0A953|FABB_ECOLI -            406   1.3e-29  102.4   2.4   2   2   4.6e-33   2.3e-29  101.6   0.5     1   119   254   362   254   362 0.96 Beta-ketoacyl synthase, C-terminal domain
Thiolase_N           PF00108.18   264 sp|P0A953|FABB_ECOLI -            406   6.9e-05   21.9   0.2   1   1   2.8e-08   0.00014   20.9   0.2    68   146   143   223   132   232 0.78 Thiolase, N-terminal domain
Acyl_transf_1        PF00698.16   318 sp|P0AAI9|FABD_ECOLI -            309   9.4e-43  146.7   3.3   1   1   1.5e-46   1.1e-42  146.4   3.3     2   281     6   290     5   306 0.90 Acyl transferase domain
Abhydrolase_5        PF12695.2    145 sp|P0AAI9|FABD_ECOLI -            309   0.00014   21.6   0.6   1   1   2.8e-08   0.00021   21.0   0.6    16   125    31   150     7   218 0.76 Alpha/beta hydrolase family
ketoacyl-synt        PF00109.21   254 sp|P0AAI5|FABF_ECOLI -            413     1e-59  202.1   1.1   1   2   2.7e-63     1e-59  202.1   1.1     2   254     4   247     3   247 0.93 Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C      PF02801.17   119 sp|P0AAI5|FABF_ECOLI -            413   1.6e-39  134.4   1.7   1   1   8.4e-43   3.1e-39  133.4   1.7     1   119   255   370   255   370 0.97 Beta-ketoacyl synthase, C-terminal domain
Thiolase_N           PF00108.18   264 sp|P0AAI5|FABF_ECOLI -            413   1.3e-06   27.6   0.1   1   1   8.7e-10   3.2e-06   26.3   0.1    80   120   156   196   145   216 0.93 Thiolase, N-terminal domain
ACP_syn_III          PF08545.5     80 sp|P0AAI5|FABF_ECOLI -            413   7.7e-05   22.2   8.2   2   3   9.3e-05      0.34   10.5   0.0    42    65   222   248   205   262 0.77 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
adh_short            PF00106.20   167 sp|P0AEK2|FABG_ECOLI -            244   5.6e-40  136.9   1.7   1   1   6.4e-43   9.5e-40  136.2   1.7     1   166     6   169     6   170 0.92 short chain dehydrogenase
adh_short_C2         PF13561.1    241 sp|P0AEK2|FABG_ECOLI -            244   2.2e-32  112.7   1.7   1   1   1.8e-35   2.7e-32  112.4   1.7     5   240    14   241    12   242 0.92 Enoyl-(Acyl carrier protein) reductase
KR                   PF08659.5    181 sp|P0AEK2|FABG_ECOLI -            244   5.1e-21   75.1   0.9   1   1   5.5e-24   8.2e-21   74.4   0.9     3   174     8   180     7   196 0.84 KR domain
NAD_binding_10       PF13460.1    183 sp|P0AEK2|FABG_ECOLI -            244   2.6e-06   27.5   0.4   1   1   4.3e-09   6.4e-06   26.2   0.3     2   125     9   156     8   191 0.72 NADH(P)-binding
Epimerase            PF01370.16   236 sp|P0AEK2|FABG_ECOLI -            244   1.8e-05   24.3   0.2   1   1   1.8e-08   2.7e-05   23.7   0.2     1   119     8   142     8   180 0.76 NAD dependent epimerase/dehydratase family
Eno-Rase_NADH_b      PF12242.3     78 sp|P0AEK2|FABG_ECOLI -            244    0.0024   17.6   0.9   1   1   3.8e-06    0.0057   16.4   0.9    38    71     5    36     1    43 0.80 NAD(P)H binding domain of trans-2-enoyl-CoA reductase
RmlD_sub_bind        PF04321.12   287 sp|P0AEK2|FABG_ECOLI -            244     0.022   13.6   0.1   1   2   4.3e-05     0.064   12.1   0.1     4    53     9    76     6   102 0.86 RmlD substrate binding domain
DFP                  PF04127.10   185 sp|P0AEK2|FABG_ECOLI -            244     0.026   14.1   1.3   1   2   0.00017      0.25   10.9   0.1    31    92    17    89     8   145 0.77 DNA / pantothenate metabolism flavoprotein
MAAL_C               PF07476.6    249 sp|P0AEK2|FABG_ECOLI -            244     0.063   12.2   0.0   1   1   8.9e-05      0.13   11.1   0.0   127   195   163   230   151   238 0.82 Methylaspartate ammonia-lyase C-terminus
ACP_syn_III_C        PF08541.5     90 sp|P0A6R0|FABH_ECOLI -            317     3e-37  126.5   0.0   1   1   4.2e-40     1e-36  124.7   0.0     1    90   228   317   228   317 0.98 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
ACP_syn_III          PF08545.5     80 sp|P0A6R0|FABH_ECOLI -            317     4e-30  103.3   1.4   1   1   3.1e-33   7.5e-30  102.4   1.4     1    80   106   183   106   183 0.99 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
HMG_CoA_synt_N       PF01154.12   174 sp|P0A6R0|FABH_ECOLI -            317   1.3e-05   24.8   0.1   1   1   8.6e-09   2.1e-05   24.1   0.1     7   150     5   143     2   167 0.85 Hydroxymethylglutaryl-coenzyme A synthase N terminal
Chal_sti_synt_N      PF00195.14   227 sp|P0A6R0|FABH_ECOLI -            317   2.7e-05   23.5   0.7   1   1     2e-08   4.9e-05   22.6   0.7    98   225    48   168    21   170 0.81 Chalcone and stilbene synthases, N-terminal domain
ketoacyl-synt        PF00109.21   254 sp|P0A6R0|FABH_ECOLI -            317    0.0081   15.6   7.2   1   2   6.7e-06     0.017   14.6   3.6   101   206    36   142    24   145 0.67 Beta-ketoacyl synthase, N-terminal domain
Thiolase_N           PF00108.18   264 sp|P0A6R0|FABH_ECOLI -            317     0.041   12.8   0.9   1   1   2.9e-05     0.071   12.0   0.9    11   120    36   144    32   169 0.86 Thiolase, N-terminal domain
adh_short_C2         PF13561.1    241 sp|P0AEK4|FABI_ECOLI -            262   2.1e-79  266.7   0.1   1   1   6.3e-83   2.4e-79  266.5   0.1     1   241    13   252    13   252 0.98 Enoyl-(Acyl carrier protein) reductase
adh_short            PF00106.20   167 sp|P0AEK4|FABI_ECOLI -            262   6.6e-09   35.8   0.2   1   1   2.3e-12   8.6e-09   35.5   0.2     2   165     8   176     7   178 0.83 short chain dehydrogenase
KR                   PF08659.5    181 sp|P0AEK4|FABI_ECOLI -            262    0.0092   15.6   0.0   1   1   4.3e-06     0.016   14.8   0.0     4    91    10    94     8   111 0.77 KR domain
FabA                 PF07977.8    138 sp|P0A6Q6|FABZ_ECOLI -            151   9.1e-43  145.0   0.0   1   1   3.6e-46   1.1e-42  144.8   0.0     1   137    17   141    17   142 0.97 FabA-like domain
PS-DH                PF14765.1    296 sp|P0A6Q6|FABZ_ECOLI -            151    0.0034   16.6   0.0   1   1   1.4e-06    0.0041   16.3   0.0    29    90    50   121    25   148 0.77 Polyketide synthase dehydratase
MaoC_dehydratas      PF01575.14   123 sp|P0A6Q6|FABZ_ECOLI -            151      0.03   13.7   0.0   1   1   1.3e-05      0.04   13.3   0.0    74   109    90   125    52   138 0.68 MaoC like domain
4HBT                 PF03061.17    79 sp|P0A6Q6|FABZ_ECOLI -            151     0.054   13.6   0.0   1   1     3e-05     0.089   12.9   0.0     6    61    63   122    59   140 0.86 Thioesterase superfamily
AfsA                 PF03756.8    132 sp|P0A6Q6|FABZ_ECOLI -            151     0.092   12.4   0.0   1   1   6.4e-05      0.19   11.4   0.0    28   129    44   144    24   147 0.72 A-factor biosynthesis hotdog domain
Thiolase_N           PF00108.18   264 sp|P21151|FADA_ECOLI -            387     8e-92  306.9   2.1   1   1   3.8e-95   1.1e-91  306.4   2.1     1   264     1   254     1   254 0.97 Thiolase, N-terminal domain
Thiolase_C           PF02803.13   123 sp|P21151|FADA_ECOLI -            387   1.4e-49  166.5   1.6   2   2   4.8e-53   1.4e-49  166.5   0.2     1   123   261   386   261   386 0.98 Thiolase, C-terminal domain
ketoacyl-synt        PF00109.21   254 sp|P21151|FADA_ECOLI -            387   3.6e-05   23.3   1.1   1   2   1.2e-08   3.6e-05   23.3   1.1   168   218    83   133    76   146 0.85 Beta-ketoacyl synthase, N-terminal domain
ACP_syn_III          PF08545.5     80 sp|P21151|FADA_ECOLI -            387   0.00049   19.7   0.6   1   2   6.6e-05       0.2   11.3   0.1     3    37    87   121    85   145 0.91 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
ECH                  PF00378.15   245 sp|P21177|FADB_ECOLI -            729   2.4e-78  262.6   0.5   1   1   1.3e-81   4.7e-78  261.6   0.0     3   244    12   266    10   267 0.99 Enoyl-CoA hydratase/isomerase family
3HCDH_N              PF02737.13   180 sp|P21177|FADB_ECOLI -            729   1.8e-60  203.6   0.2   2   2   1.4e-63   5.2e-60  202.1   0.2     2   180   316   494   315   494 0.99 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
3HCDH                PF00725.17    97 sp|P21177|FADB_ECOLI -            729   1.8e-35  121.2   2.8   2   3     1e-29   3.7e-26   91.3   0.1     1    97   496   592   496   592 0.97 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
3HCDH                PF00725.17    97 sp|P21177|FADB_ECOLI -            729   1.8e-35  121.2   2.8   3   3   1.5e-09   5.4e-06   26.7   0.0     4    62   628   690   627   711 0.86 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
NAD_Gly3P_dh_N       PF01210.18   157 sp|P21177|FADB_ECOLI -            729     0.041   13.6   0.1   1   1     2e-05     0.073   12.8   0.1     2   106   316   431   315   449 0.80 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
DUF1974              PF09317.6    284 sp|Q47146|FADE_ECOLI -            814  1.4e-116  388.8   0.0   1   1  4.9e-120  1.8e-116  388.5   0.0     1   284   514   792   514   792 1.00 Domain of unknown function (DUF1974)
Acyl-CoA_dh_N        PF02771.11   113 sp|Q47146|FADE_ECOLI -            814   1.7e-15   57.5   0.0   1   1   1.2e-18   4.6e-15   56.1   0.0    28   112   147   232   121   233 0.83 Acyl-CoA dehydrogenase, N-terminal domain
Acyl-CoA_dh_1        PF00441.19   150 sp|Q47146|FADE_ECOLI -            814   2.7e-13   50.2   0.9   1   1   1.6e-16   5.8e-13   49.2   0.9     1   142   360   504   360   508 0.94 Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_M        PF02770.14    52 sp|Q47146|FADE_ECOLI -            814     1e-06   28.1   0.0   1   1   5.1e-10   1.9e-06   27.2   0.0     1    51   237   295   237   297 0.96 Acyl-CoA dehydrogenase, middle domain
Thiolase_N           PF00108.18   264 sp|P76503|FADI_ECOLI -            436   5.1e-66  222.3   0.5   1   1   1.4e-69   6.9e-66  221.9   0.5     3   264    14   288    12   288 0.97 Thiolase, N-terminal domain
Thiolase_C           PF02803.13   123 sp|P76503|FADI_ECOLI -            436   6.4e-37  125.7   0.8   2   2   3.4e-40   1.7e-36  124.3   0.1     3   122   297   434   295   435 0.98 Thiolase, C-terminal domain
ketoacyl-synt        PF00109.21   254 sp|P76503|FADI_ECOLI -            436   4.5e-05   23.0   5.0   1   3   9.1e-08   0.00045   19.7   0.7   162   206    84   129    55   155 0.78 Beta-ketoacyl synthase, N-terminal domain
ECH                  PF00378.15   245 sp|P77399|FADJ_ECOLI -            714   1.9e-60  204.0   0.5   1   1   6.7e-64   3.3e-60  203.2   0.5     6   195    14   208    11   259 0.89 Enoyl-CoA hydratase/isomerase family
3HCDH_N              PF02737.13   180 sp|P77399|FADJ_ECOLI -            714   2.1e-59  200.2   0.1   1   1   9.3e-63   4.6e-59  199.0   0.0     2   179   311   489   310   490 0.98 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
3HCDH                PF00725.17    97 sp|P77399|FADJ_ECOLI -            714   3.6e-37  126.6   0.0   2   3   3.6e-32   1.8e-28   98.8   0.0     1    97   492   586   492   586 0.99 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
3HCDH                PF00725.17    97 sp|P77399|FADJ_ECOLI -            714   3.6e-37  126.6   0.0   3   3   9.3e-09   4.6e-05   23.7   0.0     3    85   618   703   618   711 0.89 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AMP-binding          PF00501.23   417 sp|P38135|FADK_ECOLI -            548   2.3e-96  322.7   0.0   1   1  3.8e-100   2.8e-96  322.4   0.0     1   416    30   439    30   440 0.82 AMP-binding enzyme
AMP-binding_C        PF13193.1     73 sp|P38135|FADK_ECOLI -            548     1e-18   67.9   0.3   1   1   3.6e-22   2.7e-18   66.6   0.3     1    73   448   525   448   525 0.90 AMP-binding enzyme C-terminal domain
Toluene_X            PF03349.11   427 sp|P10384|FADL_ECOLI -            446  3.4e-147  490.2  18.2   1   1  1.1e-150  3.9e-147  490.0  18.2     2   427    17   446    16   446 0.98 Outer membrane protein transport protein (OMPP1/FadL/TodX)
4HBT_2               PF13279.1    121 sp|P77712|FADM_ECOLI -            132   5.8e-17   62.2   0.0   1   1   1.3e-20   6.7e-17   62.0   0.0     4   109    10   114     7   129 0.88 Thioesterase-like superfamily
Acyl-ACP_TE          PF01643.12   261 sp|P77712|FADM_ECOLI -            132     3e-14   52.6   0.1   1   2   7.1e-09   3.5e-05   22.8   0.1   167   195     2    30     1    42 0.90 Acyl-ACP thioesterase
Acyl-ACP_TE          PF01643.12   261 sp|P77712|FADM_ECOLI -            132     3e-14   52.6   0.1   2   2   1.4e-10   6.9e-07   28.4   0.0    52   139    42   129    33   132 0.91 Acyl-ACP thioesterase
4HBT                 PF03061.17    79 sp|P77712|FADM_ECOLI -            132   4.1e-14   52.4   0.0   1   1   1.1e-17   5.6e-14   52.0   0.0     2    77    16    97    15    99 0.96 Thioesterase superfamily
BPD_transp_1         PF00528.17   185 sp|P75681|FBPB_ECOLI -            115   1.6e-11   44.0   4.7   1   1   2.6e-15   1.9e-11   43.8   4.7    78   175     2   100     1   102 0.87 Binding-protein-dependent transport system inner membrane component
Bac_export_3         PF01313.14    76 sp|P75681|FBPB_ECOLI -            115       0.2   11.3   5.7   1   2     9e-05      0.67    9.6   0.8     8    41    16    49     9    58 0.88 Bacterial export proteins, family 3
ABC_tran             PF00005.22   137 sp|P37009|FBPC_ECOLI -            348   9.7e-38  129.5   0.0   1   1   2.8e-40   1.4e-37  129.0   0.0     2   136    23   164    22   165 0.98 ABC transporter
TOBE_2               PF08402.5     75 sp|P37009|FBPC_ECOLI -            348   1.8e-12   47.0   0.1   1   1   1.1e-14   5.5e-12   45.5   0.1     1    75   273   344   273   344 0.87 TOBE domain
AAA_21               PF13304.1    303 sp|P37009|FBPC_ECOLI -            348   8.6e-08   32.4   0.0   1   2   0.00065      0.33   10.8   0.0     4    22    37    55    34    80 0.78 AAA domain
AAA_21               PF13304.1    303 sp|P37009|FBPC_ECOLI -            348   8.6e-08   32.4   0.0   2   2   1.3e-06   0.00068   19.6   0.0   233   287   133   184   101   198 0.79 AAA domain
AAA_15               PF13175.1    415 sp|P37009|FBPC_ECOLI -            348   2.1e-05   23.7   0.0   2   2   1.2e-05    0.0064   15.5   0.0   371   411   156   196   147   198 0.94 AAA ATPase domain
AAA_16               PF13191.1    185 sp|P37009|FBPC_ECOLI -            348   0.00015   21.7   0.0   1   1   5.7e-07   0.00029   20.8   0.0    22    63    30    72    19   162 0.78 AAA ATPase domain
AAA                  PF00004.24   132 sp|P37009|FBPC_ECOLI -            348   0.00025   21.2   0.2   1   1   4.7e-06    0.0024   18.0   0.2     2    66    36   162    35   199 0.59 ATPase family associated with various cellular activities (AAA)
AAA_14               PF13173.1    128 sp|P37009|FBPC_ECOLI -            348   0.00075   19.3   0.0   1   1   6.8e-06    0.0035   17.2   0.0     2    48    32    78    31    94 0.83 AAA domain
SMC_N                PF02463.14   220 sp|P37009|FBPC_ECOLI -            348    0.0027   16.9   0.1   2   2   0.00029      0.15   11.3   0.0   111   197    63   191    51   214 0.67 RecF/RecN/SMC N terminal domain
DUF258               PF03193.11   161 sp|P37009|FBPC_ECOLI -            348    0.0052   15.9   0.0   1   1   1.7e-05    0.0085   15.2   0.0    22    64    18    61     3    79 0.79 Protein of unknown function, DUF258
RecA                 PF00154.16   323 sp|P37009|FBPC_ECOLI -            348    0.0074   15.3   0.0   1   1   3.1e-05     0.016   14.3   0.0    50    92    29    70    11    78 0.90 recA bacterial DNA recombination protein
AAA_22               PF13401.1    131 sp|P37009|FBPC_ECOLI -            348    0.0075   16.4   0.1   1   1   5.2e-05     0.027   14.6   0.0     4    27    32    55    27    92 0.79 AAA domain
ABC_ATPase           PF09818.4    448 sp|P37009|FBPC_ECOLI -            348    0.0086   14.6   0.5   2   2   0.00032      0.16   10.4   0.0   374   413   173   212   130   227 0.83 Predicted ATPase of the ABC class
KaiC                 PF06745.8    227 sp|P37009|FBPC_ECOLI -            348     0.013   14.6   0.4   1   2   0.00075      0.38    9.8   0.0    14    53    27    64    19    80 0.75 KaiC
ATP-synt_ab          PF00006.20   215 sp|P37009|FBPC_ECOLI -            348     0.015   14.8   0.2   1   1   3.5e-05     0.018   14.5   0.2     5    36    21    53    18   212 0.88 ATP synthase alpha/beta family, nucleotide-binding domain
AAA_25               PF13481.1    194 sp|P37009|FBPC_ECOLI -            348     0.015   14.7   0.0   1   1   0.00016      0.08   12.3   0.0    29    50    28    49    12    77 0.87 AAA domain
AAA_33               PF13671.1    143 sp|P37009|FBPC_ECOLI -            348     0.018   14.9   0.1   1   1    0.0003      0.15   11.9   0.1     1    33    34   113    34   203 0.50 AAA domain
AAA_29               PF13555.1     62 sp|P37009|FBPC_ECOLI -            348      0.02   14.4   0.0   1   1   7.4e-05     0.038   13.5   0.0    19    40    29    49    20    52 0.85 P-loop containing region of AAA domain
NB-ARC               PF00931.17   287 sp|P37009|FBPC_ECOLI -            348     0.025   13.4   0.0   1   1   9.1e-05     0.046   12.5   0.0     9    39    22    52    18    84 0.84 NB-ARC domain
Rad17                PF03215.10   519 sp|P37009|FBPC_ECOLI -            348     0.026   13.2   0.0   1   1   7.1e-05     0.037   12.7   0.0    44    90    31    78    19    99 0.67 Rad17 cell cycle checkpoint protein
AAA_19               PF13245.1     76 sp|P37009|FBPC_ECOLI -            348     0.031   14.0   0.0   1   1   0.00013     0.064   13.0   0.0    10    35    32    56    24    78 0.82 Part of AAA domain
AAA_17               PF13207.1    121 sp|P37009|FBPC_ECOLI -            348     0.036   14.8   0.2   1   1   0.00015     0.074   13.8   0.2     4    21    37    54    34   196 0.70 AAA domain
Miro                 PF08477.8    119 sp|P37009|FBPC_ECOLI -            348      0.05   14.1   0.0   1   1   0.00025      0.13   12.8   0.0     2    44    35    76    34    87 0.80 Miro-like protein
AAA_5                PF07728.9    139 sp|P37009|FBPC_ECOLI -            348     0.056   13.1   0.0   1   1   0.00024      0.12   12.0   0.0     2    22    35    55    34    81 0.77 AAA domain (dynein-related subfamily)
Arch_ATPase          PF01637.13   234 sp|P37009|FBPC_ECOLI -            348     0.059   13.0   0.0   1   1   0.00019     0.098   12.3   0.0    21    55    33    66    22    82 0.76 Archaeal ATPase
UPF0079              PF02367.12   123 sp|P37009|FBPC_ECOLI -            348     0.065   12.8   0.0   1   1   0.00026      0.13   11.8   0.0    11    37    28    53    13    63 0.81 Uncharacterised P-loop hydrolase UPF0079
AAA_18               PF13238.1    129 sp|P37009|FBPC_ECOLI -            348     0.069   13.4   0.0   1   1   0.00027      0.14   12.4   0.0     1    22    35    56    35    93 0.78 AAA domain
AAA_28               PF13521.1    163 sp|P37009|FBPC_ECOLI -            348     0.095   12.6   0.1   1   1   0.00071      0.36   10.7   0.0     2    20    35    53    34    77 0.84 AAA domain
AAA_24               PF13479.1    213 sp|P37009|FBPC_ECOLI -            348      0.15   11.6   0.0   1   1   0.00058      0.29   10.6   0.0     2    23    31    52    30    83 0.74 AAA domain
AAA_23               PF13476.1    202 sp|P37009|FBPC_ECOLI -            348       0.2   11.9   0.7   1   1   0.00077       0.4   10.9   0.1    17    37    27    50     4    53 0.73 AAA domain
Epimerase            PF01370.16   236 sp|P32055|FCL_ECOLI  -            321   3.8e-70  235.9   0.0   1   1   1.5e-73   4.5e-70  235.7   0.0     1   236     6   246     6   246 0.95 NAD dependent epimerase/dehydratase family
RmlD_sub_bind        PF04321.12   287 sp|P32055|FCL_ECOLI  -            321   7.6e-08   31.5   0.1   1   1   5.6e-11   1.6e-07   30.4   0.1     2    69     5    73     4   282 0.79 RmlD substrate binding domain
Polysacc_synt_2      PF02719.10   294 sp|P32055|FCL_ECOLI  -            321   0.00071   18.5   0.4   2   3   1.2e-05     0.036   12.9   0.1    65   126    43   105    40   110 0.86 Polysaccharide biosynthesis protein
Semialdhyde_dh       PF01118.19   121 sp|P32055|FCL_ECOLI  -            321     0.017   15.4   0.0   1   2   3.7e-05      0.11   12.8   0.0     1    30     5    34     5    65 0.89 Semialdehyde dehydrogenase, NAD binding domain
DapB_N               PF01113.15   124 sp|P32055|FCL_ECOLI  -            321     0.075   12.9   0.5   1   3   0.00017      0.49   10.3   0.0     2    35     5    38     4    60 0.82 Dihydrodipicolinate reductase, N-terminus
CoA_transf_3         PF02515.12   191 sp|P69902|FCTA_ECOLI -            416   3.3e-43  147.1   0.0   1   1   3.2e-47   4.7e-43  146.6   0.0     1   147    70   215    70   244 0.96 CoA-transferase family III
FdhD-NarQ            PF02634.10   236 sp|P32177|FDHD_ECOLI -            277   8.1e-73  244.7   0.0   1   1   6.4e-77   9.5e-73  244.5   0.0     1   235    38   275    38   276 0.92 FdhD/NarQ family
FdhE                 PF04216.7    293 sp|P13024|FDHE_ECOLI -            309  2.5e-114  381.9   1.1   1   1  1.4e-117    3e-114  381.6   1.1     5   293    19   304     9   304 0.98 Protein involved in formate dehydrogenase formation
Stc1                 PF12898.2     84 sp|P13024|FDHE_ECOLI -            309     0.033   14.2   1.2   1   1   2.9e-05     0.061   13.3   1.2    33    81   208   258   198   261 0.87 Stc1 domain
Elf1                 PF05129.8     81 sp|P13024|FDHE_ECOLI -            309     0.089   12.5   3.7   1   2   0.00027      0.57    9.9   0.1    24    57   189   223   175   228 0.79 Transcription elongation factor Elf1 like
Molybdopterin        PF00384.17   432 sp|P07658|FDHF_ECOLI -            715  1.8e-116  389.3   0.0   1   1  7.1e-120  2.6e-116  388.8   0.0     1   431    61   487    61   488 0.95 Molybdopterin oxidoreductase
Molydop_binding      PF01568.16   110 sp|P07658|FDHF_ECOLI -            715     2e-26   91.9   0.0   1   1   1.2e-29   4.5e-26   90.8   0.0     2   110   576   682   575   682 0.97 Molydopterin dinucleotide binding domain
Molybdop_Fe4S4       PF04879.11    55 sp|P07658|FDHF_ECOLI -            715   7.6e-16   57.6   0.8   1   1   4.4e-19   1.6e-15   56.5   0.8     1    54     1    53     1    54 0.95 Molybdopterin oxidoreductase Fe4S4 domain
Molybdopterin        PF00384.17   432 sp|P24183|FDNG_ECOLI -           1015   8.4e-36  123.6   0.1   1   2   4.2e-36   1.5e-32  112.8   0.1     1   379   107   589   107   593 0.81 Molybdopterin oxidoreductase
Molybdopterin        PF00384.17   432 sp|P24183|FDNG_ECOLI -           1015   8.4e-36  123.6   0.1   2   2   0.00022      0.82    8.3   0.0   387   428   614   655   612   658 0.93 Molybdopterin oxidoreductase
Molybdop_Fe4S4       PF04879.11    55 sp|P24183|FDNG_ECOLI -           1015   8.5e-20   70.3   0.4   1   1   6.2e-23   2.3e-19   68.9   0.1     2    55    44   104    43   104 0.96 Molybdopterin oxidoreductase Fe4S4 domain
Molydop_binding      PF01568.16   110 sp|P24183|FDNG_ECOLI -           1015   8.9e-17   60.8   0.1   1   1     8e-20     3e-16   59.2   0.1     4   109   893  1008   890  1009 0.92 Molydopterin dinucleotide binding domain
TAT_signal           PF10518.4     26 sp|P24183|FDNG_ECOLI -           1015     0.074   13.0   3.4   1   2   4.3e-05      0.16   12.0   0.6     2    23     3    24     2    27 0.90 TAT (twin-arginine translocation) pathway signal sequence
Cytochrom_B_N        PF00033.14   188 sp|P0AEK7|FDNI_ECOLI -            217   1.5e-20   73.3  19.2   1   1   8.8e-24   1.9e-20   73.0  19.2     4   188    10   186     7   186 0.92 Cytochrome b(N-terminal)/b6/petB
Ni_hydr_CYTB         PF01292.15   182 sp|P0AEK7|FDNI_ECOLI -            217   1.5e-18   66.8  17.8   1   1   8.8e-22   1.9e-18   66.5  17.8     5   182    13   186     9   186 0.89 Prokaryotic cytochrome b561
EcsB                 PF05975.7    386 sp|P0AEK7|FDNI_ECOLI -            217     0.056   11.9  10.8   2   2   3.4e-05     0.072   11.5   2.8   135   227   120   212   109   215 0.84 Bacterial ABC transporter protein EcsB
ABC2_membrane_4      PF12730.2    232 sp|P0AEK7|FDNI_ECOLI -            217      0.82    8.7  17.8   1   2   0.00035      0.74    8.9   2.6   101   154    20    75     9    79 0.74 ABC-2 family transporter protein
Tmemb_55A            PF09788.4    256 sp|P0AEK7|FDNI_ECOLI -            217       3.8    6.5   5.2   2   2   0.00027      0.57    9.2   1.2   184   240   101   157    98   176 0.82 Transmembrane protein 55A
DUF3671              PF12420.3    104 sp|P0AEK7|FDNI_ECOLI -            217       8.6    6.3  12.5   1   2   0.00029      0.61   10.0   1.3    32    96     3    74     1    79 0.62 Protein of unknown function
Cytochrom_B_N        PF00033.14   188 sp|P0AEL0|FDOI_ECOLI -            211   1.9e-23   82.8  20.0   1   1   1.2e-26   2.4e-23   82.4  20.0     2   188     8   184     7   184 0.88 Cytochrome b(N-terminal)/b6/petB
Ni_hydr_CYTB         PF01292.15   182 sp|P0AEL0|FDOI_ECOLI -            211   3.5e-22   78.6  18.2   1   1   2.1e-25   4.4e-22   78.3  18.2     1   182     9   184     9   184 0.88 Prokaryotic cytochrome b561
DUF4405              PF14358.1     64 sp|P0AEL0|FDOI_ECOLI -            211   0.00067   19.7  24.1   1   2   8.9e-05      0.19   11.8   7.7     9    57    21    69    17    73 0.94 Domain of unknown function (DUF4405)
DUF4405              PF14358.1     64 sp|P0AEL0|FDOI_ECOLI -            211   0.00067   19.7  24.1   2   2   2.9e-05     0.062   13.4   8.5    10    61   119   169   112   171 0.85 Domain of unknown function (DUF4405)
PapJ                 PF14855.1    187 sp|P0AEL0|FDOI_ECOLI -            211     0.072   12.5   0.0   1   1   5.8e-05      0.12   11.7   0.0    13    56    63   108    56   115 0.79 Pilus-assembly fibrillin subunit, chaperone
Ferric_reduct        PF01794.14   125 sp|P0AEL0|FDOI_ECOLI -            211      0.48   10.5  15.0   2   2   0.00018      0.38   10.8   6.6     4    76   117   192   114   201 0.72 Ferric reductase like transmembrane component
Molybdopterin        PF00384.17   432 sp|P32176|FDOG_ECOLI -           1016   4.8e-33  114.5   0.0   1   3   1.8e-35   6.8e-32  110.7   0.0     1   380   107   590   107   592 0.79 Molybdopterin oxidoreductase
Molybdop_Fe4S4       PF04879.11    55 sp|P32176|FDOG_ECOLI -           1016     1e-18   66.8   0.1   1   1   5.5e-22     2e-18   65.9   0.1     2    55    44   104    43   104 0.91 Molybdopterin oxidoreductase Fe4S4 domain
Molydop_binding      PF01568.16   110 sp|P32176|FDOG_ECOLI -           1016   3.1e-16   59.1   0.0   1   1   2.3e-19   8.7e-16   57.7   0.0     4   109   894  1009   891  1010 0.93 Molydopterin dinucleotide binding domain
TAT_signal           PF10518.4     26 sp|P32176|FDOG_ECOLI -           1016      0.04   13.9   1.6   1   1   5.3e-05       0.2   11.7   1.6     2    24     3    25     2    27 0.89 TAT (twin-arginine translocation) pathway signal sequence
Aldedh               PF00171.17   462 sp|P80668|FEAB_ECOLI -            499  2.7e-163  543.6   0.0   1   1  2.2e-167  3.3e-163  543.3   0.0     5   462    33   495    30   495 0.97 Aldehyde dehydrogenase family
FecCD                PF01032.13   311 sp|P15030|FECC_ECOLI -            332   1.6e-86  289.9  30.0   1   1   2.6e-90   1.9e-86  289.7  30.0     2   311    18   330    17   330 0.95 FecCD transport family
ABC-3                PF00950.12   258 sp|P15030|FECC_ECOLI -            332   1.2e-07   31.3  11.2   2   2   1.6e-11   1.2e-07   31.3  11.2    50   253   119   326    99   330 0.80 ABC 3 transport family
Peripla_BP_2         PF01497.13   238 sp|P15028|FECB_ECOLI -            300   6.7e-30  103.9   0.5   1   1   5.7e-34   8.5e-30  103.6   0.5     2   237    41   269    40   270 0.89 Periplasmic binding protein
Sigma70_r4_2         PF08281.7     54 sp|P23484|FECI_ECOLI -            173   2.8e-15   55.5   0.4   1   1   7.5e-18   5.5e-15   54.5   0.0     2    54   112   164   111   164 0.97 Sigma-70, region 4
Sigma70_r2           PF04542.9     71 sp|P23484|FECI_ECOLI -            173   9.1e-12   44.4   0.2   1   1   1.8e-14   1.3e-11   43.9   0.2     1    69    16    81    16    83 0.90 Sigma-70 region 2
Sigma70_r4           PF04545.11    50 sp|P23484|FECI_ECOLI -            173   8.2e-08   31.4   0.0   1   1   2.3e-10   1.7e-07   30.4   0.0     2    47   118   163   117   164 0.95 Sigma-70, region 4
Sigma70_ECF          PF07638.6    185 sp|P23484|FECI_ECOLI -            173   4.4e-05   23.2   0.1   1   1   1.3e-07   9.9e-05   22.0   0.1    53   172    42   157    11   164 0.76 ECF sigma factor
HTH_23               PF13384.1     50 sp|P23484|FECI_ECOLI -            173   0.00012   21.6   0.2   1   1   4.1e-07    0.0003   20.3   0.0    11    40   130   159   124   163 0.80 Homeodomain-like domain
HTH_24               PF13412.1     48 sp|P23484|FECI_ECOLI -            173   0.00041   19.6   0.0   1   1   9.3e-07   0.00069   18.9   0.0    12    42   131   161   129   163 0.86 Winged helix-turn-helix DNA-binding
PCI                  PF01399.22   105 sp|P23484|FECI_ECOLI -            173    0.0023   18.2   0.0   1   1   5.5e-06    0.0041   17.4   0.0     6    90    73   166    68   167 0.78 PCI domain
MarR_2               PF12802.2     62 sp|P23484|FECI_ECOLI -            173    0.0047   16.5   0.0   1   1   1.5e-05     0.011   15.4   0.0    14    51   131   166   128   170 0.89 MarR family
HTH_38               PF13936.1     44 sp|P23484|FECI_ECOLI -            173    0.0052   16.3   0.1   1   1   2.2e-05     0.016   14.7   0.0    19    41   135   157   126   159 0.87 Helix-turn-helix domain
HTH_40               PF14493.1     91 sp|P23484|FECI_ECOLI -            173    0.0061   16.7   0.0   1   1   2.1e-05     0.015   15.4   0.0     5    40   127   163   123   170 0.85 Helix-turn-helix domain
HTH_28               PF13518.1     52 sp|P23484|FECI_ECOLI -            173    0.0063   16.4   0.4   1   1     3e-05     0.022   14.7   0.0    11    35   135   159   126   164 0.86 Helix-turn-helix domain
GerE                 PF00196.14    58 sp|P23484|FECI_ECOLI -            173    0.0073   15.6   0.0   1   1   2.3e-05     0.017   14.4   0.0    16    42   134   160   125   163 0.87 Bacterial regulatory proteins, luxR family
HTH_11               PF08279.7     55 sp|P23484|FECI_ECOLI -            173     0.015   14.9   0.0   1   1   3.9e-05     0.029   14.0   0.0     9    38   130   159   126   162 0.81 HTH domain
HTH_Tnp_4            PF13613.1     53 sp|P23484|FECI_ECOLI -            173     0.019   14.4   0.0   1   1   5.1e-05     0.038   13.5   0.0    19    45   136   162   135   166 0.93 Helix-turn-helix of DDE superfamily endonuclease
HTH_3                PF01381.17    55 sp|P23484|FECI_ECOLI -            173     0.062   13.1   0.1   1   1   0.00022      0.17   11.7   0.1     9    30   136   157   130   160 0.92 Helix-turn-helix
HTH_Mga              PF08280.6     59 sp|P23484|FECI_ECOLI -            173     0.069   12.9   0.0   1   1   0.00019      0.14   11.9   0.0    17    41   134   158   128   162 0.84 M protein trans-acting positive regulator (MGA) HTH domain
HTH_36               PF13730.1     55 sp|P23484|FECI_ECOLI -            173     0.076   13.1   0.0   1   1   0.00019      0.14   12.2   0.0    24    54   128   165   110   166 0.75 Helix-turn-helix domain
HTH_IclR             PF09339.5     52 sp|P23484|FECI_ECOLI -            173     0.095   12.3   0.1   1   1   0.00031      0.23   11.0   0.0    17    40   135   158   110   166 0.78 IclR helix-turn-helix domain
MarR                 PF01047.17    59 sp|P23484|FECI_ECOLI -            173       0.1   12.3   0.0   1   1   0.00037      0.28   10.9   0.0    11    36   130   155   129   161 0.89 MarR family
TonB_dep_Rec         PF00593.19   277 sp|P13036|FECA_ECOLI -            774   9.3e-23   81.5  17.8   2   2   3.1e-26   9.3e-23   81.5  17.8     2   275   526   771   525   773 0.88 TonB dependent receptor
Plug                 PF07715.10   108 sp|P13036|FECA_ECOLI -            774   9.9e-20   70.8   0.4   1   1   1.1e-22   3.4e-19   69.1   0.4     4   108   132   244   129   244 0.87 TonB-dependent Receptor Plug Domain
OMP_b-brl_3          PF14905.1    506 sp|P13036|FECA_ECOLI -            774   2.8e-10   39.5  15.3   1   1   1.1e-13   3.3e-10   39.2  12.7   164   477   437   755   429   771 0.73 Outer membrane protein beta-barrel family
STN                  PF07660.9     52 sp|P13036|FECA_ECOLI -            774   3.6e-10   39.2   0.0   1   1   3.8e-13   1.1e-09   37.6   0.0     2    52    57   107    56   107 0.95 Secretin and TonB N terminus short domain
Porin_1              PF00267.16   337 sp|P13036|FECA_ECOLI -            774    0.0011   18.2   0.4   1   1   7.8e-07    0.0023   17.2   0.4   199   267   560   634   531   661 0.80 Gram-negative porin
ABC_tran             PF00005.22   137 sp|P15031|FECE_ECOLI -            255   1.5e-33  115.9   0.0   1   1   4.4e-36   2.2e-33  115.4   0.0     1   136    18   166    18   167 0.98 ABC transporter
AAA_21               PF13304.1    303 sp|P15031|FECE_ECOLI -            255   1.5e-12   48.1   0.1   1   2   5.6e-08   2.8e-05   24.2   0.2     1    23    30    52    30    71 0.85 AAA domain
AAA_21               PF13304.1    303 sp|P15031|FECE_ECOLI -            255   1.5e-12   48.1   0.1   2   2   2.7e-07   0.00013   21.9   0.0   234   298   136   197    91   199 0.81 AAA domain
SMC_N                PF02463.14   220 sp|P15031|FECE_ECOLI -            255     2e-09   37.0   0.0   1   1   1.4e-09   7.2e-07   28.6   0.0    24   198    28   196    11   216 0.68 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P15031|FECE_ECOLI -            255   7.4e-08   31.8   0.1   1   1   3.6e-10   1.8e-07   30.6   0.1    21    54    26    59    17    62 0.86 P-loop containing region of AAA domain
AAA_23               PF13476.1    202 sp|P15031|FECE_ECOLI -            255   4.2e-05   23.9   0.1   1   1   1.3e-07   6.2e-05   23.4   0.1    13    43    21    52    13    67 0.82 AAA domain
AAA_15               PF13175.1    415 sp|P15031|FECE_ECOLI -            255   4.9e-05   22.5   0.0   1   2   0.00012     0.057   12.4   0.0    13    42    19    48     9    76 0.80 AAA ATPase domain
AAA_16               PF13191.1    185 sp|P15031|FECE_ECOLI -            255   5.6e-05   23.2   0.3   1   1   3.1e-07   0.00015   21.7   0.3    22   150    26   157    15   210 0.47 AAA ATPase domain
DUF258               PF03193.11   161 sp|P15031|FECE_ECOLI -            255   0.00014   21.1   0.0   1   1   4.5e-07   0.00022   20.4   0.0    13    56     5    49     1    73 0.87 Protein of unknown function, DUF258
AAA_14               PF13173.1    128 sp|P15031|FECE_ECOLI -            255    0.0013   18.5   0.0   1   2   2.9e-05     0.014   15.2   0.0     2    27    28    52    27    85 0.77 AAA domain
Arch_ATPase          PF01637.13   234 sp|P15031|FECE_ECOLI -            255    0.0022   17.7   0.0   1   2   9.5e-05     0.047   13.3   0.0    20    44    28    52    18    74 0.81 Archaeal ATPase
AAA_5                PF07728.9    139 sp|P15031|FECE_ECOLI -            255    0.0022   17.6   0.1   1   2   9.4e-05     0.047   13.4   0.0     4    30    33    60    31    95 0.83 AAA domain (dynein-related subfamily)
Adeno_IVa2           PF02456.10   370 sp|P15031|FECE_ECOLI -            255    0.0076   14.9   0.0   1   1   4.3e-05     0.021   13.4   0.0    89   133    30    72    14    80 0.86 Adenovirus IVa2 protein
AAA_22               PF13401.1    131 sp|P15031|FECE_ECOLI -            255    0.0091   16.1   0.1   1   1   5.8e-05     0.029   14.5   0.0     4    27    28    51    23    98 0.87 AAA domain
AAA_25               PF13481.1    194 sp|P15031|FECE_ECOLI -            255     0.013   14.8   0.2   1   1   4.1e-05      0.02   14.2   0.2    30    65    25    62    14   196 0.83 AAA domain
Rad17                PF03215.10   519 sp|P15031|FECE_ECOLI -            255     0.026   13.2   0.1   1   1   7.2e-05     0.035   12.7   0.1    43    73    26    56    14    76 0.78 Rad17 cell cycle checkpoint protein
AAA_19               PF13245.1     76 sp|P15031|FECE_ECOLI -            255     0.028   14.1   0.1   1   1   0.00019     0.092   12.5   0.0    10    37    28    54    21    89 0.83 Part of AAA domain
DUF2813              PF11398.3    373 sp|P15031|FECE_ECOLI -            255     0.035   13.2   0.1   1   1   0.00016      0.08   12.0   0.0    17    49    23    55    18    61 0.86 Protein of unknown function (DUF2813)
AAA_10               PF12846.2    304 sp|P15031|FECE_ECOLI -            255     0.038   13.4   0.0   1   1   0.00016     0.077   12.4   0.0     4    35    31    62    28   155 0.70 AAA-like domain
AAA_28               PF13521.1    163 sp|P15031|FECE_ECOLI -            255     0.038   13.9   0.0   1   1   0.00016     0.079   12.9   0.0     3    48    32    83    30   100 0.78 AAA domain
AAA_33               PF13671.1    143 sp|P15031|FECE_ECOLI -            255     0.049   13.5   0.3   1   1   0.00037      0.19   11.6   0.3     2    29    31    62    30   218 0.70 AAA domain
SMP_2                PF10144.4    210 sp|P15031|FECE_ECOLI -            255      0.05   12.7   0.0   1   1   0.00016     0.081   12.0   0.0    58   104   175   221   147   228 0.89 Bacterial virulence factor haemolysin
Mg_chelatase         PF01078.16   207 sp|P15031|FECE_ECOLI -            255     0.057   12.5   0.0   1   1   0.00021       0.1   11.7   0.0    26    67    32    73    13   103 0.80 Magnesium chelatase, subunit ChlI
ABC_ATPase           PF09818.4    448 sp|P15031|FECE_ECOLI -            255     0.062   11.8   0.0   1   2    0.0005      0.25    9.9   0.0   240   264    23    48     6    52 0.88 Predicted ATPase of the ABC class
MutS_V               PF00488.16   235 sp|P15031|FECE_ECOLI -            255     0.063   12.6   0.0   1   1   0.00022      0.11   11.8   0.0    30    73    15    57     7    74 0.84 MutS domain V
NACHT                PF05729.7    166 sp|P15031|FECE_ECOLI -            255     0.092   12.4   0.0   1   1   0.00036      0.18   11.4   0.0     3    24    31    52    29   100 0.85 NACHT domain
AAA_13               PF13166.1    712 sp|P15031|FECE_ECOLI -            255      0.11   10.9   0.0   1   1   0.00048      0.24    9.8   0.0    15    39    27    51    14    62 0.84 AAA domain
RNA_helicase         PF00910.17   107 sp|P15031|FECE_ECOLI -            255      0.11   12.6   0.0   1   1   0.00056      0.28   11.3   0.0     3    24    33    54    31    73 0.79 RNA helicase
ATP-synt_ab          PF00006.20   215 sp|P15031|FECE_ECOLI -            255      0.14   11.6   0.1   1   1   0.00075      0.37   10.2   0.1     7    76    20   212    14   231 0.66 ATP synthase alpha/beta family, nucleotide-binding domain
FecCD                PF01032.13   311 sp|P15029|FECD_ECOLI -            318   3.5e-94  315.1  27.1   1   1   2.9e-98   4.2e-94  314.8  27.1     2   311    13   316     9   316 0.98 FecCD transport family
NAD_binding_1        PF00175.16   109 sp|P28861|FENR_ECOLI -            248   6.8e-17   62.0   0.0   1   1     2e-20   9.7e-17   61.5   0.0     1   109   111   223   111   223 0.89 Oxidoreductase NAD-binding domain
FAD_binding_6        PF00970.19    99 sp|P28861|FENR_ECOLI -            248     3e-10   40.1   0.0   1   1   1.2e-13     6e-10   39.1   0.0     9    90    14    90     6    98 0.85 Oxidoreductase FAD-binding domain
NAD_binding_6        PF08030.7    156 sp|P28861|FENR_ECOLI -            248   0.00086   19.2   0.0   1   2   5.6e-06     0.028   14.3   0.0     1    84   106   182   106   207 0.88 Ferric reductase NAD binding domain
FeoB_N               PF02421.13   156 sp|P33650|FEOB_ECOLI -            773     7e-65  217.0   0.1   1   1   1.3e-67   1.4e-64  216.0   0.1     2   155     5   162     4   163 0.97 Ferrous iron transport protein B
Gate                 PF07670.9    109 sp|P33650|FEOB_ECOLI -            773   9.8e-48  160.5   9.9   1   2   1.1e-17   1.2e-14   54.0   3.6     3   106   352   443   350   450 0.94 Nucleoside recognition
Gate                 PF07670.9    109 sp|P33650|FEOB_ECOLI -            773   9.8e-48  160.5   9.9   2   2   6.3e-38   7.1e-35  119.2   0.4     1   107   512   689   512   691 0.99 Nucleoside recognition
FeoB_C               PF07664.7     54 sp|P33650|FEOB_ECOLI -            773   3.4e-21   74.3   2.1   1   1     3e-24   3.4e-21   74.3   2.1     1    54   454   507   454   507 0.99 Ferrous iron transport protein B C terminus
MMR_HSR1             PF01926.18   116 sp|P33650|FEOB_ECOLI -            773   2.3e-18   66.2   0.0   1   1   3.6e-21   4.1e-18   65.4   0.0     2   115     6   120     5   121 0.72 50S ribosome-binding GTPase
SRPRB                PF09439.5    181 sp|P33650|FEOB_ECOLI -            773   3.3e-06   26.4   0.0   1   1   4.8e-09   5.5e-06   25.7   0.0     5    71     5    72     1   126 0.67 Signal recognition particle receptor beta subunit
GTP_EFTU             PF00009.22   188 sp|P33650|FEOB_ECOLI -            773   1.4e-05   24.6   0.2   1   1     6e-07   0.00069   19.1   0.2     3   185     3   166     1   178 0.72 Elongation factor Tu GTP binding domain
Dynamin_N            PF00350.18   168 sp|P33650|FEOB_ECOLI -            773   0.00053   19.8   1.0   2   2   0.00028      0.32   10.7   0.2    96   140    45    97    36   111 0.82 Dynamin family
ATP_bind_1           PF03029.12   238 sp|P33650|FEOB_ECOLI -            773    0.0043   16.6   0.2   2   2   0.00012      0.13   11.7   0.1    89   172    48   128    32   142 0.81 Conserved hypothetical ATP binding protein
Miro                 PF08477.8    119 sp|P33650|FEOB_ECOLI -            773    0.0048   17.3   0.0   1   1   7.4e-06    0.0085   16.5   0.0     2   119     6   123     5   123 0.64 Miro-like protein
PduV-EutP            PF10662.4    143 sp|P33650|FEOB_ECOLI -            773     0.014   14.8   0.0   1   1   2.7e-05     0.031   13.7   0.0     4   137     6   159     1   165 0.63 Ethanolamine utilisation - propanediol utilisation
AIG1                 PF04548.11   212 sp|P33650|FEOB_ECOLI -            773     0.017   14.2   0.1   1   1   2.3e-05     0.026   13.6   0.1     2    97     5    99     4   110 0.85 AIG1 family
DUF258               PF03193.11   161 sp|P33650|FEOB_ECOLI -            773      0.22   10.6   0.6   1   1   0.00031      0.35   10.0   0.6    37    93     5    56     1    75 0.73 Protein of unknown function, DUF258
FeoC                 PF09012.5     69 sp|P64638|FEOC_ECOLI -             78   2.1e-15   56.1   0.4   1   1   8.3e-19   2.5e-15   55.9   0.4     1    65     3    69     3    75 0.92 FeoC like transcriptional regulator
TrmB                 PF01978.14    68 sp|P64638|FEOC_ECOLI -             78   3.5e-06   26.6   0.0   1   1   1.6e-09   4.7e-06   26.2   0.0    17    59    10    53     8    56 0.92 Sugar-specific transcriptional regulator TrmB
HTH_27               PF13463.1     68 sp|P64638|FEOC_ECOLI -             78     0.022   15.0   0.0   1   1   1.2e-05     0.034   14.4   0.0    14    46    12    44     3    55 0.84 Winged helix DNA-binding domain
DUF1395              PF07160.7    243 sp|P64638|FEOC_ECOLI -             78     0.034   13.6   0.0   1   1   1.2e-05     0.035   13.5   0.0     4    63     6    65     3    73 0.89 Protein of unknown function (DUF1395)
z-alpha              PF02295.12    66 sp|P64638|FEOC_ECOLI -             78     0.054   13.2   0.0   1   1   2.5e-05     0.073   12.8   0.0    23    57    19    53    16    54 0.88 Adenosine deaminase z-alpha domain
Peripla_BP_2         PF01497.13   238 sp|P0AEL6|FEPB_ECOLI -            318   8.6e-32  110.1   0.5   1   1   6.8e-36     1e-31  109.9   0.5     1   236    49   297    49   299 0.96 Periplasmic binding protein
TonB_dep_Rec         PF00593.19   277 sp|P05825|FEPA_ECOLI -            746     1e-34  120.7  14.7   1   1   1.4e-38     1e-34  120.7  14.7     1   276   465   744   464   745 0.92 TonB dependent receptor
Plug                 PF07715.10   108 sp|P05825|FEPA_ECOLI -            746   1.5e-28   99.2   3.0   1   1   2.2e-32   1.6e-28   99.1   1.5     8   108    49   163    43   163 0.96 TonB-dependent Receptor Plug Domain
ABC_tran             PF00005.22   137 sp|P23878|FEPC_ECOLI -            271   2.6e-34  118.4   0.0   1   1     8e-37   3.7e-34  117.9   0.0     2   136    24   171    23   172 0.97 ABC transporter
AAA_21               PF13304.1    303 sp|P23878|FEPC_ECOLI -            271   1.7e-09   38.0   0.0   1   2   1.6e-08   7.4e-06   26.1   0.0     1    22    35    56    35    83 0.92 AAA domain
AAA_21               PF13304.1    303 sp|P23878|FEPC_ECOLI -            271   1.7e-09   38.0   0.0   2   2    0.0011      0.52   10.2   0.0   233   289   140   194   106   205 0.79 AAA domain
SMC_N                PF02463.14   220 sp|P23878|FEPC_ECOLI -            271   4.6e-09   35.8   0.0   1   1   1.2e-09   5.3e-07   29.0   0.0    23   188    32   191    21   204 0.67 RecF/RecN/SMC N terminal domain
AAA_16               PF13191.1    185 sp|P23878|FEPC_ECOLI -            271   2.2e-07   31.0   0.1   1   1   7.2e-10   3.3e-07   30.4   0.1    18   175    27   188    21   212 0.69 AAA ATPase domain
AAA_29               PF13555.1     62 sp|P23878|FEPC_ECOLI -            271   5.7e-07   28.9   0.0   1   1   2.2e-09     1e-06   28.1   0.0    15    51    26    61    19    66 0.86 P-loop containing region of AAA domain
AAA_15               PF13175.1    415 sp|P23878|FEPC_ECOLI -            271   1.7e-05   24.1   0.0   1   2   0.00017      0.08   11.9   0.0    23    49    34    60    12    76 0.82 AAA ATPase domain
AAA_15               PF13175.1    415 sp|P23878|FEPC_ECOLI -            271   1.7e-05   24.1   0.0   2   2   0.00058      0.27   10.2   0.0   371   405   162   197   155   213 0.88 AAA ATPase domain
AAA_23               PF13476.1    202 sp|P23878|FEPC_ECOLI -            271   1.7e-05   25.2   0.0   1   1   6.8e-08   3.1e-05   24.3   0.0     7    38    17    52    15    62 0.85 AAA domain
AAA_28               PF13521.1    163 sp|P23878|FEPC_ECOLI -            271   5.9e-05   23.0   0.0   1   1   2.9e-07   0.00013   21.9   0.0     3    47    37    87    35   107 0.84 AAA domain
AAA_22               PF13401.1    131 sp|P23878|FEPC_ECOLI -            271   0.00027   21.1   0.3   1   2   2.5e-06    0.0012   19.0   0.2     5   110    34   188    28   202 0.63 AAA domain
AAA_25               PF13481.1    194 sp|P23878|FEPC_ECOLI -            271   0.00069   19.0   0.2   1   1   7.1e-06    0.0033   16.8   0.0    30    82    30    71    25   145 0.71 AAA domain
ABC_ATPase           PF09818.4    448 sp|P23878|FEPC_ECOLI -            271   0.00071   18.2   0.2   1   2   0.00016     0.075   11.6   0.0   241   266    29    55    21    71 0.83 Predicted ATPase of the ABC class
Mg_chelatase         PF01078.16   207 sp|P23878|FEPC_ECOLI -            271    0.0013   17.9   0.0   1   1     6e-06    0.0028   16.8   0.0     7    66    18    77    14   103 0.86 Magnesium chelatase, subunit ChlI
NACHT                PF05729.7    166 sp|P23878|FEPC_ECOLI -            271    0.0021   17.7   0.1   1   2     7e-05     0.033   13.8   0.0     3    23    36    56    34    64 0.86 NACHT domain
DUF258               PF03193.11   161 sp|P23878|FEPC_ECOLI -            271    0.0023   17.1   0.0   1   1   7.5e-06    0.0035   16.5   0.0    15    59    12    57     1   100 0.79 Protein of unknown function, DUF258
NYN                  PF01936.13   146 sp|P23878|FEPC_ECOLI -            271    0.0025   18.0   0.0   1   1   7.8e-06    0.0036   17.5   0.0     4   139    64   211    63   218 0.76 NYN domain
AAA_18               PF13238.1    129 sp|P23878|FEPC_ECOLI -            271    0.0043   17.3   0.0   1   1   3.7e-05     0.017   15.3   0.0     2    32    37    77    37   125 0.87 AAA domain
AAA_17               PF13207.1    121 sp|P23878|FEPC_ECOLI -            271    0.0066   17.2   0.1   1   1   3.8e-05     0.017   15.8   0.1     3    24    37    62    36   239 0.86 AAA domain
AAA_14               PF13173.1    128 sp|P23878|FEPC_ECOLI -            271     0.011   15.6   0.0   1   1   5.4e-05     0.025   14.4   0.0     4    25    35    56    32    93 0.74 AAA domain
AAA_5                PF07728.9    139 sp|P23878|FEPC_ECOLI -            271     0.012   15.3   0.3   1   1   0.00015     0.068   12.8   0.0     4    23    38    57    36    66 0.88 AAA domain (dynein-related subfamily)
Rad17                PF03215.10   519 sp|P23878|FEPC_ECOLI -            271     0.015   13.9   0.0   1   1   4.5e-05     0.021   13.5   0.0    50    73    38    61    26    90 0.81 Rad17 cell cycle checkpoint protein
ATP-synt_ab          PF00006.20   215 sp|P23878|FEPC_ECOLI -            271     0.019   14.4   0.0   1   2   0.00031      0.14   11.5   0.0    13    39    31    57    24    97 0.87 ATP synthase alpha/beta family, nucleotide-binding domain
MutS_V               PF00488.16   235 sp|P23878|FEPC_ECOLI -            271      0.03   13.7   0.0   1   1    0.0001     0.048   13.0   0.0    32    94    22    84    12    97 0.77 MutS domain V
RNA_helicase         PF00910.17   107 sp|P23878|FEPC_ECOLI -            271     0.033   14.3   0.0   1   1   0.00017     0.077   13.1   0.0     3    34    38    64    36    91 0.74 RNA helicase
Arch_ATPase          PF01637.13   234 sp|P23878|FEPC_ECOLI -            271     0.033   13.8   0.0   1   1   8.2e-05     0.038   13.6   0.0    22    44    35    57    28   207 0.89 Archaeal ATPase
AAA_33               PF13671.1    143 sp|P23878|FEPC_ECOLI -            271     0.033   14.0   0.4   1   1   0.00018     0.084   12.7   0.3     3    24    37    58    35   173 0.65 AAA domain
AAA_10               PF12846.2    304 sp|P23878|FEPC_ECOLI -            271     0.043   13.2   0.2   1   1   0.00024      0.11   11.8   0.0     4    23    36    55    33    66 0.83 AAA-like domain
AAA_13               PF13166.1    712 sp|P23878|FEPC_ECOLI -            271     0.043   12.2   0.0   1   1   0.00016     0.074   11.5   0.0    16    40    33    57    17    80 0.80 AAA domain
MMR_HSR1             PF01926.18   116 sp|P23878|FEPC_ECOLI -            271     0.063   13.2   0.1   1   1   0.00028      0.13   12.2   0.1     3    21    37    55    35   200 0.84 50S ribosome-binding GTPase
Adeno_IVa2           PF02456.10   370 sp|P23878|FEPC_ECOLI -            271     0.094   11.3   0.0   1   1   0.00073      0.34    9.5   0.0    90   107    36    53    19    68 0.84 Adenovirus IVa2 protein
MobB                 PF03205.9    140 sp|P23878|FEPC_ECOLI -            271     0.098   12.3   0.0   1   1   0.00058      0.27   10.9   0.0     4    25    37    58    34    75 0.83 Molybdopterin guanine dinucleotide synthesis protein B
FecCD                PF01032.13   311 sp|P23877|FEPG_ECOLI -            330   1.8e-82  276.6  41.8   1   1   1.4e-86   2.1e-82  276.4  41.8     2   310    19   324    13   325 0.98 FecCD transport family
Wzz                  PF02706.10   152 sp|P26266|FEPE_ECOLI -            377   4.4e-25   88.2   0.9   1   2   1.2e-28   4.4e-25   88.2   0.9     1   150    25   173    25   175 0.92 Chain length determinant protein
DUF743               PF05332.6    105 sp|P26266|FEPE_ECOLI -            377     0.002   18.0   0.1   1   1   1.2e-06    0.0043   16.9   0.1    25    87   202   264   197   274 0.89 Protein of unknown function (DUF743)
GNVR                 PF13807.1     82 sp|P26266|FEPE_ECOLI -            377     0.005   16.5   1.4   1   1   1.5e-06    0.0055   16.4   0.0    55    81   335   361   298   362 0.86 G-rich domain on putative tyrosine kinase
FecCD                PF01032.13   311 sp|P23876|FEPD_ECOLI -            334   1.7e-89  299.7  34.9   1   1   1.4e-93   2.1e-89  299.4  34.9     1   311    19   328    18   328 0.99 FecCD transport family
Fer2                 PF00111.22    78 sp|P0A9R4|FER_ECOLI  -            111   6.3e-16   57.9   3.5   1   1   1.1e-19   8.3e-16   57.5   3.5     5    78    14    92    11    92 0.90 2Fe-2S iron-sulfur cluster binding domain
Fer2_4               PF13510.1     82 sp|P0A9R4|FER_ECOLI  -            111    0.0022   17.7   0.9   1   1   4.6e-07    0.0034   17.1   0.9     9    38    15    44    11   100 0.85 2Fe-2S iron-sulfur cluster binding domain
Esterase             PF00756.15   251 sp|P13039|FES_ECOLI  -            400   8.4e-50  169.5   0.0   1   1     4e-53   8.4e-50  169.5   0.0     1   251   172   391   172   391 0.98 Putative esterase
DUF3327              PF11806.3    122 sp|P13039|FES_ECOLI  -            400   1.3e-35  122.3   2.6   1   2   1.3e-38   2.8e-35  121.2   0.5     3   121    29   155    21   156 0.97 Domain of unknown function (DUF3327)
Peptidase_S9         PF00326.16   213 sp|P13039|FES_ECOLI  -            400   0.00024   20.3   0.1   1   1   1.9e-07   0.00041   19.6   0.1    63   101   272   310   262   321 0.93 Prolyl oligopeptidase family
Abhydrolase_6        PF12697.2    228 sp|P13039|FES_ECOLI  -            400     0.001   18.9   0.2   1   1   9.5e-07     0.002   18.0   0.2    57   109   259   336   176   397 0.71 Alpha/beta hydrolase family
Abhydrolase_2        PF02230.11   216 sp|P13039|FES_ECOLI  -            400     0.011   15.1   0.0   2   2   2.2e-05     0.046   13.1   0.0   104   141   272   309   254   319 0.89 Phospholipase/Carboxylesterase
Abhydrolase_5        PF12695.2    145 sp|P13039|FES_ECOLI  -            400       0.1   12.3   0.0   1   1   7.3e-05      0.15   11.7   0.0    57    94   269   310   200   374 0.73 Alpha/beta hydrolase family
Esterase_phd         PF10503.4    220 sp|P13039|FES_ECOLI  -            400      0.16   11.1   0.2   2   2    0.0004      0.84    8.8   0.0    95   131   271   307   255   329 0.85 Esterase PHB depolymerase
ABC_tran             PF00005.22   137 sp|P77279|FETA_ECOLI -            225   2.1e-31  109.0   0.0   1   1   6.7e-34     3e-31  108.5   0.0     1   137    23   166    23   166 0.94 ABC transporter
SMC_N                PF02463.14   220 sp|P77279|FETA_ECOLI -            225   1.6e-10   40.6   0.5   1   2    0.0017      0.76    8.9   0.1    25    43    34    52    22    65 0.83 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|P77279|FETA_ECOLI -            225   1.6e-10   40.6   0.5   2   2   4.9e-10   2.2e-07   30.3   0.0   136   214   137   213    72   219 0.83 RecF/RecN/SMC N terminal domain
AAA_21               PF13304.1    303 sp|P77279|FETA_ECOLI -            225   7.8e-07   29.3   1.1   1   1   1.9e-07   8.5e-05   22.6   1.1     3   297    37   196    37   202 0.75 AAA domain
AAA                  PF00004.24   132 sp|P77279|FETA_ECOLI -            225     4e-06   27.0   1.4   1   1   1.4e-07   6.2e-05   23.2   1.4     2   118    37   204    36   207 0.68 ATPase family associated with various cellular activities (AAA)
Rad17                PF03215.10   519 sp|P77279|FETA_ECOLI -            225     6e-06   25.2   1.1   1   2   1.4e-06   0.00063   18.5   0.1    47    67    35    55    19    63 0.82 Rad17 cell cycle checkpoint protein
AAA_14               PF13173.1    128 sp|P77279|FETA_ECOLI -            225   1.3e-05   25.0   0.1   1   1   2.5e-06    0.0011   18.8   0.1     3    44    34    75    32   209 0.85 AAA domain
AAA_29               PF13555.1     62 sp|P77279|FETA_ECOLI -            225   3.9e-05   23.0   0.1   1   1   1.9e-07   8.4e-05   22.0   0.1    20    51    31    61    22    67 0.82 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|P77279|FETA_ECOLI -            225   7.7e-05   22.7   0.0   1   1   2.6e-07   0.00012   22.1   0.0    23   131    32   144    20   194 0.54 AAA ATPase domain
Adeno_IVa2           PF02456.10   370 sp|P77279|FETA_ECOLI -            225   0.00011   20.9   0.0   1   1     4e-07   0.00018   20.2   0.0    71   132    15    76     3    86 0.79 Adenovirus IVa2 protein
AAA_22               PF13401.1    131 sp|P77279|FETA_ECOLI -            225   0.00017   21.7   0.6   1   1   2.9e-06    0.0013   18.8   0.6     7   120    36   192    30   203 0.64 AAA domain
AAA_10               PF12846.2    304 sp|P77279|FETA_ECOLI -            225   0.00019   20.9   0.5   1   2   0.00021     0.094   12.1   0.2     4    21    36    53    34    65 0.87 AAA-like domain
NTPase_1             PF03266.10   168 sp|P77279|FETA_ECOLI -            225   0.00039   20.1   3.0   1   2   0.00017     0.079   12.6   0.4     3    23    37    57    36    64 0.88 NTPase
DUF258               PF03193.11   161 sp|P77279|FETA_ECOLI -            225   0.00051   19.2   0.0   1   1   1.9e-06   0.00084   18.5   0.0    21    57    18    55     5    89 0.86 Protein of unknown function, DUF258
AAA_18               PF13238.1    129 sp|P77279|FETA_ECOLI -            225   0.00059   20.1   0.1   1   1   2.9e-06    0.0013   19.0   0.0     2    44    37    79    37    89 0.85 AAA domain
AAA_17               PF13207.1    121 sp|P77279|FETA_ECOLI -            225   0.00089   20.0   0.6   1   1   4.3e-06    0.0019   18.9   0.6     3    22    37    56    36   210 0.86 AAA domain
AAA_25               PF13481.1    194 sp|P77279|FETA_ECOLI -            225    0.0009   18.6   0.7   1   1   1.9e-05    0.0085   15.5   0.7    30    94    30    82    20   200 0.59 AAA domain
AAA_11               PF13086.1    236 sp|P77279|FETA_ECOLI -            225    0.0011   18.5   0.0   1   1   3.6e-06    0.0016   18.0   0.0     7   103    23   206    19   222 0.83 AAA domain
AAA_23               PF13476.1    202 sp|P77279|FETA_ECOLI -            225    0.0014   19.0   0.9   1   1     5e-06    0.0023   18.3   0.9     2    44     8    58     8   206 0.74 AAA domain
NACHT                PF05729.7    166 sp|P77279|FETA_ECOLI -            225    0.0016   18.0   0.4   1   2   0.00014     0.063   12.9   0.1     4    24    37    57    35    63 0.89 NACHT domain
AAA_5                PF07728.9    139 sp|P77279|FETA_ECOLI -            225    0.0027   17.4   0.2   1   3   0.00031      0.14   11.8   0.0     3    24    37    59    36    71 0.84 AAA domain (dynein-related subfamily)
MutS_V               PF00488.16   235 sp|P77279|FETA_ECOLI -            225    0.0033   16.8   0.1   1   1   1.9e-05    0.0087   15.4   0.0    30    65    20    55    10    59 0.88 MutS domain V
T2SE                 PF00437.15   272 sp|P77279|FETA_ECOLI -            225    0.0065   15.3   0.0   1   1   2.4e-05     0.011   14.6   0.0   114   156    19    61     2    91 0.77 Type II/IV secretion system protein
AAA_19               PF13245.1     76 sp|P77279|FETA_ECOLI -            225    0.0071   16.0   0.0   1   1   2.6e-05     0.012   15.3   0.0    14    36    37    61    29    91 0.76 Part of AAA domain
AAA_15               PF13175.1    415 sp|P77279|FETA_ECOLI -            225    0.0081   15.2   0.2   1   2   0.00025      0.11   11.5   0.0    14    54    25    67    11    91 0.72 AAA ATPase domain
Arch_ATPase          PF01637.13   234 sp|P77279|FETA_ECOLI -            225    0.0087   15.7   0.2   1   1   5.7e-05     0.026   14.2   0.0    14    42    29    55    20    75 0.80 Archaeal ATPase
AAA_28               PF13521.1    163 sp|P77279|FETA_ECOLI -            225     0.012   15.6   0.0   1   1     8e-05     0.036   14.0   0.0     4    25    38    64    36   119 0.71 AAA domain
Mg_chelatase         PF01078.16   207 sp|P77279|FETA_ECOLI -            225     0.016   14.4   0.0   1   1     6e-05     0.027   13.6   0.0    21    65    33    76    16    90 0.81 Magnesium chelatase, subunit ChlI
RNA_helicase         PF00910.17   107 sp|P77279|FETA_ECOLI -            225     0.018   15.2   0.1   1   1   0.00015     0.067   13.3   0.0     3    23    38    58    36    88 0.79 RNA helicase
AAA_30               PF13604.1    196 sp|P77279|FETA_ECOLI -            225     0.048   13.2   0.0   1   1   0.00021     0.094   12.2   0.0    19    44    34    59    27    80 0.85 AAA domain
MobB                 PF03205.9    140 sp|P77279|FETA_ECOLI -            225      0.12   12.0   0.8   1   1     0.001      0.45   10.2   0.2     4    24    37    57    35    65 0.89 Molybdopterin guanine dinucleotide synthesis protein B
Viral_helicase1      PF01443.13   234 sp|P77279|FETA_ECOLI -            225      0.15   11.5   0.1   1   1    0.0009      0.41   10.1   0.0     2    21    37    56    36    97 0.80 Viral (Superfamily 1) RNA helicase
UPF0014              PF03649.8    250 sp|P77307|FETB_ECOLI -            259    2e-119  397.3  18.0   1   1  3.2e-123  2.3e-119  397.1  18.0     2   250     3   247     2   247 0.99 Uncharacterised protein family (UPF0014)
Bax1-I               PF01027.15   205 sp|P77307|FETB_ECOLI -            259    0.0094   15.5  16.1   1   2   2.7e-05       0.2   11.2   9.5    27   112    25   136     6   146 0.54 Inhibitor of apoptosis-promoting Bax1
Iron_traffic         PF04362.9     88 sp|P0A8P3|FETP_ECOLI -             91   1.7e-41  139.5   1.1   1   1   1.2e-45   1.8e-41  139.4   1.1     1    88     1    88     1    88 0.99 Bacterial Fe(2+) trafficking
FecCD                PF01032.13   311 sp|P06972|FHUB_ECOLI -            660  1.9e-144  480.2  85.0   1   2   2.6e-72   1.3e-68  231.1  38.9     7   310    13   324     7   325 0.93 FecCD transport family
FecCD                PF01032.13   311 sp|P06972|FHUB_ECOLI -            660  1.9e-144  480.2  85.0   2   2   1.8e-79   9.1e-76  254.6  38.4     2   311   358   657   347   657 0.94 FecCD transport family
ABC-3                PF00950.12   258 sp|P06972|FHUB_ECOLI -            660    0.0023   17.2  19.9   4   4   4.7e-07    0.0023   17.2  19.9     9   251   398   651   390   657 0.71 ABC 3 transport family
ABC_tran             PF00005.22   137 sp|P07821|FHUC_ECOLI -            265   5.1e-33  114.2   0.0   1   1   7.5e-36   6.6e-33  113.9   0.0     1   137    27   176    27   176 0.98 ABC transporter
AAA_21               PF13304.1    303 sp|P07821|FHUC_ECOLI -            265   9.1e-09   35.6   0.0   1   2   4.4e-07   0.00039   20.4   0.0     1    21    39    59    39    80 0.85 AAA domain
AAA_21               PF13304.1    303 sp|P07821|FHUC_ECOLI -            265   9.1e-09   35.6   0.0   2   2   6.7e-05     0.059   13.3   0.0   235   298   146   207   124   211 0.85 AAA domain
SMC_N                PF02463.14   220 sp|P07821|FHUC_ECOLI -            265   1.5e-07   30.9   0.0   1   2   8.5e-05     0.074   12.2   0.0    25    42    38    55    28    59 0.84 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|P07821|FHUC_ECOLI -            265   1.5e-07   30.9   0.0   2   2   3.3e-06    0.0029   16.8   0.0   136   202   147   209    76   224 0.85 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P07821|FHUC_ECOLI -            265   0.00011   21.6   0.2   1   1   2.5e-07   0.00022   20.6   0.2    21    40    35    54    26    56 0.87 P-loop containing region of AAA domain
AAA_22               PF13401.1    131 sp|P07821|FHUC_ECOLI -            265    0.0014   18.7   0.2   1   1   1.1e-05    0.0097   16.0   0.2     9   122    42   204    36   213 0.70 AAA domain
AAA_23               PF13476.1    202 sp|P07821|FHUC_ECOLI -            265    0.0046   17.3   0.2   1   1   7.7e-06    0.0067   16.7   0.2    16    38    33    56    23    58 0.82 AAA domain
AAA_25               PF13481.1    194 sp|P07821|FHUC_ECOLI -            265     0.012   15.0   0.2   1   2   7.2e-05     0.063   12.6   0.0    29    54    33    58     9    91 0.85 AAA domain
BCA_ABC_TP_C         PF12399.3     23 sp|P07821|FHUC_ECOLI -            265     0.019   14.6   0.1   1   1   4.4e-05     0.039   13.6   0.1     1    13   225   237   225   237 0.89 Branched-chain amino acid ATP-binding cassette transporter
DUF258               PF03193.11   161 sp|P07821|FHUC_ECOLI -            265     0.025   13.7   0.0   1   1   4.7e-05     0.041   13.0   0.0    35    65    37    67    14    81 0.85 Protein of unknown function, DUF258
AAA_33               PF13671.1    143 sp|P07821|FHUC_ECOLI -            265     0.028   14.2   0.0   1   1   6.6e-05     0.057   13.2   0.0     4    23    42    61    39    83 0.86 AAA domain
AAA_15               PF13175.1    415 sp|P07821|FHUC_ECOLI -            265     0.044   12.8   0.0   1   1   8.7e-05     0.076   12.0   0.0    23    42    38    57    13    86 0.82 AAA ATPase domain
AAA_17               PF13207.1    121 sp|P07821|FHUC_ECOLI -            265     0.044   14.5   0.1   1   1   8.1e-05     0.071   13.9   0.0     3    22    41    60    39   146 0.86 AAA domain
AAA_16               PF13191.1    185 sp|P07821|FHUC_ECOLI -            265      0.12   12.3   1.6   1   1   0.00035      0.31   11.0   1.6    28    52    41    66    25   208 0.61 AAA ATPase domain
TonB_dep_Rec         PF00593.19   277 sp|P16869|FHUE_ECOLI -            729   6.4e-30  105.0  22.2   1   1   8.6e-34   6.4e-30  105.0  22.2     1   276   493   727   493   728 0.85 TonB dependent receptor
Plug                 PF07715.10   108 sp|P16869|FHUE_ECOLI -            729   5.2e-14   52.4   0.4   1   1     7e-18   5.2e-14   52.4   0.4     2   106    75   175    74   177 0.93 TonB-dependent Receptor Plug Domain
Peripla_BP_2         PF01497.13   238 sp|P07822|FHUD_ECOLI -            296   8.9e-27   93.7   0.0   1   1   6.9e-31     1e-26   93.5   0.0     1   235    38   270    38   273 0.94 Periplasmic binding protein
TonB_dep_Rec         PF00593.19   277 sp|P06971|FHUA_ECOLI -            747   1.7e-27   97.0  10.2   1   1   2.4e-31   1.7e-27   97.0  10.2     1   277   510   746   510   746 0.98 TonB dependent receptor
Plug                 PF07715.10   108 sp|P06971|FHUA_ECOLI -            747   1.9e-21   76.3   0.1   1   1   5.9e-25   4.4e-21   75.2   0.1     2   107    76   180    75   181 0.94 TonB-dependent Receptor Plug Domain
Fic                  PF02661.13    97 sp|P20605|FIC_ECOLI  -            200   1.6e-14   54.3   0.1   1   1     2e-18   2.9e-14   53.5   0.1     6    96    58   152    55   153 0.96 Fic/DOC family
Cation_efflux        PF01545.16   285 sp|P69380|FIEF_ECOLI -            300   2.4e-65  220.4   5.4   1   1   3.7e-69   2.8e-65  220.2   5.4     2   283    14   289    13   291 0.97 Cation efflux family
DUF1129              PF06570.6    206 sp|P69380|FIEF_ECOLI -            300      0.02   14.2   0.2   2   2   2.7e-06      0.02   14.2   0.2    75   150    76   155    58   174 0.75 Protein of unknown function (DUF1129)
Fimbrial             PF00419.15   145 sp|P04128|FIMA1_ECOLI -            182     7e-21   74.9   9.7   1   1   6.4e-25   9.6e-21   74.5   9.7     1   145    33   182    33   182 0.85 Fimbrial protein
Phage_integrase      PF00589.17   173 sp|P0ADH5|FIMB_ECOLI -            200   8.7e-49  165.5   0.0   1   1   6.6e-53   9.9e-49  165.3   0.0     1   171    11   181    11   183 0.98 Phage integrase family
Usher                PF00577.15   552 sp|P30130|FIMD_ECOLI -            878  6.2e-222  738.2  26.9   1   1  1.5e-225  7.6e-222  737.9  26.9     1   552   208   790   208   790 0.99 Outer membrane usher protein
PapC_N               PF13954.1    146 sp|P30130|FIMD_ECOLI -            878   4.5e-48  162.5   0.0   1   1   2.4e-51   1.2e-47  161.1   0.0     2   146    48   194    47   194 0.98 PapC N-terminal domain
PapC_C               PF13953.1     68 sp|P30130|FIMD_ECOLI -            878   1.2e-27   95.3   0.1   1   1   1.1e-30   5.3e-27   93.2   0.1     1    67   800   865   800   866 0.97 PapC C-terminal domain
PapD_N               PF00345.15   122 sp|P31697|FIMC_ECOLI -            241   2.2e-40  137.2   0.1   1   1     5e-44   3.7e-40  136.4   0.1     1   121    37   156    37   157 0.91 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_C               PF02753.12    68 sp|P31697|FIMC_ECOLI -            241   2.9e-16   59.0   0.2   1   1   8.1e-20     6e-16   58.0   0.2     1    65   176   234   176   237 0.95 Pili assembly chaperone PapD, C-terminal domain
Phage_integrase      PF00589.17   173 sp|P0ADH7|FIME_ECOLI -            198   1.5e-46  158.1   0.6   1   1   2.4e-50   1.7e-46  158.0   0.6     1   172     5   177     5   178 0.98 Phage integrase family
ADSL_C               PF10397.4     81 sp|P0ADH7|FIME_ECOLI -            198     0.024   14.6   0.1   1   1   8.8e-06     0.065   13.2   0.0    18    65   111   170   103   185 0.81 Adenylosuccinate lyase C-terminus
Fimbrial             PF00419.15   145 sp|P08189|FIMF_ECOLI -            176     4e-21   75.7   3.8   1   1   6.5e-25   4.8e-21   75.4   3.8     1   145    27   176    27   176 0.93 Fimbrial protein
SCPU                 PF05229.10   139 sp|P08189|FIMF_ECOLI -            176    0.0087   16.1   1.8   1   1   1.7e-06     0.012   15.6   1.8     5   131    27   164    23   172 0.73 Spore Coat Protein U domain
FimH_man-bind        PF09160.5    147 sp|P08191|FIMH_ECOLI -            300   5.2e-57  191.8   0.2   1   1   1.9e-60   9.2e-57  191.0   0.2     1   147    24   168    24   168 0.99 FimH, mannose binding
Fimbrial             PF00419.15   145 sp|P08191|FIMH_ECOLI -            300   1.2e-09   38.5   7.6   2   2   2.5e-13   1.2e-09   38.5   7.6     7   145   173   300   167   300 0.85 Fimbrial protein
DUF1254              PF06863.7    128 sp|P08191|FIMH_ECOLI -            300    0.0084   15.9   3.3   2   2   2.4e-06     0.012   15.4   0.5    20    78   170   229   150   259 0.83 Protein of unknown function (DUF1254)
Fimbrial             PF00419.15   145 sp|P08190|FIMG_ECOLI -            167   1.7e-09   38.0   8.2   1   1     3e-13   2.2e-09   37.6   8.2     1   144    28   166    28   167 0.76 Fimbrial protein
DUF2574              PF10836.3     93 sp|P08190|FIMG_ECOLI -            167       0.1   12.2   3.6   1   3   1.2e-05     0.091   12.4   0.5    14    81    14    79     2    86 0.74 Protein of unknown function (DUF2574)
Fimbrial             PF00419.15   145 sp|P39264|FIMI_ECOLI -            179   7.4e-16   58.6   0.0   1   1   5.9e-20   8.7e-16   58.4   0.0     2   145    33   179    32   179 0.86 Fimbrial protein
HTH_8                PF02954.14    42 sp|P0A6R3|FIS_ECOLI  -             98   8.8e-15   53.9   0.4   1   1   4.4e-18   1.3e-14   53.4   0.4     2    42    55    95    54    95 0.98 Bacterial regulatory protein, Fis family
Phage_NinH           PF06322.6     64 sp|P0A6R3|FIS_ECOLI  -             98    0.0081   15.7   0.0   1   1   4.7e-06     0.014   15.0   0.0    10    37    64    92    58    96 0.87 Phage NinH protein
DUF3333              PF11812.3    155 sp|P0A6R3|FIS_ECOLI  -             98     0.053   13.5   0.2   1   1   2.1e-05     0.062   13.2   0.2    57   120     7    68     2    82 0.87 Domain of unknown function (DUF3333)
HTH_30               PF13556.1     59 sp|P0A6R3|FIS_ECOLI  -             98     0.056   13.0   0.1   2   2   4.7e-05      0.14   11.7   0.0    12    35    71    94    62    96 0.88 PucR C-terminal helix-turn-helix domain
WH2                  PF02205.15    30 sp|P0A6R3|FIS_ECOLI  -             98      0.13   11.8   0.6   1   1   7.5e-05      0.22   11.1   0.6     5    22    76    94    74    94 0.97 WH2 motif
TonB_dep_Rec         PF00593.19   277 sp|P75780|FIU_ECOLI  -            760   2.6e-35  122.7  13.3   1   1   5.2e-39   2.6e-35  122.7  13.3     1   276   514   758   514   759 0.91 TonB dependent receptor
Plug                 PF07715.10   108 sp|P75780|FIU_ECOLI  -            760   2.9e-20   72.6   3.3   1   1     2e-23     1e-19   70.8   3.3     2   107    68   168    67   169 0.95 TonB-dependent Receptor Plug Domain
PSII                 PF00421.14   437 sp|P75780|FIU_ECOLI  -            760     0.079   11.5   0.0   1   1   2.9e-05      0.14   10.6   0.0   265   390    53   194    29   201 0.73 Photosystem II protein
ETF                  PF01012.16   164 sp|P60566|FIXA_ECOLI -            256   5.4e-33  114.0   3.0   1   1   5.1e-37   7.6e-33  113.5   3.0     9   164    30   187    24   187 0.91 Electron transfer flavoprotein domain
ETF_alpha            PF00766.14    86 sp|P31574|FIXB_ECOLI -            313   7.2e-32  108.8   0.1   1   1   2.2e-35   1.6e-31  107.7   0.1     2    86   190   275   189   275 0.97 Electron transfer flavoprotein FAD-binding domain
ETF                  PF01012.16   164 sp|P31574|FIXB_ECOLI -            313   1.9e-19   69.9   0.6   1   2   4.5e-23   3.3e-19   69.1   0.1    19   163    19   153     6   154 0.91 Electron transfer flavoprotein domain
DAO                  PF01266.19   358 sp|P68644|FIXC_ECOLI -            428   3.3e-23   82.1   3.5   1   2   6.7e-10   5.2e-07   28.8   0.5     1    39     7    45     7    85 0.83 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|P68644|FIXC_ECOLI -            428   3.3e-23   82.1   3.5   2   2   1.6e-17   1.2e-14   53.9   0.1   146   356   107   328    99   330 0.74 FAD dependent oxidoreductase
FAD_binding_3        PF01494.14   356 sp|P68644|FIXC_ECOLI -            428   4.9e-12   45.5   6.5   1   1   4.6e-14   3.6e-11   42.7   6.5     3   197     7   189     6   311 0.66 FAD binding domain
FAD_oxidored         PF12831.2    428 sp|P68644|FIXC_ECOLI -            428   9.3e-10   38.1   1.2   1   2   1.2e-12   9.3e-10   38.1   1.2     1   143     7   157     7   172 0.77 FAD dependent oxidoreductase
FAD_binding_2        PF00890.19   417 sp|P68644|FIXC_ECOLI -            428   2.2e-09   36.6   8.6   1   2   5.7e-09   4.5e-06   25.7   4.2     1    35     7    41     7    55 0.91 FAD binding domain
FAD_binding_2        PF00890.19   417 sp|P68644|FIXC_ECOLI -            428   2.2e-09   36.6   8.6   2   2   5.1e-05      0.04   12.7   0.1   147   200   114   161   104   185 0.83 FAD binding domain
Thi4                 PF01946.12   230 sp|P68644|FIXC_ECOLI -            428   2.9e-09   36.3   1.5   1   2   3.1e-09   2.4e-06   26.8   0.4    18    64     6    52     2    57 0.94 Thi4 family
NAD_binding_8        PF13450.1     68 sp|P68644|FIXC_ECOLI -            428   5.4e-09   35.9   1.3   1   2   5.6e-11   4.3e-08   33.0   0.6     1    34    10    43    10    74 0.75 NAD(P)-binding Rossmann-like domain
HI0933_like          PF03486.9    409 sp|P68644|FIXC_ECOLI -            428   6.6e-09   34.7   4.1   1   1   3.1e-11   2.4e-08   32.8   4.1     2   167     7   165     6   185 0.86 HI0933-like protein
GIDA                 PF01134.17   392 sp|P68644|FIXC_ECOLI -            428   8.2e-08   31.5   0.8   1   1     1e-10   8.2e-08   31.5   0.8     1   150     7   162     7   194 0.82 Glucose inhibited division protein A
Trp_halogenase       PF04820.9    454 sp|P68644|FIXC_ECOLI -            428   1.1e-07   30.8   3.9   1   2   0.00032      0.25    9.9   1.6     3    33     9    36     7    43 0.91 Tryptophan halogenase
Trp_halogenase       PF04820.9    454 sp|P68644|FIXC_ECOLI -            428   1.1e-07   30.8   3.9   2   2   1.3e-07    0.0001   21.1   0.0   140   216    90   169    61   186 0.83 Tryptophan halogenase
Pyr_redox_2          PF07992.9    201 sp|P68644|FIXC_ECOLI -            428   1.3e-07   31.7   0.2   1   1   3.3e-10   2.6e-07   30.7   0.2     1   125     7   167     7   200 0.84 Pyridine nucleotide-disulphide oxidoreductase
GMC_oxred_N          PF00732.14   296 sp|P68644|FIXC_ECOLI -            428   1.3e-06   27.8   0.1   2   2   1.8e-06    0.0014   17.8   0.0   193   245   108   158    90   169 0.82 GMC oxidoreductase
Lycopene_cycl        PF05834.7    374 sp|P68644|FIXC_ECOLI -            428   6.2e-06   25.3   2.0   1   1   4.2e-08   3.3e-05   22.9   2.0     1   146     7   168     7   186 0.77 Lycopene cyclase protein
Pyr_redox            PF00070.22    80 sp|P68644|FIXC_ECOLI -            428   2.3e-05   24.6   1.7   1   2     1e-05    0.0081   16.5   0.8     3    34     9    40     7    57 0.89 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P68644|FIXC_ECOLI -            428   7.5e-05   22.8   0.1   1   1   1.8e-07   0.00014   21.9   0.1     1   136     9   162     9   196 0.72 Pyridine nucleotide-disulphide oxidoreductase
GDI                  PF00996.13   439 sp|P68644|FIXC_ECOLI -            428    0.0001   20.7   0.3   1   2   6.7e-05     0.053   11.8   0.0     3    42     4    43     1    57 0.88 GDP dissociation inhibitor
NAD_binding_9        PF13454.1    156 sp|P68644|FIXC_ECOLI -            428   0.00097   18.9   0.5   1   1   3.7e-06    0.0029   17.4   0.5     1   154     9   161     9   163 0.70 FAD-NAD(P)-binding
ApbA                 PF02558.11   151 sp|P68644|FIXC_ECOLI -            428    0.0062   15.9   0.1   1   1   1.5e-05     0.011   15.1   0.1     2    52     9    59     8    90 0.84 Ketopantoate reductase PanE/ApbA
3HCDH_N              PF02737.13   180 sp|P68644|FIXC_ECOLI -            428     0.011   15.4   3.5   1   2   4.7e-05     0.037   13.6   0.8     3    36     9    42     7    59 0.87 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Fer4_10              PF13237.1     52 sp|P68646|FIXX_ECOLI -             95   0.00099   18.8   0.5   1   1   3.3e-07    0.0016   18.1   0.5    16    48    40    70    40    71 0.90 4Fe-4S dicluster domain
Fer4_7               PF12838.2     52 sp|P68646|FIXX_ECOLI -             95    0.0049   17.2   0.2   1   1   1.9e-06    0.0092   16.3   0.2     9    44    40    69    38    71 0.92 4Fe-4S dicluster domain
Fer4_2               PF12797.2     22 sp|P68646|FIXX_ECOLI -             95      0.24   11.4   0.8   2   2   4.8e-05      0.24   11.4   0.8     4    17    57    70    54    71 0.87 4Fe-4S binding domain
FKBP_C               PF00254.23    94 sp|P0A9L3|FKBB_ECOLI -            206   3.8e-27   94.1   0.0   1   1   9.5e-31     7e-27   93.2   0.0     5    94   117   203   114   203 0.96 FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_N               PF01346.13   124 sp|P0A9L3|FKBB_ECOLI -            206   1.3e-23   83.3   0.0   1   1   2.2e-27   1.6e-23   83.0   0.0    17   124     5   108     1   108 0.96 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
FKBP_N               PF01346.13   124 sp|P45523|FKBA_ECOLI -            270   4.9e-33  113.8  12.5   1   1     1e-36   7.4e-33  113.2  12.5     4   124    26   152    23   152 0.94 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
FKBP_C               PF00254.23    94 sp|P45523|FKBA_ECOLI -            270   1.6e-30  104.9   0.2   2   2   1.5e-32   1.1e-28   99.0   0.0     4    94   160   246   157   246 0.96 FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C               PF00254.23    94 sp|P0AEM0|FKBX_ECOLI -            149   1.3e-16   60.4   0.0   1   1   2.4e-20   1.8e-16   59.9   0.0     4    94     4   141     2   141 0.87 FKBP-type peptidyl-prolyl cis-trans isomerase
CHMI                 PF02962.10   124 sp|P0AEM0|FKBX_ECOLI -            149      0.08   13.0   0.0   1   1   2.1e-05      0.16   12.1   0.0    55   102     7    55     1    62 0.84 5-carboxymethyl-2-hydroxymuconate isomerase
Flavodoxin_1         PF00258.20   143 sp|P61949|FLAV_ECOLI -            176   1.2e-33  116.1   0.1   1   1   4.6e-37   1.4e-33  115.9   0.1     1   143     6   160     6   160 0.95 Flavodoxin
Flavodoxin_3         PF12641.2    160 sp|P61949|FLAV_ECOLI -            176   1.1e-11   44.3   0.0   1   1   4.6e-15   1.4e-11   44.1   0.0     2   110     6   124     5   164 0.85 Flavodoxin domain
Flavodoxin_5         PF12724.2    143 sp|P61949|FLAV_ECOLI -            176   4.4e-08   33.2   0.0   1   1   2.1e-11   6.1e-08   32.7   0.0     2    84     6    89     5   108 0.83 Flavodoxin domain
Flavodoxin_4         PF12682.2    156 sp|P61949|FLAV_ECOLI -            176   1.6e-07   30.8   0.1   1   3   0.00013       0.4   10.0   0.0     6    42     8    44     3    45 0.85 Flavodoxin
Flavodoxin_4         PF12682.2    156 sp|P61949|FLAV_ECOLI -            176   1.6e-07   30.8   0.1   2   3   9.7e-08   0.00029   20.2   0.0    66   111    39    88    34   115 0.79 Flavodoxin
Tenui_NCP            PF04876.7    175 sp|P61949|FLAV_ECOLI -            176     0.074   12.5   0.0   1   1   4.6e-05      0.14   11.7   0.0   124   166    17    59    13    63 0.93 Tenuivirus major non-capsid protein
Flavodoxin_1         PF00258.20   143 sp|P0ABY4|FLAW_ECOLI -            173   5.2e-28   97.8   0.0   1   1   8.1e-32     6e-28   97.6   0.0     1   143     5   160     5   160 0.94 Flavodoxin
Flavodoxin_3         PF12641.2    160 sp|P0ABY4|FLAW_ECOLI -            173   0.00079   18.8   0.0   1   2   2.3e-07    0.0017   17.7   0.0     3    67     6    74     4   124 0.78 Flavodoxin domain
SAF_2                PF13144.1    196 sp|P75933|FLGA_ECOLI -            219   5.3e-41  140.2   0.4   1   1   1.2e-44     6e-41  140.1   0.4     3   194    26   215    24   217 0.93 SAF-like
SAF                  PF08666.7     63 sp|P75933|FLGA_ECOLI -            219   1.9e-08   34.5   0.0   1   2   1.2e-11     6e-08   32.9   0.0     2    61    96   155    95   157 0.94 SAF domain
ACP_syn_III_C        PF08541.5     90 sp|P75933|FLGA_ECOLI -            219    0.0018   18.2   0.0   2   2   7.5e-05      0.37   10.8   0.0    52    84   148   180   145   182 0.92 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Flg_bb_rod           PF00460.15    31 sp|P0ABW9|FLGB_ECOLI -            138   9.3e-13   47.5   0.2   1   1     3e-16   2.3e-12   46.3   0.2     1    31     9    39     9    39 0.98 Flagella basal body rod protein
Flagellin_C          PF00700.16    86 sp|P0ABW9|FLGB_ECOLI -            138     0.031   14.4   3.1   2   2   1.6e-05      0.12   12.5   0.1    48    78    99   130    84   135 0.83 Bacterial flagellin C-terminal helical region
FlgD                 PF03963.9     82 sp|P75936|FLGD_ECOLI -            231   1.1e-24   86.3   5.1   1   2   1.4e-27   5.2e-24   84.1   4.0     7    81     7    79     2    80 0.86 Flagellar hook capping protein - N-terminal region
FlgD_ig              PF13860.1     81 sp|P75936|FLGD_ECOLI -            231   2.6e-21   75.1   2.5   1   1     7e-25   2.6e-21   75.1   2.5     9    81   119   189   105   189 0.91 FlgD Ig-like domain
FLgD_tudor           PF13861.1     61 sp|P75936|FLGD_ECOLI -            231   4.8e-15   55.3   0.0   1   1   4.4e-18   1.6e-14   53.6   0.0     1    60    86   230    86   231 0.98 FlgD Tudor-like domain
DUF2271              PF10029.4    139 sp|P75936|FLGD_ECOLI -            231     0.022   14.2   0.0   2   2   2.1e-05     0.077   12.4   0.0    76   120   157   199   155   213 0.86 Predicted periplasmic protein (DUF2271)
Flg_bbr_C            PF06429.8     74 sp|P0ABX2|FLGC_ECOLI -            134   1.7e-12   47.0   3.0   1   1   3.6e-16   2.7e-12   46.4   3.0    29    73    87   131    10   132 0.91 Flagellar basal body rod FlgEFG protein C-terminal
Flg_bb_rod           PF00460.15    31 sp|P0ABX2|FLGC_ECOLI -            134   2.9e-11   42.8   1.2   1   2   3.9e-15   2.9e-11   42.8   1.2     1    30     7    37     7    38 0.95 Flagella basal body rod protein
FlaE                 PF07559.9    130 sp|P75937|FLGE_ECOLI -            402   3.1e-22   79.6  11.7   2   3   6.2e-26   3.1e-22   79.6  11.7     1   130   170   283   170   283 0.92 Flagellar basal body protein FlaE
Flg_bbr_C            PF06429.8     74 sp|P75937|FLGE_ECOLI -            402   4.4e-21   74.5   1.6   1   1   4.6e-24   2.3e-20   72.2   1.6     2    74   324   401   323   401 0.92 Flagellar basal body rod FlgEFG protein C-terminal
Flg_bb_rod           PF00460.15    31 sp|P75937|FLGE_ECOLI -            402   1.1e-11   44.2   4.1   1   3   2.1e-15   1.1e-11   44.2   4.1     2    31     4    33     3    33 0.96 Flagella basal body rod protein
Flg_bbr_C            PF06429.8     74 sp|P75938|FLGF_ECOLI -            251   9.4e-21   73.5   3.2   2   2   1.7e-24   1.3e-20   73.1   0.8     2    74   170   247   169   247 0.89 Flagellar basal body rod FlgEFG protein C-terminal
Flg_bb_rod           PF00460.15    31 sp|P75938|FLGF_ECOLI -            251   2.3e-10   39.9   3.3   1   2   3.2e-14   2.3e-10   39.9   3.3     1    31     5    35     5    35 0.97 Flagella basal body rod protein
Flg_bbr_C            PF06429.8     74 sp|P0ABX5|FLGG_ECOLI -            260   5.9e-27   93.3   3.1   2   2   1.6e-30   1.2e-26   92.4   1.9     2    74   183   260   182   260 0.91 Flagellar basal body rod FlgEFG protein C-terminal
Flg_bb_rod           PF00460.15    31 sp|P0ABX5|FLGG_ECOLI -            260   3.2e-14   52.2   1.2   1   1   1.1e-17     8e-14   50.9   1.2     1    31     5    35     5    35 0.98 Flagella basal body rod protein
FlgH                 PF02107.11   180 sp|P0A6S0|FLGH_ECOLI -            232   3.7e-69  231.9   0.3   1   1   2.9e-73   4.3e-69  231.6   0.3     4   180    44   231    41   231 0.95 Flagellar L-ring protein
FlgI                 PF02119.11   342 sp|P0A6S3|FLGI_ECOLI -            365  3.5e-138  459.9  15.5   1   1  1.3e-141  3.9e-138  459.7  15.5     1   342    21   365    21   365 0.99 Flagellar P-ring protein
DUF3244              PF11589.3    106 sp|P0A6S3|FLGI_ECOLI -            365      0.01   15.5   0.1   1   1   7.5e-06     0.022   14.4   0.1    28    95   219   288   195   291 0.83 Domain of unknown function (DUF3244)
SusE                 PF14292.1    122 sp|P0A6S3|FLGI_ECOLI -            365     0.044   13.6   0.2   1   2   0.00024       0.7    9.7   0.1    86   117    49    80    42    85 0.79 SusE outer membrane protein
DASH_Hsk3            PF08227.6     45 sp|P0A6S3|FLGI_ECOLI -            365      0.15   12.3   1.5   1   1   8.1e-05      0.24   11.6   0.0    19    43     6    30     3    31 0.88 DASH complex subunit Hsk3 like
DUF848               PF05852.6    146 sp|P0A6S3|FLGI_ECOLI -            365      0.15   11.9   0.0   1   1   9.8e-05      0.29   10.9   0.0    12    68   279   337   274   357 0.84 Gammaherpesvirus protein of unknown function (DUF848)
Flagellin_N          PF00669.15   139 sp|P29744|FLGL_ECOLI -            317   4.7e-34  117.1   9.6   1   3   6.4e-38   4.7e-34  117.1   9.6     2   139     4   141     3   141 0.99 Bacterial flagellin N-terminal helical region
Flagellin_C          PF00700.16    86 sp|P29744|FLGL_ECOLI -            317    0.0068   16.5   3.1   3   3   9.2e-07    0.0068   16.5   3.1     5    84   237   314   219   315 0.88 Bacterial flagellin C-terminal helical region
Glucosaminidase      PF01832.15   136 sp|P75942|FLGJ_ECOLI -            313     2e-38  131.5   0.9   1   1   4.7e-42   3.5e-38  130.8   0.9     5   135   160   295   157   296 0.96 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
Rod-binding          PF10135.4     49 sp|P75942|FLGJ_ECOLI -            313   9.5e-20   70.3   2.8   1   1   3.1e-23   2.3e-19   69.1   2.8     1    49    50    97    50    97 0.99 Rod binding protein
FlgM                 PF04316.8     57 sp|P0AEM4|FLGM_ECOLI -             97   2.1e-11   43.5   0.5   1   1   2.2e-15   3.3e-11   42.9   0.4     2    56    40    89    25    90 0.84 Anti-sigma-28 factor, FlgM
Flg_bbr_C            PF06429.8     74 sp|P33235|FLGK_ECOLI -            547     6e-08   32.4   2.6   1   1   2.4e-11     6e-08   32.4   2.6    23    74   491   546   469   546 0.81 Flagellar basal body rod FlgEFG protein C-terminal
Flg_bb_rod           PF00460.15    31 sp|P33235|FLGK_ECOLI -            547   3.1e-05   23.5  11.0   1   1   1.2e-08   3.1e-05   23.5  11.0     1    31     5    35     5    35 0.97 Flagella basal body rod protein
Spc7                 PF08317.6    326 sp|P33235|FLGK_ECOLI -            547     0.057   12.0   0.3   1   1   5.3e-05      0.13   10.8   0.1   177   268    87   184    68   238 0.78 Spc7 kinetochore protein
DUF536               PF04394.9     45 sp|P33235|FLGK_ECOLI -            547     0.076   12.7   0.1   1   1   3.1e-05     0.076   12.7   0.1     3    31   174   211   172   212 0.94 Protein of unknown function, DUF536
MbeD_MobD            PF04899.7     70 sp|P33235|FLGK_ECOLI -            547      0.13   12.1   5.3   2   3   0.00037      0.92    9.4   0.0    49    69   167   187   148   188 0.86 MbeD/MobD like
FlgN                 PF05130.7    143 sp|P43533|FLGN_ECOLI -            138   8.9e-27   94.0  10.2   1   1   2.7e-30     1e-26   93.9  10.2     1   143     1   128     1   128 0.96 FlgN protein
CorA                 PF01544.13   292 sp|P43533|FLGN_ECOLI -            138     0.037   13.0   3.4   1   1   1.1e-05     0.042   12.8   3.4   122   210     3    92     1   111 0.85 CorA-like Mg2+ transporter protein
DUF745               PF05335.8    188 sp|P43533|FLGN_ECOLI -            138     0.047   13.2   3.3   1   1   1.5e-05     0.057   12.9   3.3    67   168     6   109     5   122 0.77 Protein of unknown function (DUF745)
Cluap1               PF10234.4    267 sp|P43533|FLGN_ECOLI -            138      0.46    9.6   5.2   1   1   0.00019      0.69    9.0   5.1   134   218     5    91     1   110 0.88 Clusterin-associated protein-1
FHIPEP               PF00771.15   658 sp|P76298|FLHA_ECOLI -            692  3.4e-271  901.3   4.2   1   1  2.6e-275  3.9e-271  901.1   4.2     2   657    31   682    30   683 0.98 FHIPEP family
Bac_export_2         PF01312.14   343 sp|P76299|FLHB_ECOLI -            382  4.7e-133  443.3   0.0   1   1  3.7e-137  5.5e-133  443.0   0.0     2   343     5   347     4   347 0.99 FlhB HrpN YscU SpaS Family
FlhC                 PF05280.6    176 sp|P0ABY7|FLHC_ECOLI -            192   2.7e-87  290.7   0.0   1   1     2e-91     3e-87  290.6   0.0     1   174     1   174     1   176 0.99 Flagellar transcriptional activator (FlhC)
FlhD                 PF05247.8    104 sp|P0A8S9|FLHD_ECOLI -            116   4.2e-45  152.0   4.6   1   1   3.2e-49   4.7e-45  151.8   4.6     1   102     1   102     1   104 0.98 Flagellar transcriptional activator (FlhD)
Flagellin_N          PF00669.15   139 sp|P04949|FLIC_ECOLI -            498   7.5e-42  142.4  19.5   1   2   4.5e-45   7.5e-42  142.4  19.5     1   137     5   141     5   143 0.99 Bacterial flagellin N-terminal helical region
Flagellin_C          PF00700.16    86 sp|P04949|FLIC_ECOLI -            498   1.2e-29  102.3   7.5   2   2     7e-33   1.2e-29  102.3   7.5     2    86   412   496   411   496 0.98 Bacterial flagellin C-terminal helical region
Flagellin_D3         PF08884.6     90 sp|P04949|FLIC_ECOLI -            498   4.6e-10   39.5  39.9   2   3   3.2e-13   5.3e-10   39.3  20.4     3    86   198   276   193   283 0.78 Flagellin D3 domain
RE_HpaII             PF09561.5    355 sp|P04949|FLIC_ECOLI -            498       1.3    8.1   6.2   1   1   9.3e-05      0.15   11.1   2.0    60   171    96   207    59   213 0.78 HpaII restriction endonuclease
Sigma70_r3           PF04539.11    78 sp|P0AEM6|FLIA_ECOLI -            239     1e-19   70.1   1.5   1   1   9.4e-23     2e-19   69.2   0.6     2    72    96   166    95   171 0.95 Sigma-70 region 3
Sigma70_r4           PF04545.11    50 sp|P0AEM6|FLIA_ECOLI -            239   7.6e-18   63.5   4.4   2   2   1.8e-20   3.9e-17   61.2   1.4     1    49   185   233   185   234 0.98 Sigma-70, region 4
Sigma70_r2           PF04542.9     71 sp|P0AEM6|FLIA_ECOLI -            239   2.4e-17   62.2   0.5   1   1   2.4e-20   5.1e-17   61.2   0.5     1    70    16    88    16    89 0.98 Sigma-70 region 2
Sigma70_r4_2         PF08281.7     54 sp|P0AEM6|FLIA_ECOLI -            239     4e-10   38.9   2.9   2   2   1.2e-12   2.6e-09   36.4   1.4     1    54   179   232   179   232 0.98 Sigma-70, region 4
UPF0147              PF03685.8     86 sp|P0AEM6|FLIA_ECOLI -            239    0.0057   16.4   0.6   1   1   8.9e-06     0.019   14.8   0.1    14    52    78   116    71   123 0.89 Uncharacterised protein family (UPF0147)
TFIIE_alpha          PF02002.12   105 sp|P0AEM6|FLIA_ECOLI -            239     0.026   14.0   1.4   1   2   1.8e-05     0.038   13.4   0.3    27    65   114   155    93   196 0.78 TFIIE alpha subunit
UPF0122              PF04297.9    101 sp|P0AEM6|FLIA_ECOLI -            239      0.03   14.3   0.2   2   2   8.6e-05      0.18   11.8   0.0    18    56   189   227   185   238 0.81 Putative helix-turn-helix protein, YlxM / p13 like
FliD_C               PF07195.7    239 sp|P24216|FLID_ECOLI -            468   2.3e-60  203.8  19.9   3   3   7.9e-64   2.3e-60  203.8  19.9     1   239   222   452   222   452 0.98 Flagellar hook-associated protein 2 C-terminus
FliD_N               PF02465.13    99 sp|P24216|FLID_ECOLI -            468   1.3e-23   83.1  12.7   1   3   4.5e-27   1.3e-23   83.1  12.7     1    99    10   107    10   107 0.96 Flagellar hook-associated protein 2 N-terminus
PE                   PF00934.15    94 sp|P24216|FLID_ECOLI -            468   0.00062   19.7  11.3   2   2   2.8e-07   0.00082   19.4   0.0    29    79   393   443   382   461 0.88 PE family
FliE                 PF02049.13    97 sp|P0A8T5|FLIE_ECOLI -            104   1.6e-27   95.3   4.5   1   1   1.2e-31   1.8e-27   95.1   4.5     6    97    12   104     5   104 0.95 Flagellar hook-basal body complex protein FliE
YscJ_FliF            PF01514.12   207 sp|P25798|FLIF_ECOLI -            552   1.2e-65  220.5   0.0   1   2   7.4e-69   5.5e-65  218.3   0.0     9   205    28   223    17   225 0.96 Secretory protein of YscJ/FliF family
YscJ_FliF_C          PF08345.6    160 sp|P25798|FLIF_ECOLI -            552   4.6e-52  176.2   4.9   2   3   6.1e-56   4.6e-52  176.2   4.9     1   160   250   429   250   429 0.88 Flagellar M-ring protein C-terminal
FliG_C               PF01706.11   110 sp|P0ABZ1|FLIG_ECOLI -            331   1.9e-39  134.0  15.8   4   4   1.1e-41   2.4e-38  130.5   3.3     2   109   216   323   215   324 0.98 FliG C-terminal domain
FliG_N               PF14842.1    108 sp|P0ABZ1|FLIG_ECOLI -            331   2.6e-33  114.3  16.6   1   3   1.6e-34   3.4e-31  107.5   3.3     3   103     2   102     1   107 0.96 FliG N-terminal domain
FliG_N               PF14842.1    108 sp|P0ABZ1|FLIG_ECOLI -            331   2.6e-33  114.3  16.6   2   3   7.6e-05      0.16   12.0   0.1    11    62   130   181   125   198 0.87 FliG N-terminal domain
FliG_M               PF14841.1     80 sp|P0ABZ1|FLIG_ECOLI -            331   1.9e-27   95.0  12.6   1   3   9.1e-05      0.19   11.7   0.6    20    70    13    63    10    70 0.86 FliG middle domain
FliG_M               PF14841.1     80 sp|P0ABZ1|FLIG_ECOLI -            331   1.9e-27   95.0  12.6   2   3   1.8e-28   3.8e-25   87.7   0.2     1    78   114   191   114   193 0.95 FliG middle domain
MgtE_N               PF03448.12   102 sp|P0ABZ1|FLIG_ECOLI -            331   7.4e-07   29.4  20.7   3   4     1e-05     0.022   15.0   0.8    24    82   100   158    96   163 0.80 MgtE intracellular N domain
Corona_S2            PF01601.11   610 sp|P0ABZ1|FLIG_ECOLI -            331    0.0045   15.1   0.1   1   1   3.1e-06    0.0065   14.6   0.1    91   183    34   121    18   127 0.87 Coronavirus S2 glycoprotein
DUF3654              PF12376.3    137 sp|P0ABZ1|FLIG_ECOLI -            331     0.031   14.0   0.1   1   1   3.1e-05     0.065   13.0   0.1    88   133   203   250   176   254 0.80 Protein of unknown function (DUF3654)
PhoU                 PF01895.14    88 sp|P0ABZ1|FLIG_ECOLI -            331       3.5    8.1   8.3   2   2   0.00022      0.48   10.9   2.2    15    62   214   276   200   319 0.71 PhoU domain
FliH                 PF02108.11   128 sp|P31068|FLIH_ECOLI -            228   5.8e-40  136.1   0.5   2   2   2.3e-43   5.8e-40  136.1   0.5     5   128    96   219    76   219 0.98 Flagellar assembly protein FliH
HrpE                 PF06188.7    191 sp|P31068|FLIH_ECOLI -            228   4.4e-08   33.0   6.8   1   1   4.1e-11     1e-07   31.9   6.8    36   182    60   211    30   222 0.73 HrpE/YscL/FliH and V-type ATPase subunit E
Yae1_N               PF09811.4     39 sp|P31068|FLIH_ECOLI -            228   1.8e-06   27.3  11.6   1   1   1.4e-09   3.4e-06   26.4  11.6     1    32    55    86    55    90 0.95 Essential protein Yae1, N terminal
NolV                 PF06635.7    207 sp|P31068|FLIH_ECOLI -            228    0.0035   16.5   3.0   1   2   1.3e-05     0.033   13.3   1.8    52   123    54   128    31   178 0.66 Nodulation protein NolV
P22_AR_C             PF10548.4     74 sp|P31068|FLIH_ECOLI -            228     0.024   14.5   0.0   1   1   2.6e-05     0.064   13.1   0.0    23    59    95   131    91   148 0.89 P22AR C-terminal domain
RMF                  PF04957.7     55 sp|P31068|FLIH_ECOLI -            228       2.2    8.0   7.7   1   2   0.00018      0.44   10.2   0.5    10    26    49    66    43    68 0.81 Ribosome modulation factor
Flg_hook             PF02120.11    85 sp|P52614|FLIK_ECOLI -            375   4.9e-19   67.7   6.8   1   1   1.2e-22   9.1e-19   66.9   6.8     4    84   248   328   245   336 0.91 Flagellar hook-length control protein FliK
Lipoprotein_16       PF03923.8    159 sp|P52614|FLIK_ECOLI -            375    0.0094   15.3   0.2   1   1   2.6e-06     0.019   14.3   0.2     5    70   250   318   247   325 0.88 Uncharacterized lipoprotein
FliJ                 PF02050.11   123 sp|P52613|FLIJ_ECOLI -            147   2.3e-32  111.6  20.2   1   1   5.8e-36   2.9e-32  111.3  20.2     1   122    19   141    19   142 0.98 Flagellar FliJ protein
Fib_alpha            PF08702.5    146 sp|P52613|FLIJ_ECOLI -            147      0.16   12.1   4.9   1   1   2.7e-05      0.13   12.3   3.6    50   132    16    99     5   104 0.68 Fibrinogen alpha/beta chain family
FliL                 PF03748.9     99 sp|P0ABX8|FLIL_ECOLI -            154   4.8e-23   81.0   0.0   1   1     4e-27     6e-23   80.7   0.0     1    98    54   153    54   154 0.94 Flagellar basal body-associated protein FliL
FliM                 PF02154.10   192 sp|P06974|FLIM_ECOLI -            334   1.3e-80  269.5   0.2   1   2   3.2e-84   2.4e-80  268.7   0.0     1   192    38   231    38   231 0.99 Flagellar motor switch protein FliM
SpoA                 PF01052.15    77 sp|P06974|FLIM_ECOLI -            334   5.8e-15   54.6   0.0   1   1   1.6e-18   1.2e-14   53.6   0.0     3    75   252   322   250   323 0.96 Surface presentation of antigens (SPOA)
FliO                 PF04347.8     84 sp|P22586|FLIO_ECOLI -            121   3.2e-24   84.7   0.2   1   1   5.8e-28   4.3e-24   84.3   0.2     1    84    36   117    36   117 0.88 Flagellar biosynthesis protein, FliO
OpcA_G6PD_assem      PF10128.4    270 sp|P22586|FLIO_ECOLI -            121     0.093   11.6   0.0   1   1   1.3e-05     0.093   11.6   0.0   162   203    21    67     8   121 0.63 Glucose-6-phosphate dehydrogenase subunit
ATP-synt_ab          PF00006.20   215 sp|P52612|FLII_ECOLI -            457   3.2e-69  232.7   0.0   1   1   1.2e-72   4.5e-69  232.2   0.0     1   215   161   373   161   373 1.00 ATP synthase alpha/beta family, nucleotide-binding domain
AAA_25               PF13481.1    194 sp|P52612|FLII_ECOLI -            457     0.047   13.0   0.2   1   1     3e-05      0.11   11.8   0.2     6   154   149   277   144   287 0.75 AAA domain
ABC_tran             PF00005.22   137 sp|P52612|FLII_ECOLI -            457     0.056   13.7   0.0   1   1   2.8e-05       0.1   12.8   0.0     6    37   170   201   166   247 0.87 ABC transporter
AAA_22               PF13401.1    131 sp|P52612|FLII_ECOLI -            457      0.15   12.1   0.0   1   1   7.8e-05      0.29   11.2   0.0     3    94   175   272   173   287 0.78 AAA domain
FliP                 PF00813.15   194 sp|P0AC05|FLIP_ECOLI -            245   4.1e-81  271.3  10.9   1   1   3.8e-85   5.6e-81  270.8  10.9     2   193    48   239    47   240 0.99 FliP family
Bac_export_3         PF01313.14    76 sp|P0AC07|FLIQ_ECOLI -             89   2.4e-30  103.9   9.5   1   1   5.7e-34   2.8e-30  103.8   9.5     2    75     5    78     4    79 0.97 Bacterial export proteins, family 3
PepSY_TM             PF03929.11    27 sp|P0AC07|FLIQ_ECOLI -             89     0.011   16.0   1.9   1   2   2.2e-06     0.011   16.0   1.9     7    26    16    35     7    36 0.88 PepSY-associated TM helix
TM_helix             PF05552.7     53 sp|P0AC07|FLIQ_ECOLI -             89     0.038   13.6   2.2   2   2   7.7e-06     0.038   13.6   2.2     1    42    38    80    38    84 0.88 Conserved TM helix
SpoA                 PF01052.15    77 sp|P15070|FLIN_ECOLI -            137   3.2e-24   84.3   0.8   1   1   5.3e-28     4e-24   84.0   0.8     3    76    55   128    54   129 0.97 Surface presentation of antigens (SPOA)
p450                 PF00067.17   463 sp|P15070|FLIN_ECOLI -            137     0.044   12.3   0.1   1   1   8.8e-06     0.065   11.7   0.1   324   365    71   114    50   118 0.90 Cytochrome P450
Bac_export_1         PF01311.15   249 sp|P33135|FLIR_ECOLI -            261   2.6e-76  256.1  28.7   1   1     2e-80   2.9e-76  256.0  28.7     1   248     7   251     7   252 0.99 Bacterial export proteins, family 1
FliS                 PF02561.9    122 sp|P26608|FLIS_ECOLI -            136   1.5e-45  153.9   1.3   1   1   3.4e-49   1.7e-45  153.8   1.3     2   121     4   128     2   129 0.97 Flagellar protein FliS
PRD                  PF00874.15    89 sp|P26608|FLIS_ECOLI -            136     0.021   14.9   0.0   1   1   9.3e-06     0.046   13.8   0.1     2    51    60   114    59   126 0.76 PRD domain
DUF3785              PF12653.2    138 sp|P26608|FLIS_ECOLI -            136      0.13   12.1   0.0   1   1   3.9e-05      0.19   11.5   0.0    19    59    42    82    35    92 0.87 Protein of unknown function (DUF3785)
FliT                 PF05400.8     84 sp|P0ABY2|FLIT_ECOLI -            121   3.1e-17   62.7   3.9   1   1   6.3e-21   4.7e-17   62.1   3.9     1    84    21   106    21   106 0.98 Flagellar protein FliT
DUF3654              PF12376.3    137 sp|P0ABY2|FLIT_ECOLI -            121     0.028   14.2   0.4   1   1   4.4e-06     0.033   14.0   0.4    28    96    22    88    10   102 0.80 Protein of unknown function (DUF3654)
DUF1018              PF06252.7    119 sp|P15286|FLK_ECOLI  -            331   0.00018   21.9   1.4   3   3   8.4e-05      0.41   11.1   0.1    69   114   236   281   211   285 0.83 Protein of unknown function (DUF1018)
Gluconate_2-dh3      PF13618.1    131 sp|P15286|FLK_ECOLI  -            331   0.00025   21.2   0.2   2   2   0.00017      0.83    9.8   0.1    51    89   246   285   220   314 0.86 Gluconate 2-dehydrogenase subunit 3
SBP_bac_3            PF00497.15   225 sp|P0AEM9|FLIY_ECOLI -            266   4.2e-72  242.0   0.7   1   1   1.3e-75   4.9e-72  241.8   0.7     2   224    44   261    43   262 0.97 Bacterial extracellular solute-binding proteins, family 3
Phosphonate-bd       PF12974.2    243 sp|P0AEM9|FLIY_ECOLI -            266   0.00026   20.4   0.8   1   1   4.8e-06     0.018   14.4   0.8    19   221    70   250    67   264 0.73 ABC transporter, phosphonate, periplasmic substrate-binding protein
OMP_b-brl            PF13505.1    176 sp|P0AEM9|FLIY_ECOLI -            266    0.0049   16.8   0.1   1   1   1.9e-06    0.0072   16.2   0.1     2   140    16   161    15   189 0.68 Outer membrane protein beta-barrel domain
NMT1                 PF09084.6    216 sp|P0AEM9|FLIY_ECOLI -            266    0.0076   15.8   0.4   2   2   7.9e-06     0.029   13.9   0.2    77   145   132   195   122   248 0.72 NMT1/THI5 like
Formyl_trans_N       PF00551.14   181 sp|P23882|FMT_ECOLI  -            315   4.5e-56  189.2   0.0   1   1   8.8e-60   6.5e-56  188.7   0.0     2   180     6   183     5   184 0.98 Formyl transferase
Formyl_trans_C       PF02911.13   100 sp|P23882|FMT_ECOLI  -            315   1.4e-33  114.9   0.1   1   1   2.9e-37   2.2e-33  114.3   0.1     1    99   207   304   207   305 0.98 Formyl transferase, C-terminal domain
Form_Nir_trans       PF01226.12   250 sp|P0AC23|FOCA_ECOLI -            285   1.9e-82  275.9  27.6   1   1   4.4e-86   2.2e-82  275.7  27.6     1   250    12   278    12   278 0.98 Formate/nitrite transporter
Keratin_assoc        PF09775.4    131 sp|P0AC23|FOCA_ECOLI -            285       7.8    6.0  12.7   2   2   4.7e-05      0.23   11.0   1.8     3    58    83   138    81   186 0.88 Keratinocyte-associated protein 2
Form_Nir_trans       PF01226.12   250 sp|P77733|FOCB_ECOLI -            282   1.1e-66  224.2  26.2   1   1   1.7e-70   1.2e-66  224.1  26.2     5   250    16   277    12   277 0.97 Formate/nitrite transporter
DUF1673              PF07895.6    205 sp|P77733|FOCB_ECOLI -            282       1.4    8.3   8.4   1   2   2.3e-05      0.17   11.3   0.2   105   170    13    78     9    84 0.84 Protein of unknown function (DUF1673)
FolB                 PF02152.13   113 sp|P0AC16|FOLB_ECOLI -            122     2e-32  111.7   0.2   1   1   1.5e-36   2.2e-32  111.5   0.2     1   113     4   114     4   114 0.99 Dihydroneopterin aldolase
Mur_ligase_M         PF08245.7    188 sp|P08192|FOLC_ECOLI -            422   4.3e-14   53.0   0.0   1   1   1.3e-17   9.7e-14   51.8   0.0     1   114    54   201    54   268 0.80 Mur ligase middle domain
Mur_ligase_C         PF02875.16    91 sp|P08192|FOLC_ECOLI -            422   3.3e-07   30.2   0.0   1   1   1.1e-10   7.8e-07   29.0   0.0     2    68   287   346   286   366 0.83 Mur ligase family, glutamate ligase domain
THF_DHG_CYH_C        PF02882.14   161 sp|P24186|FOLD_ECOLI -            288   1.7e-68  228.7   0.1   1   1     6e-72     3e-68  227.9   0.1     1   157   124   279   124   283 0.99 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
THF_DHG_CYH          PF00763.18   117 sp|P24186|FOLD_ECOLI -            288   1.3e-41  141.3   0.1   1   1   4.2e-45   2.1e-41  140.6   0.1     1   117     4   121     4   121 0.99 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
Amidohydro_1         PF01979.15   333 sp|P24186|FOLD_ECOLI -            288      0.04   13.5   0.0   2   2   1.9e-05     0.095   12.3   0.0    33   152   174   282   164   285 0.79 Amidohydrolase family
adh_short            PF00106.20   167 sp|P0AFS3|FOLM_ECOLI -            240   5.8e-16   58.8   0.2   1   1   2.1e-19   7.8e-16   58.4   0.2     3   166     9   170     8   171 0.87 short chain dehydrogenase
adh_short_C2         PF13561.1    241 sp|P0AFS3|FOLM_ECOLI -            240   1.6e-07   31.3   0.0   1   1   5.3e-11     2e-07   31.0   0.0     8   190    18   193    13   238 0.75 Enoyl-(Acyl carrier protein) reductase
KR                   PF08659.5    181 sp|P0AFS3|FOLM_ECOLI -            240   4.2e-07   29.8   0.5   1   1   2.1e-10   7.7e-07   28.9   0.5     4   172    10   175     8   184 0.84 KR domain
Epimerase            PF01370.16   236 sp|P0AFS3|FOLM_ECOLI -            240    0.0043   16.5   0.4   1   1   5.7e-05      0.21   10.9   0.4     1   156     9   168     9   182 0.61 NAD dependent epimerase/dehydratase family
FolB                 PF02152.13   113 sp|P0AC19|FOLX_ECOLI -            120   6.3e-26   90.7   1.5   1   1   4.7e-30     7e-26   90.6   1.5     1   111     8   116     8   118 0.98 Dihydroneopterin aldolase
Fapy_DNA_glyco       PF01149.19   116 sp|P05523|FPG_ECOLI  -            269   7.5e-31  106.8   0.0   1   1   4.1e-34   1.2e-30  106.2   0.0     1   115     2   114     2   115 0.96 Formamidopyrimidine-DNA glycosylase N-terminal domain
H2TH                 PF06831.9     93 sp|P05523|FPG_ECOLI  -            269   1.1e-29  101.9   0.0   1   1   6.2e-33   1.8e-29  101.2   0.0     1    89   129   217   129   220 0.97 Formamidopyrimidine-DNA glycosylase H2TH domain
zf-FPG_IleRS         PF06827.9     30 sp|P05523|FPG_ECOLI  -            269   7.7e-09   34.9   4.0   1   1     5e-12   1.5e-08   34.0   4.0     1    29   241   269   241   269 0.98 Zinc finger found in FPG and IleRS
FAD_binding_2        PF00890.19   417 sp|P00363|FRDA_ECOLI -            602  5.2e-116  387.9   1.0   1   2  3.8e-119  5.2e-116  387.9   1.0     1   417     7   397     7   397 0.98 FAD binding domain
Succ_DH_flav_C       PF02910.15   129 sp|P00363|FRDA_ECOLI -            602     9e-40  135.5   0.1   1   1   1.1e-42   1.5e-39  134.8   0.1     1   129   453   581   453   581 0.98 Fumarate reductase flavoprotein C-term
Pyr_redox_2          PF07992.9    201 sp|P00363|FRDA_ECOLI -            602   1.8e-09   37.7   0.0   1   3   9.4e-07    0.0013   18.6   0.1     1    31     7    39     7    97 0.77 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|P00363|FRDA_ECOLI -            602   1.8e-09   37.7   0.0   3   3   4.3e-05     0.058   13.2   0.0   174   198   359   383   283   386 0.92 Pyridine nucleotide-disulphide oxidoreductase
Thi4                 PF01946.12   230 sp|P00363|FRDA_ECOLI -            602   0.00064   18.8   0.3   1   2   1.6e-05     0.022   13.8   0.1    16    48     4    38     1    53 0.88 Thi4 family
HI0933_like          PF03486.9    409 sp|P00363|FRDA_ECOLI -            602    0.0041   15.6   1.3   1   3   3.2e-05     0.043   12.2   0.5     2    31     7    38     6    75 0.79 HI0933-like protein
DAO                  PF01266.19   358 sp|P00363|FRDA_ECOLI -            602    0.0058   15.5   1.3   1   2     6e-05     0.081   11.8   0.1     1    31     7    39     7    70 0.83 FAD dependent oxidoreductase
FAD_oxidored         PF12831.2    428 sp|P00363|FRDA_ECOLI -            602    0.0066   15.5   3.5   1   2   0.00034      0.46    9.4   2.1     1    29     7    37     7    41 0.83 FAD dependent oxidoreductase
Myb_DNA-binding      PF00249.26    48 sp|P00363|FRDA_ECOLI -            602      0.01   15.8   0.0   1   1   2.2e-05      0.03   14.3   0.0     9    32   434   457   434   464 0.90 Myb-like DNA-binding domain
Lycopene_cycl        PF05834.7    374 sp|P00363|FRDA_ECOLI -            602     0.013   14.4   0.9   1   1   1.3e-05     0.018   14.0   0.3     1    31     7    37     7    47 0.89 Lycopene cyclase protein
GIDA                 PF01134.17   392 sp|P00363|FRDA_ECOLI -            602     0.022   13.6   3.8   1   2   0.00011      0.15   10.8   2.5     1    28     7    36     7    59 0.79 Glucose inhibited division protein A
GFO_IDH_MocA         PF01408.17   120 sp|P00363|FRDA_ECOLI -            602     0.071   13.6   0.1   1   1   0.00013      0.17   12.4   0.1     3    53     8    58     6    86 0.85 Oxidoreductase family, NAD-binding Rossmann fold
Fer2_3               PF13085.1    110 sp|P0AC47|FRDB_ECOLI -            244   8.6e-31  106.0   0.0   1   1   1.8e-33   1.6e-30  105.1   0.0     1   110     8   112     8   112 0.96 2Fe-2S iron-sulfur cluster binding domain
Fer4_8               PF13183.1     57 sp|P0AC47|FRDB_ECOLI -            244   1.2e-12   47.5   4.8   2   2   2.1e-15   1.8e-12   47.0   2.1     2    57   146   219   145   219 0.72 4Fe-4S dicluster domain
Fer4_17              PF13534.1     61 sp|P0AC47|FRDB_ECOLI -            244   5.1e-10   39.5  13.1   1   2   9.2e-07    0.0008   19.7   1.1    35    58   138   161   118   165 0.76 4Fe-4S dicluster domain
Fer4_17              PF13534.1     61 sp|P0AC47|FRDB_ECOLI -            244   5.1e-10   39.5  13.1   2   2   1.3e-10   1.1e-07   32.0   4.9     2    61   149   220   148   220 0.72 4Fe-4S dicluster domain
Fer4_10              PF13237.1     52 sp|P0AC47|FRDB_ECOLI -            244   8.4e-10   38.2   1.9   2   2   9.7e-13   8.4e-10   38.2   1.9     7    52   147   216   141   216 0.94 4Fe-4S dicluster domain
Fer4_18              PF13746.1     69 sp|P0AC47|FRDB_ECOLI -            244   1.6e-08   34.7   6.6   1   2   2.6e-05     0.023   15.1   2.8    39    64   136   161    57   163 0.76 4Fe-4S dicluster domain
Fer4_18              PF13746.1     69 sp|P0AC47|FRDB_ECOLI -            244   1.6e-08   34.7   6.6   2   2     3e-07   0.00027   21.3   0.1    15    67   168   220   164   222 0.93 4Fe-4S dicluster domain
Fer4_7               PF12838.2     52 sp|P0AC47|FRDB_ECOLI -            244   2.4e-06   27.8   2.7   1   1   2.8e-09   2.4e-06   27.8   2.7     2    51   149   218   148   219 0.55 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|P0AC47|FRDB_ECOLI -            244   3.3e-06   27.2   6.8   1   2     5e-05     0.043   14.0   1.4    39    52   148   161   117   164 0.73 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|P0AC47|FRDB_ECOLI -            244   3.3e-06   27.2   6.8   2   2   1.4e-08   1.2e-05   25.4   4.1     2    53   149   218   148   219 0.75 4Fe-4S dicluster domain
Fer4_16              PF13484.1     67 sp|P0AC47|FRDB_ECOLI -            244   3.7e-05   24.3   2.4   1   1   4.3e-08   3.7e-05   24.3   2.4     2    65   149   216   148   218 0.82 4Fe-4S double cluster binding domain
Fer4                 PF00037.22    24 sp|P0AC47|FRDB_ECOLI -            244   0.00031   20.2   1.3   1   2   3.5e-07   0.00031   20.2   1.3     8    19   149   160   143   162 0.89 4Fe-4S binding domain
Fer4_2               PF12797.2     22 sp|P0AC47|FRDB_ECOLI -            244   0.00051   19.8   1.2   1   2   5.8e-07   0.00051   19.8   1.2     5    22   144   161   141   161 0.87 4Fe-4S binding domain
Fer4_4               PF12800.2     17 sp|P0AC47|FRDB_ECOLI -            244     0.003   17.7   2.5   1   2   3.5e-06     0.003   17.7   2.5     4    16   149   161   144   162 0.94 4Fe-4S binding domain
Fer2                 PF00111.22    78 sp|P0AC47|FRDB_ECOLI -            244    0.0032   17.1   1.0   1   1   1.1e-05    0.0094   15.6   0.0    15    75    33    80    25    86 0.75 2Fe-2S iron-sulfur cluster binding domain
Fer4_13              PF13370.1     58 sp|P0AC47|FRDB_ECOLI -            244    0.0073   16.6   0.4   1   2   8.4e-06    0.0073   16.6   0.4     5    18   148   161   147   187 0.91 4Fe-4S single cluster domain
Fer4_6               PF12837.2     24 sp|P0AC47|FRDB_ECOLI -            244     0.013   15.3   2.4   1   2   1.5e-05     0.013   15.3   2.4     9    20   149   160   149   165 0.92 4Fe-4S binding domain
Fer4_15              PF13459.1     65 sp|P0AC47|FRDB_ECOLI -            244     0.027   15.0   5.0   1   2   0.00066      0.58   10.7   0.1     7    23   148   163   146   195 0.79 4Fe-4S single cluster domain
Fer4_21              PF14697.1     59 sp|P0AC47|FRDB_ECOLI -            244      0.24   11.3  11.8   1   1   0.00064      0.56   10.1   7.9     7    52   148   216   141   221 0.57 4Fe-4S dicluster domain
Fer4_3               PF12798.2     15 sp|P0AC47|FRDB_ECOLI -            244       2.7    8.7  22.4   1   2   0.00033      0.29   11.8   3.9     1    13   149   161   149   163 0.93 4Fe-4S binding domain
Fumarate_red_C       PF02300.12   129 sp|P0A8Q0|FRDC_ECOLI -            131   7.1e-59  197.2   3.5   1   1   1.1e-62   8.1e-59  197.1   3.5     1   128     2   129     2   130 0.99 Fumarate reductase subunit C
Sdh_cyt              PF01127.17   121 sp|P0A8Q0|FRDC_ECOLI -            131     0.038   13.8   2.5   1   2     7e-06     0.052   13.3   0.3    33    83    36    84     2    86 0.64 Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Fumarate_red_D       PF02313.12   118 sp|P0A8Q3|FRDD_ECOLI -            119   6.4e-53  177.6   5.6   1   1   1.9e-56   7.2e-53  177.4   5.6     2   117     3   117     2   118 0.98 Fumarate reductase subunit D
Sdh_cyt              PF01127.17   121 sp|P0A8Q3|FRDD_ECOLI -            119      0.24   11.2   9.5   1   1   8.9e-05      0.33   10.7   9.5    30   120    26   111    22   118 0.64 Succinate dehydrogenase/Fumarate reductase transmembrane subunit
SdpI                 PF13630.1     76 sp|P0A8Q3|FRDD_ECOLI -            119       2.4    7.9  12.0   2   2   5.5e-05       0.2   11.3   2.1    17    73    50   117    48   119 0.74 SdpI/YhfL protein family
NAD_binding_1        PF00175.16   109 sp|P0AEN1|FRE_ECOLI  -            233   9.8e-21   74.3   0.0   1   1   3.2e-24   1.6e-20   73.6   0.0     1   108   108   211   108   212 0.97 Oxidoreductase NAD-binding domain
FAD_binding_6        PF00970.19    99 sp|P0AEN1|FRE_ECOLI  -            233   8.6e-09   35.4   0.0   1   1   2.7e-12   1.3e-08   34.8   0.0     1    76     5    74     5    97 0.77 Oxidoreductase FAD-binding domain
NAD_binding_6        PF08030.7    156 sp|P0AEN1|FRE_ECOLI  -            233     0.083   12.7   0.0   1   1   2.7e-05      0.13   12.1   0.0     5    49   107   146   104   163 0.83 Ferric reductase NAD binding domain
AA_permease_2        PF13520.1    426 sp|P45539|FRLA_ECOLI -            445   2.1e-59  201.1  45.4   1   1   5.3e-63   2.6e-59  200.8  45.4     1   405    10   410    10   431 0.85 Amino acid permease
AA_permease          PF00324.16   478 sp|P45539|FRLA_ECOLI -            445   3.7e-36  124.4  41.7   1   1   1.8e-39   9.1e-36  123.2  41.5     2   474    15   440    14   444 0.84 Amino acid permease
Melittin             PF01372.12    26 sp|P45539|FRLA_ECOLI -            445    0.0035   16.6   0.0   1   1     2e-06      0.01   15.1   0.0     8    25   423   440   418   441 0.91 Melittin
PfkB                 PF00294.19   301 sp|P45543|FRLD_ECOLI -            261     8e-38  130.2   0.1   1   1   1.5e-41   1.1e-37  129.8   0.1    34   294    22   260     7   261 0.87 pfkB family carbohydrate kinase
Phos_pyr_kin         PF08543.7    246 sp|P45543|FRLD_ECOLI -            261      0.04   13.1   0.0   1   1   8.7e-06     0.064   12.4   0.0   139   233   169   256   159   260 0.86 Phosphomethylpyrimidine kinase
ADH_N                PF08240.7    109 sp|P25437|FRMA_ECOLI -            369   1.5e-28   98.7   2.5   1   2   5.1e-32   1.5e-28   98.7   2.5     2   108    28   154    27   155 0.92 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N           PF00107.21   130 sp|P25437|FRMA_ECOLI -            369   4.2e-19   68.3   0.1   1   1   2.5e-22   7.3e-19   67.5   0.1     1   128   197   330   197   332 0.87 Zinc-binding dehydrogenase
TrkA_N               PF02254.13   116 sp|P25437|FRMA_ECOLI -            369    0.0019   18.1   0.0   1   1   1.1e-06    0.0033   17.4   0.0     1    45   190   236   190   253 0.84 TrkA-N domain
ADH_zinc_N_2         PF13602.1    127 sp|P25437|FRMA_ECOLI -            369    0.0041   18.0   0.0   1   1   3.5e-06      0.01   16.7   0.0     2   121   231   362   230   363 0.63 Zinc-binding dehydrogenase
2-Hacid_dh_C         PF02826.14   178 sp|P25437|FRMA_ECOLI -            369     0.025   13.7   0.1   1   1   1.7e-05     0.049   12.7   0.1    36    73   187   225   176   238 0.84 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Trns_repr_metal      PF02583.12    85 sp|P0AAP3|FRMR_ECOLI -             91   3.9e-26   91.0   0.8   1   1   5.9e-30   4.3e-26   90.9   0.8     2    85     6    89     5    89 0.94 Metal-sensitive transcriptional repressor
Img2                 PF05046.9     87 sp|P0AAP3|FRMR_ECOLI -             91    0.0048   17.1   0.1   1   1   1.2e-06    0.0089   16.2   0.1    24    46     8    30     3    80 0.89 Mitochondrial large subunit ribosomal protein (Img2)
DUF1100              PF06500.6    411 sp|P04335|FRSA_ECOLI -            414  1.2e-222  738.7   0.0   1   1  3.7e-226  1.4e-222  738.5   0.0     1   411     1   414     1   414 0.99 Alpha/beta hydrolase of unknown function (DUF1100)
Abhydrolase_5        PF12695.2    145 sp|P04335|FRSA_ECOLI -            414   3.7e-08   33.2   0.0   1   1   1.8e-11   6.7e-08   32.3   0.0     1   125   196   376   196   392 0.74 Alpha/beta hydrolase family
Abhydrolase_6        PF12697.2    228 sp|P04335|FRSA_ECOLI -            414   3.9e-06   26.8   0.4   2   2   2.3e-09   8.4e-06   25.8   0.1    12   109   208   328   197   390 0.69 Alpha/beta hydrolase family
AXE1                 PF05448.7    320 sp|P04335|FRSA_ECOLI -            414   0.00029   19.4   0.1   2   2   4.6e-06     0.017   13.6   0.0   162   218   252   313   247   334 0.84 Acetyl xylan esterase (AXE1)
Peptidase_M42        PF05343.9    292 sp|P32153|FRVX_ECOLI -            356  1.1e-102  342.8   0.0   1   1  2.5e-106  1.2e-102  342.5   0.0     1   292    43   333    43   333 0.98 M42 glutamyl aminopeptidase
Peptidase_M28        PF04389.12   179 sp|P32153|FRVX_ECOLI -            356     0.005   16.5   0.0   1   1   2.1e-06     0.011   15.5   0.0    24    88   173   228   163   294 0.82 Peptidase family M28
LSM                  PF01423.17    67 sp|P32153|FRVX_ECOLI -            356      0.12   11.9   0.0   1   1   5.3e-05      0.26   10.8   0.0     4    28    89   113    88   124 0.88 LSM domain
Transaldolase        PF00923.14   287 sp|P32669|FSAB_ECOLI -            220   6.8e-48  163.2   0.1   1   1   9.7e-52   1.4e-47  162.1   0.1     1   244     3   206     3   218 0.94 Transaldolase
Transaldolase        PF00923.14   287 sp|P78055|FSAA_ECOLI -            220   2.9e-44  151.3   0.1   1   1   4.9e-48   7.2e-44  150.0   0.1     1   243     3   205     3   217 0.95 Transaldolase
MFS_1                PF07690.11   352 sp|P52067|FSR_ECOLI  -            406   4.1e-38  131.0  57.4   1   2   1.9e-28   7.2e-25   87.4  23.6     2   246    31   265    30   267 0.80 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P52067|FSR_ECOLI  -            406   4.1e-38  131.0  57.4   2   2   2.6e-19   9.7e-16   57.4  25.8     1   177   232   404   231   406 0.90 Major Facilitator Superfamily
OATP                 PF03137.15   539 sp|P52067|FSR_ECOLI  -            406     0.012   13.7   9.4   1   2   5.8e-05      0.21    9.5   1.0    10    87    32   109    25   121 0.82 Organic Anion Transporter Polypeptide (OATP) family
OATP                 PF03137.15   539 sp|P52067|FSR_ECOLI  -            406     0.012   13.7   9.4   2   2   0.00014      0.53    8.2   1.9   302   368   227   289   202   341 0.78 Organic Anion Transporter Polypeptide (OATP) family
RAP-1                PF03085.10   251 sp|P52067|FSR_ECOLI  -            406      0.15   11.4   0.1   1   1   5.4e-05       0.2   10.9   0.1   129   187   216   276   196   294 0.71 Rhoptry-associated protein 1 (RAP-1)
Tad                  PF13400.1     48 sp|P52067|FSR_ECOLI  -            406      0.15   12.0   0.2   2   4   4.1e-05      0.15   12.0   0.2     3    34   180   207   178   209 0.79 Putative Flp pilus-assembly TadE/G-like
Ferritin             PF00210.19   142 sp|P0A9A2|FTNB_ECOLI -            167   1.4e-22   79.9   1.4   1   1   4.4e-26   1.6e-22   79.7   1.4     3   140     9   142     7   144 0.93 Ferritin-like domain
AAA_22               PF13401.1    131 sp|P0A9A2|FTNB_ECOLI -            167    0.0089   16.1   0.3   1   1   3.4e-06     0.013   15.6   0.3    56   114    67   127    23   141 0.87 AAA domain
DUF3783              PF12646.2     58 sp|P0A9A2|FTNB_ECOLI -            167      0.03   14.0   0.1   1   1   2.8e-05       0.1   12.3   0.0    12    56    52    96    47    98 0.94 Domain of unknown function (DUF3783)
DASH_Dad3            PF08656.5     78 sp|P0A9A2|FTNB_ECOLI -            167     0.061   13.0   1.9   1   1   3.7e-05      0.14   11.8   1.9     1    48    83   125    83   143 0.82 DASH complex subunit Dad3
Ferritin             PF00210.19   142 sp|P0A998|FTNA_ECOLI -            165   9.1e-34  116.2   5.6   1   1   2.1e-37     1e-33  116.0   5.6     1   140     7   142     7   144 0.94 Ferritin-like domain
Ferritin-like        PF12902.2    227 sp|P0A998|FTNA_ECOLI -            165    0.0061   16.1   2.2   1   2   5.8e-06     0.029   13.9   0.2     1    65    10    74    10    82 0.76 Ferritin-like
FtsA                 PF14450.1    120 sp|P0ABH0|FTSA_ECOLI -            420   1.7e-50  169.8   3.7   1   2     1e-22   1.6e-19   69.9   1.1     1   119    10   195    10   196 0.97 Cell division protein FtsA
FtsA                 PF14450.1    120 sp|P0ABH0|FTSA_ECOLI -            420   1.7e-50  169.8   3.7   2   2   3.3e-32   4.8e-29  100.6   0.1     1   120   206   382   206   382 0.99 Cell division protein FtsA
SHS2_FTSA            PF02491.15    80 sp|P0ABH0|FTSA_ECOLI -            420   2.2e-32  110.7   1.5   1   1   2.8e-35   4.1e-32  109.8   1.5     1    80    84   163    84   163 0.99 SHS2 domain inserted in FTSA
PilM_2               PF11104.3    340 sp|P0ABH0|FTSA_ECOLI -            420   1.8e-12   46.7   0.0   1   1   4.5e-15   6.7e-12   44.9   0.0   101   313   130   367    12   382 0.75 Type IV pilus assembly protein PilM;
MreB_Mbl             PF06723.8    327 sp|P0ABH0|FTSA_ECOLI -            420   5.1e-10   38.4   0.2   3   3   3.4e-13   5.1e-10   38.4   0.2   144   304   203   359   162   370 0.77 MreB/Mbl protein
EutA                 PF06277.6    473 sp|P0ABH0|FTSA_ECOLI -            420    0.0011   17.6   1.3   1   1     1e-06    0.0015   17.2   0.4   128   181   188   242   174   341 0.84 Ethanolamine utilisation protein EutA
Hydantoinase_A       PF01968.13   290 sp|P0ABH0|FTSA_ECOLI -            420    0.0013   17.9   1.3   1   2   2.3e-06    0.0034   16.5   0.4    56   105   184   232   171   243 0.83 Hydantoinase/oxoprolinase
DDR                  PF08841.5    332 sp|P0ABH0|FTSA_ECOLI -            420     0.024   13.4   0.9   2   2   6.2e-05     0.092   11.5   0.8   127   189   197   258   102   265 0.80 Diol dehydratase reactivase ATPase-like domain
SrfB                 PF07520.6   1002 sp|P0ABH0|FTSA_ECOLI -            420     0.083   10.3   0.1   1   2   0.00017      0.25    8.7   0.1   560   583   198   221   182   234 0.84 Virulence factor SrfB
DivIC                PF04977.10    80 sp|P0A6S5|FTSB_ECOLI -            103   5.3e-30  102.7   0.0   1   1   1.3e-33   6.3e-30  102.4   0.0     1    79    11    89    11    90 0.98 Septum formation initiator
FtsL                 PF04999.8     97 sp|P0A6S5|FTSB_ECOLI -            103      0.08   12.6   0.1   1   1   2.3e-05      0.12   12.1   0.1    42    89    34    82     1    89 0.66 Cell division protein FtsL
PA14_2               PF10528.4    113 sp|P0A6S5|FTSB_ECOLI -            103     0.092   12.7   0.1   1   1   2.7e-05      0.13   12.1   0.1    31    57    19    45    16    56 0.81 GLEYA domain
ABC_tran             PF00005.22   137 sp|P0A9R7|FTSE_ECOLI -            222   1.1e-37  129.4   0.0   1   1   1.5e-40   1.4e-37  129.0   0.0     1   136    18   165    18   166 0.96 ABC transporter
AAA_21               PF13304.1    303 sp|P0A9R7|FTSE_ECOLI -            222   3.9e-11   43.4   0.0   1   2   4.9e-05     0.045   13.6   0.1     1    24    30    53    30    98 0.73 AAA domain
AAA_21               PF13304.1    303 sp|P0A9R7|FTSE_ECOLI -            222   3.9e-11   43.4   0.0   2   2   1.1e-09     1e-06   28.9   0.0   178   302    98   200    54   201 0.76 AAA domain
AAA_29               PF13555.1     62 sp|P0A9R7|FTSE_ECOLI -            222   2.4e-05   23.7   0.1   1   1   6.1e-08   5.7e-05   22.5   0.1    13    40    19    45    16    51 0.86 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|P0A9R7|FTSE_ECOLI -            222   0.00046   19.4   0.0   1   1     8e-07   0.00075   18.7   0.0    24    64    16    57     5    75 0.81 Protein of unknown function, DUF258
AAA_16               PF13191.1    185 sp|P0A9R7|FTSE_ECOLI -            222    0.0012   18.8   0.1   1   1   1.5e-06    0.0014   18.6   0.1    19    58    23    63    15   191 0.80 AAA ATPase domain
AAA_25               PF13481.1    194 sp|P0A9R7|FTSE_ECOLI -            222    0.0014   18.0   0.2   1   1     1e-05    0.0096   15.3   0.2    29    55    24    50    14   191 0.75 AAA domain
AAA_15               PF13175.1    415 sp|P0A9R7|FTSE_ECOLI -            222    0.0022   17.1   0.0   1   2   0.00035      0.32    9.9   0.0    23    43    29    59     3    87 0.77 AAA ATPase domain
AAA_23               PF13476.1    202 sp|P0A9R7|FTSE_ECOLI -            222     0.017   15.4   0.0   1   1   2.9e-05     0.027   14.7   0.0    21    40    30    49    15    51 0.80 AAA domain
AAA_10               PF12846.2    304 sp|P0A9R7|FTSE_ECOLI -            222     0.022   14.1   0.1   1   1   6.9e-05     0.064   12.6   0.1     4    22    31    49    28    60 0.90 AAA-like domain
AAA_17               PF13207.1    121 sp|P0A9R7|FTSE_ECOLI -            222     0.022   15.5   0.0   1   1     4e-05     0.037   14.8   0.0     4    20    33    49    31   102 0.92 AAA domain
AAA_22               PF13401.1    131 sp|P0A9R7|FTSE_ECOLI -            222     0.037   14.1   0.2   1   1   0.00019      0.18   11.9   0.1     4    23    28    47    25    55 0.88 AAA domain
MMR_HSR1             PF01926.18   116 sp|P0A9R7|FTSE_ECOLI -            222     0.043   13.7   0.0   1   1   6.7e-05     0.062   13.2   0.0     3    45    32    86    30   200 0.71 50S ribosome-binding GTPase
AAA_33               PF13671.1    143 sp|P0A9R7|FTSE_ECOLI -            222      0.06   13.2   0.1   1   2   0.00045      0.41   10.5   0.0     3    19    32    48    30    74 0.89 AAA domain
NTPase_1             PF03266.10   168 sp|P0A9R7|FTSE_ECOLI -            222      0.13   11.9   0.0   1   1   0.00026      0.25   11.0   0.0     3    20    32    49    30    58 0.90 NTPase
AAA_30               PF13604.1    196 sp|P0A9R7|FTSE_ECOLI -            222      0.13   11.7   0.0   1   1   0.00024      0.22   11.0   0.0    12    38    22    48    12    61 0.81 AAA domain
Miro                 PF08477.8    119 sp|P0A9R7|FTSE_ECOLI -            222      0.17   12.3   0.0   1   1   0.00029      0.27   11.7   0.0     3    28    32    56    31   109 0.77 Miro-like protein
Peptidase_M41        PF01434.13   213 sp|P0AAI3|FTSH_ECOLI -            644   8.6e-84  280.2   0.7   1   1   2.4e-86   1.4e-83  279.6   0.7     2   212   382   591   381   592 0.98 Peptidase family M41
AAA                  PF00004.24   132 sp|P0AAI3|FTSH_ECOLI -            644   1.8e-46  157.6   0.0   1   1   8.9e-49   5.1e-46  156.1   0.0     1   131   188   320   188   321 0.97 ATPase family associated with various cellular activities (AAA)
FtsH_ext             PF06480.10   110 sp|P0AAI3|FTSH_ECOLI -            644   1.2e-16   60.8   0.2   1   1   2.2e-19   1.2e-16   60.8   0.2     1   110     5    93     5    93 0.95 FtsH Extracellular
AAA_5                PF07728.9    139 sp|P0AAI3|FTSH_ECOLI -            644   8.5e-07   28.7   0.0   1   1   7.6e-09   4.3e-06   26.4   0.0     1   137   187   309   187   310 0.82 AAA domain (dynein-related subfamily)
TIP49                PF06068.8    398 sp|P0AAI3|FTSH_ECOLI -            644   1.2e-05   24.1   0.0   1   1   4.1e-08   2.4e-05   23.2   0.0    30    88   158   221   137   229 0.75 TIP49 C-terminus
Zeta_toxin           PF06414.7    201 sp|P0AAI3|FTSH_ECOLI -            644   0.00012   21.2   0.1   2   2   1.5e-06   0.00086   18.4   0.1    15    55   184   223   173   244 0.85 Zeta toxin
RuvB_N               PF05496.7    234 sp|P0AAI3|FTSH_ECOLI -            644   0.00038   19.5   0.0   1   1   1.8e-06     0.001   18.1   0.0    52    85   187   220   143   260 0.72 Holliday junction DNA helicase ruvB N-terminus
AAA_17               PF13207.1    121 sp|P0AAI3|FTSH_ECOLI -            644   0.00049   20.9   0.1   1   1     4e-06    0.0023   18.7   0.0     2    44   188   241   188   336 0.61 AAA domain
IstB_IS21            PF01695.12   178 sp|P0AAI3|FTSH_ECOLI -            644   0.00071   19.0   0.1   1   1   3.6e-06    0.0021   17.5   0.0    49    71   187   209   183   253 0.88 IstB-like ATP binding protein
AAA_33               PF13671.1    143 sp|P0AAI3|FTSH_ECOLI -            644   0.00097   19.0   0.1   1   1     5e-06    0.0029   17.5   0.0     2    30   188   218   188   257 0.82 AAA domain
AAA_19               PF13245.1     76 sp|P0AAI3|FTSH_ECOLI -            644    0.0019   17.9   0.5   1   1     1e-05    0.0057   16.3   0.5    11    32   187   206   178   213 0.80 Part of AAA domain
AAA_2                PF07724.9    171 sp|P0AAI3|FTSH_ECOLI -            644    0.0022   17.9   0.1   1   1   2.4e-05     0.014   15.3   0.0     6    83   188   259   185   284 0.73 AAA domain (Cdc48 subfamily)
AAA_22               PF13401.1    131 sp|P0AAI3|FTSH_ECOLI -            644    0.0023   18.0   0.6   1   1   9.2e-05     0.052   13.6   0.1     7    49   188   220   185   298 0.72 AAA domain
AAA_16               PF13191.1    185 sp|P0AAI3|FTSH_ECOLI -            644    0.0024   17.8   0.1   1   2   4.5e-05     0.026   14.5   0.0    20    48   181   209   161   224 0.75 AAA ATPase domain
Mg_chelatase         PF01078.16   207 sp|P0AAI3|FTSH_ECOLI -            644    0.0027   16.8   0.2   1   1   1.3e-05    0.0077   15.4   0.2    25    43   188   206   183   210 0.91 Magnesium chelatase, subunit ChlI
CSTF2_hinge          PF14327.1     84 sp|P0AAI3|FTSH_ECOLI -            644    0.0058   16.6   0.1   1   1   2.4e-05     0.014   15.4   0.1    37    82   548   593   543   595 0.93 Hinge domain of cleavage stimulation factor subunit 2
AAA_14               PF13173.1    128 sp|P0AAI3|FTSH_ECOLI -            644    0.0075   16.1   0.0   1   1   3.5e-05      0.02   14.7   0.0     5    73   188   256   185   299 0.72 AAA domain
ABC_tran             PF00005.22   137 sp|P0AAI3|FTSH_ECOLI -            644     0.017   15.3   0.9   1   1   0.00033      0.19   12.0   0.1    14    36   188   210   180   221 0.90 ABC transporter
AAA_25               PF13481.1    194 sp|P0AAI3|FTSH_ECOLI -            644     0.019   14.3   4.6   1   2   7.7e-05     0.044   13.1   0.2    25    57   180   209   159   228 0.74 AAA domain
DUF4245              PF14030.1    169 sp|P0AAI3|FTSH_ECOLI -            644     0.022   14.4   0.5   1   1   0.00016     0.093   12.4   0.0     9    52     1    43     1    51 0.82 Protein of unknown function (DUF4245)
Sigma54_activat      PF00158.21   168 sp|P0AAI3|FTSH_ECOLI -            644     0.049   13.1   0.0   1   1   0.00063      0.36   10.2   0.0    22    45   185   208   170   227 0.81 Sigma-54 interaction domain
AAA_28               PF13521.1    163 sp|P0AAI3|FTSH_ECOLI -            644     0.071   13.0   0.0   1   1   0.00028      0.16   11.9   0.0     2    35   188   222   187   244 0.76 AAA domain
PhoH                 PF02562.11   205 sp|P0AAI3|FTSH_ECOLI -            644     0.077   12.2   0.4   1   1    0.0003      0.17   11.0   0.4    22    41   188   207   182   211 0.88 PhoH-like protein
AAA_PrkA             PF08298.6    358 sp|P0AAI3|FTSH_ECOLI -            644      0.08   11.6   0.0   1   1   0.00023      0.13   10.8   0.0    58   143   150   239   135   244 0.75 PrkA AAA domain
NACHT                PF05729.7    166 sp|P0AAI3|FTSH_ECOLI -            644     0.089   12.4   0.3   1   1   0.00064      0.37   10.4   0.1     3    25   188   210   186   213 0.89 NACHT domain
Transpeptidase       PF00905.17   304 sp|P0AD68|FTSI_ECOLI -            588   4.5e-82  275.4   0.0   1   1   8.2e-86   6.1e-82  275.0   0.0     1   303   260   554   260   555 0.99 Penicillin binding protein transpeptidase domain
PBP_dimer            PF03717.10   179 sp|P0AD68|FTSI_ECOLI -            588   1.7e-35  122.7   0.0   1   1   3.7e-39   2.7e-35  122.0   0.0     3   177    68   220    66   222 0.94 Penicillin-binding Protein dimerisation domain
FtsK_SpoIIIE         PF01580.13   205 sp|P46889|FTSK_ECOLI -           1329   4.2e-74  248.4   0.1   1   1   4.4e-77   6.6e-74  247.8   0.1     2   205   948  1161   947  1161 0.98 FtsK/SpoIIIE family
DUF4117              PF13491.1    171 sp|P46889|FTSK_ECOLI -           1329   3.7e-41  140.4  17.3   1   1   3.5e-44   5.2e-41  139.9  17.3     2   171    20   191    19   191 0.95 Domain of unknown function (DUF4117)
Ftsk_gamma           PF09397.5     67 sp|P46889|FTSK_ECOLI -           1329   2.3e-30  104.1   0.0   1   1   3.4e-33     5e-30  103.0   0.0     2    65  1262  1325  1261  1327 0.96 Ftsk gamma domain
AAA_10               PF12846.2    304 sp|P46889|FTSK_ECOLI -           1329   8.2e-10   38.6   0.1   1   2   1.7e-06    0.0025   17.3   0.0     2    38   985  1025   984  1031 0.85 AAA-like domain
AAA_10               PF12846.2    304 sp|P46889|FTSK_ECOLI -           1329   8.2e-10   38.6   0.1   2   2   6.7e-07     0.001   18.6   0.0   218   294  1112  1187  1080  1196 0.81 AAA-like domain
DUF87                PF01935.12   229 sp|P46889|FTSK_ECOLI -           1329   0.00048   20.0   0.0   1   1   7.5e-07    0.0011   18.8   0.0    13    60   976  1024   966  1025 0.80 Domain of unknown function DUF87
TrwB_AAD_bind        PF10412.4    386 sp|P46889|FTSK_ECOLI -           1329    0.0057   15.3   0.0   1   2   2.1e-05      0.03   12.9   0.0    13    52   982  1025   971  1032 0.72 Type IV secretion-system coupling protein DNA-binding domain
T2SE                 PF00437.15   272 sp|P46889|FTSK_ECOLI -           1329    0.0098   14.8   0.0   1   1   1.3e-05      0.02   13.8   0.0   130   162   986  1022   968  1053 0.78 Type II/IV secretion system protein
AAA_29               PF13555.1     62 sp|P46889|FTSK_ECOLI -           1329     0.099   12.1   0.0   1   1   0.00015      0.22   11.0   0.0    24    45   985  1006   975  1019 0.80 P-loop containing region of AAA domain
AAA_22               PF13401.1    131 sp|P46889|FTSK_ECOLI -           1329      0.13   12.3   0.0   1   1   0.00049      0.73    9.9   0.0     6   124   986  1157   982  1163 0.70 AAA domain
FtsL                 PF04999.8     97 sp|P0AEN4|FTSL_ECOLI -            121   1.4e-33  114.4   0.1   1   1   2.2e-37   1.7e-33  114.2   0.1     3    96    26   119    24   120 0.97 Cell division protein FtsL
DivIC                PF04977.10    80 sp|P0AEN4|FTSL_ECOLI -            121     0.014   14.9   0.1   1   1   2.3e-06     0.017   14.5   0.1     1    67    42   107    42   118 0.96 Septum formation initiator
Cu-oxidase_3         PF07732.10   118 sp|P26648|FTSP_ECOLI -            470   1.6e-25   89.0   0.4   1   2   1.2e-28   6.1e-25   87.2   0.1     2   116    52   166    51   168 0.96 Multicopper oxidase
Cu-oxidase_2         PF07731.9    138 sp|P26648|FTSP_ECOLI -            470   4.6e-10   39.1   0.0   1   1   1.9e-13   9.4e-10   38.1   0.0    17   136   367   468   339   470 0.83 Multicopper oxidase
Cu-oxidase           PF00394.17   159 sp|P26648|FTSP_ECOLI -            470   0.00012   22.0   0.0   1   1   6.4e-08   0.00032   20.6   0.0    63   126   223   287   187   302 0.82 Multicopper oxidase
FtsQ                 PF03799.10   117 sp|P06136|FTSQ_ECOLI -            276   6.6e-34  116.6   0.2   1   1   2.1e-37     1e-33  115.9   0.2     1   117   129   247   129   247 0.93 Cell division protein FtsQ
POTRA_1              PF08478.5     69 sp|P06136|FTSQ_ECOLI -            276   6.9e-20   70.8   0.1   1   1   3.5e-23   1.7e-19   69.5   0.1     2    69    56   126    55   126 0.97 POTRA domain, FtsQ-type
Prok-E2_B            PF14461.1    133 sp|P06136|FTSQ_ECOLI -            276       0.1   12.3   0.0   1   1   3.4e-05      0.17   11.6   0.0     5    55   174   224   171   233 0.87 Prokaryotic E2 family B
FTSW_RODA_SPOVE      PF01098.14   359 sp|P0ABG4|FTSW_ECOLI -            414  2.6e-130  434.3  23.9   1   1  6.7e-134  3.3e-130  434.0  23.9     2   358    47   402    46   403 0.98 Cell cycle protein
O-antigen_lig        PF13425.1    140 sp|P0ABG4|FTSW_ECOLI -            414    0.0085   16.0   9.4   2   2   1.7e-06    0.0085   16.0   9.4     7   139   183   318   177   322 0.62 O-antigen ligase like membrane protein
Syndecan             PF01034.15    64 sp|P0ABG4|FTSW_ECOLI -            414      0.56    9.8   5.9   2   2   8.8e-05      0.43   10.2   0.9     8    35   296   325   292   329 0.82 Syndecan domain
FtsX                 PF02687.16   121 sp|P0AC30|FTSX_ECOLI -            352   3.6e-12   46.1  12.8   2   2   8.1e-16     6e-12   45.3   9.6     2   116   227   341   225   348 0.81 FtsX-like permease family
MacB_PCD             PF12704.2    232 sp|P0AC30|FTSX_ECOLI -            352    0.0061   16.1   1.0   1   2   1.4e-06      0.01   15.4   0.0     1    77    63   149    63   209 0.75 MacB-like periplasmic core domain
SRP54                PF00448.17   196 sp|P10121|FTSY_ECOLI -            497   3.9e-80  267.9   2.2   1   1     6e-83   3.9e-80  267.9   2.2     1   195   293   493   293   494 0.99 SRP54-type protein, GTPase domain
SRP54_N              PF02881.14    75 sp|P10121|FTSY_ECOLI -            497   1.1e-16   60.6   2.6   1   1   1.7e-19   1.1e-16   60.6   2.6     1    75   199   275   199   275 0.95 SRP54-type protein, helical bundle domain
Zeta_toxin           PF06414.7    201 sp|P10121|FTSY_ECOLI -            497   3.2e-07   29.6   0.1   1   1   1.2e-09   7.5e-07   28.4   0.1    10   133   287   414   279   417 0.81 Zeta toxin
AAA_22               PF13401.1    131 sp|P10121|FTSY_ECOLI -            497   4.6e-06   26.8   0.0   1   1   2.7e-08   1.7e-05   24.9   0.0     7   113   296   402   292   420 0.70 AAA domain
AAA_33               PF13671.1    143 sp|P10121|FTSY_ECOLI -            497   0.00028   20.8   0.1   1   1   9.8e-07   0.00063   19.6   0.1     1    98   295   410   295   428 0.65 AAA domain
APS_kinase           PF01583.15   157 sp|P10121|FTSY_ECOLI -            497   0.00055   19.6   0.0   1   1     2e-06    0.0013   18.4   0.0     2    49   293   340   292   361 0.90 Adenylylsulphate kinase
AAA_30               PF13604.1    196 sp|P10121|FTSY_ECOLI -            497   0.00084   18.9   1.5   1   1   1.3e-06   0.00084   18.9   1.5    20   108   295   390   288   406 0.63 AAA domain
AAA_16               PF13191.1    185 sp|P10121|FTSY_ECOLI -            497   0.00085   19.3   0.0   1   1   1.3e-06   0.00085   19.3   0.0    18   119   287   400   271   439 0.63 AAA ATPase domain
MobB                 PF03205.9    140 sp|P10121|FTSY_ECOLI -            497    0.0018   17.9   0.3   1   1   2.8e-06    0.0018   17.9   0.3     2    32   295   325   294   380 0.94 Molybdopterin guanine dinucleotide synthesis protein B
ABC_tran             PF00005.22   137 sp|P10121|FTSY_ECOLI -            497    0.0019   18.5   0.1   1   1   2.9e-06    0.0019   18.5   0.1    13    88   295   403   284   429 0.68 ABC transporter
ArgK                 PF03308.11   267 sp|P10121|FTSY_ECOLI -            497    0.0035   16.1   0.3   1   2   2.9e-05     0.019   13.7   0.1    27    66   290   330   271   340 0.83 ArgK protein
AAA                  PF00004.24   132 sp|P10121|FTSY_ECOLI -            497     0.004   17.3   0.1   1   1   1.6e-05      0.01   16.0   0.1     1    90   296   401   296   433 0.66 ATPase family associated with various cellular activities (AAA)
AAA_14               PF13173.1    128 sp|P10121|FTSY_ECOLI -            497    0.0057   16.5   0.0   1   1   1.6e-05     0.011   15.6   0.0     3    74   294   372   292   419 0.69 AAA domain
AAA_24               PF13479.1    213 sp|P10121|FTSY_ECOLI -            497    0.0065   16.0   0.4   2   2   0.00021      0.13   11.7   0.4     4    82   294   389   291   410 0.76 AAA domain
DUF2075              PF09848.4    352 sp|P10121|FTSY_ECOLI -            497     0.011   14.6   0.2   1   1   3.4e-05     0.022   13.7   0.2     3   114   295   403   293   418 0.75 Uncharacterized conserved protein (DUF2075)
Thymidylate_kin      PF02223.12   186 sp|P10121|FTSY_ECOLI -            497     0.014   14.7   0.1   1   2   2.2e-05     0.014   14.7   0.1     3    29   300   326   299   336 0.92 Thymidylate kinase
AAA_19               PF13245.1     76 sp|P10121|FTSY_ECOLI -            497     0.019   14.7   0.7   1   1   6.6e-05     0.042   13.5   0.1    16    58   299   340   289   382 0.84 Part of AAA domain
AAA_17               PF13207.1    121 sp|P10121|FTSY_ECOLI -            497     0.024   15.4   0.3   1   1   0.00017      0.11   13.2   0.0     1    23   295   317   295   409 0.80 AAA domain
AAA_5                PF07728.9    139 sp|P10121|FTSY_ECOLI -            497     0.068   12.9   0.0   1   1   0.00026      0.17   11.5   0.0     2    47   296   342   295   411 0.71 AAA domain (dynein-related subfamily)
NTPase_1             PF03266.10   168 sp|P10121|FTSY_ECOLI -            497      0.22   11.2   3.2   1   2    0.0011      0.72    9.5   0.2     2    30   296   324   295   329 0.89 NTPase
KTI12                PF08433.5    270 sp|P10121|FTSY_ECOLI -            497      0.28   10.3   0.0   2   2   0.00043      0.28   10.3   0.0     4    41   296   333   293   355 0.86 Chromatin associated protein KTI12
cobW                 PF02492.14   178 sp|P10121|FTSY_ECOLI -            497      0.58    9.5   7.0   1   1   4.9e-05     0.032   13.6   0.6     2   105   295   401   294   453 0.71 CobW/HypB/UreG, nucleotide-binding domain
CbiA                 PF01656.18   195 sp|P10121|FTSY_ECOLI -            497      0.82    9.0  10.8   1   1   2.7e-05     0.018   14.4   1.2     9   142   303   439   295   457 0.60 CobQ/CobB/MinD/ParA nucleotide binding domain
FtsZ_C               PF12327.3     95 sp|P0A9A6|FTSZ_ECOLI -            383   9.3e-38  128.2   1.2   1   1   3.5e-41   2.6e-37  126.7   1.2     1    94   221   315   221   316 0.99 FtsZ family, C-terminal domain
Tubulin              PF00091.20   216 sp|P0A9A6|FTSZ_ECOLI -            383   2.4e-37  128.8   1.7   1   1   9.9e-41   7.3e-37  127.2   1.7     2   212    13   180    12   184 0.96 Tubulin/FtsZ family, GTPase domain
Aldolase_II          PF00596.16   184 sp|P0AB87|FUCA_ECOLI -            215   2.3e-48  164.2   1.1   1   1   1.8e-52   2.7e-48  164.0   1.1     1   184     8   182     8   182 0.94 Class II Aldolase and Adducin N-terminal domain
Fucose_iso_N1        PF07881.7    171 sp|P69922|FUCI_ECOLI -            591   1.9e-87  291.1   0.0   1   1   8.3e-91   3.1e-87  290.4   0.0     3   171     6   174     4   174 0.99 L-fucose isomerase, first N-terminal domain
Fucose_iso_N2        PF07882.7    181 sp|P69922|FUCI_ECOLI -            591   8.6e-81  269.9   1.0   1   1   3.7e-84   1.4e-80  269.2   1.0     1   181   175   355   175   355 0.99 L-fucose isomerase, second N-terminal domain
Fucose_iso_C         PF02952.12   142 sp|P69922|FUCI_ECOLI -            591   1.1e-54  183.8   0.0   1   1   4.5e-58   1.7e-54  183.2   0.0     2   142   385   554   384   554 0.94 L-fucose isomerase, C-terminal domain
Metallothio_PEC      PF02068.11    76 sp|P69922|FUCI_ECOLI -            591     0.087   13.2   1.4   1   1   4.7e-05      0.17   12.2   1.4     5    55    48    98    45   110 0.91 Plant PEC family metallothionein
FGGY_N               PF00370.16   245 sp|P11553|FUCK_ECOLI -            482   4.5e-86  288.1   0.0   1   1   1.2e-89   6.1e-86  287.7   0.0     1   245    15   259    15   259 0.99 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C               PF02782.11   198 sp|P11553|FUCK_ECOLI -            482   1.8e-24   86.4   0.9   1   1   3.1e-27   1.5e-23   83.4   0.9     3   196   269   448   268   450 0.80 FGGY family of carbohydrate kinases, C-terminal domain
RbsD_FucU            PF05025.8    142 sp|P0AEN8|FUCM_ECOLI -            140   2.2e-36  125.2   0.0   1   1   1.7e-40   2.5e-36  125.1   0.0     1   142     3   140     3   140 0.93 RbsD / FucU transport protein family
Fe-ADH               PF00465.14   366 sp|P0A9S1|FUCO_ECOLI -            382  4.6e-115  384.1   1.5   1   1  7.1e-119  5.3e-115  383.9   1.5     4   366    11   374     8   374 0.95 Iron-containing alcohol dehydrogenase
Fe-ADH_2             PF13685.1    250 sp|P0A9S1|FUCO_ECOLI -            382   4.6e-19   68.7   0.3   1   2   5.3e-15   3.9e-11   42.7   0.0     2    97    13   109    12   116 0.94 Iron-containing alcohol dehydrogenase
Fe-ADH_2             PF13685.1    250 sp|P0A9S1|FUCO_ECOLI -            382   4.6e-19   68.7   0.3   2   2   2.5e-09   1.9e-05   24.1   0.2    99   247   131   278   126   280 0.93 Iron-containing alcohol dehydrogenase
MFS_1                PF07690.11   352 sp|P11551|FUCP_ECOLI -            438   1.8e-21   76.2  31.2   1   2     6e-25   1.8e-21   76.2  31.2     3   329    33   377    29   382 0.78 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P11551|FUCP_ECOLI -            438     3e-06   26.1   7.6   1   1     1e-09     3e-06   26.1   7.6    43   181    52   221     5   246 0.78 Sugar (and other) transporter
DUF1228              PF06779.9     85 sp|P11551|FUCP_ECOLI -            438      0.05   13.6   0.5   1   2   1.7e-05      0.05   13.6   0.5    14    70    48   104    45   122 0.80 Protein of unknown function (DUF1228)
DUF3098              PF11297.3     69 sp|P11551|FUCP_ECOLI -            438      0.57    9.9   8.0   1   2    0.0002      0.59    9.8   0.5     6    58   115   167   112   174 0.83 Protein of unknown function (DUF3098)
DUF373               PF04123.8    344 sp|P11551|FUCP_ECOLI -            438       4.3    6.2  16.5   2   3   0.00021      0.62    9.0   3.2   170   278    98   221    86   251 0.71 Domain of unknown function (DUF373)
Fumerase             PF05681.9    271 sp|P14407|FUMB_ECOLI -            548   3.7e-91  304.9   0.0   1   1   6.3e-95   4.7e-91  304.6   0.0     2   271    48   328    47   328 0.98 Fumarate hydratase (Fumerase)
Fumerase_C           PF05683.7    206 sp|P14407|FUMB_ECOLI -            548     8e-83  276.6   0.0   1   1     2e-86   1.5e-82  275.7   0.0     1   204   332   539   332   541 0.98 Fumarase C-terminus
Fumerase             PF05681.9    271 sp|P0AC33|FUMA_ECOLI -            548   2.1e-89  299.2   0.0   1   1   3.5e-93   2.6e-89  298.9   0.0     2   271    48   328    47   328 0.98 Fumarate hydratase (Fumerase)
Fumerase_C           PF05683.7    206 sp|P0AC33|FUMA_ECOLI -            548   1.9e-84  281.8   0.0   1   1   5.4e-88     4e-84  280.8   0.0     1   204   332   539   332   541 0.98 Fumarase C-terminus
Lyase_1              PF00206.15   312 sp|P05042|FUMC_ECOLI -            467  1.2e-125  418.9   0.1   1   1  2.2e-129  1.7e-125  418.4   0.1     1   312    12   342    12   342 0.98 Lyase
FumaraseC_C          PF10415.4     55 sp|P05042|FUMC_ECOLI -            467   3.3e-26   91.0   0.7   2   2   1.3e-29   9.4e-26   89.6   0.1     1    54   408   461   408   462 0.98 Fumarase C C-terminus
FUR                  PF01475.14   120 sp|P0A9A9|FUR_ECOLI  -            148   5.3e-49  165.1   0.2   1   1   2.6e-52   6.3e-49  164.8   0.2     1   120    10   130    10   130 0.99 Ferric uptake regulator family
HTH_12               PF08461.5     66 sp|P0A9A9|FUR_ECOLI  -            148    0.0012   18.5   0.0   1   1   7.6e-07    0.0019   17.9   0.0     2    55    21    75    20    85 0.86 Ribonuclease R winged-helix domain
DUF4182              PF13790.1     38 sp|P0A9A9|FUR_ECOLI  -            148    0.0042   16.8   4.2   2   2     3e-05     0.075   12.8   0.5    23    38   128   143   123   143 0.84 Domain of unknown function (DUF4182)
PadR                 PF03551.9     75 sp|P0A9A9|FUR_ECOLI  -            148    0.0061   16.3   0.0   1   1   4.5e-06     0.011   15.4   0.0     1    68    22    85    22    89 0.77 Transcriptional regulator PadR-like family
PyrI_C               PF02748.10    52 sp|P0A9A9|FUR_ECOLI  -            148      0.11   11.9   0.0   1   1   7.1e-05      0.18   11.2   0.0    15    48    68   103    67   107 0.87 Aspartate carbamoyltransferase regulatory chain, metal binding domain
FxsA                 PF04186.8    120 sp|P37147|FXSA_ECOLI -            158   1.2e-36  124.9   8.3   1   1   1.9e-40   1.4e-36  124.7   8.3     1   113     6   118     6   127 0.93 FxsA cytoplasmic membrane protein
Gp_dh_C              PF02800.15   157 sp|P0A9B2|G3P1_ECOLI -            331   4.6e-75  250.3   0.1   1   1   1.7e-78   6.4e-75  249.8   0.1     1   157   155   312   155   312 1.00 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_N              PF00044.19   151 sp|P0A9B2|G3P1_ECOLI -            331   3.4e-60  202.3   0.6   1   2   1.6e-63   5.9e-60  201.5   0.2     1   151     3   150     3   150 0.99 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
DapB_N               PF01113.15   124 sp|P0A9B2|G3P1_ECOLI -            331   0.00052   19.9   3.4   1   2     4e-07    0.0015   18.4   1.4     1   103     3   124     3   135 0.75 Dihydrodipicolinate reductase, N-terminus
2-Hacid_dh_C         PF02826.14   178 sp|P0A9B2|G3P1_ECOLI -            331      0.03   13.4   0.1   1   2   2.3e-05     0.084   12.0   0.1    38    68     4    35     2    53 0.84 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Gp_dh_C              PF02800.15   157 sp|P33898|G3P3_ECOLI -            333   1.8e-60  202.9   0.1   1   1   9.6e-64   3.6e-60  201.9   0.1     1   157   155   313   155   313 0.98 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_N              PF00044.19   151 sp|P33898|G3P3_ECOLI -            333   2.8e-51  173.4   0.0   1   1   1.5e-54   5.4e-51  172.5   0.0     2   151     3   150     2   150 0.98 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
2-Hacid_dh_C         PF02826.14   178 sp|P33898|G3P3_ECOLI -            333     0.039   13.1   0.1   1   2   2.8e-05       0.1   11.7   0.0    37    66     2    33     1    48 0.76 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
NAD_binding_3        PF03447.11   117 sp|P33898|G3P3_ECOLI -            333     0.086   13.2   0.0   1   1   7.5e-05      0.28   11.5   0.0     1    91     8   121     8   128 0.84 Homoserine dehydrogenase, NAD binding domain
G6PD_C               PF02781.11   294 sp|P0AC53|G6PD_ECOLI -            491  1.1e-130  434.7   0.1   1   1  2.9e-134  1.4e-130  434.3   0.1     1   293   188   489   188   490 0.99 Glucose-6-phosphate dehydrogenase, C-terminal domain
G6PD_N               PF00479.17   183 sp|P0AC53|G6PD_ECOLI -            491   1.5e-59  201.3   0.0   1   2   7.1e-63   3.5e-59  200.1   0.0     1   183    13   186    13   186 0.99 Glucose-6-phosphate dehydrogenase, NAD binding domain
GFO_IDH_MocA         PF01408.17   120 sp|P0AC53|G6PD_ECOLI -            491   0.00055   20.4   0.0   1   1   2.4e-07    0.0012   19.3   0.0     5   109    45   163    43   173 0.71 Oxidoreductase family, NAD-binding Rossmann fold
PGI                  PF00342.14   486 sp|P0A6T1|G6PI_ECOLI -            549  9.6e-235  779.5   0.1   1   1  7.4e-239  1.1e-234  779.3   0.1     1   486    52   541    52   541 0.99 Phosphoglucose isomerase
Aldedh               PF00171.17   462 sp|P25526|GABD_ECOLI -            482  8.2e-176  584.8   0.1   1   1  1.2e-179  9.2e-176  584.7   0.1     1   461    19   477    19   478 0.99 Aldehyde dehydrogenase family
AA_permease          PF00324.16   478 sp|P25527|GABP_ECOLI -            466  4.3e-123  411.1  48.5   1   1  9.9e-127  4.9e-123  410.9  48.5     1   476    18   456    18   458 0.98 Amino acid permease
AA_permease_2        PF13520.1    426 sp|P25527|GABP_ECOLI -            466   1.3e-42  145.8  48.0   1   1   3.1e-46   1.5e-42  145.6  48.0     5   424    18   439    14   445 0.86 Amino acid permease
Spore_permease       PF03845.8    320 sp|P25527|GABP_ECOLI -            466   0.00038   19.2  20.2   1   1   7.7e-08   0.00038   19.2  20.2     6   230    18   257    14   262 0.72 Spore germination protein
Aminotran_3          PF00202.16   339 sp|P22256|GABT_ECOLI -            426  2.6e-121  404.6   0.1   1   1  4.2e-125  3.1e-121  404.3   0.1     2   338    27   360    26   361 0.98 Aminotransferase class-III
Aminotran_1_2        PF00155.16   363 sp|P22256|GABT_ECOLI -            426     0.092   11.6   0.0   1   1   2.1e-05      0.16   10.8   0.0    19   269    61   317    43   415 0.68 Aminotransferase class I and II
AA_permease_2        PF13520.1    426 sp|P63235|GADC_ECOLI -            511   2.2e-57  194.5  52.9   1   1   3.6e-61   2.7e-57  194.2  52.9     1   424    13   452    13   457 0.92 Amino acid permease
AA_permease          PF00324.16   478 sp|P63235|GADC_ECOLI -            511     8e-21   73.9  45.9   1   1   1.6e-24   1.2e-20   73.3  45.9    20   463    32   461    15   475 0.78 Amino acid permease
GalKase_gal_bdg      PF10509.4     52 sp|P0A6T3|GAL1_ECOLI -            382   2.8e-23   80.9   0.1   1   1   9.9e-27   4.9e-23   80.1   0.1     2    52     9    59     8    59 0.96 Galactokinase galactose-binding signature
GHMP_kinases_N       PF00288.21    67 sp|P0A6T3|GAL1_ECOLI -            382   3.1e-14   52.7   0.2   1   1   1.1e-17   5.6e-14   51.9   0.2     2    66   115   181   114   182 0.94 GHMP kinases N terminal domain
GHMP_kinases_C       PF08544.8     85 sp|P0A6T3|GAL1_ECOLI -            382   2.5e-13   50.0   0.1   1   1   1.3e-16   6.5e-13   48.6   0.1     2    84   279   361   278   362 0.93 GHMP kinases C terminal
GalP_UDP_transf      PF01087.17   183 sp|P09148|GAL7_ECOLI -            348   8.3e-72  241.0   0.2   1   1   2.5e-75   1.2e-71  240.5   0.2     2   183     3   176     2   176 0.98 Galactose-1-phosphate uridyl transferase, N-terminal domain
GalP_UDP_tr_C        PF02744.12   167 sp|P09148|GAL7_ECOLI -            348   3.1e-71  238.3   0.1   2   2   2.6e-74   1.3e-70  236.2   0.1     2   165   183   345   182   347 0.98 Galactose-1-phosphate uridyl transferase, C-terminal domain
HIT                  PF01230.18    98 sp|P09148|GAL7_ECOLI -            348   6.9e-05   23.3   0.0   2   2   2.7e-07    0.0014   19.1   0.0     6    66   210   270   206   302 0.90 HIT domain
Epimerase            PF01370.16   236 sp|P09147|GALE_ECOLI -            338   3.1e-58  197.0   0.0   1   1   3.1e-61   3.8e-58  196.7   0.0     1   236     3   262     3   262 0.97 NAD dependent epimerase/dehydratase family
Epimerase_Csub       PF13950.1     62 sp|P09147|GALE_ECOLI -            338     3e-26   91.1   1.2   1   1   4.2e-29   5.2e-26   90.3   1.2     1    62   275   336   275   336 0.99 UDP-glucose 4-epimerase C-term subunit
3Beta_HSD            PF01073.14   280 sp|P09147|GALE_ECOLI -            338   5.2e-21   74.5   0.0   1   2   2.2e-23   2.8e-20   72.1   0.0     1   157     4   160     4   167 0.87 3-beta hydroxysteroid dehydrogenase/isomerase family
Polysacc_synt_2      PF02719.10   294 sp|P09147|GALE_ECOLI -            338   3.9e-18   65.3   0.0   1   1     3e-20   3.7e-17   62.1   0.0     1   173     3   182     3   186 0.75 Polysaccharide biosynthesis protein
RmlD_sub_bind        PF04321.12   287 sp|P09147|GALE_ECOLI -            338   2.1e-14   53.1   0.0   1   1   3.4e-17   4.2e-14   52.0   0.0     1   139     1   163     1   173 0.94 RmlD substrate binding domain
adh_short            PF00106.20   167 sp|P09147|GALE_ECOLI -            338   7.5e-11   42.2   0.0   1   1   1.2e-13   1.5e-10   41.2   0.0     3   137     3   126     2   138 0.85 short chain dehydrogenase
NAD_binding_10       PF13460.1    183 sp|P09147|GALE_ECOLI -            338   2.6e-10   40.5   0.0   1   1   3.6e-13   4.4e-10   39.8   0.0     1   140     3   172     3   202 0.80 NADH(P)-binding
NAD_binding_4        PF07993.7    249 sp|P09147|GALE_ECOLI -            338   4.4e-10   38.9   0.0   1   1   3.1e-12   3.8e-09   35.8   0.0     1   185     5   166     5   220 0.77 Male sterility protein
NmrA                 PF05368.8    233 sp|P09147|GALE_ECOLI -            338   4.5e-10   39.1   0.0   1   2   7.2e-11   8.9e-08   31.6   0.0     1   115     3   135     3   142 0.83 NmrA-like family
KR                   PF08659.5    181 sp|P09147|GALE_ECOLI -            338   6.6e-08   32.4   0.0   1   1   9.4e-11   1.2e-07   31.6   0.0     3   149     3   136     2   139 0.84 KR domain
UDPG_MGDP_dh_N       PF03721.9    185 sp|P09147|GALE_ECOLI -            338   0.00064   19.1   0.1   1   1   9.3e-07    0.0012   18.3   0.1     2    31     2    32     1    40 0.85 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
Semialdhyde_dh       PF01118.19   121 sp|P09147|GALE_ECOLI -            338     0.012   15.8   0.0   1   1   1.7e-05     0.021   15.1   0.0     1    71     2    78     2   128 0.79 Semialdehyde dehydrogenase, NAD binding domain
NTP_transferase      PF00483.18   248 sp|P0AAB6|GALF_ECOLI -            297   1.1e-21   77.2   0.0   1   1   2.9e-25   1.4e-21   76.9   0.0     1   242     5   273     5   278 0.87 Nucleotidyl transferase
NTP_transf_3         PF12804.2    160 sp|P0AAB6|GALF_ECOLI -            297   1.4e-07   31.7   0.0   1   1   4.2e-11   2.1e-07   31.1   0.0     1   111     6   147     6   257 0.76 MobA-like NTP transferase domain
EFP_N                PF08207.7     58 sp|P0AAB6|GALF_ECOLI -            297     0.072   12.9   0.5   2   2   4.6e-05      0.23   11.3   0.2    28    50   267   289   264   292 0.89 Elongation factor P (EF-P) KOW-like domain
Aldose_epim          PF01263.15   300 sp|P0A9C3|GALM_ECOLI -            346   2.9e-91  305.6   0.0   1   1   2.2e-95   3.3e-91  305.5   0.0     2   300    17   342    16   342 0.99 Aldose 1-epimerase
Sugar_tr             PF00083.19   451 sp|P0AEP1|GALP_ECOLI -            464  3.9e-138  460.8  29.0   1   1  1.8e-141  4.4e-138  460.6  29.0     1   449    18   449    18   451 0.97 Sugar (and other) transporter
MFS_1                PF07690.11   352 sp|P0AEP1|GALP_ECOLI -            464   6.5e-40  136.9  44.7   1   2   2.1e-32   5.2e-29  101.0  19.1     2   240    23   284    22   287 0.81 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P0AEP1|GALP_ECOLI -            464   6.5e-40  136.9  44.7   2   2   6.7e-15   1.6e-11   43.5  21.2     3   183   258   447   252   461 0.83 Major Facilitator Superfamily
MFS_2                PF13347.1    428 sp|P0AEP1|GALP_ECOLI -            464   8.5e-11   40.8  34.7   1   3   2.9e-08   7.2e-05   21.3   5.3   232   343    24   133    10   138 0.87 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P0AEP1|GALP_ECOLI -            464   8.5e-11   40.8  34.7   2   3   1.7e-08   4.3e-05   22.0  13.2   171   339   166   373   137   378 0.72 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P0AEP1|GALP_ECOLI -            464   8.5e-11   40.8  34.7   3   3   0.00035      0.86    7.9   1.2   145   200   390   441   380   460 0.74 MFS/sugar transport protein
TRI12                PF06609.8    599 sp|P0AEP1|GALP_ECOLI -            464   2.3e-09   36.0   5.3   1   2   9.2e-13   2.3e-09   36.0   5.3    39   228    10   201     2   210 0.80 Fungal trichothecene efflux pump (TRI12)
OATP                 PF03137.15   539 sp|P0AEP1|GALP_ECOLI -            464    0.0037   15.3  11.8   1   2   0.00036      0.89    7.5   1.6     4    87    17   101    14   106 0.88 Organic Anion Transporter Polypeptide (OATP) family
OATP                 PF03137.15   539 sp|P0AEP1|GALP_ECOLI -            464    0.0037   15.3  11.8   2   2   8.2e-06      0.02   12.9   3.0   223   405   165   350   142   369 0.70 Organic Anion Transporter Polypeptide (OATP) family
SHR3_chaperone       PF08229.6    196 sp|P0AEP1|GALP_ECOLI -            464       3.8    6.4   9.4   2   2   0.00022      0.55    9.1   2.2    54   103   314   363   306   436 0.77 ER membrane protein SH3
NTP_transferase      PF00483.18   248 sp|P0AEP3|GALU_ECOLI -            302   2.6e-25   89.1   0.0   1   1     9e-29   3.3e-25   88.8   0.0     1   241    10   275    10   280 0.87 Nucleotidyl transferase
NTP_transf_3         PF12804.2    160 sp|P0AEP3|GALU_ECOLI -            302   2.7e-08   34.0   0.0   1   1   1.1e-11     4e-08   33.4   0.0     1   117    11   165    11   230 0.79 MobA-like NTP transferase domain
IspD                 PF01128.14   221 sp|P0AEP3|GALU_ECOLI -            302    0.0031   17.0   0.0   1   1     2e-06    0.0073   15.8   0.0     3    55    11    65     9    82 0.82 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
CTP_transf_3         PF02348.14   217 sp|P0AEP3|GALU_ECOLI -            302      0.06   12.9   0.1   1   1   2.6e-05     0.096   12.2   0.1    16    51    31    66    27    96 0.83 Cytidylyltransferase
GD_AH_C              PF04295.8    397 sp|P39829|GARD_ECOLI -            523  3.5e-148  493.5   0.1   1   1  5.3e-152    4e-148  493.3   0.1     2   396   117   522   116   523 0.97 D-galactarate dehydratase / Altronate hydrolase, C terminus
SAF                  PF08666.7     63 sp|P39829|GARD_ECOLI -            523   5.4e-14   52.3   1.0   1   2   2.2e-17   1.6e-13   50.7   0.3     1    62    22    91    22    92 0.98 SAF domain
HpcH_HpaI            PF03328.9    221 sp|P23522|GARL_ECOLI -            256   9.8e-62  207.7   0.0   1   1   1.5e-65   1.1e-61  207.5   0.0     1   219    20   244    20   246 0.97 HpcH/HpaI aldolase/citrate lyase family
PK                   PF00224.16   348 sp|P23522|GARL_ECOLI -            256   0.00011   20.8   0.0   1   1   1.9e-08   0.00014   20.6   0.0   195   254   123   184    76   214 0.80 Pyruvate kinase, barrel domain
MFS_1                PF07690.11   352 sp|P0AA80|GARP_ECOLI -            444   1.4e-53  181.8  48.3   1   2   5.2e-51   3.8e-47  160.7  37.0     1   314    23   364    23   365 0.83 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P0AA80|GARP_ECOLI -            444   1.4e-53  181.8  48.3   2   2     2e-12   1.5e-08   33.7  12.8    62   171   324   433   318   442 0.86 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P0AA80|GARP_ECOLI -            444   7.5e-08   31.3  37.2   1   1   3.4e-11   2.5e-07   29.6  37.3    16   437    19   434    11   438 0.75 Sugar (and other) transporter
NAD_binding_2        PF03446.10   163 sp|P0ABQ2|GARR_ECOLI -            294   1.2e-53  181.3   2.4   1   1   1.5e-56   1.9e-53  180.6   2.4     2   163     1   162     1   162 0.98 NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11       PF14833.1    122 sp|P0ABQ2|GARR_ECOLI -            294   7.6e-37  126.0   2.4   1   1   6.1e-40   7.6e-37  126.0   2.4     1   121   164   283   164   284 0.98 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
F420_oxidored        PF03807.12    96 sp|P0ABQ2|GARR_ECOLI -            294   9.9e-10   38.7   2.3   1   2   3.8e-12   4.7e-09   36.5   0.4     1    93     2    93     2    95 0.80 NADP oxidoreductase coenzyme F420-dependent
2-Hacid_dh_C         PF02826.14   178 sp|P0ABQ2|GARR_ECOLI -            294   3.6e-08   32.7   0.2   1   1   8.6e-11   1.1e-07   31.2   0.1    38   158     2   125     1   135 0.86 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
3HCDH_N              PF02737.13   180 sp|P0ABQ2|GARR_ECOLI -            294   6.7e-05   22.6   1.3   1   1   8.4e-08    0.0001   21.9   0.2     1    84     2    82     2    90 0.78 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
IlvN                 PF07991.7    165 sp|P0ABQ2|GARR_ECOLI -            294   0.00047   19.5   0.4   1   1   8.8e-07    0.0011   18.3   0.1     6    72     2    68     1    90 0.83 Acetohydroxy acid isomeroreductase, catalytic domain
Shikimate_DH         PF01488.15   135 sp|P0ABQ2|GARR_ECOLI -            294   0.00051   20.1   1.8   1   2     8e-07   0.00099   19.2   0.2    14   109     2    94     1   114 0.81 Shikimate / quinate 5-dehydrogenase
AlaDh_PNT_N          PF05222.10   136 sp|P0ABQ2|GARR_ECOLI -            294    0.0024   17.8   0.0   1   1   4.5e-06    0.0056   16.6   0.0    22   113    18   117    15   120 0.78 Alanine dehydrogenase/PNT, N-terminal domain
TrkA_N               PF02254.13   116 sp|P0ABQ2|GARR_ECOLI -            294    0.0033   17.4   0.0   1   1   8.3e-06      0.01   15.8   0.0     4    73     6    67     3    76 0.80 TrkA-N domain
NAD_binding_10       PF13460.1    183 sp|P0ABQ2|GARR_ECOLI -            294    0.0048   16.9   0.0   1   1   6.9e-06    0.0085   16.1   0.0     8    73     9    69     3   114 0.82 NADH(P)-binding
UDPG_MGDP_dh_N       PF03721.9    185 sp|P0ABQ2|GARR_ECOLI -            294    0.0075   15.6   0.1   1   2   2.4e-05     0.029   13.7   0.0     1    39     1    39     1    50 0.93 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
GFO_IDH_MocA         PF01408.17   120 sp|P0ABQ2|GARR_ECOLI -            294    0.0077   16.7   0.2   1   1   2.1e-05     0.026   15.0   0.1     1    77     1    71     1    81 0.90 Oxidoreductase family, NAD-binding Rossmann fold
ADH_N                PF08240.7    109 sp|P0A9S3|GATD_ECOLI -            346   1.8e-29  101.6   0.0   1   1   3.2e-32   3.1e-29  100.9   0.0     2   108    26   130    25   131 0.95 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N           PF00107.21   130 sp|P0A9S3|GATD_ECOLI -            346   4.9e-22   77.8   0.0   1   1     1e-24     1e-21   76.8   0.0     2   128   172   306   171   308 0.90 Zinc-binding dehydrogenase
AlaDh_PNT_C          PF01262.16   168 sp|P0A9S3|GATD_ECOLI -            346   0.00015   21.3   0.0   1   1   2.9e-07   0.00028   20.4   0.0    14    69   155   211   150   228 0.86 Alanine dehydrogenase/PNT, C-terminal domain
3HCDH_N              PF02737.13   180 sp|P0A9S3|GATD_ECOLI -            346   0.00056   19.6   0.2   1   1   8.3e-07   0.00082   19.0   0.2     1    88   163   248   163   258 0.83 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
ADH_zinc_N_2         PF13602.1    127 sp|P0A9S3|GATD_ECOLI -            346    0.0013   19.5   0.0   1   1   2.2e-06    0.0022   18.9   0.0    22   127   232   344   183   344 0.73 Zinc-binding dehydrogenase
Shikimate_DH         PF01488.15   135 sp|P0A9S3|GATD_ECOLI -            346    0.0027   17.7   0.1   1   1   4.4e-06    0.0044   17.1   0.1     8    68   157   214   151   262 0.73 Shikimate / quinate 5-dehydrogenase
2-Hacid_dh_C         PF02826.14   178 sp|P0A9S3|GATD_ECOLI -            346    0.0041   16.2   0.0   1   1   6.4e-06    0.0064   15.6   0.0    31    76   156   202   147   221 0.80 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
PrmA                 PF06325.8    295 sp|P0A9S3|GATD_ECOLI -            346      0.05   12.7   0.1   1   1   7.3e-05     0.072   12.2   0.1   161   201   160   202   150   228 0.82 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_18      PF12847.2    112 sp|P0A9S3|GATD_ECOLI -            346     0.061   13.8   0.0   1   1   0.00011      0.11   13.0   0.0     2    43   161   210   160   289 0.72 Methyltransferase domain
ELFV_dehydrog        PF00208.16   244 sp|P0A9S3|GATD_ECOLI -            346     0.082   12.4   0.2   1   1   0.00014      0.14   11.7   0.2    30    65   159   194   148   209 0.90 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
FAD_binding_2        PF00890.19   417 sp|P0A9S3|GATD_ECOLI -            346     0.094   11.5   0.1   1   1   0.00012      0.12   11.2   0.1     2    60   164   221   163   294 0.80 FAD binding domain
TrkA_N               PF02254.13   116 sp|P0A9S3|GATD_ECOLI -            346       0.1   12.6   0.0   1   1   0.00018      0.17   11.8   0.0     1    41   164   205   164   226 0.90 TrkA-N domain
UDPG_MGDP_dh_N       PF03721.9    185 sp|P0A9S3|GATD_ECOLI -            346      0.11   11.8   0.0   1   1   0.00019      0.19   11.1   0.0     2    40   163   202   162   235 0.85 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
MTS                  PF05175.9    170 sp|P0A9S3|GATD_ECOLI -            346      0.13   11.6   0.1   1   1    0.0002       0.2   11.0   0.1    30    96   158   226   149   250 0.79 Methyltransferase small domain
ThiF                 PF00899.16   136 sp|P0A9S3|GATD_ECOLI -            346      0.16   11.8   0.3   1   1   0.00028      0.28   11.0   0.3     2    33   161   192   160   195 0.94 ThiF family
F_bP_aldolase        PF01116.15   287 sp|P0C8J6|GATY_ECOLI -            284  4.2e-107  357.5   1.3   1   1  6.4e-111  4.7e-107  357.3   1.3     2   287     3   284     2   284 0.99 Fructose-bisphosphate aldolase class-II
CbiJ                 PF02571.9    250 sp|P0C8J6|GATY_ECOLI -            284    0.0015   17.9   0.3   1   1     3e-07    0.0022   17.3   0.3    29    94    65   129    35   167 0.86 Precorrin-6x reductase CbiJ/CobK
Tagatose_6_P_K       PF08013.6    424 sp|P0C8J8|GATZ_ECOLI -            420  4.8e-199  661.1   0.1   1   1  3.6e-203  5.3e-199  660.9   0.1     4   423     1   419     1   420 0.99 Tagatose 6 phosphate kinase
GTP_cyclohydroI      PF01227.17   179 sp|P0A6T5|GCH1_ECOLI -            222   1.3e-63  213.5   0.3   1   1     2e-67   1.5e-63  213.3   0.3     2   178    41   218    40   219 0.97 GTP cyclohydrolase I
QueF                 PF14489.1     81 sp|P0A6T5|GCH1_ECOLI -            222     0.024   14.5   0.0   1   1   6.1e-06     0.045   13.6   0.0     5    57   121   173   119   181 0.88 QueF-like protein
TPP_enzyme_N         PF02776.13   172 sp|P0AEP7|GCL_ECOLI  -            593   2.2e-54  183.5   2.8   1   2   4.4e-56   2.2e-52  177.0   1.3     1   170     4   173     4   175 0.98 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_C         PF02775.16   153 sp|P0AEP7|GCL_ECOLI  -            593   5.7e-36  123.3   0.3   2   2   1.2e-37   5.7e-34  116.8   0.1     2   153   393   553   392   553 0.96 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
TPP_enzyme_M         PF00205.17   137 sp|P0AEP7|GCL_ECOLI  -            593   1.1e-34  119.1   0.6   1   1   4.8e-38   2.4e-34  118.0   0.1     1   136   193   328   193   329 0.94 Thiamine pyrophosphate enzyme, central domain
GCS2                 PF04107.8    288 sp|P77213|GCS2_ECOLI -            372   3.9e-94  314.9   0.0   1   2   1.8e-97     9e-94  313.7   0.0     1   288    14   292    14   292 0.99 Glutamate-cysteine ligase family 2(GCS2)
Glu_cys_ligase       PF04262.9    377 sp|P77213|GCS2_ECOLI -            372      0.04   12.4   0.1   1   2   2.6e-05      0.13   10.7   0.0    20    92    13    88     7    93 0.80 Glutamate-cysteine ligase
GCS                  PF03074.11   371 sp|P77213|GCS2_ECOLI -            372     0.083   11.9   0.0   1   1   3.1e-05      0.16   11.0   0.0    21    56   141   176   132   193 0.80 Glutamate-cysteine ligase
GCV_H                PF01597.14   122 sp|P0A6T9|GCSH_ECOLI -            129   2.2e-50  169.4   0.1   1   1     5e-54   2.5e-50  169.2   0.1     1   121     8   128     8   129 0.99 Glycine cleavage H-protein
Biotin_lipoyl        PF00364.17    74 sp|P0A6T9|GCSH_ECOLI -            129   0.00091   18.8   0.1   1   1   3.6e-07    0.0018   17.8   0.1    23    57    47    81    40    88 0.93 Biotin-requiring enzyme
RnfC_N               PF13375.1    101 sp|P0A6T9|GCSH_ECOLI -            129    0.0027   17.3   0.0   1   1   6.9e-07    0.0034   17.0   0.0    47    89    47    90     5    94 0.83 RnfC Barrel sandwich hybrid domain
GDC-P                PF02347.11   429 sp|P33195|GCSP_ECOLI -            957  1.5e-202  673.0   4.9   1   2  1.4e-192  5.1e-189  628.4   2.0     1   429    16   440    16   440 0.99 Glycine cleavage system P-protein
GDC-P                PF02347.11   429 sp|P33195|GCSP_ECOLI -            957  1.5e-202  673.0   4.9   2   2   6.8e-14   2.5e-10   39.6   0.1    42   288   475   739   454   808 0.81 Glycine cleavage system P-protein
Beta_elim_lyase      PF01212.16   290 sp|P33195|GCSP_ECOLI -            957   4.4e-08   32.6   1.7   2   2   3.7e-11   1.4e-07   31.0   0.2    27   166   545   683   540   716 0.79 Beta-eliminating lyase
Aminotran_5          PF00266.14   371 sp|P33195|GCSP_ECOLI -            957   0.00015   20.6   1.5   2   2   4.2e-06     0.015   14.0   0.1   110   207   613   715   578   718 0.78 Aminotransferase class-V
Pyridoxal_deC        PF00282.14   373 sp|P33195|GCSP_ECOLI -            957     0.023   13.1   0.5   2   3   0.00022      0.83    8.0   0.1   122   232   582   683   546   689 0.78 Pyridoxal-dependent decarboxylase conserved domain
GCV_T                PF01571.16   211 sp|P27248|GCST_ECOLI -            364   8.2e-68  227.9   0.1   1   1   3.1e-71   1.2e-67  227.4   0.1     1   211    46   254    46   254 0.93 Aminomethyltransferase folate-binding domain
GCV_T_C              PF08669.6     95 sp|P27248|GCST_ECOLI -            364   3.1e-18   65.5   0.1   1   1   1.5e-21   5.7e-18   64.7   0.1     1    94   262   353   262   354 0.91 Glycine cleavage T-protein C-terminal barrel domain
TrmE_N               PF10396.4    114 sp|P27248|GCST_ECOLI -            364    0.0074   16.2   0.0   1   3   4.4e-05      0.16   11.9   0.0    12    71    50   119    39   139 0.81 GTP-binding protein TrmE N-terminus
POPLD                PF08170.7     92 sp|P27248|GCST_ECOLI -            364      0.01   15.6   0.0   1   1     5e-06     0.019   14.8   0.0     2    46   195   239   194   250 0.89 POPLD (NUC188) domain
Poly_export          PF02563.11    83 sp|P0A932|GFCE_ECOLI -            379   8.2e-29   99.1   0.6   1   3   6.8e-32   5.1e-28   96.6   0.1     4    82    77   166    74   167 0.87 Polysaccharide biosynthesis/export protein
SLBB                 PF10531.4     59 sp|P0A932|GFCE_ECOLI -            379   6.6e-17   61.1   1.0   1   2     4e-11     3e-07   30.2   0.1     3    47   174   219   172   225 0.93 SLBB domain
SLBB                 PF10531.4     59 sp|P0A932|GFCE_ECOLI -            379   6.6e-17   61.1   1.0   2   2   8.6e-11   6.3e-07   29.1   0.1     1    53   256   307   256   313 0.92 SLBB domain
G_glu_transpept      PF01019.16   510 sp|P18956|GGT_ECOLI  -            580  6.1e-187  622.1   0.5   1   1  4.7e-191    7e-187  621.9   0.5     2   508    64   572    63   574 0.99 Gamma-glutamyltranspeptidase
DUF2566              PF10753.4     55 sp|P64646|GHOT_ECOLI -             57     2e-28   98.0   9.3   1   1   4.3e-32   2.1e-28   97.9   9.3     1    55     3    57     3    57 0.98 Protein of unknown function (DUF2566)
E1-E2_ATPase         PF00122.15   230 sp|P64646|GHOT_ECOLI -             57      0.77    8.7   5.2   1   1   0.00016      0.79    8.7   5.2   150   207     1    55     1    57 0.74 E1-E2 ATPase
2-Hacid_dh_C         PF02826.14   178 sp|P75913|GHRA_ECOLI -            312   5.7e-45  152.6   0.0   1   1   2.5e-48   7.3e-45  152.2   0.0     2   178   105   277   104   277 0.95 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
NAD_binding_2        PF03446.10   163 sp|P75913|GHRA_ECOLI -            312   6.8e-06   26.0   0.0   1   2   6.1e-09   1.8e-05   24.6   0.0     3    91   138   223   136   228 0.91 NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_10       PF13460.1    183 sp|P75913|GHRA_ECOLI -            312     0.034   14.1   0.0   1   1   1.8e-05     0.054   13.4   0.0     1    76   139   211   139   246 0.82 NADH(P)-binding
DUF551               PF04448.7     69 sp|P75913|GHRA_ECOLI -            312     0.056   14.1   0.6   1   1    0.0001      0.31   11.8   0.6    49    66   114   131    78   132 0.77 Protein of unknown function (DUF551)
NAD_Gly3P_dh_N       PF01210.18   157 sp|P75913|GHRA_ECOLI -            312      0.12   12.1   0.0   1   1   8.3e-05      0.25   11.0   0.0     2    34   139   171   138   201 0.84 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
2-Hacid_dh_C         PF02826.14   178 sp|P37666|GHRB_ECOLI -            324   1.5e-62  209.8   0.0   1   1     5e-66   2.5e-62  209.1   0.0     1   178   108   287   108   287 0.97 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
2-Hacid_dh           PF00389.25   133 sp|P37666|GHRB_ECOLI -            324   2.4e-31  107.9   0.1   1   1   5.6e-35   2.8e-31  107.7   0.1     1   133     5   319     5   319 0.97 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
NAD_binding_2        PF03446.10   163 sp|P37666|GHRB_ECOLI -            324   7.5e-05   22.6   0.0   2   2   6.2e-08   0.00031   20.6   0.0     2   117   146   259   145   267 0.83 NAD binding domain of 6-phosphogluconate dehydrogenase
Xan_ur_permease      PF00860.15   389 sp|P0AF52|GHXP_ECOLI -            449   1.8e-88  296.6  48.3   1   1   1.6e-92   2.3e-88  296.3  48.3     1   388    26   409    26   410 0.99 Permease family
Xan_ur_permease      PF00860.15   389 sp|Q46817|GHXQ_ECOLI -            455   1.4e-78  264.1  50.1   1   1   1.3e-82     2e-78  263.6  50.1     1   388    32   415    32   416 0.98 Permease family
Lactate_perm         PF02652.9    522 sp|Q46839|GLCA_ECOLI -            560  3.5e-206  685.7  45.3   1   1  2.7e-210    4e-206  685.5  45.3     1   521    16   549    16   550 0.98 L-lactate permease
FAD-oxidase_C        PF02913.14   248 sp|P0AEP9|GLCD_ECOLI -            499   1.4e-65  221.0   0.0   1   1   2.6e-69   1.9e-65  220.6   0.0     1   247   230   470   230   471 0.99 FAD linked oxidases, C-terminal domain
FAD_binding_4        PF01565.18   139 sp|P0AEP9|GLCD_ECOLI -            499   1.3e-35  121.9   1.1   1   2   3.3e-39   2.4e-35  121.0   0.2     1   139    56   195    56   195 0.98 FAD binding domain
DUF336               PF03928.9    132 sp|P0AEQ1|GLCG_ECOLI -            134   1.5e-37  128.3   5.3   1   1   3.3e-41   1.7e-37  128.2   5.3     3   131     7   131     5   132 0.96 Domain of unknown function (DUF336)
GAF_2                PF13185.1    148 sp|P0AEQ1|GLCG_ECOLI -            134     0.025   15.0   0.1   1   1   5.8e-06     0.028   14.8   0.1    26   138    32   127     7   134 0.64 GAF domain
YPEB                 PF14620.1    361 sp|P0AEQ1|GLCG_ECOLI -            134      0.12   11.3   0.1   1   1   3.2e-05      0.16   10.9   0.1   248   304    20    80     8    85 0.80 YpeB sporulation
Fe-ADH               PF00465.14   366 sp|P0A9S5|GLDA_ECOLI -            367   1.8e-63  214.3   5.8   1   1   4.5e-67   2.2e-63  214.0   5.8     1   366     8   348     8   348 0.92 Iron-containing alcohol dehydrogenase
Fe-ADH_2             PF13685.1    250 sp|P0A9S5|GLDA_ECOLI -            367   1.4e-33  116.2   0.0   1   1   3.6e-37   1.8e-33  115.9   0.0     3   250    14   276    12   276 0.82 Iron-containing alcohol dehydrogenase
DHQ_synthase         PF01761.15   261 sp|P0A9S5|GLDA_ECOLI -            367    0.0037   16.2   4.2   1   1   2.9e-05      0.14   11.0   4.2    33   248    87   316    79   327 0.65 3-dehydroquinate synthase
GLF                  PF03275.8    204 sp|P37747|GLF_ECOLI  -            367     1e-84  283.1   3.8   1   1   1.4e-87   1.5e-84  282.5   3.8     2   204   147   346   146   346 0.99 UDP-galactopyranose mutase
NAD_binding_8        PF13450.1     68 sp|P37747|GLF_ECOLI  -            367   1.5e-20   72.9   0.0   1   1   3.7e-23     4e-20   71.6   0.0     1    68     6    72     6    72 0.95 NAD(P)-binding Rossmann-like domain
Pyr_redox            PF00070.22    80 sp|P37747|GLF_ECOLI  -            367   2.5e-05   24.5   0.1   1   1   5.5e-08   5.9e-05   23.4   0.1     3    43     5    46     3    57 0.91 Pyridine nucleotide-disulphide oxidoreductase
DAO                  PF01266.19   358 sp|P37747|GLF_ECOLI  -            367   4.4e-05   22.5   0.0   1   1   6.1e-08   6.4e-05   22.0   0.0     1    36     3    39     3    47 0.94 FAD dependent oxidoreductase
Amino_oxidase        PF01593.19   450 sp|P37747|GLF_ECOLI  -            367     5e-05   22.5   0.0   1   1   6.9e-08   7.3e-05   22.0   0.0     5    66    15    75    13   129 0.85 Flavin containing amine oxidoreductase
FAD_binding_2        PF00890.19   417 sp|P37747|GLF_ECOLI  -            367    0.0001   21.2   0.0   1   1   1.5e-07   0.00016   20.6   0.0     1    38     3    40     3    43 0.95 FAD binding domain
Pyr_redox_2          PF07992.9    201 sp|P37747|GLF_ECOLI  -            367   0.00042   20.2   0.1   1   1     9e-07   0.00096   19.0   0.1     1    37     3    39     3    60 0.92 Pyridine nucleotide-disulphide oxidoreductase
FAD_oxidored         PF12831.2    428 sp|P37747|GLF_ECOLI  -            367   0.00048   19.3   0.0   1   1   6.7e-07   0.00071   18.7   0.0     1    38     3    40     3   123 0.82 FAD dependent oxidoreductase
Thi4                 PF01946.12   230 sp|P37747|GLF_ECOLI  -            367    0.0018   17.3   0.0   1   1   2.7e-06    0.0029   16.7   0.0    19    57     3    41     1    47 0.94 Thi4 family
HI0933_like          PF03486.9    409 sp|P37747|GLF_ECOLI  -            367     0.003   16.0   0.0   1   1   6.4e-06    0.0068   14.9   0.0     1    36     2    37     2    41 0.95 HI0933-like protein
Lycopene_cycl        PF05834.7    374 sp|P37747|GLF_ECOLI  -            367      0.01   14.7   0.0   1   1   1.3e-05     0.014   14.3   0.0     1    53     3    52     3    69 0.83 Lycopene cyclase protein
TrkA_N               PF02254.13   116 sp|P37747|GLF_ECOLI  -            367     0.015   15.2   0.1   1   1   2.9e-05     0.031   14.2   0.1     1    31     4    34     4    53 0.86 TrkA-N domain
GDI                  PF00996.13   439 sp|P37747|GLF_ECOLI  -            367     0.016   13.5   0.1   1   1   2.3e-05     0.024   12.9   0.1     5    43     2    40     1    49 0.95 GDP dissociation inhibitor
FAD_binding_3        PF01494.14   356 sp|P37747|GLF_ECOLI  -            367     0.019   14.0   0.0   1   1   2.5e-05     0.027   13.5   0.0     4    34     4    34     1    40 0.92 FAD binding domain
Glyco_transf_5       PF08323.6    245 sp|P0A6U8|GLGA_ECOLI -            477   1.2e-72  244.3   0.2   1   2   2.3e-75   6.7e-72  241.9   0.0     1   244     2   233     2   234 0.92 Starch synthase catalytic domain
Glycos_transf_1      PF00534.15   172 sp|P0A6U8|GLGA_ECOLI -            477   2.4e-16   59.6   0.0   1   1   1.3e-19   3.9e-16   58.9   0.0    12   155   289   438   283   448 0.93 Glycosyl transferases group 1
Glyco_trans_4_4      PF13579.1    160 sp|P0A6U8|GLGA_ECOLI -            477   2.7e-10   40.6   8.7   1   2   2.7e-12     8e-09   35.8   5.3     1   144    17   219    17   225 0.58 Glycosyl transferase 4-like domain
Glyco_trans_1_4      PF13692.1    135 sp|P0A6U8|GLGA_ECOLI -            477   0.00034   20.7   0.0   1   1   2.3e-07   0.00069   19.7   0.0     3   123   293   427   291   439 0.64 Glycosyl transferases group 1
Glyco_transf_4       PF13439.1    177 sp|P0A6U8|GLGA_ECOLI -            477   0.00051   19.8   0.0   1   1   4.7e-07    0.0014   18.3   0.0    79   156   127   221   109   251 0.73 Glycosyltransferase Family 4
CBM_48               PF02922.13    85 sp|P07762|GLGB_ECOLI -            728   1.6e-29  101.7   0.0   2   2   6.2e-30   2.3e-26   91.6   0.0     2    85   125   207   124   207 0.94 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Alpha-amylase_C      PF02806.13    96 sp|P07762|GLGB_ECOLI -            728   2.2e-22   78.9   0.0   1   1   1.2e-25   4.4e-22   78.0   0.0     1    92   628   724   628   728 0.94 Alpha amylase, C-terminal all-beta domain
Alpha-amylase        PF00128.19   316 sp|P07762|GLGB_ECOLI -            728   1.2e-14   54.4   0.0   1   2   4.8e-15   1.8e-11   44.0   0.0    10    81   273   345   267   355 0.92 Alpha amylase, catalytic domain
Glyco_hydro_70       PF02324.11   809 sp|P07762|GLGB_ECOLI -            728     0.057   11.1   0.0   1   1   2.3e-05     0.086   10.5   0.0   641   670   310   339   304   349 0.90 Glycosyl hydrolase family 70
NTP_transferase      PF00483.18   248 sp|P0A6V1|GLGC_ECOLI -            431   2.3e-70  236.7   0.0   1   1   3.7e-74   2.7e-70  236.4   0.0     2   246    22   291    21   293 0.97 Nucleotidyl transferase
NTP_transf_3         PF12804.2    160 sp|P0A6V1|GLGC_ECOLI -            431   2.2e-07   31.0   0.0   1   1   4.9e-11   3.6e-07   30.3   0.0     1   121    22   166    22   228 0.78 MobA-like NTP transferase domain
GlgS                 PF08971.6     66 sp|P26649|GLGS_ECOLI -             66   9.7e-42  140.7   0.7   1   1   7.1e-46   1.1e-41  140.6   0.7     1    66     1    66     1    66 0.99 Glycogen synthesis protein
CBM_48               PF02922.13    85 sp|P15067|GLGX_ECOLI -            657   4.1e-21   74.8   0.0   1   1   2.2e-24   8.1e-21   73.8   0.0     1    85    11    97    11    97 0.89 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Alpha-amylase        PF00128.19   316 sp|P15067|GLGX_ECOLI -            657   2.3e-19   69.9   0.0   1   1   5.4e-20     2e-16   60.3   0.0    10   312   185   522   183   527 0.71 Alpha amylase, catalytic domain
Glyco_hydro_70       PF02324.11   809 sp|P15067|GLGX_ECOLI -            657     0.077   10.7   0.0   1   1   2.8e-05      0.11   10.3   0.0   645   670   240   265   185   271 0.84 Glycosyl hydrolase family 70
Glyco_hydro_31       PF01055.21   441 sp|P15067|GLGX_ECOLI -            657     0.082   11.7   0.0   1   1   3.2e-05      0.12   11.2   0.0    83   179   242   338   217   522 0.78 Glycosyl hydrolases family 31
Glucokinase          PF02685.11   316 sp|P0A6V8|GLK_ECOLI  -            321  4.9e-124  413.2   0.0   1   1  1.1e-127  5.6e-124  413.0   0.0     1   315     6   315     6   316 0.99 Glucokinase
PaaX_C               PF08223.6    172 sp|P0A6V8|GLK_ECOLI  -            321      0.13   11.9   0.0   1   1   3.9e-05      0.19   11.4   0.0   130   169   195   234   184   236 0.92 PaaX-like protein C-terminal domain
TRA-1_regulated      PF02343.11   131 sp|P0A6V8|GLK_ECOLI  -            321      0.15   11.5   0.0   1   1   4.6e-05      0.23   10.9   0.0    15    69    43   101    30   115 0.77 TRA-1 regulated protein R03H10.4
PGM_PMM_I            PF02878.11   138 sp|P31120|GLMM_ECOLI -            445   2.8e-45  153.2   0.0   1   1   2.5e-48   6.1e-45  152.0   0.0     1   134     4   136     4   139 0.98 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
PGM_PMM_III          PF02880.11   113 sp|P31120|GLMM_ECOLI -            445   1.5e-31  108.7   0.2   1   1   1.4e-34   3.4e-31  107.5   0.1     1   111   258   367   258   369 0.93 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
PGM_PMM_II           PF02879.11   104 sp|P31120|GLMM_ECOLI -            445   4.2e-21   75.2   0.1   1   1   3.7e-24   9.3e-21   74.1   0.1     2   104   157   254   156   254 0.91 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
PGM_PMM_IV           PF00408.15    73 sp|P31120|GLMM_ECOLI -            445   1.1e-15   57.4   0.3   1   1   1.8e-18   4.4e-15   55.4   0.3     1    73   373   443   373   443 0.96 Phosphoglucomutase/phosphomannomutase, C-terminal domain
Cas_GSU0053          PF09617.5    169 sp|P31120|GLMM_ECOLI -            445    0.0063   16.3   0.0   1   1   6.2e-06     0.015   15.0   0.0    35    95   377   442   367   443 0.80 CRISPR-associated protein GSU0053 (Cas_GSU0053)
Glyoxalase_2         PF12681.2    108 sp|P31120|GLMM_ECOLI -            445     0.059   13.9   0.1   2   2   0.00016      0.39   11.3   0.0    54   105   207   257   175   258 0.86 Glyoxalase-like domain
Hexapep              PF00132.19    36 sp|P0ACC7|GLMU_ECOLI -            456   4.1e-30  101.9  14.0   1   5   2.2e-09   4.7e-06   25.8   3.6     4    36   268   300   266   300 0.94 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0ACC7|GLMU_ECOLI -            456   4.1e-30  101.9  14.0   2   5   5.6e-05      0.12   11.9   0.1    17    35   298   316   297   317 0.81 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0ACC7|GLMU_ECOLI -            456   4.1e-30  101.9  14.0   3   5     1e-05     0.022   14.2   0.0     6    34   322   350   317   352 0.88 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0ACC7|GLMU_ECOLI -            456   4.1e-30  101.9  14.0   4   5   7.4e-08   0.00016   21.0   0.1     2    32   353   382   352   384 0.94 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0ACC7|GLMU_ECOLI -            456   4.1e-30  101.9  14.0   5   5   4.9e-12     1e-08   34.2   0.3     2    36   395   429   394   429 0.96 Bacterial transferase hexapeptide (six repeats)
NTP_transf_3         PF12804.2    160 sp|P0ACC7|GLMU_ECOLI -            456   1.1e-20   74.3   0.7   1   1   1.2e-23   2.6e-20   73.1   0.2     1   112     8   122     8   147 0.92 MobA-like NTP transferase domain
NTP_transferase      PF00483.18   248 sp|P0ACC7|GLMU_ECOLI -            456   1.3e-13   50.8   0.0   1   1   9.1e-17   1.9e-13   50.2   0.0     3   220     9   214     7   220 0.85 Nucleotidyl transferase
Hexapep_2            PF14602.1     34 sp|P0ACC7|GLMU_ECOLI -            456     3e-10   39.4  17.6   1   5   8.7e-05      0.18   11.3   2.4     7    29   277   301   269   303 0.61 Hexapeptide repeat of succinyl-transferase
Hexapep_2            PF14602.1     34 sp|P0ACC7|GLMU_ECOLI -            456     3e-10   39.4  17.6   5   5   1.5e-09   3.2e-06   26.5   0.1     2    34   395   429   394   429 0.92 Hexapeptide repeat of succinyl-transferase
IspD                 PF01128.14   221 sp|P0ACC7|GLMU_ECOLI -            456   1.5e-06   27.8   0.1   1   1   1.5e-09   3.1e-06   26.8   0.1     1    45     6    50     6    78 0.83 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
CofC                 PF01983.11   217 sp|P0ACC7|GLMU_ECOLI -            456    0.0011   17.9   0.0   1   1     1e-06    0.0021   17.0   0.0    31   112    33   120    13   126 0.83 Guanylyl transferase CofC like
CTP_transf_3         PF02348.14   217 sp|P0ACC7|GLMU_ECOLI -            456     0.017   14.7   0.0   1   2   0.00016      0.34   10.4   0.0    16    39    25    48    10    55 0.92 Cytidylyltransferase
Gln-synt_C           PF00120.19   259 sp|P0A9C5|GLNA_ECOLI -            469  2.3e-106  354.7   0.0   1   1    4e-110  2.9e-106  354.3   0.0     2   259   103   379   102   379 0.98 Glutamine synthetase, catalytic domain
Gln-synt_N           PF03951.14    84 sp|P0A9C5|GLNA_ECOLI -            469   2.3e-31  107.1   0.1   1   1   6.2e-35   4.6e-31  106.2   0.1     1    84    14    95    14    95 0.98 Glutamine synthetase, beta-Grasp domain
P-II                 PF00543.17   102 sp|P0A9Z1|GLNB_ECOLI -            112   1.4e-43  147.5   2.6   1   1   3.1e-47   1.5e-43  147.3   2.6     1   102     4   105     4   105 0.99 Nitrogen regulatory protein P-II
DUF3240              PF11582.3    102 sp|P0A9Z1|GLNB_ECOLI -            112     0.016   15.1   0.0   1   1   4.9e-06     0.024   14.5   0.0    17    84    14    82     6    87 0.80 Protein of unknown function (DUF3240)
Nit_Regul_Hom        PF10126.4    110 sp|P0A9Z1|GLNB_ECOLI -            112     0.064   13.0   0.1   1   1   1.5e-05     0.072   12.8   0.1    11    61     8    57     1   103 0.69 Uncharacterized protein, homolog of nitrogen regulatory protein PII
GlnD_UR_UTase        PF08335.6    142 sp|P27249|GLND_ECOLI -            890   8.4e-40  135.8   0.3   1   1     4e-43   8.4e-40  135.8   0.3     1   142   192   331   192   331 0.98 GlnD PII-uridylyltransferase
ACT                  PF01842.20    66 sp|P27249|GLND_ECOLI -            890   3.5e-20   71.0   0.2   1   2   8.2e-12   1.7e-08   33.7   0.0     1    55   708   763   708   766 0.92 ACT domain
ACT                  PF01842.20    66 sp|P27249|GLND_ECOLI -            890   3.5e-20   71.0   0.2   2   2   3.8e-12     8e-09   34.8   0.2     3    63   817   874   815   877 0.82 ACT domain
HD                   PF01966.17   122 sp|P27249|GLND_ECOLI -            890   4.4e-15   55.7   0.2   1   1   6.2e-18   1.3e-14   54.2   0.1     1   121   468   601   468   602 0.93 HD domain
NTP_transf_2         PF01909.18    93 sp|P27249|GLND_ECOLI -            890   6.9e-11   42.3   0.0   1   1   8.3e-14   1.7e-10   41.0   0.0    10    92    77   168    68   169 0.84 Nucleotidyltransferase domain
DUF294               PF03445.8    138 sp|P27249|GLND_ECOLI -            890   2.2e-06   27.3   0.0   1   1   4.8e-09     1e-05   25.1   0.0     3    89    43   126    41   139 0.87 Putative nucleotidyltransferase DUF294
Metal_resist         PF13801.1    125 sp|P27249|GLND_ECOLI -            890     0.015   15.2   4.2   1   2   1.7e-05     0.036   14.0   0.5    52    97   623   668   616   671 0.90 Heavy-metal resistance
GlnE                 PF03710.10   248 sp|P30870|GLNE_ECOLI -            946  2.6e-189  626.2   3.5   1   3   5.7e-95   4.2e-91  304.6   0.0     4   247    32   276    29   277 0.98 Glutamate-ammonia ligase adenylyltransferase
GlnE                 PF03710.10   248 sp|P30870|GLNE_ECOLI -            946  2.6e-189  626.2   3.5   2   3  3.6e-100   2.7e-96  321.6   0.3     2   246   553   804   552   806 0.98 Glutamate-ammonia ligase adenylyltransferase
GlnD_UR_UTase        PF08335.6    142 sp|P30870|GLNE_ECOLI -            946   2.6e-52  176.4   6.9   1   2   1.8e-44   1.4e-40  138.4   0.6     1   142   297   436   297   436 0.99 GlnD PII-uridylyltransferase
GlnD_UR_UTase        PF08335.6    142 sp|P30870|GLNE_ECOLI -            946   2.6e-52  176.4   6.9   2   2   3.5e-14   2.6e-10   40.3   0.9     1    91   825   916   822   921 0.92 GlnD PII-uridylyltransferase
SBP_bac_3            PF00497.15   225 sp|P0AEQ3|GLNH_ECOLI -            248   3.3e-71  239.1   2.2   1   1     1e-74   3.8e-71  238.9   2.2     1   224    27   244    27   245 0.97 Bacterial extracellular solute-binding proteins, family 3
NMT1                 PF09084.6    216 sp|P0AEQ3|GLNH_ECOLI -            248    0.0003   20.4   0.8   1   1   8.1e-07     0.003   17.1   0.8    69   145   107   177    64   212 0.70 NMT1/THI5 like
Phosphonate-bd       PF12974.2    243 sp|P0AEQ3|GLNH_ECOLI -            248   0.00031   20.2   0.1   1   1   1.9e-06     0.007   15.7   0.1    21   220    55   232    51   246 0.71 ABC transporter, phosphonate, periplasmic substrate-binding protein
Lig_chan-Glu_bd      PF10613.4     65 sp|P0AEQ3|GLNH_ECOLI -            248    0.0054   16.6   0.0   1   1   4.6e-06     0.017   15.0   0.0    12    40    40    68    30    71 0.91 Ligated ion channel L-glutamate- and glycine-binding site
P-II                 PF00543.17   102 sp|P0AC55|GLNK_ECOLI -            112   2.6e-40  136.9   1.0   1   1     4e-44     3e-40  136.8   1.0     1   102     4   105     4   105 0.99 Nitrogen regulatory protein P-II
DUF3240              PF11582.3    102 sp|P0AC55|GLNK_ECOLI -            112     0.065   13.1   0.0   1   1   1.4e-05      0.11   12.4   0.0    17    84    14    82     2    87 0.75 Protein of unknown function (DUF3240)
BPD_transp_1         PF00528.17   185 sp|P0AEQ6|GLNP_ECOLI -            219   7.8e-26   90.7  16.2   1   1   1.5e-29   1.1e-25   90.2  16.2     1   184    33   217    33   218 0.95 Binding-protein-dependent transport system inner membrane component
Lig_chan             PF00060.21   148 sp|P0AEQ6|GLNP_ECOLI -            219      0.54    9.9   2.9   1   1   3.4e-05      0.25   11.0   0.5     2    30   188   216   187   218 0.89 Ligand-gated ion channel
ABC_tran             PF00005.22   137 sp|P10346|GLNQ_ECOLI -            240   6.7e-37  126.8   0.0   1   1   2.7e-39   9.4e-37  126.3   0.0     1   137    17   165    17   165 0.89 ABC transporter
AAA_21               PF13304.1    303 sp|P10346|GLNQ_ECOLI -            240   4.1e-15   56.5   0.0   1   2     8e-08   2.8e-05   24.2   0.0     2    50    30    76    29    90 0.83 AAA domain
AAA_21               PF13304.1    303 sp|P10346|GLNQ_ECOLI -            240   4.1e-15   56.5   0.0   2   2   1.1e-09     4e-07   30.3   0.0   234   298   134   195   130   198 0.95 AAA domain
SMC_N                PF02463.14   220 sp|P10346|GLNQ_ECOLI -            240   1.3e-08   34.3   0.3   1   1   8.6e-09     3e-06   26.6   0.3    24   208    27   206    14   215 0.67 RecF/RecN/SMC N terminal domain
AAA_15               PF13175.1    415 sp|P10346|GLNQ_ECOLI -            240   1.9e-06   27.1   0.1   1   2   5.4e-05     0.019   14.0   0.1    17    45    19    50     3    72 0.70 AAA ATPase domain
AAA_15               PF13175.1    415 sp|P10346|GLNQ_ECOLI -            240   1.9e-06   27.1   0.1   2   2   0.00035      0.12   11.3   0.0   372   411   157   195   129   199 0.88 AAA ATPase domain
AAA_22               PF13401.1    131 sp|P10346|GLNQ_ECOLI -            240   7.6e-06   26.0   0.1   1   1   1.3e-07   4.4e-05   23.6   0.1     4   122    27   192    23   202 0.77 AAA domain
AAA_16               PF13191.1    185 sp|P10346|GLNQ_ECOLI -            240   1.1e-05   25.4   0.4   1   1   7.7e-08   2.6e-05   24.2   0.4    21    71    24    91    14   210 0.58 AAA ATPase domain
AAA_10               PF12846.2    304 sp|P10346|GLNQ_ECOLI -            240   1.6e-05   24.5   0.1   1   2   2.9e-06     0.001   18.6   0.0     4    30    30    60    27    86 0.73 AAA-like domain
AAA_29               PF13555.1     62 sp|P10346|GLNQ_ECOLI -            240   2.2e-05   23.8   0.0   1   1   1.2e-07   4.1e-05   23.0   0.0    17    40    22    44    15    50 0.78 P-loop containing region of AAA domain
AAA_23               PF13476.1    202 sp|P10346|GLNQ_ECOLI -            240     3e-05   24.4   0.1   1   1   1.5e-07   5.2e-05   23.6   0.1     9    39     9    47     2    49 0.72 AAA domain
ABC_ATPase           PF09818.4    448 sp|P10346|GLNQ_ECOLI -            240     3e-05   22.7   0.1   1   2   0.00023     0.078   11.5   0.0   240   265    22    48    18    50 0.92 Predicted ATPase of the ABC class
ABC_ATPase           PF09818.4    448 sp|P10346|GLNQ_ECOLI -            240     3e-05   22.7   0.1   2   2    0.0015      0.52    8.8   0.0   324   354   138   168   128   216 0.85 Predicted ATPase of the ABC class
DUF258               PF03193.11   161 sp|P10346|GLNQ_ECOLI -            240   0.00014   21.0   0.0   1   1   6.9e-07   0.00024   20.3   0.0    25    61    16    53     2    73 0.80 Protein of unknown function, DUF258
AAA_17               PF13207.1    121 sp|P10346|GLNQ_ECOLI -            240   0.00036   21.3   0.4   1   1   1.7e-06   0.00058   20.6   0.4     1    40    29    64    29   216 0.86 AAA domain
AAA_13               PF13166.1    712 sp|P10346|GLNQ_ECOLI -            240   0.00037   19.1   0.0   1   2    0.0012       0.4    9.0   0.0    17    96    28   115    17   144 0.65 AAA domain
AAA_13               PF13166.1    712 sp|P10346|GLNQ_ECOLI -            240   0.00037   19.1   0.0   2   2    0.0019      0.67    8.3   0.0   527   579   154   204   142   213 0.88 AAA domain
AAA_33               PF13671.1    143 sp|P10346|GLNQ_ECOLI -            240   0.00066   19.5   0.0   1   1     4e-06    0.0014   18.5   0.0     1    43    29    69    29   193 0.85 AAA domain
AAA_25               PF13481.1    194 sp|P10346|GLNQ_ECOLI -            240   0.00088   18.7   0.2   1   2   2.2e-05    0.0076   15.6   0.0    24    50    18    44     5    47 0.82 AAA domain
AAA_18               PF13238.1    129 sp|P10346|GLNQ_ECOLI -            240    0.0015   18.7   0.0   1   1   1.2e-05    0.0043   17.3   0.0     1    34    30    67    30    88 0.81 AAA domain
AAA_19               PF13245.1     76 sp|P10346|GLNQ_ECOLI -            240    0.0024   17.5   0.0   1   1   1.8e-05    0.0061   16.2   0.0     7    35    25    51    20    63 0.84 Part of AAA domain
RNA12                PF10443.4    431 sp|P10346|GLNQ_ECOLI -            240    0.0029   16.1   0.0   1   1   1.3e-05    0.0045   15.5   0.0    15    68    25    80    15    99 0.83 RNA12 protein
Arch_ATPase          PF01637.13   234 sp|P10346|GLNQ_ECOLI -            240    0.0039   16.9   0.1   1   1   2.6e-05     0.009   15.7   0.1    20    46    27    52    17   205 0.85 Archaeal ATPase
AAA_14               PF13173.1    128 sp|P10346|GLNQ_ECOLI -            240     0.005   16.7   0.0   1   1   5.4e-05     0.019   14.8   0.0     2    39    27    60    26    89 0.63 AAA domain
SbcCD_C              PF13558.1     90 sp|P10346|GLNQ_ECOLI -            240    0.0059   16.4   0.1   1   1    0.0002     0.068   13.1   0.1    33    89   137   180   119   181 0.75 Putative exonuclease SbcCD, C subunit
NB-ARC               PF00931.17   287 sp|P10346|GLNQ_ECOLI -            240    0.0064   15.3   0.1   1   1   4.9e-05     0.017   14.0   0.0    17    46    25    54    14    61 0.82 NB-ARC domain
MobB                 PF03205.9    140 sp|P10346|GLNQ_ECOLI -            240    0.0073   16.0   0.2   1   1     5e-05     0.017   14.8   0.1     2    22    29    48    28    60 0.87 Molybdopterin guanine dinucleotide synthesis protein B
NACHT                PF05729.7    166 sp|P10346|GLNQ_ECOLI -            240     0.008   15.8   0.0   1   1   5.8e-05      0.02   14.5   0.0     2    20    29    47    28    63 0.90 NACHT domain
IstB_IS21            PF01695.12   178 sp|P10346|GLNQ_ECOLI -            240    0.0087   15.4   0.0   1   2   0.00072      0.25   10.7   0.0    44    63    24    43     8    50 0.85 IstB-like ATP binding protein
AAA_30               PF13604.1    196 sp|P10346|GLNQ_ECOLI -            240     0.012   15.2   0.0   1   1   8.5e-05     0.029   13.9   0.0    17    43    26    52    18    64 0.82 AAA domain
cobW                 PF02492.14   178 sp|P10346|GLNQ_ECOLI -            240     0.015   14.7   0.0   1   1    0.0001     0.035   13.5   0.0     2    50    29    78    28   122 0.76 CobW/HypB/UreG, nucleotide-binding domain
Mg_chelatase         PF01078.16   207 sp|P10346|GLNQ_ECOLI -            240     0.018   14.2   0.0   1   1   0.00015      0.05   12.7   0.0     8    45    13    50     6   106 0.76 Magnesium chelatase, subunit ChlI
T2SE                 PF00437.15   272 sp|P10346|GLNQ_ECOLI -            240     0.019   13.8   0.0   1   1   9.3e-05     0.032   13.1   0.0   119   148    18    47     6    69 0.78 Type II/IV secretion system protein
CobU                 PF02283.11   167 sp|P10346|GLNQ_ECOLI -            240     0.022   14.1   0.0   2   2    0.0021      0.72    9.2   0.0    74   126   144   198   115   212 0.76 Cobinamide kinase / cobinamide phosphate guanyltransferase
AAA_28               PF13521.1    163 sp|P10346|GLNQ_ECOLI -            240     0.034   14.0   0.0   1   1   0.00028     0.095   12.6   0.0     2    20    30    48    29    79 0.88 AAA domain
MMR_HSR1             PF01926.18   116 sp|P10346|GLNQ_ECOLI -            240     0.045   13.7   0.0   1   1   0.00029       0.1   12.5   0.0     2    20    30    48    29    73 0.86 50S ribosome-binding GTPase
FtsK_SpoIIIE         PF01580.13   205 sp|P10346|GLNQ_ECOLI -            240     0.052   13.0   0.0   1   1   0.00031      0.11   12.0   0.0    23    56    12    45     7    48 0.84 FtsK/SpoIIIE family
MutS_V               PF00488.16   235 sp|P10346|GLNQ_ECOLI -            240     0.057   12.8   0.0   1   1   0.00033      0.11   11.8   0.0    32    63    16    47     6    55 0.84 MutS domain V
Adeno_IVa2           PF02456.10   370 sp|P10346|GLNQ_ECOLI -            240      0.06   11.9   0.0   1   1   0.00026     0.091   11.3   0.0    85   109    25    49     5    57 0.77 Adenovirus IVa2 protein
DUF3987              PF13148.1    378 sp|P10346|GLNQ_ECOLI -            240     0.069   11.7   0.0   1   1   0.00033      0.12   10.9   0.0    42    66    30    53    29    56 0.91 Protein of unknown function (DUF3987)
Rad17                PF03215.10   519 sp|P10346|GLNQ_ECOLI -            240      0.07   11.7   0.0   1   1   0.00024     0.084   11.5   0.0    38    73    20    55     9   120 0.75 Rad17 cell cycle checkpoint protein
UPF0079              PF02367.12   123 sp|P10346|GLNQ_ECOLI -            240     0.073   12.6   0.0   1   1   0.00039      0.13   11.8   0.0    11    37    23    49    14    58 0.85 Uncharacterised P-loop hydrolase UPF0079
Sigma54_activat      PF00158.21   168 sp|P10346|GLNQ_ECOLI -            240     0.089   12.2   0.0   1   1   0.00077      0.27   10.7   0.0    10    54    15    59     8    79 0.77 Sigma-54 interaction domain
NTPase_1             PF03266.10   168 sp|P10346|GLNQ_ECOLI -            240     0.089   12.4   0.2   1   1   0.00099      0.34   10.6   0.0     2    38    30    68    29    79 0.78 NTPase
Miro                 PF08477.8    119 sp|P10346|GLNQ_ECOLI -            240       0.1   13.0   0.0   1   1   0.00051      0.18   12.3   0.0     2    25    30    53    29    84 0.84 Miro-like protein
CPT                  PF07931.7    174 sp|P10346|GLNQ_ECOLI -            240      0.13   11.8   0.0   1   1   0.00073      0.25   10.9   0.0     1    35    27    61    27    85 0.83 Chloramphenicol phosphotransferase-like protein
Lactamase_B          PF00753.22   194 sp|P0AC84|GLO2_ECOLI -            251   2.6e-34  118.5   0.4   1   1   6.9e-38   3.4e-34  118.2   0.4     3   194     9   165     7   165 0.96 Metallo-beta-lactamase superfamily
Lactamase_B_2        PF12706.2    194 sp|P0AC84|GLO2_ECOLI -            251   1.6e-08   34.3   0.0   1   1     5e-12   2.5e-08   33.7   0.0     3   188    25   199    23   204 0.60 Beta-lactamase superfamily domain
Lactamase_B_3        PF13483.1    163 sp|P0AC84|GLO2_ECOLI -            251    0.0083   15.8   0.0   1   1   2.5e-06     0.012   15.2   0.0    10    82    15   108    12   146 0.73 Beta-lactamase superfamily domain
DAO                  PF01266.19   358 sp|P0A9C0|GLPA_ECOLI -            542   9.6e-57  192.4   2.9   1   1   1.3e-59   1.5e-56  191.8   2.9     1   345    10   344    10   367 0.87 FAD dependent oxidoreductase
FAD_binding_2        PF00890.19   417 sp|P0A9C0|GLPA_ECOLI -            542   8.9e-10   37.9   2.8   1   2   5.9e-07   0.00068   18.5   0.7     1    45    10    54    10    87 0.92 FAD binding domain
FAD_binding_2        PF00890.19   417 sp|P0A9C0|GLPA_ECOLI -            542   8.9e-10   37.9   2.8   2   2   2.9e-07   0.00033   19.6   0.1   144   208   154   217    98   233 0.87 FAD binding domain
FAD_binding_3        PF01494.14   356 sp|P0A9C0|GLPA_ECOLI -            542   1.5e-06   27.5   3.7   1   1   1.4e-08   1.6e-05   24.1   3.9     2   173     9   214     8   225 0.85 FAD binding domain
Fer2_BFD             PF04324.10    55 sp|P0A9C0|GLPA_ECOLI -            542   2.4e-06   27.4   2.4   1   1   2.1e-09   2.4e-06   27.4   2.4     2    45   432   480   431   486 0.87 BFD-like [2Fe-2S] binding domain
FAD_oxidored         PF12831.2    428 sp|P0A9C0|GLPA_ECOLI -            542   1.6e-05   24.1   7.0   1   1   1.1e-07   0.00013   21.2   7.0     1   147    10   210    10   217 0.73 FAD dependent oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|P0A9C0|GLPA_ECOLI -            542   0.00022   21.1   2.0   1   1   2.3e-06    0.0027   17.6   2.0     1    46    10    59    10   236 0.65 Pyridine nucleotide-disulphide oxidoreductase
3HCDH_N              PF02737.13   180 sp|P0A9C0|GLPA_ECOLI -            542   0.00026   20.6   0.2   1   1     5e-07   0.00057   19.5   0.2     2    49    11    57    10    87 0.68 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Thi4                 PF01946.12   230 sp|P0A9C0|GLPA_ECOLI -            542   0.00043   19.4   0.6   1   2   4.2e-06    0.0048   16.0   0.1    16    54     7    46     2    77 0.84 Thi4 family
NAD_binding_8        PF13450.1     68 sp|P0A9C0|GLPA_ECOLI -            542    0.0038   17.2   1.7   1   1   7.5e-06    0.0086   16.0   1.7     1    51    13    60    13    74 0.82 NAD(P)-binding Rossmann-like domain
HI0933_like          PF03486.9    409 sp|P0A9C0|GLPA_ECOLI -            542    0.0077   14.7   0.7   1   1   1.2e-05     0.013   13.9   0.7     2    32    10    40     9    58 0.94 HI0933-like protein
Lycopene_cycl        PF05834.7    374 sp|P0A9C0|GLPA_ECOLI -            542      0.06   12.2   0.6   1   1   9.2e-05      0.11   11.4   0.6     1    34    10    41    10    51 0.90 Lycopene cyclase protein
GIDA                 PF01134.17   392 sp|P0A9C0|GLPA_ECOLI -            542      0.17   10.7   2.4   1   2   0.00049      0.56    8.9   1.5     1    30    10    40    10    61 0.87 Glucose inhibited division protein A
FAD_binding_2        PF00890.19   417 sp|P13033|GLPB_ECOLI -            419   3.8e-60  203.8   0.0   1   1   2.6e-63   4.3e-60  203.7   0.0     1   417     4   399     4   399 0.96 FAD binding domain
DAO                  PF01266.19   358 sp|P13033|GLPB_ECOLI -            419   5.1e-08   32.2   0.2   1   2     1e-08   1.7e-05   23.9   0.1     1    70     4    97     4   172 0.76 FAD dependent oxidoreductase
FAD_binding_3        PF01494.14   356 sp|P13033|GLPB_ECOLI -            419   0.00072   18.7   0.2   1   1   6.8e-07    0.0011   18.0   0.2     2    37     3    38     2    45 0.89 FAD binding domain
Pyr_redox_2          PF07992.9    201 sp|P13033|GLPB_ECOLI -            419     0.004   17.0   0.0   1   2   3.9e-05     0.064   13.1   0.0     1    31     4    34     4    71 0.88 Pyridine nucleotide-disulphide oxidoreductase
GIDA                 PF01134.17   392 sp|P13033|GLPB_ECOLI -            419    0.0085   14.9   0.8   1   3   0.00025       0.4    9.4   0.1     2    30     5    33     4    46 0.87 Glucose inhibited division protein A
NAD_binding_8        PF13450.1     68 sp|P13033|GLPB_ECOLI -            419     0.016   15.2   0.7   1   1   9.8e-06     0.016   15.2   0.7     1    26     7    32     7    43 0.89 NAD(P)-binding Rossmann-like domain
HI0933_like          PF03486.9    409 sp|P13033|GLPB_ECOLI -            419     0.019   13.4   0.1   1   1   2.3e-05     0.038   12.4   0.1     2    34     4    36     3    39 0.90 HI0933-like protein
Lycopene_cycl        PF05834.7    374 sp|P13033|GLPB_ECOLI -            419     0.031   13.2   0.0   1   2   5.3e-05     0.087   11.7   0.1     1    35     4    36     4    42 0.87 Lycopene cyclase protein
Thi4                 PF01946.12   230 sp|P13033|GLPB_ECOLI -            419      0.19   10.7   0.0   1   1   0.00021      0.34    9.9   0.0    18    48     3    33     1    42 0.91 Thi4 family
DAO                  PF01266.19   358 sp|P13035|GLPD_ECOLI -            501   1.9e-44  152.0   0.1   1   1   2.9e-47   4.8e-44  150.7   0.1     1   357     5   358     5   359 0.83 FAD dependent oxidoreductase
FAD_oxidored         PF12831.2    428 sp|P13035|GLPD_ECOLI -            501   3.2e-06   26.5   0.2   1   2   1.1e-05     0.018   14.1   0.4     1    33     5    37     5    71 0.90 FAD dependent oxidoreductase
FAD_oxidored         PF12831.2    428 sp|P13035|GLPD_ECOLI -            501   3.2e-06   26.5   0.2   2   2   0.00019      0.32   10.0   0.0    87   147   146   207   106   208 0.87 FAD dependent oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|P13035|GLPD_ECOLI -            501   7.8e-05   22.6   0.0   1   2   6.7e-06     0.011   15.6   0.0     1    36     5    40     5    90 0.77 Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8        PF13450.1     68 sp|P13035|GLPD_ECOLI -            501    0.0027   17.6   0.6   1   1   6.9e-06     0.011   15.6   0.8     1    32     8    39     8    67 0.82 NAD(P)-binding Rossmann-like domain
3HCDH_N              PF02737.13   180 sp|P13035|GLPD_ECOLI -            501      0.01   15.5   0.1   1   1     1e-05     0.017   14.8   0.1     3    39     7    43     5    71 0.86 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
FAD_binding_2        PF00890.19   417 sp|P13035|GLPD_ECOLI -            501     0.043   12.6   4.7   1   2   0.00027      0.44    9.3   4.1     1    38     5    42     5    53 0.84 FAD binding domain
Lycopene_cycl        PF05834.7    374 sp|P13035|GLPD_ECOLI -            501     0.074   11.9   1.8   1   1   7.7e-05      0.13   11.1   1.8     1    35     5    37     5    44 0.92 Lycopene cyclase protein
GIDA                 PF01134.17   392 sp|P13035|GLPD_ECOLI -            501      0.25   10.1   2.4   1   1   0.00024      0.39    9.5   2.4     1    34     5    38     5    52 0.82 Glucose inhibited division protein A
Rhodanese            PF00581.15   113 sp|P0A6V5|GLPE_ECOLI -            108   1.2e-15   57.7   0.0   1   1   9.7e-20   1.4e-15   57.5   0.0     4   112    11    98     8    99 0.93 Rhodanese-like domain
MIP                  PF00230.15   227 sp|P0AER0|GLPF_ECOLI -            281   1.9e-76  256.4  12.9   1   1     3e-80   2.2e-76  256.2  12.9     2   227     2   251     1   251 0.97 Major intrinsic protein
DUF3816              PF12822.2    172 sp|P0AER0|GLPF_ECOLI -            281       4.6    7.1  27.0   2   3   0.00013      0.95    9.3   5.4     2    49   152   201   151   208 0.86 Protein of unknown function (DUF3816)
DUF3582              PF12122.3    101 sp|P09391|GLPG_ECOLI -            276   3.9e-33  113.4   0.0   1   1   2.1e-36   7.7e-33  112.5   0.0     1   101     1    99     1    99 0.97 Protein of unknown function (DUF3582)
Rhomboid             PF01694.17   146 sp|P09391|GLPG_ECOLI -            276   3.5e-27   95.2  14.7   1   1   9.4e-31   3.5e-27   95.2  14.7     3   142   131   269   129   273 0.88 Rhomboid family
DER1                 PF04511.10   197 sp|P09391|GLPG_ECOLI -            276      0.34   10.3   5.8   1   1   0.00012      0.45    9.9   5.7     3    76    95   168    93   232 0.69 Der1-like family
FGGY_N               PF00370.16   245 sp|P0A6F3|GLPK_ECOLI -            502   6.9e-93  310.4   0.2   1   1   1.3e-96   9.7e-93  309.9   0.2     1   245     6   253     6   253 0.99 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C               PF02782.11   198 sp|P0A6F3|GLPK_ECOLI -            502   3.4e-63  212.8   0.5   2   2   1.3e-66   9.8e-63  211.3   1.0     1   198   262   452   262   452 0.97 FGGY family of carbohydrate kinases, C-terminal domain
GDPD                 PF03009.12   256 sp|P09394|GLPQ_ECOLI -            358   3.4e-76  256.1   0.1   1   1   2.6e-80   3.9e-76  255.9   0.1     1   256    36   350    36   350 0.99 Glycerophosphoryl diester phosphodiesterase family
FBPase_glpX          PF03320.8    309 sp|P21437|GLPX2_ECOLI -            321  1.5e-124  414.6   1.0   1   1  1.1e-128  1.7e-124  414.5   1.0     3   309     3   321     1   321 0.99 Bacterial fructose-1,6-bisphosphatase, glpX-encoded
MFS_1                PF07690.11   352 sp|P08194|GLPT_ECOLI -            452     1e-46  159.3  35.0   1   2   8.6e-49   1.3e-44  152.4  28.7     1   352    34   400    34   400 0.85 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P08194|GLPT_ECOLI -            452     1e-46  159.3  35.0   2   2   1.4e-06     0.021   13.5   0.7   133   181   396   444   396   451 0.83 Major Facilitator Superfamily
FBPase_glpX          PF03320.8    309 sp|P0A9C9|GLPX_ECOLI -            336  5.9e-135  448.8   7.6   1   1  4.6e-139  6.8e-135  448.6   7.6     2   309     3   322     2   322 0.99 Bacterial fructose-1,6-bisphosphatase, glpX-encoded
Glutaredoxin         PF00462.19    60 sp|P68688|GLRX1_ECOLI -             85   8.6e-15   54.4   0.1   1   1     6e-18   1.1e-14   54.1   0.1     2    60     4    69     3    69 0.90 Glutaredoxin
DUF836               PF05768.9     81 sp|P68688|GLRX1_ECOLI -             85   1.4e-05   25.2   0.0   1   1   8.6e-09   1.6e-05   25.0   0.0     3    57     4    66     2    81 0.77 Glutaredoxin-like domain (DUF836)
Thioredoxin_3        PF13192.1     76 sp|P68688|GLRX1_ECOLI -             85   0.00015   21.4   0.0   1   1   1.1e-07   0.00021   21.0   0.0     6    58     6    67     1    80 0.82 Thioredoxin domain
SH3BGR               PF04908.10    99 sp|P68688|GLRX1_ECOLI -             85   0.00034   20.5   0.1   1   1   2.4e-07   0.00044   20.1   0.1    30    89    29    81    14    83 0.84 SH3-binding, glutamic acid-rich protein
Thioredoxin_2        PF13098.1    112 sp|P68688|GLRX1_ECOLI -             85    0.0011   19.1   0.1   1   1   1.3e-06    0.0025   18.0   0.1    10    88     4    64     2    81 0.64 Thioredoxin-like domain
DUF953               PF06110.6    119 sp|P68688|GLRX1_ECOLI -             85     0.035   13.5   0.0   1   1   2.4e-05     0.045   13.2   0.0    34    56     7    28     2    62 0.76 Eukaryotic protein of unknown function (DUF953)
HTH_15               PF12324.3     77 sp|P68688|GLRX1_ECOLI -             85      0.11   12.1   0.0   1   1   0.00011       0.2   11.3   0.0    38    64    42    68    39    72 0.87 Helix-turn-helix domain of alkylmercury lyase
HTH_3                PF01381.17    55 sp|P68688|GLRX1_ECOLI -             85      0.15   11.9   0.1   1   1   0.00019      0.35   10.7   0.0     7    32    40    65    37    71 0.83 Helix-turn-helix
Glutaredoxin2_C      PF04399.8    132 sp|P0AC59|GLRX2_ECOLI -            215   1.4e-50  170.2   0.0   1   1     6e-54   1.8e-50  169.9   0.0     1   132    84   215    84   215 0.99 Glutaredoxin 2, C terminal domain
GST_N_3              PF13417.1     75 sp|P0AC59|GLRX2_ECOLI -            215   2.1e-12   47.0   0.0   1   1   1.2e-15   3.7e-12   46.3   0.0     1    74     3    76     3    82 0.90 Glutathione S-transferase, N-terminal domain
GST_N_2              PF13409.1     70 sp|P0AC59|GLRX2_ECOLI -            215     1e-07   31.8   0.0   1   1   6.2e-11   1.8e-07   31.0   0.0     1    68     8    70     8    72 0.88 Glutathione S-transferase, N-terminal domain
GST_N                PF02798.15    76 sp|P0AC59|GLRX2_ECOLI -            215   7.2e-05   22.8   0.0   1   1   5.3e-08   0.00016   21.8   0.0     1    75     1    70     1    71 0.85 Glutathione S-transferase, N-terminal domain
Glutaredoxin         PF00462.19    60 sp|P0AC59|GLRX2_ECOLI -            215   0.00032   20.6   0.0   1   1   2.7e-07   0.00081   19.3   0.0     3    53     3    51     1    56 0.81 Glutaredoxin
Glutaredoxin         PF00462.19    60 sp|P0AC62|GLRX3_ECOLI -             83     1e-24   86.2   0.0   1   1   6.6e-28   1.2e-24   86.0   0.0     1    60     4    63     4    63 0.99 Glutaredoxin
GST_N_3              PF13417.1     75 sp|P0AC62|GLRX3_ECOLI -             83   6.4e-09   35.9   0.0   1   1   3.9e-12   7.3e-09   35.7   0.0     2    57     7    63     6    72 0.88 Glutathione S-transferase, N-terminal domain
GST_N_2              PF13409.1     70 sp|P0AC62|GLRX3_ECOLI -             83   1.4e-05   24.9   0.0   1   1   9.4e-09   1.7e-05   24.6   0.0     2    55    12    61    11    69 0.83 Glutathione S-transferase, N-terminal domain
DUF836               PF05768.9     81 sp|P0AC62|GLRX3_ECOLI -             83   0.00053   20.1   0.0   1   1   3.4e-07   0.00062   19.9   0.0     2    55     4    58     3    71 0.72 Glutaredoxin-like domain (DUF836)
SH3BGR               PF04908.10    99 sp|P0AC62|GLRX3_ECOLI -             83    0.0018   18.1   0.0   1   1   1.5e-06    0.0029   17.5   0.0    23    83    18    69     3    75 0.87 SH3-binding, glutamic acid-rich protein
Thioredoxin_3        PF13192.1     76 sp|P0AC62|GLRX3_ECOLI -             83    0.0062   16.3   0.0   1   1     5e-06    0.0093   15.7   0.0     2    56     3    59     2    65 0.85 Thioredoxin domain
Thioredoxin_2        PF13098.1    112 sp|P0AC62|GLRX3_ECOLI -             83     0.072   13.2   0.2   1   1   0.00011       0.2   11.8   0.2    12    60     7    46     3    66 0.69 Thioredoxin-like domain
Glutaredoxin         PF00462.19    60 sp|P0AC69|GLRX4_ECOLI -            115   3.1e-18   65.5   0.0   1   1   3.5e-22   5.1e-18   64.8   0.0     1    60    17    81    17    81 0.98 Glutaredoxin
Glutaminase          PF04960.10   286 sp|P77454|GLSA1_ECOLI -            310  1.1e-113  378.9   0.1   1   1  8.9e-118  1.3e-113  378.7   0.1     1   286    24   308    24   308 0.99 Glutaminase
Glutaminase          PF04960.10   286 sp|P0A6W0|GLSA2_ECOLI -            308  7.6e-127  422.1   0.1   1   1  5.8e-131  8.7e-127  422.0   0.1     1   286    24   308    24   308 1.00 Glutaminase
SBP_bac_3            PF00497.15   225 sp|P37902|GLTI_ECOLI -            302   3.3e-47  160.6   0.7   1   1   8.4e-51   4.1e-47  160.2   0.7     1   224    42   271    42   272 0.93 Bacterial extracellular solute-binding proteins, family 3
NMT1                 PF09084.6    216 sp|P37902|GLTI_ECOLI -            302   0.00042   19.9   0.4   2   2   4.7e-07    0.0023   17.5   0.1    20   141    85   199    81   218 0.82 NMT1/THI5 like
DUF3991              PF13154.1     77 sp|P37902|GLTI_ECOLI -            302     0.075   13.2   0.1   1   2   9.8e-05      0.48   10.6   0.0    12    46    31    66    29    68 0.90 Protein of unknown function (DUF3991)
BPD_transp_1         PF00528.17   185 sp|P0AER3|GLTJ_ECOLI -            246   3.9e-27   94.9   8.0   2   2   2.6e-31   3.9e-27   94.9   8.0     4   184    46   238    43   239 0.96 Binding-protein-dependent transport system inner membrane component
Glu_synthase         PF01645.12   368 sp|P09831|GLTB_ECOLI -           1486  1.3e-158  527.7   0.0   1   1  1.1e-161  2.6e-158  526.7   0.0     1   367   793  1156   793  1157 0.99 Conserved region in glutamate synthase
GATase_2             PF00310.16   361 sp|P09831|GLTB_ECOLI -           1486  3.2e-133  443.9   0.0   1   1  1.7e-136  4.2e-133  443.5   0.0     1   360    12   374    12   375 0.99 Glutamine amidotransferases class-II
Glu_syn_central      PF04898.9    288 sp|P09831|GLTB_ECOLI -           1486  2.2e-113  378.3   0.0   1   1  1.6e-116    4e-113  377.4   0.0     3   287   456   737   454   738 0.99 Glutamate synthase central domain
GXGXG                PF01493.14   202 sp|P09831|GLTB_ECOLI -           1486   5.4e-67  224.7   4.6   1   1   3.8e-70   9.5e-67  223.9   4.6     3   201  1235  1429  1233  1430 0.98 GXGXG motif
FMN_dh               PF01070.13   357 sp|P09831|GLTB_ECOLI -           1486   6.6e-05   21.9   0.7   1   2   9.7e-08   0.00024   20.0   0.3   277   317  1061  1101  1049  1104 0.85 FMN-dependent dehydrogenase
GATase_6             PF13522.1    133 sp|P09831|GLTB_ECOLI -           1486     0.014   15.3   0.0   1   1   2.3e-05     0.057   13.3   0.0    10    69   207   260   199   262 0.85 Glutamine amidotransferase domain
BPD_transp_1         PF00528.17   185 sp|P0AER5|GLTK_ECOLI -            224   1.3e-18   67.2  19.4   1   1   1.1e-22   1.7e-18   66.8  19.4     1   183    34   223    12   224 0.92 Binding-protein-dependent transport system inner membrane component
ABC_tran             PF00005.22   137 sp|P0AAG3|GLTL_ECOLI -            241   3.3e-34  118.1   0.0   1   1   1.3e-36   4.4e-34  117.7   0.0     1   137    17   165    17   165 0.92 ABC transporter
AAA_21               PF13304.1    303 sp|P0AAG3|GLTL_ECOLI -            241     4e-11   43.4   0.0   1   2   1.3e-05    0.0042   17.0   0.0     2    41    30    67    29    77 0.79 AAA domain
AAA_21               PF13304.1    303 sp|P0AAG3|GLTL_ECOLI -            241     4e-11   43.4   0.0   2   2     7e-08   2.3e-05   24.5   0.0   234   298   134   195    86   198 0.91 AAA domain
SMC_N                PF02463.14   220 sp|P0AAG3|GLTL_ECOLI -            241   1.8e-07   30.6   0.2   1   1   1.4e-09   4.5e-07   29.3   0.2    24   207    27   204    11   215 0.78 RecF/RecN/SMC N terminal domain
AAA_10               PF12846.2    304 sp|P0AAG3|GLTL_ECOLI -            241   5.8e-06   25.9   0.7   1   2   2.4e-06   0.00081   18.9   0.1     4    43    30    74    27    94 0.84 AAA-like domain
DUF258               PF03193.11   161 sp|P0AAG3|GLTL_ECOLI -            241   4.5e-05   22.6   0.1   1   1   2.3e-07   7.6e-05   21.9   0.1    30    67    21    59     7    69 0.84 Protein of unknown function, DUF258
AAA_29               PF13555.1     62 sp|P0AAG3|GLTL_ECOLI -            241   9.7e-05   21.8   0.1   1   1   5.3e-07   0.00017   21.0   0.1    19    40    24    44     6    50 0.76 P-loop containing region of AAA domain
AAA_22               PF13401.1    131 sp|P0AAG3|GLTL_ECOLI -            241   0.00014   22.0   0.2   1   1     2e-06   0.00067   19.8   0.3     3    28    26    51    23   201 0.79 AAA domain
AAA_33               PF13671.1    143 sp|P0AAG3|GLTL_ECOLI -            241   0.00016   21.5   0.2   1   1   7.1e-07   0.00024   21.0   0.2     1    19    29    47    29   130 0.85 AAA domain
Miro                 PF08477.8    119 sp|P0AAG3|GLTL_ECOLI -            241    0.0015   19.0   0.1   1   1   8.8e-06    0.0029   18.0   0.1     2    46    30    71    29    91 0.79 Miro-like protein
Rad17                PF03215.10   519 sp|P0AAG3|GLTL_ECOLI -            241    0.0025   16.5   0.0   1   1   8.1e-06    0.0027   16.4   0.0    39   141    21   124     4   173 0.62 Rad17 cell cycle checkpoint protein
AAA_25               PF13481.1    194 sp|P0AAG3|GLTL_ECOLI -            241    0.0031   16.9   0.8   1   2   0.00054      0.18   11.1   0.2    32    50    26    44    22    47 0.90 AAA domain
NTPase_1             PF03266.10   168 sp|P0AAG3|GLTL_ECOLI -            241    0.0034   17.0   0.3   1   1     2e-05    0.0066   16.1   0.3     2    39    30    69    29    84 0.84 NTPase
DLIC                 PF05783.6    472 sp|P0AAG3|GLTL_ECOLI -            241    0.0037   15.9   0.1   1   1   1.7e-05    0.0055   15.4   0.1    13    55    15    57     9    81 0.87 Dynein light intermediate chain (DLIC)
MobB                 PF03205.9    140 sp|P0AAG3|GLTL_ECOLI -            241    0.0046   16.6   0.2   1   1   2.8e-05    0.0091   15.7   0.2     2    20    29    47    28    60 0.92 Molybdopterin guanine dinucleotide synthesis protein B
AAA_17               PF13207.1    121 sp|P0AAG3|GLTL_ECOLI -            241     0.005   17.6   2.7   1   1     2e-05    0.0067   17.2   1.3     1    17    29    45    29   123 0.93 AAA domain
AAA_15               PF13175.1    415 sp|P0AAG3|GLTL_ECOLI -            241    0.0072   15.4   0.0   2   2    0.0015      0.49    9.3   0.0   373   411   158   195   152   199 0.92 AAA ATPase domain
Arch_ATPase          PF01637.13   234 sp|P0AAG3|GLTL_ECOLI -            241    0.0079   15.9   0.4   1   1   7.5e-05     0.025   14.2   0.3    19    40    26    47    20   206 0.91 Archaeal ATPase
SbcCD_C              PF13558.1     90 sp|P0AAG3|GLTL_ECOLI -            241    0.0091   15.9   0.5   1   1    0.0008      0.26   11.2   0.3    51    89   148   180   118   181 0.75 Putative exonuclease SbcCD, C subunit
AAA_16               PF13191.1    185 sp|P0AAG3|GLTL_ECOLI -            241     0.011   15.7   2.1   1   1   8.1e-05     0.027   14.4   2.1    23    44    26    47    16   162 0.90 AAA ATPase domain
cobW                 PF02492.14   178 sp|P0AAG3|GLTL_ECOLI -            241     0.012   15.0   0.6   1   1    0.0001     0.034   13.5   0.2     2    38    29    69    28   151 0.74 CobW/HypB/UreG, nucleotide-binding domain
AAA_23               PF13476.1    202 sp|P0AAG3|GLTL_ECOLI -            241     0.014   15.7   0.0   1   1   7.3e-05     0.024   14.9   0.0     3    37     3    45     2    48 0.63 AAA domain
KaiC                 PF06745.8    227 sp|P0AAG3|GLTL_ECOLI -            241     0.015   14.3   0.1   1   1   7.2e-05     0.024   13.7   0.1    17    97    25   120    20   207 0.71 KaiC
T2SE                 PF00437.15   272 sp|P0AAG3|GLTL_ECOLI -            241      0.02   13.7   0.5   1   1   0.00024     0.078   11.8   0.2   124   148    23    47    15    69 0.84 Type II/IV secretion system protein
S4                   PF01479.20    48 sp|P0AAG3|GLTL_ECOLI -            241     0.022   14.1   0.4   1   1   0.00078      0.26   10.7   0.1    23    40    53    70    51    74 0.89 S4 domain
Zeta_toxin           PF06414.7    201 sp|P0AAG3|GLTL_ECOLI -            241     0.022   13.8   0.0   1   1   0.00011     0.037   13.1   0.0    12    38    23    49    14    62 0.77 Zeta toxin
AAA_13               PF13166.1    712 sp|P0AAG3|GLTL_ECOLI -            241     0.028   12.9   0.0   2   2    0.0011      0.38    9.1   0.0   532   580   159   205   151   224 0.91 AAA domain
AAA_18               PF13238.1    129 sp|P0AAG3|GLTL_ECOLI -            241     0.032   14.5   0.5   1   1   0.00016     0.052   13.8   0.5     1    19    30    48    30   226 0.88 AAA domain
AAA_30               PF13604.1    196 sp|P0AAG3|GLTL_ECOLI -            241     0.033   13.7   0.1   1   1   0.00024     0.078   12.5   0.0    16    41    25    50    20    85 0.82 AAA domain
AAA_19               PF13245.1     76 sp|P0AAG3|GLTL_ECOLI -            241      0.04   13.6   0.1   1   1   0.00031       0.1   12.3   0.1    10    34    27    50    19    85 0.83 Part of AAA domain
NB-ARC               PF00931.17   287 sp|P0AAG3|GLTL_ECOLI -            241     0.047   12.5   0.0   1   1    0.0002     0.067   12.0   0.0    17    41    25    49    14   112 0.88 NB-ARC domain
Dynamin_N            PF00350.18   168 sp|P0AAG3|GLTL_ECOLI -            241     0.049   13.4   0.0   1   1   0.00021     0.068   12.9   0.0     1    42    30    69    30   121 0.86 Dynamin family
UPF0079              PF02367.12   123 sp|P0AAG3|GLTL_ECOLI -            241     0.055   13.1   0.1   1   1    0.0003     0.098   12.2   0.1     9    35    21    47    15    60 0.84 Uncharacterised P-loop hydrolase UPF0079
Septin               PF00735.13   281 sp|P0AAG3|GLTL_ECOLI -            241     0.059   12.3   0.0   1   1   0.00034      0.11   11.4   0.0     7    27    30    50    27    86 0.81 Septin
RNA_helicase         PF00910.17   107 sp|P0AAG3|GLTL_ECOLI -            241     0.063   13.4   0.0   1   1    0.0005      0.16   12.1   0.0     1    17    30    46    30    73 0.81 RNA helicase
RNA12                PF10443.4    431 sp|P0AAG3|GLTL_ECOLI -            241     0.067   11.6   0.0   1   1   0.00027     0.089   11.2   0.0    18    64    28    76    19   119 0.68 RNA12 protein
DEAD                 PF00270.24   169 sp|P0AAG3|GLTL_ECOLI -            241     0.067   12.6   0.0   1   1   0.00031       0.1   12.1   0.0    11    92    24   206    15   234 0.81 DEAD/DEAH box helicase
PhoH                 PF02562.11   205 sp|P0AAG3|GLTL_ECOLI -            241     0.071   12.3   0.0   1   1   0.00042      0.14   11.3   0.0    15    49    23    58    17    82 0.81 PhoH-like protein
FtsK_SpoIIIE         PF01580.13   205 sp|P0AAG3|GLTL_ECOLI -            241     0.076   12.4   0.8   1   1   0.00038      0.12   11.7   0.1    33    57    22    46    12    47 0.86 FtsK/SpoIIIE family
AAA_14               PF13173.1    128 sp|P0AAG3|GLTL_ECOLI -            241     0.078   12.8   0.1   1   1   0.00055      0.18   11.7   0.0     2    22    27    47    26    78 0.85 AAA domain
Mg_chelatase         PF01078.16   207 sp|P0AAG3|GLTL_ECOLI -            241     0.094   11.8   0.1   1   1   0.00075      0.25   10.4   0.0    25    50    30    55    25    78 0.82 Magnesium chelatase, subunit ChlI
PRK                  PF00485.13   194 sp|P0AAG3|GLTL_ECOLI -            241      0.11   12.0   0.1   1   1   0.00063      0.21   11.1   0.1     1    21    29    49    29   111 0.71 Phosphoribulokinase / Uridine kinase family
AAA_24               PF13479.1    213 sp|P0AAG3|GLTL_ECOLI -            241      0.11   12.0   0.2   1   1   0.00067      0.22   11.0   0.2     6    23    30    47    25    53 0.87 AAA domain
GTP_EFTU_D2          PF03144.20    74 sp|P0AAG3|GLTL_ECOLI -            241      0.13   12.4   1.3   1   1   0.00085      0.28   11.3   0.9    12    45    23    57    20    84 0.77 Elongation factor Tu domain 2
IstB_IS21            PF01695.12   178 sp|P0AAG3|GLTL_ECOLI -            241      0.13   11.6   0.0   1   1   0.00074      0.24   10.7   0.0    44    64    24    44    15    67 0.83 IstB-like ATP binding protein
SDF                  PF00375.13   390 sp|P21345|GLTP_ECOLI -            437  1.1e-119  399.7  38.6   1   1  1.6e-123  1.2e-119  399.5  38.6     1   390     8   411     8   411 0.97 Sodium:dicarboxylate symporter family
Glt_symporter        PF03616.9    368 sp|P0AER8|GLTS_ECOLI -            401  3.8e-163  542.2  24.5   1   2  2.5e-167  3.8e-163  542.2  24.5     1   368     2   366     2   366 0.98 Sodium/glutamate symporter
tRNA-synt_1c         PF00749.16   314 sp|P27305|GLUQ_ECOLI -            308   2.4e-51  174.2   0.0   1   1   8.5e-55   1.3e-50  171.9   0.0     5   295    19   284    17   298 0.93 tRNA synthetases class I (E and Q), catalytic domain
Glyco_hydro_4        PF02056.11   183 sp|P31450|GLVG_ECOLI -            212   1.1e-73  246.4   0.0   1   1   8.7e-78   1.3e-73  246.2   0.0     1   182     5   184     5   185 0.99 Family 4 glycosyl hydrolase
Gly_kinase           PF02595.10   378 sp|P77364|GLXK2_ECOLI -            381  4.1e-184  611.5  19.9   1   1  3.2e-188  4.7e-184  611.4  19.9     1   377     1   377     1   378 1.00 Glycerate kinase family
Gly_kinase           PF02595.10   378 sp|P23524|GLXK1_ECOLI -            381  7.8e-190  630.4  14.3   1   1    6e-194  8.8e-190  630.2  14.3     1   377     1   377     1   378 1.00 Glycerate kinase family
NAD_binding_2        PF03446.10   163 sp|P77161|GLXR_ECOLI -            292     1e-49  168.5   0.6   1   1   1.4e-52   2.4e-49  167.3   0.4     2   162     1   160     1   162 0.97 NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11       PF14833.1    122 sp|P77161|GLXR_ECOLI -            292   4.8e-34  117.0   0.7   1   1   4.2e-37     7e-34  116.5   0.7     1   122   163   283   163   283 0.97 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
F420_oxidored        PF03807.12    96 sp|P77161|GLXR_ECOLI -            292   2.4e-07   31.0   0.2   1   1   7.3e-10   1.2e-06   28.8   0.1     1    93     2    92     2    94 0.80 NADP oxidoreductase coenzyme F420-dependent
2-Hacid_dh_C         PF02826.14   178 sp|P77161|GLXR_ECOLI -            292   0.00018   20.6   0.1   1   2   1.3e-06    0.0021   17.2   0.0    38   108     2    72     1    85 0.88 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Rossmann-like        PF10727.4    127 sp|P77161|GLXR_ECOLI -            292     0.001   18.7   0.1   1   1   1.3e-06    0.0021   17.7   0.1    12   105     2    94     1   101 0.77 Rossmann-like domain
3HCDH_N              PF02737.13   180 sp|P77161|GLXR_ECOLI -            292    0.0078   15.8   0.2   1   1   1.3e-05     0.021   14.5   0.1     2    31     3    35     2    72 0.79 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
IlvN                 PF07991.7    165 sp|P77161|GLXR_ECOLI -            292     0.011   15.1   0.0   1   1   1.5e-05     0.024   13.9   0.0     7    74     3    69     1    94 0.85 Acetohydroxy acid isomeroreductase, catalytic domain
UDPG_MGDP_dh_N       PF03721.9    185 sp|P77161|GLXR_ECOLI -            292     0.036   13.4   1.2   1   2   0.00027      0.45    9.8   0.1     1    29     1    29     1    35 0.88 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
ApbA                 PF02558.11   151 sp|P77161|GLXR_ECOLI -            292     0.041   13.3   0.2   1   1   5.4e-05     0.089   12.2   0.2     3    31     5    33     3    73 0.72 Ketopantoate reductase PanE/ApbA
SHMT                 PF00464.14   399 sp|P0A825|GLYA_ECOLI -            417  2.3e-192  638.7   0.3   1   1  1.3e-195  2.7e-192  638.5   0.3     1   399     8   386     8   386 0.99 Serine hydroxymethyltransferase
Aminotran_1_2        PF00155.16   363 sp|P0A825|GLYA_ECOLI -            417   1.3e-10   40.7   0.0   1   1   8.7e-14   1.8e-10   40.2   0.0    55   350    84   368    33   378 0.69 Aminotransferase class I and II
Beta_elim_lyase      PF01212.16   290 sp|P0A825|GLYA_ECOLI -            417   1.7e-06   27.4   0.0   1   1   1.5e-09   3.2e-06   26.4   0.0    35   166    79   202    49   242 0.79 Beta-eliminating lyase
Aminotran_5          PF00266.14   371 sp|P0A825|GLYA_ECOLI -            417   9.1e-06   24.6   0.0   1   1   6.3e-09   1.3e-05   24.1   0.0    50   207    80   236    38   261 0.73 Aminotransferase class-V
OKR_DC_1             PF01276.15   417 sp|P0A825|GLYA_ECOLI -            417    0.0046   15.5   0.0   1   1   4.4e-06    0.0094   14.5   0.0    73   244    80   233    74   300 0.72 Orn/Lys/Arg decarboxylase, major domain
DegT_DnrJ_EryC1      PF01041.12   363 sp|P0A825|GLYA_ECOLI -            417      0.01   14.9   0.4   1   1   9.1e-06     0.019   13.9   0.4    34   188    82   242    74   270 0.79 DegT/DnrJ/EryC1/StrS aminotransferase family
Cys_Met_Meta_PP      PF01053.15   386 sp|P0A825|GLYA_ECOLI -            417     0.011   14.0   0.0   1   1   6.6e-06     0.014   13.7   0.0    65   219    83   243    45   304 0.77 Cys/Met metabolism PLP-dependent enzyme
Epimerase            PF01370.16   236 sp|P0AC88|GM4D_ECOLI -            373   5.3e-72  242.0   0.0   1   1     4e-75   6.6e-72  241.7   0.0     1   236     5   252     5   252 0.98 NAD dependent epimerase/dehydratase family
RmlD_sub_bind        PF04321.12   287 sp|P0AC88|GM4D_ECOLI -            373   8.6e-09   34.6   0.0   1   1   8.6e-12   1.4e-08   33.9   0.0     3   130     5   162     2   173 0.94 RmlD substrate binding domain
Epimerase_Csub       PF13950.1     62 sp|P0AC88|GM4D_ECOLI -            373   6.9e-05   22.7   0.0   1   1   8.4e-08   0.00014   21.7   0.0    18    49   313   344   301   346 0.89 UDP-glucose 4-epimerase C-term subunit
Polysacc_synt_2      PF02719.10   294 sp|P0AC88|GM4D_ECOLI -            373   0.00029   19.8   0.0   1   1     3e-07    0.0005   19.0   0.0     2   116     6   118     5   128 0.78 Polysaccharide biosynthesis protein
adh_short            PF00106.20   167 sp|P0AC88|GM4D_ECOLI -            373    0.0017   18.2   0.0   1   1     2e-06    0.0032   17.3   0.0     1    92     3    97     3   111 0.82 short chain dehydrogenase
NAD_binding_10       PF13460.1    183 sp|P0AC88|GM4D_ECOLI -            373     0.023   14.6   0.0   1   1     4e-05     0.065   13.2   0.0     2    40     6    43     6    56 0.87 NADH(P)-binding
NmrA                 PF05368.8    233 sp|P0AC88|GM4D_ECOLI -            373     0.069   12.3   0.0   1   1     7e-05      0.12   11.6   0.0     2    65     6    78     5    83 0.69 NmrA-like family
KR                   PF08659.5    181 sp|P0AC88|GM4D_ECOLI -            373     0.076   12.6   0.0   1   1   7.4e-05      0.12   11.9   0.0     3    93     5    97     4   116 0.76 KR domain
Glyco_trans_4_2      PF13477.1    139 sp|P0AC88|GM4D_ECOLI -            373      0.16   11.7   0.0   1   1   0.00031      0.52   10.1   0.0     2    79     4    84     3    94 0.83 Glycosyl transferase 4-like
SIS_2                PF13580.1    138 sp|P63224|GMHA_ECOLI -            192   2.1e-31  108.4   0.4   1   1   7.7e-35   3.8e-31  107.6   0.4    15   138    24   146     3   146 0.92 SIS domain
SIS                  PF01380.17   131 sp|P63224|GMHA_ECOLI -            192   5.3e-08   32.5   0.0   1   1   2.1e-11     1e-07   31.6   0.0    51   104   109   162    98   178 0.91 SIS domain
Antibiotic_NAT       PF02522.9    229 sp|P63224|GMHA_ECOLI -            192     0.058   12.6   0.0   1   2   2.8e-05      0.14   11.3   0.0   127   163    41    77    21   114 0.84 Aminoglycoside 3-N-acetyltransferase
Hydrolase_like       PF13242.1     75 sp|P63228|GMHBB_ECOLI -            191   1.1e-13   50.7   0.1   1   1   5.5e-17   1.6e-13   50.1   0.1     1    75   108   179   108   179 0.90 HAD-hyrolase-like
PNK3P                PF08645.6    159 sp|P63228|GMHBB_ECOLI -            191   5.9e-08   32.3   0.0   1   1     4e-11   1.2e-07   31.3   0.0    21   127    23   137     7   153 0.80 Polynucleotide kinase 3 phosphatase
Hydrolase            PF00702.21   215 sp|P63228|GMHBB_ECOLI -            191   1.7e-07   31.8   0.0   1   1   1.6e-10   4.9e-07   30.3   0.0   130   215    33   148    22   148 0.84 haloacid dehalogenase-like hydrolase
HAD_2                PF13419.1    176 sp|P63228|GMHBB_ECOLI -            191   2.9e-07   30.8   0.0   1   2   1.4e-05     0.042   14.0   0.0    73   103    26    56     8    78 0.85 Haloacid dehalogenase-like hydrolase
HAD_2                PF13419.1    176 sp|P63228|GMHBB_ECOLI -            191   2.9e-07   30.8   0.0   2   2   6.9e-06      0.02   15.0   0.0   130   173   108   151    90   155 0.88 Haloacid dehalogenase-like hydrolase
Hydrolase_6          PF13344.1    101 sp|P63228|GMHBB_ECOLI -            191   8.7e-05   22.3   0.0   1   1   7.2e-08   0.00021   21.1   0.0     2    49     9    65     8    76 0.88 Haloacid dehalogenase-like hydrolase
NUDIX                PF00293.23   135 sp|P32056|GMM_ECOLI  -            159   1.1e-18   67.1   0.0   1   1   1.8e-22   1.3e-18   66.9   0.0     6   126    21   144    16   152 0.90 NUDIX domain
NUDIX_4              PF14815.1    114 sp|P32056|GMM_ECOLI  -            159     0.002   17.5   0.1   1   1   8.6e-07    0.0063   15.9   0.1     2    66    22    88    21   138 0.62 NUDIX domain
UPF0052              PF01933.13   301 sp|P75767|GNGF_ECOLI -            302   4.1e-87  292.3   0.1   1   1   3.3e-91     5e-87  292.0   0.1     1   298    12   299    12   301 0.97 Uncharacterised protein family UPF0052
GnsAB                PF08178.6     54 sp|P77695|GNSB_ECOLI -             57   1.2e-31  108.1   6.6   1   1   8.8e-36   1.3e-31  107.9   6.6     1    54     1    54     1    54 1.00 GnsA/GnsB family
GnsAB                PF08178.6     54 sp|P0AC92|GNSA_ECOLI -             57   6.6e-33  112.1   4.2   1   1     5e-37   7.3e-33  111.9   4.2     1    54     1    54     1    54 1.00 GnsA/GnsB family
GntP_permease        PF02447.11   441 sp|P0AC94|GNTP_ECOLI -            447  9.8e-166  551.6  52.1   1   1    3e-169  1.1e-165  551.4  52.1     2   441     5   446     4   446 0.98 GntP family permease
CitMHS               PF03600.11   351 sp|P0AC94|GNTP_ECOLI -            447   9.4e-07   27.7  47.3   1   1   3.8e-10   1.4e-06   27.1  47.3    10   350    16   395     6   396 0.79 Citrate transporter
Na_H_antiport_2      PF13726.1     88 sp|P0AC94|GNTP_ECOLI -            447     0.006   16.4  11.6   1   3   1.6e-06     0.006   16.4  11.6     3    87     9    95     8    96 0.82 Na+-H+ antiporter family
gag-asp_proteas      PF13975.1     72 sp|P0AC94|GNTP_ECOLI -            447     0.041   13.6   0.1   1   1   2.6e-05     0.096   12.5   0.1    16    47    71   101    60   108 0.83 gag-polyprotein putative aspartyl protease
SKI                  PF01202.17   158 sp|P46859|GNTK_ECOLI -            175   1.1e-13   51.3   0.0   1   1   1.3e-16   1.4e-13   51.0   0.0     1   156    17   170    17   172 0.80 Shikimate kinase
AAA_33               PF13671.1    143 sp|P46859|GNTK_ECOLI -            175   6.3e-09   35.8   0.0   1   1   8.6e-12   9.1e-09   35.3   0.0     3   121    12   127    10   144 0.78 AAA domain
APS_kinase           PF01583.15   157 sp|P46859|GNTK_ECOLI -            175   2.7e-06   27.1   0.0   1   1   3.2e-09   3.3e-06   26.8   0.0     6   116    12   120     7   148 0.80 Adenylylsulphate kinase
AAA_18               PF13238.1    129 sp|P46859|GNTK_ECOLI -            175   7.6e-06   26.2   0.0   1   1   1.1e-08   1.1e-05   25.7   0.0     3   114    13   126    12   140 0.78 AAA domain
AAA_17               PF13207.1    121 sp|P46859|GNTK_ECOLI -            175   1.3e-05   26.0   0.0   1   1   1.8e-08   1.9e-05   25.4   0.0     2   110    11   124    10   173 0.69 AAA domain
AAA_16               PF13191.1    185 sp|P46859|GNTK_ECOLI -            175   0.00027   20.9   0.0   1   1   5.7e-07    0.0006   19.8   0.0    26    65    10    46     3    95 0.68 AAA ATPase domain
AAA_22               PF13401.1    131 sp|P46859|GNTK_ECOLI -            175    0.0021   18.2   0.0   1   1   2.6e-06    0.0028   17.8   0.0     4    31     8    35     4   155 0.77 AAA domain
DUF2075              PF09848.4    352 sp|P46859|GNTK_ECOLI -            175      0.03   13.2   0.0   1   1   3.7e-05      0.04   12.9   0.0     2    26     9    41     8   158 0.68 Uncharacterized conserved protein (DUF2075)
AAA                  PF00004.24   132 sp|P46859|GNTK_ECOLI -            175      0.05   13.7   0.0   1   1   0.00013      0.14   12.3   0.0     2    27    12    37    11    49 0.91 ATPase family associated with various cellular activities (AAA)
Cytidylate_kin2      PF13189.1    179 sp|P46859|GNTK_ECOLI -            175     0.051   13.4   0.0   1   1   9.5e-05       0.1   12.5   0.0     8    72    17    81    12   155 0.71 Cytidylate kinase-like family
Arch_ATPase          PF01637.13   234 sp|P46859|GNTK_ECOLI -            175      0.06   13.0   0.0   1   1     7e-05     0.074   12.7   0.0    19    82     7    69     2   124 0.66 Archaeal ATPase
DUF258               PF03193.11   161 sp|P46859|GNTK_ECOLI -            175      0.11   11.6   0.0   1   1   0.00013      0.14   11.3   0.0    34    59     7    32     2    94 0.82 Protein of unknown function, DUF258
Zeta_toxin           PF06414.7    201 sp|P46859|GNTK_ECOLI -            175      0.15   11.1   0.0   1   1   0.00019       0.2   10.7   0.0    17    51     9    40     2    98 0.71 Zeta toxin
GntP_permease        PF02447.11   441 sp|P0AC96|GNTU_ECOLI -            446  1.2e-166  554.6  44.7   1   1  3.6e-170  1.3e-166  554.4  44.7     2   438     5   441     4   445 0.98 GntP family permease
CitMHS               PF03600.11   351 sp|P0AC96|GNTU_ECOLI -            446   4.7e-11   41.8  33.1   1   1   2.1e-14   7.7e-11   41.1  33.1     6   330    14   374     9   392 0.73 Citrate transporter
DUF401               PF04165.7    386 sp|P0AC96|GNTU_ECOLI -            446   1.4e-07   30.9   4.7   2   2   3.7e-11   1.4e-07   30.9   4.7   223   367   270   422   267   444 0.78 Protein of unknown function (DUF401)
Na_H_antiport_2      PF13726.1     88 sp|P0AC96|GNTU_ECOLI -            446   0.00035   20.4  10.5   1   1   9.4e-08   0.00035   20.4  10.5     4    86    11    95     7    97 0.82 Na+-H+ antiporter family
Pribosyltran         PF00156.22   125 sp|P46846|GNTX_ECOLI -            227   2.7e-09   36.8   0.0   1   1   2.1e-12   4.4e-09   36.1   0.0    45   124   141   223   136   224 0.82 Phosphoribosyl transferase domain
PRTase_2             PF15609.1    191 sp|P46846|GNTX_ECOLI -            227    0.0042   16.4   0.0   1   1   4.5e-06    0.0095   15.2   0.0   105   147   161   213   155   224 0.68 Phosphoribosyl transferase
UPRTase              PF14681.1    207 sp|P46846|GNTX_ECOLI -            227    0.0052   16.0   0.0   1   1     4e-06    0.0085   15.3   0.0   112   157   180   223   151   225 0.73 Uracil phosphoribosyltransferase
DZR                  PF12773.2     50 sp|P46846|GNTX_ECOLI -            227     0.026   14.3   7.6   1   1   3.5e-05     0.073   12.8   7.6     1    40    23    59     8    64 0.78 Double zinc ribbon
PRTase_3             PF15610.1    274 sp|P46846|GNTX_ECOLI -            227      0.15   10.9   0.0   1   1   9.1e-05      0.19   10.5   0.0   136   168   185   217   135   224 0.79 PRTase ComF-like
Pribosyl_synth       PF14572.1    184 sp|P46846|GNTX_ECOLI -            227      0.17   11.6   0.0   1   1   0.00011      0.24   11.1   0.0    73   116   177   220   148   225 0.78 Phosphoribosyl synthetase-associated domain
zf-C3HC4_3           PF13920.1     50 sp|P46846|GNTX_ECOLI -            227      0.91    9.2   9.5   2   2   0.00021      0.44   10.2   5.5    21    47    18    44     8    47 0.88 Zinc finger, C3HC4 type (RING finger)
GntP_permease        PF02447.11   441 sp|P39835|GNTT_ECOLI -            438  2.2e-188  626.2  45.8   1   1  8.6e-192  2.6e-188  626.0  45.8     1   441     1   437     1   437 0.99 GntP family permease
CitMHS               PF03600.11   351 sp|P39835|GNTT_ECOLI -            438   8.4e-09   34.4  40.4   1   1   4.3e-12   1.3e-08   33.8  40.1     5   350     8   386     3   387 0.78 Citrate transporter
Na_H_antiporter      PF03553.9    303 sp|P39835|GNTT_ECOLI -            438     4e-06   26.0  19.5   1   1   1.4e-09     4e-06   26.0  19.5    65   257   213   393   160   394 0.69 Na+/H+ antiporter family
DUF3007              PF11460.3    104 sp|P39835|GNTT_ECOLI -            438     0.048   13.7   1.5   1   1   8.4e-05      0.25   11.4   1.5     4    64   296   356   293   361 0.92 Protein of unknown function (DUF3007)
Na_H_antiport_2      PF13726.1     88 sp|P39835|GNTT_ECOLI -            438       1.3    8.9  33.6   1   3     2e-05     0.061   13.2  12.6     3    83     4    88     3    93 0.72 Na+-H+ antiporter family
Na_H_antiport_2      PF13726.1     88 sp|P39835|GNTT_ECOLI -            438       1.3    8.9  33.6   2   3   0.00015      0.46   10.4   1.2    21    84   263   330   261   333 0.72 Na+-H+ antiporter family
NAD_Gly3P_dh_C       PF07479.9    149 sp|P0A6S7|GPDA_ECOLI -            339     3e-54  182.7   0.6   1   1   6.1e-57   4.8e-54  182.1   0.6     2   147   184   325   183   327 0.98 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
NAD_Gly3P_dh_N       PF01210.18   157 sp|P0A6S7|GPDA_ECOLI -            339   5.1e-51  172.4   0.0   1   1   9.3e-54   7.3e-51  172.0   0.0     2   157     8   164     7   164 0.99 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
ApbA                 PF02558.11   151 sp|P0A6S7|GPDA_ECOLI -            339   7.3e-12   44.9   0.0   1   1   1.5e-14   1.2e-11   44.2   0.0     2   107     9   115     8   140 0.92 Ketopantoate reductase PanE/ApbA
F420_oxidored        PF03807.12    96 sp|P0A6S7|GPDA_ECOLI -            339   8.2e-07   29.3   0.0   1   2   1.7e-08   1.3e-05   25.5   0.0     3    83     9    97     7   106 0.88 NADP oxidoreductase coenzyme F420-dependent
NAD_binding_2        PF03446.10   163 sp|P0A6S7|GPDA_ECOLI -            339   4.6e-05   23.3   0.0   1   1   1.5e-07   0.00011   22.0   0.0     3   109     7   124     5   145 0.86 NAD binding domain of 6-phosphogluconate dehydrogenase
UDPG_MGDP_dh_N       PF03721.9    185 sp|P0A6S7|GPDA_ECOLI -            339   6.5e-05   22.3   0.0   1   2   8.8e-07   0.00069   19.0   0.0     3    45     8    50     6    87 0.90 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
3HCDH_N              PF02737.13   180 sp|P0A6S7|GPDA_ECOLI -            339   0.00035   20.2   0.0   1   1   9.6e-07   0.00075   19.1   0.0     2    38     8    44     7    53 0.89 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
GIDA                 PF01134.17   392 sp|P0A6S7|GPDA_ECOLI -            339   0.00045   19.2   0.0   1   1     1e-06   0.00079   18.3   0.0     2    38     8    44     7    55 0.87 Glucose inhibited division protein A
TrkA_N               PF02254.13   116 sp|P0A6S7|GPDA_ECOLI -            339    0.0013   18.7   0.0   1   1   7.9e-06    0.0062   16.5   0.0     2    44     9    52     8    84 0.84 TrkA-N domain
Methyltransf_23      PF13489.1    161 sp|P0A6S7|GPDA_ECOLI -            339    0.0095   15.6   0.0   1   1   3.2e-05     0.025   14.2   0.0    21   127     5   121     2   139 0.81 Methyltransferase domain
DAO                  PF01266.19   358 sp|P0A6S7|GPDA_ECOLI -            339     0.021   13.7   0.2   1   1   4.9e-05     0.038   12.8   0.2     3    27     9    33     7    42 0.92 FAD dependent oxidoreductase
IlvN                 PF07991.7    165 sp|P0A6S7|GPDA_ECOLI -            339     0.031   13.6   0.0   1   1   0.00054      0.42    9.9   0.0     5    93     6   107     3   119 0.57 Acetohydroxy acid isomeroreductase, catalytic domain
Glyco_trans_4_4      PF13579.1    160 sp|P0A6S7|GPDA_ECOLI -            339     0.057   13.5   1.0   1   1   0.00042      0.33   11.0   1.0     2    59    12    71    12   149 0.71 Glycosyl transferase 4-like domain
Pyr_redox_2          PF07992.9    201 sp|P0A6S7|GPDA_ECOLI -            339     0.058   13.2   3.7   1   1     9e-05     0.071   12.9   3.7     3    30     9    36     7   310 0.94 Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8        PF13450.1     68 sp|P0A6S7|GPDA_ECOLI -            339     0.059   13.3   0.1   1   1   7.6e-05     0.059   13.3   0.1     1    25    10    34    10    39 0.94 NAD(P)-binding Rossmann-like domain
NAD_binding_10       PF13460.1    183 sp|P0A6S7|GPDA_ECOLI -            339     0.063   13.2   0.0   1   1   0.00015      0.12   12.4   0.0     3    37    10    43     8    87 0.89 NADH(P)-binding
ThiF                 PF00899.16   136 sp|P0A6S7|GPDA_ECOLI -            339     0.069   12.9   0.0   1   1   0.00044      0.35   10.7   0.0     1    26     4    29     4    42 0.91 ThiF family
Rossmann-like        PF10727.4    127 sp|P0A6S7|GPDA_ECOLI -            339     0.071   12.8   0.1   1   1   0.00022      0.17   11.5   0.1    12    38     7    33     1    96 0.76 Rossmann-like domain
Shikimate_DH         PF01488.15   135 sp|P0A6S7|GPDA_ECOLI -            339       0.1   12.7   0.4   1   1    0.0011      0.86    9.7   0.0    12    52     5    44     2    84 0.82 Shikimate / quinate 5-dehydrogenase
HAD_2                PF13419.1    176 sp|P32662|GPH_ECOLI  -            252   7.4e-30  104.4   0.0   1   1   7.2e-33   1.1e-29  103.9   0.0     1   175    10   209    10   210 0.76 Haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P32662|GPH_ECOLI  -            252   3.3e-20   73.4   0.1   1   1   2.9e-23   4.3e-20   73.0   0.1     1   215     7   204     7   204 0.77 haloacid dehalogenase-like hydrolase
Hydrolase_like       PF13242.1     75 sp|P32662|GPH_ECOLI  -            252   7.3e-12   44.8   0.0   1   1     1e-14   1.5e-11   43.7   0.0     3    74   166   234   164   235 0.89 HAD-hyrolase-like
HAD                  PF12710.2    192 sp|P32662|GPH_ECOLI  -            252   1.7e-11   44.6   0.0   1   1   1.6e-14   2.4e-11   44.1   0.0     1   192    10   201    10   201 0.58 haloacid dehalogenase-like hydrolase
Hydrolase_3          PF08282.7    254 sp|P32662|GPH_ECOLI  -            252   5.1e-07   29.5   0.0   3   3   7.6e-05      0.11   12.0   0.0   193   222   175   204   172   208 0.89 haloacid dehalogenase-like hydrolase
Hydrolase_6          PF13344.1    101 sp|P32662|GPH_ECOLI  -            252   0.00031   20.5   0.0   2   2     2e-05      0.03   14.1   0.0    12    41   109   138    97   155 0.86 Haloacid dehalogenase-like hydrolase
Acid_PPase           PF12689.2    169 sp|P32662|GPH_ECOLI  -            252    0.0035   16.9   0.0   2   2   2.9e-05     0.043   13.4   0.0    44   155   110   215    75   221 0.79 Acid Phosphatase
NIF                  PF03031.13   159 sp|P32662|GPH_ECOLI  -            252     0.033   13.8   0.0   2   2   0.00057      0.84    9.2   0.0    35   124   110   202    80   232 0.82 NLI interacting factor-like phosphatase
S6PP                 PF05116.8    247 sp|P32662|GPH_ECOLI  -            252      0.11   11.8   0.0   2   2   0.00027      0.41    9.9   0.0   173   197   176   200   169   211 0.84 Sucrose-6F-phosphate phosphohydrolase
His_Phos_1           PF00300.17   158 sp|P62707|GPMA_ECOLI -            250   3.2e-43  147.5   0.0   1   1   2.8e-47   4.1e-43  147.1   0.0     1   158     5   191     5   191 0.94 Histidine phosphatase superfamily (branch 1)
His_Phos_1           PF00300.17   158 sp|P0A7A2|GPMB_ECOLI -            215   1.1e-38  132.7   0.1   1   1   1.9e-42   1.4e-38  132.4   0.1     1   157     3   156     3   157 0.91 Histidine phosphatase superfamily (branch 1)
PTH2                 PF01981.11   116 sp|P0A7A2|GPMB_ECOLI -            215     0.042   13.5   0.1   1   1     1e-05     0.075   12.7   0.1    37    87    10    60     1    72 0.87 Peptidyl-tRNA hydrolase PTH2
Metalloenzyme        PF01676.13   252 sp|P37689|GPMI_ECOLI -            514   7.6e-94  313.7   0.4   1   1   4.1e-97   8.7e-94  313.5   0.4     1   251     6   507     6   508 0.99 Metalloenzyme superfamily
iPGM_N               PF06415.8    223 sp|P37689|GPMI_ECOLI -            514   3.8e-89  297.8   0.6   1   1   2.6e-92   5.6e-89  297.3   0.6     2   223    85   308    84   308 0.99 BPG-independent PGAM N-terminus (iPGM_N)
Phosphodiest         PF01663.17   365 sp|P37689|GPMI_ECOLI -            514   3.2e-05   23.4   0.0   1   1   2.2e-08   4.6e-05   22.8   0.0   104   248   303   450   259   492 0.72 Type I phosphodiesterase / nucleotide pyrophosphatase
Sulfatase            PF00884.18   308 sp|P37689|GPMI_ECOLI -            514     0.012   14.7   0.0   1   1   9.1e-06     0.019   14.1   0.0   196   308   400   499   319   499 0.78 Sulfatase
PIG-L                PF02585.12   128 sp|P37689|GPMI_ECOLI -            514     0.038   14.4   0.4   1   1   0.00024       0.5   10.8   0.1    48   127   322   417    89   418 0.82 GlcNAc-PI de-N-acetylase
Ppx-GppA             PF02541.11   285 sp|P25552|GPPA_ECOLI -            494  1.6e-103  345.7   0.6   1   1  3.4e-107  2.5e-103  345.1   0.6     1   283    21   301    21   303 0.99 Ppx/GppA phosphatase family
DDR                  PF08841.5    332 sp|P25552|GPPA_ECOLI -            494     0.072   11.9   0.1   1   1   1.5e-05      0.11   11.3   0.1   103   188    99   188    80   242 0.69 Diol dehydratase reactivase ATPase-like domain
Aldo_ket_red         PF00248.16   283 sp|Q46851|GPR_ECOLI  -            346     3e-75  252.6   0.0   1   1   4.6e-79   3.4e-75  252.4   0.0     2   282    28   332    27   333 0.96 Aldo/keto reductase family
GP46                 PF07409.7    116 sp|Q46851|GPR_ECOLI  -            346    0.0028   16.9   0.1   1   1   8.9e-07    0.0066   15.7   0.1    58    91   274   307   264   330 0.79 Phage protein GP46
GreA_GreB_N          PF03449.10    74 sp|P0A6W5|GREA_ECOLI -            158     2e-32  111.0   1.1   1   1   5.3e-36   2.6e-32  110.6   1.1     4    74     3    74     1    74 0.97 Transcription elongation factor, N-terminal
GreA_GreB            PF01272.14    77 sp|P0A6W5|GREA_ECOLI -            158   8.7e-29   99.0   0.5   1   1   2.4e-32   1.2e-28   98.6   0.5     3    77    83   157    80   157 0.97 Transcription elongation factor, GreA/GreB, C-term
DUF3888              PF13027.1     88 sp|P0A6W5|GREA_ECOLI -            158      0.11   12.3   0.6   1   2   6.2e-05       0.3   10.9   0.0    28    67    68   107    60   118 0.86 Protein of unknown function (DUF3888)
GreA_GreB_N          PF03449.10    74 sp|P30128|GREB_ECOLI -            158   3.6e-30  103.8   0.7   1   1   7.3e-34   5.4e-30  103.2   0.7     1    74     1    74     1    74 0.97 Transcription elongation factor, N-terminal
GreA_GreB            PF01272.14    77 sp|P30128|GREB_ECOLI -            158   1.5e-22   79.1   0.0   1   1   3.1e-26   2.3e-22   78.4   0.0     2    77    81   155    80   155 0.98 Transcription elongation factor, GreA/GreB, C-term
GrpE                 PF01025.14   166 sp|P09372|GRPE_ECOLI -            197   2.6e-47  160.4   3.5   1   1   6.3e-51   3.1e-47  160.1   3.5     5   166    35   194     7   194 0.86 GrpE
Baculo_PEP_C         PF04513.7    140 sp|P09372|GRPE_ECOLI -            197     0.017   14.9   0.1   1   1   5.1e-06     0.025   14.3   0.1    30   126    45   145    41   158 0.90 Baculovirus polyhedron envelope protein, PEP, C terminus
Aminotran_3          PF00202.16   339 sp|P23893|GSA_ECOLI  -            426   8.2e-75  251.7   0.0   1   1     2e-78   9.7e-75  251.5   0.0     1   338    35   360    35   361 0.92 Aminotransferase class-III
AP_endonuc_2         PF01261.19   213 sp|P23893|GSA_ECOLI  -            426     0.038   13.2   0.0   1   1   1.3e-05     0.064   12.5   0.0    71   126   330   391   304   426 0.77 Xylose isomerase-like TIM barrel
Glu_cys_ligase       PF04262.9    377 sp|P0A6W9|GSH1_ECOLI -            518  4.8e-181  601.2   0.0   1   1    4e-185  5.9e-181  600.9   0.0     2   377     7   381     6   381 0.99 Glutamate-cysteine ligase
GSH-S_ATP            PF02955.11   174 sp|P04425|GSHB_ECOLI -            316   8.3e-77  256.2   0.0   1   1   6.5e-80   1.2e-76  255.6   0.0     1   171   124   295   124   298 0.99 Prokaryotic glutathione synthetase, ATP-grasp domain
GSH-S_N              PF02951.9    119 sp|P04425|GSHB_ECOLI -            316     2e-48  163.1   0.0   1   1   1.6e-51     3e-48  162.5   0.0     1   119     2   120     2   120 0.99 Prokaryotic glutathione synthetase, N-terminal domain
RimK                 PF08443.6    190 sp|P04425|GSHB_ECOLI -            316   1.8e-11   43.9   0.0   1   1   1.3e-14   2.4e-11   43.4   0.0    18   156   135   277   131   309 0.81 RimK-like ATP-grasp domain
ATPgrasp_YheCD       PF14398.1    262 sp|P04425|GSHB_ECOLI -            316   3.4e-07   29.3   0.0   1   1   3.1e-10   5.7e-07   28.6   0.0    34    92   133   193   128   207 0.85 YheC/D like ATP-grasp
ATP-grasp_4          PF13535.1    184 sp|P04425|GSHB_ECOLI -            316    0.0016   18.1   0.0   1   1   1.5e-06    0.0029   17.3   0.0    19   106   135   220   125   248 0.79 ATP-grasp domain
ATPgrasp_Ter         PF15632.1    330 sp|P04425|GSHB_ECOLI -            316    0.0054   15.5   0.0   1   1     4e-06    0.0074   15.0   0.0    87   192   106   205    93   215 0.75 ATP-grasp in the biosynthetic pathway with Ter operon
ATP-grasp_3          PF02655.9    161 sp|P04425|GSHB_ECOLI -            316     0.023   14.5   0.0   1   1   2.2e-05     0.041   13.7   0.0    10    61   130   184   122   206 0.70 ATP-grasp domain
ATPgrasp_ST          PF14397.1    285 sp|P04425|GSHB_ECOLI -            316     0.036   13.1   0.0   1   2     6e-05      0.11   11.5   0.0    20    93   108   174    93   206 0.78 Sugar-transfer associated ATP-grasp
Pyr_redox_2          PF07992.9    201 sp|P06715|GSHR_ECOLI -            450   3.3e-43  147.9   1.4   1   1   3.1e-46   5.7e-43  147.1   1.1     2   197     7   305     6   308 0.94 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim        PF02852.17   110 sp|P06715|GSHR_ECOLI -            450     4e-37  126.6   0.8   3   3   3.2e-39   5.9e-36  122.8   0.3     1   110   339   450   339   450 0.99 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Pyr_redox            PF00070.22    80 sp|P06715|GSHR_ECOLI -            450   7.7e-18   64.6   0.0   1   1   1.5e-20   2.8e-17   62.8   0.0     1    79   169   248   169   250 0.96 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P06715|GSHR_ECOLI -            450   4.2e-09   36.7   0.1   1   3   3.1e-10   5.7e-07   29.8   0.1     3   200    10   200     8   203 0.75 Pyridine nucleotide-disulphide oxidoreductase
GIDA                 PF01134.17   392 sp|P06715|GSHR_ECOLI -            450    0.0003   19.7   0.9   1   2   3.6e-06    0.0067   15.3   0.1     3   150     8   141     6   151 0.83 Glucose inhibited division protein A
FAD_binding_2        PF00890.19   417 sp|P06715|GSHR_ECOLI -            450     0.028   13.2   5.5   3   3   0.00034      0.64    8.8   0.1   373   402   274   305   270   312 0.88 FAD binding domain
FAD_oxidored         PF12831.2    428 sp|P06715|GSHR_ECOLI -            450     0.097   11.7   0.1   1   2    0.0002      0.37    9.7   0.1     4    47     9    51     6   133 0.81 FAD dependent oxidoreductase
ABC_tran             PF00005.22   137 sp|P75796|GSIA_ECOLI -            623   2.6e-61  205.8   0.0   1   2   2.8e-31   9.6e-29  100.4   0.1     2   136    33   196    32   197 0.95 ABC transporter
ABC_tran             PF00005.22   137 sp|P75796|GSIA_ECOLI -            623   2.6e-61  205.8   0.0   2   2   4.1e-32   1.4e-29  103.1   0.0     2   136   341   491   340   492 0.94 ABC transporter
oligo_HPY            PF08352.7     64 sp|P75796|GSIA_ECOLI -            623   9.4e-21   73.9   0.4   1   2   3.4e-11   1.2e-08   35.1   0.1     1    33   248   280   248   303 0.88 Oligopeptide/dipeptide transporter, C-terminal region
oligo_HPY            PF08352.7     64 sp|P75796|GSIA_ECOLI -            623   9.4e-21   73.9   0.4   2   2   1.2e-11   4.1e-09   36.6   0.0     1    33   543   575   543   594 0.85 Oligopeptide/dipeptide transporter, C-terminal region
AAA_21               PF13304.1    303 sp|P75796|GSIA_ECOLI -            623   5.2e-18   66.0   0.0   2   4   1.4e-08   4.7e-06   26.7   0.0   232   298   164   228    96   233 0.84 AAA domain
AAA_21               PF13304.1    303 sp|P75796|GSIA_ECOLI -            623   5.2e-18   66.0   0.0   3   4    0.0013      0.45   10.4   0.0     4    25   355   383   353   432 0.73 AAA domain
AAA_21               PF13304.1    303 sp|P75796|GSIA_ECOLI -            623   5.2e-18   66.0   0.0   4   4   1.8e-06   0.00063   19.7   0.0   232   301   459   526   435   528 0.93 AAA domain
SMC_N                PF02463.14   220 sp|P75796|GSIA_ECOLI -            623   8.5e-12   44.7   0.3   1   2   1.3e-09   4.5e-07   29.3   0.3    26   213    44   244    30   250 0.69 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|P75796|GSIA_ECOLI -            623   8.5e-12   44.7   0.3   2   2   0.00025     0.087   12.0   0.0    28   212   354   537   339   543 0.81 RecF/RecN/SMC N terminal domain
AAA_16               PF13191.1    185 sp|P75796|GSIA_ECOLI -            623   1.2e-10   41.6   3.3   1   2   1.8e-06   0.00064   19.7   1.0    18    60    36    78    24   225 0.69 AAA ATPase domain
AAA_16               PF13191.1    185 sp|P75796|GSIA_ECOLI -            623   1.2e-10   41.6   3.3   2   2   4.6e-07   0.00016   21.7   0.1    24   103   350   426   331   519 0.70 AAA ATPase domain
AAA_22               PF13401.1    131 sp|P75796|GSIA_ECOLI -            623   4.7e-10   39.7   2.6   1   2   8.2e-05     0.028   14.5   0.4     5    69    43   136    39   232 0.52 AAA domain
AAA_22               PF13401.1    131 sp|P75796|GSIA_ECOLI -            623   4.7e-10   39.7   2.6   2   2   2.9e-06     0.001   19.2   0.1     7   122   353   520   350   530 0.71 AAA domain
AAA_29               PF13555.1     62 sp|P75796|GSIA_ECOLI -            623   1.5e-08   34.0   0.3   1   2   4.2e-05     0.015   14.8   0.1    17    47    37    66    31    73 0.81 P-loop containing region of AAA domain
AAA_29               PF13555.1     62 sp|P75796|GSIA_ECOLI -            623   1.5e-08   34.0   0.3   2   2   9.8e-06    0.0034   16.8   0.0    16    56   344   384   337   387 0.75 P-loop containing region of AAA domain
AAA_10               PF12846.2    304 sp|P75796|GSIA_ECOLI -            623   7.9e-08   32.0   2.3   1   3   0.00021     0.072   12.5   0.0     4    30    45    71    42   152 0.87 AAA-like domain
FtsK_SpoIIIE         PF01580.13   205 sp|P75796|GSIA_ECOLI -            623   3.9e-06   26.4   2.8   1   2   9.9e-05     0.034   13.6   0.0    27    60    31    64    19    68 0.83 FtsK/SpoIIIE family
FtsK_SpoIIIE         PF01580.13   205 sp|P75796|GSIA_ECOLI -            623   3.9e-06   26.4   2.8   2   2    0.0003       0.1   12.0   0.0    27    59   339   371   317   374 0.77 FtsK/SpoIIIE family
AAA_25               PF13481.1    194 sp|P75796|GSIA_ECOLI -            623   1.8e-05   24.2   0.1   1   2    0.0002      0.07   12.5   0.0    30    55    39    64    21   154 0.84 AAA domain
DUF258               PF03193.11   161 sp|P75796|GSIA_ECOLI -            623   2.5e-05   23.5   0.4   1   2   0.00032      0.11   11.6   0.0    20    57    26    64    11    98 0.76 Protein of unknown function, DUF258
DUF258               PF03193.11   161 sp|P75796|GSIA_ECOLI -            623   2.5e-05   23.5   0.4   2   2    0.0012      0.41    9.8   0.1    22    62   336   377   326   387 0.77 Protein of unknown function, DUF258
MobB                 PF03205.9    140 sp|P75796|GSIA_ECOLI -            623   0.00011   21.9   0.2   2   2     0.001      0.36   10.5   0.0     3    30   353   380   351   395 0.88 Molybdopterin guanine dinucleotide synthesis protein B
AAA_18               PF13238.1    129 sp|P75796|GSIA_ECOLI -            623   0.00013   22.2   0.0   2   2   0.00064      0.22   11.8   0.0     3    23   355   379   354   415 0.79 AAA domain
AAA_30               PF13604.1    196 sp|P75796|GSIA_ECOLI -            623   0.00019   21.1   0.1   2   2     0.001      0.36   10.3   0.0    21    50   354   382   339   391 0.88 AAA domain
IstB_IS21            PF01695.12   178 sp|P75796|GSIA_ECOLI -            623   0.00022   20.7   0.4   1   2     2e-05     0.007   15.7   0.0    30    68    24    63    11    81 0.89 IstB-like ATP binding protein
Zeta_toxin           PF06414.7    201 sp|P75796|GSIA_ECOLI -            623   0.00024   20.2   0.1   1   2   0.00076      0.26   10.3   0.0    18    79    44   106    28   118 0.80 Zeta toxin
DUF87                PF01935.12   229 sp|P75796|GSIA_ECOLI -            623   0.00035   20.4   2.0   1   2     0.001      0.36   10.6   0.4    26    47    45    66    42    73 0.87 Domain of unknown function DUF87
AAA_5                PF07728.9    139 sp|P75796|GSIA_ECOLI -            623   0.00048   19.8   0.3   1   2    0.0023       0.8    9.4   0.0     3    35    46    78    44   164 0.87 AAA domain (dynein-related subfamily)
T2SE                 PF00437.15   272 sp|P75796|GSIA_ECOLI -            623   0.00082   18.3   3.3   1   3     0.002      0.67    8.7   0.1   109   155    23    69     9   101 0.79 Type II/IV secretion system protein
Hpr_kinase_C         PF07475.7    171 sp|P75796|GSIA_ECOLI -            623    0.0011   18.3   0.8   1   2   8.2e-05     0.028   13.7   0.1    22    77    46   103    41   110 0.78 HPr Serine kinase C-terminal domain
Sigma54_activat      PF00158.21   168 sp|P75796|GSIA_ECOLI -            623    0.0024   17.3   0.1   1   2    0.0022      0.76    9.2   0.0    11    48    31    68    21    81 0.75 Sigma-54 interaction domain
NACHT                PF05729.7    166 sp|P75796|GSIA_ECOLI -            623    0.0037   16.9   0.4   1   2    0.0019      0.64    9.6   0.0     2    27    44    69    43    98 0.81 NACHT domain
CbiA                 PF01656.18   195 sp|P75796|GSIA_ECOLI -            623    0.0097   15.3   4.9   1   2   0.00021     0.071   12.4   1.2     6    31    49    74    45   248 0.76 CobQ/CobB/MinD/ParA nucleotide binding domain
AAA_15               PF13175.1    415 sp|P75796|GSIA_ECOLI -            623     0.013   14.5   0.0   2   3    0.0013      0.45    9.4   0.0   372   411   189   228   166   232 0.89 AAA ATPase domain
ATP-synt_ab          PF00006.20   215 sp|P75796|GSIA_ECOLI -            623     0.014   14.9   0.0   1   2   0.00074      0.25   10.7   0.0     8    44    35    71    30   190 0.69 ATP synthase alpha/beta family, nucleotide-binding domain
AIG1                 PF04548.11   212 sp|P75796|GSIA_ECOLI -            623     0.021   13.9   0.7   2   2    0.0026      0.89    8.6   0.1     2    22   352   372   351   377 0.89 AIG1 family
DUF2075              PF09848.4    352 sp|P75796|GSIA_ECOLI -            623      0.06   12.3   0.3   1   1   0.00058       0.2   10.5   0.0     4    48    45   102    42   189 0.57 Uncharacterized conserved protein (DUF2075)
ResIII               PF04851.10   184 sp|P75796|GSIA_ECOLI -            623      0.18   11.5   0.1   1   1    0.0017       0.6    9.9   0.0     9    51    29    68    20   150 0.81 Type III restriction enzyme, res subunit
SBP_bac_5            PF00496.17   374 sp|P75797|GSIB_ECOLI -            512   8.6e-95  317.7  11.9   1   1   2.2e-98   1.1e-94  317.3  11.9     1   372    70   429    70   431 0.95 Bacterial extracellular solute-binding proteins, family 5 Middle
Ssl1                 PF04056.9    193 sp|P75797|GSIB_ECOLI -            512     0.018   14.6   0.0   1   1   8.9e-06     0.044   13.3   0.0    86   160    13    92     6   103 0.77 Ssl1-like
ATLF                 PF07737.6    226 sp|P75797|GSIB_ECOLI -            512     0.048   13.0   0.0   1   1   1.5e-05     0.076   12.3   0.0    52   144    64   160    37   173 0.78 Anthrax toxin lethal factor, N- and C-terminal domain
BPD_transp_1         PF00528.17   185 sp|P75798|GSIC_ECOLI -            306   4.3e-43  146.9  10.6   2   2   8.7e-47   4.3e-43  146.9  10.6     1   184   113   304   113   305 0.99 Binding-protein-dependent transport system inner membrane component
DUF2937              PF11157.3    167 sp|P75798|GSIC_ECOLI -            306     0.018   14.3   0.3   1   2   1.2e-05     0.058   12.7   0.1   113   151    83   121    46   127 0.89 Protein of unknown function (DUF2937)
DUF3816              PF12822.2    172 sp|P75798|GSIC_ECOLI -            306       8.7    6.1  12.9   2   2   4.6e-05      0.23   11.3   5.7    27   149    97   232    77   263 0.73 Protein of unknown function (DUF3816)
BPD_transp_1         PF00528.17   185 sp|P75799|GSID_ECOLI -            303   9.1e-31  106.8  12.8   2   2   1.8e-34   9.1e-31  106.8  12.8     1   184   119   302   119   303 0.99 Binding-protein-dependent transport system inner membrane component
OppC_N               PF12911.2     56 sp|P75799|GSID_ECOLI -            303   1.4e-17   62.7   0.2   1   1   2.9e-21   1.4e-17   62.7   0.2     2    56    24    79    23    79 0.86 N-terminal TM domain of oligopeptide transport permease C
Gly-zipper_OmpA      PF13436.1    118 sp|P75799|GSID_ECOLI -            303       0.3   10.7   0.9   1   1   0.00012       0.6    9.7   0.9    61    95    98   130    93   133 0.85 Glycine-zipper containing OmpA-like membrane domain
AAA_22               PF13401.1    131 sp|P45756|GSPA_ECOLI -            489   1.3e-11   44.7   0.0   1   1   2.6e-14   3.5e-11   43.3   0.0     3   126    18   137    15   142 0.84 AAA domain
PG_binding_1         PF01471.13    57 sp|P45756|GSPA_ECOLI -            489   1.2e-08   34.7   0.0   1   1   1.8e-11   2.5e-08   33.7   0.0     2    55   408   461   407   463 0.94 Putative peptidoglycan binding domain
AAA_16               PF13191.1    185 sp|P45756|GSPA_ECOLI -            489   0.00043   20.3   0.5   1   1   3.9e-06    0.0052   16.7   0.5    18    59    13    53     4   133 0.78 AAA ATPase domain
AAA_25               PF13481.1    194 sp|P45756|GSPA_ECOLI -            489   0.00065   19.1   0.0   1   1   1.3e-06    0.0017   17.7   0.0    35   140    21   125     4   133 0.77 AAA domain
PIF1                 PF05970.9    364 sp|P45756|GSPA_ECOLI -            489    0.0064   15.4   0.0   1   1   8.1e-06     0.011   14.7   0.0    23   127    20   123     6   129 0.74 PIF1-like helicase
NACHT                PF05729.7    166 sp|P45756|GSPA_ECOLI -            489    0.0066   16.1   0.0   1   1   1.3e-05     0.018   14.7   0.0     1    23    20    42    20    53 0.88 NACHT domain
NB-ARC               PF00931.17   287 sp|P45756|GSPA_ECOLI -            489     0.024   13.4   0.0   1   1   3.5e-05     0.048   12.5   0.0     6    44     6    44     2    94 0.90 NB-ARC domain
PhoH                 PF02562.11   205 sp|P45756|GSPA_ECOLI -            489     0.059   12.5   0.0   1   1   0.00013      0.17   11.0   0.0    20    48    20    43     7    60 0.75 PhoH-like protein
AAA_5                PF07728.9    139 sp|P45756|GSPA_ECOLI -            489     0.063   13.0   0.0   1   1   0.00014      0.18   11.4   0.0     4    21    24    41    22    53 0.86 AAA domain (dynein-related subfamily)
Sigma54_activ_2      PF14532.1    138 sp|P45756|GSPA_ECOLI -            489     0.077   13.0   0.0   1   1   0.00014      0.18   11.8   0.0    25    48    23    46    12   125 0.78 Sigma-54 interaction domain
Pilus_PilP           PF11356.3     87 sp|P45757|GSPC_ECOLI -            271   1.3e-11   44.5   0.0   1   1   2.8e-15   2.1e-11   43.9   0.0     4    86    67   150    64   151 0.89 Type IV pilus biogenesis
PDZ_2                PF13180.1     82 sp|P45757|GSPC_ECOLI -            271     0.024   14.5   0.0   1   1   8.1e-06      0.06   13.2   0.0    28    82   202   256   193   256 0.92 PDZ domain
Secretin             PF00263.16   165 sp|P45758|GSPD_ECOLI -            650   3.1e-51  173.0   5.0   1   1   9.3e-55   6.9e-51  171.9   5.0     1   165   433   595   433   595 0.93 Bacterial type II and III secretion system protein
Secretin_N           PF03958.12    82 sp|P45758|GSPD_ECOLI -            650   8.1e-47  157.3   9.9   1   3   1.1e-14     8e-11   41.9   0.1     1    78   127   186   127   189 0.97 Bacterial type II/III secretion system short domain
Secretin_N           PF03958.12    82 sp|P45758|GSPD_ECOLI -            650   8.1e-47  157.3   9.9   2   3   6.4e-21   4.8e-17   61.9   0.2     2    80   193   262   192   264 0.94 Bacterial type II/III secretion system short domain
Secretin_N           PF03958.12    82 sp|P45758|GSPD_ECOLI -            650   8.1e-47  157.3   9.9   3   3   1.3e-19     1e-15   57.6   1.2     1    82   268   347   268   347 0.95 Bacterial type II/III secretion system short domain
T2SE                 PF00437.15   272 sp|P45759|GSPE_ECOLI -            493   6.1e-88  294.2   4.0   1   1   1.1e-90   6.1e-88  294.2   4.0     3   271   115   380   113   381 0.98 Type II/IV secretion system protein
AAA_23               PF13476.1    202 sp|P45759|GSPE_ECOLI -            493   1.5e-07   31.9   0.1   1   1   6.3e-10   3.5e-07   30.7   0.0     2    47   219   270   218   336 0.74 AAA domain
AAA_29               PF13555.1     62 sp|P45759|GSPE_ECOLI -            493   1.5e-05   24.3   0.1   1   1   6.7e-08   3.7e-05   23.1   0.1    22    50   242   270   231   275 0.82 P-loop containing region of AAA domain
AAA_19               PF13245.1     76 sp|P45759|GSPE_ECOLI -            493   2.3e-05   24.0   0.2   1   1   2.3e-07   0.00013   21.6   0.1     6    48   237   276   234   279 0.84 Part of AAA domain
Glyco_trans_4_4      PF13579.1    160 sp|P45759|GSPE_ECOLI -            493   4.4e-05   23.6   0.0   1   1   1.7e-07   9.6e-05   22.5   0.0    53   142   294   397   231   409 0.69 Glycosyl transferase 4-like domain
AAA_10               PF12846.2    304 sp|P45759|GSPE_ECOLI -            493   0.00029   20.3   0.0   1   1   1.5e-06   0.00082   18.8   0.0     4    47   245   290   242   324 0.85 AAA-like domain
AAA_18               PF13238.1    129 sp|P45759|GSPE_ECOLI -            493   0.00075   19.8   0.2   1   1   7.2e-06     0.004   17.4   0.0     1    68   245   313   245   380 0.80 AAA domain
AAA_16               PF13191.1    185 sp|P45759|GSPE_ECOLI -            493   0.00079   19.4   3.1   1   1   1.9e-06     0.001   19.0   0.0    22   106   240   338   229   399 0.63 AAA ATPase domain
AAA_17               PF13207.1    121 sp|P45759|GSPE_ECOLI -            493   0.00091   20.0   0.0   1   1   1.2e-05    0.0067   17.2   0.0     1    32   244   278   244   348 0.70 AAA domain
AAA_22               PF13401.1    131 sp|P45759|GSPE_ECOLI -            493    0.0015   18.7   0.0   1   1   9.5e-06    0.0052   16.9   0.0     4    49   242   282   238   328 0.81 AAA domain
FtsK_SpoIIIE         PF01580.13   205 sp|P45759|GSPE_ECOLI -            493    0.0018   17.8   0.0   1   1   6.6e-06    0.0036   16.7   0.0    37    84   239   285   220   307 0.80 FtsK/SpoIIIE family
AAA_5                PF07728.9    139 sp|P45759|GSPE_ECOLI -            493    0.0033   17.1   0.1   1   1   1.4e-05    0.0079   15.9   0.1     2    92   245   338   244   361 0.83 AAA domain (dynein-related subfamily)
AAA_30               PF13604.1    196 sp|P45759|GSPE_ECOLI -            493    0.0038   16.8   1.1   2   2   9.2e-05     0.051   13.1   0.0    10    50   234   274   226   280 0.85 AAA domain
MobB                 PF03205.9    140 sp|P45759|GSPE_ECOLI -            493    0.0046   16.6   0.0   1   1   2.1e-05     0.012   15.3   0.0     2    36   244   278   243   310 0.86 Molybdopterin guanine dinucleotide synthesis protein B
ABC_tran             PF00005.22   137 sp|P45759|GSPE_ECOLI -            493    0.0053   17.0   0.0   1   1   3.5e-05     0.019   15.2   0.0    13    51   244   282   238   369 0.72 ABC transporter
AAA_11               PF13086.1    236 sp|P45759|GSPE_ECOLI -            493      0.01   15.4   1.0   1   1   4.2e-05     0.023   14.2   0.1    16    94   241   320   225   481 0.70 AAA domain
AAA_14               PF13173.1    128 sp|P45759|GSPE_ECOLI -            493     0.011   15.6   0.0   1   1   4.5e-05     0.025   14.4   0.0     3    39   243   278   241   380 0.63 AAA domain
AAA_25               PF13481.1    194 sp|P45759|GSPE_ECOLI -            493     0.013   14.9   0.0   1   1   0.00011     0.063   12.6   0.0    32    58   241   267   227   320 0.89 AAA domain
Herpes_Helicase      PF02689.9    819 sp|P45759|GSPE_ECOLI -            493     0.026   12.2   0.1   1   1   9.1e-05      0.05   11.3   0.0    48    85   230   267   208   269 0.80 Helicase
NTPase_1             PF03266.10   168 sp|P45759|GSPE_ECOLI -            493     0.027   14.1   3.6   1   2   0.00039      0.21   11.2   0.2     2    27   245   270   244   277 0.88 NTPase
Arch_ATPase          PF01637.13   234 sp|P45759|GSPE_ECOLI -            493     0.031   13.9   0.0   1   1   0.00012     0.067   12.8   0.0    11    68   234   290   232   334 0.77 Archaeal ATPase
Rad17                PF03215.10   519 sp|P45759|GSPE_ECOLI -            493     0.035   12.8   0.1   1   1   0.00023      0.13   10.9   0.0    40    64   237   261   227   295 0.83 Rad17 cell cycle checkpoint protein
DUF87                PF01935.12   229 sp|P45759|GSPE_ECOLI -            493     0.047   13.5   0.5   1   1   0.00021      0.12   12.1   0.0    27    55   246   273   233   279 0.85 Domain of unknown function DUF87
AAA                  PF00004.24   132 sp|P45759|GSPE_ECOLI -            493     0.057   13.6   0.0   1   1   0.00025      0.14   12.4   0.0     1    67   245   320   245   346 0.65 ATPase family associated with various cellular activities (AAA)
Zeta_toxin           PF06414.7    201 sp|P45759|GSPE_ECOLI -            493     0.059   12.4   0.0   1   1   0.00027      0.15   11.1   0.0    18    48   244   276   234   279 0.89 Zeta toxin
AAA_21               PF13304.1    303 sp|P45759|GSPE_ECOLI -            493     0.079   12.9   0.1   1   1   0.00032      0.18   11.7   0.0     2    30   245   273   244   303 0.69 AAA domain
SMC_N                PF02463.14   220 sp|P45759|GSPE_ECOLI -            493       0.1   11.8   0.0   1   1   0.00032      0.17   11.0   0.0    20    48   238   266   231   325 0.88 RecF/RecN/SMC N terminal domain
T2SG                 PF08334.6    108 sp|P41442|GSPG_ECOLI -            145     9e-35  118.6   0.3   1   1   3.6e-38   1.1e-34  118.4   0.3     1   108    32   138    32   138 0.97 Type II secretion system (T2SS), protein G
N_methyl_2           PF13544.1     31 sp|P41442|GSPG_ECOLI -            145   8.2e-09   34.5   0.7   1   1   5.3e-12   1.6e-08   33.6   0.7     8    31     2    25     1    25 0.90 Type IV pilin N-term methylation site GFxxxE
N_methyl             PF07963.7     20 sp|P41442|GSPG_ECOLI -            145   2.2e-07   30.2   4.1   1   1   1.3e-10   3.7e-07   29.4   4.1     1    20     8    27     8    27 0.95 Prokaryotic N-terminal methylation motif
N_methyl_3           PF13633.1     22 sp|P41442|GSPG_ECOLI -            145   0.00017   21.2   6.9   1   1   1.1e-07   0.00032   20.3   6.9     1    22    10    31    10    31 0.97 Prokaryotic N-terminal methylation site
tRNA_anti-like       PF12869.2    144 sp|P41442|GSPG_ECOLI -            145     0.031   13.7   0.0   1   1   1.1e-05     0.032   13.7   0.0     5    42    13    49     1    91 0.84 tRNA_anti-like
T2SF                 PF00482.18   124 sp|P41441|GSPF_ECOLI -            398     2e-56  189.2   6.6   1   2   4.1e-34   1.5e-30  105.6   0.1     1   124    64   187    64   187 0.99 Type II secretion system (T2SS), protein F
T2SF                 PF00482.18   124 sp|P41441|GSPF_ECOLI -            398     2e-56  189.2   6.6   2   2   7.5e-28   2.8e-24   85.3   2.7     1   124   267   389   267   389 0.98 Type II secretion system (T2SS), protein F
UPF0093              PF03653.8    147 sp|P41441|GSPF_ECOLI -            398    0.0054   16.6   1.1   1   2   2.8e-05       0.1   12.5   0.1    48    92   154   198   142   214 0.86 Uncharacterised protein family (UPF0093)
GspH                 PF12019.3    114 sp|P41443|GSPH_ECOLI -            169   8.3e-09   35.6   0.0   1   1   3.6e-12   1.1e-08   35.2   0.0     2   107    44   147    43   156 0.73 Type II transport protein GspH
N_methyl_2           PF13544.1     31 sp|P41443|GSPH_ECOLI -            169   6.8e-07   28.4   1.0   1   1   4.3e-10   1.3e-06   27.6   1.0    11    30     2    21     1    22 0.93 Type IV pilin N-term methylation site GFxxxE
N_methyl             PF07963.7     20 sp|P41443|GSPH_ECOLI -            169   2.2e-06   27.0   2.0   1   1     2e-09     6e-06   25.6   2.0     1    19     5    23     5    24 0.94 Prokaryotic N-terminal methylation motif
N_methyl_3           PF13633.1     22 sp|P41443|GSPH_ECOLI -            169     0.075   12.9   9.1   1   1   5.5e-05      0.16   11.8   9.1     1    21     7    27     7    28 0.94 Prokaryotic N-terminal methylation site
Bundlin              PF05307.6     97 sp|P41443|GSPH_ECOLI -            169     0.097   12.5   0.0   1   1   4.5e-05      0.13   12.1   0.0    11    46     4    40     1    72 0.77 Bundlin
T2SI                 PF02501.12    81 sp|P45760|GSPI_ECOLI -            125   1.4e-12   47.3   0.1   1   1   6.5e-16   1.9e-12   46.9   0.1     1    77    39   114    39   118 0.92 Type II secretion system (T2SS), protein I
N_methyl_2           PF13544.1     31 sp|P45760|GSPI_ECOLI -            125   7.4e-06   25.2   0.9   1   1   5.1e-09   1.5e-05   24.2   0.5    11    29     2    20     1    22 0.90 Type IV pilin N-term methylation site GFxxxE
PulG                 PF11773.3     82 sp|P45760|GSPI_ECOLI -            125    0.0015   18.2   0.8   1   1   7.6e-07    0.0023   17.6   0.8     2    50     9    57     8    65 0.93 Type II secretory pathway pseudopilin
N_methyl             PF07963.7     20 sp|P45760|GSPI_ECOLI -            125     0.028   14.1   3.9   1   2   9.5e-06     0.028   14.1   3.9     1    19     5    23     5    27 0.89 Prokaryotic N-terminal methylation motif
N_methyl_3           PF13633.1     22 sp|P45760|GSPI_ECOLI -            125      0.12   12.2   6.3   1   1   8.2e-05      0.24   11.3   6.3     1    19     7    26     7    29 0.80 Prokaryotic N-terminal methylation site
T2SJ                 PF11612.3    169 sp|P45761|GSPJ_ECOLI -            195   1.2e-21   77.2   4.3   1   1   1.2e-24   2.2e-21   76.3   4.3     2   168    39   177    38   178 0.91 Type II secretion system (T2SS), protein J
N_methyl_2           PF13544.1     31 sp|P45761|GSPJ_ECOLI -            195   6.2e-08   31.7   0.6   1   1   6.7e-11   1.2e-07   30.8   0.6    10    31     2    23     1    23 0.93 Type IV pilin N-term methylation site GFxxxE
N_methyl             PF07963.7     20 sp|P45761|GSPJ_ECOLI -            195   3.3e-06   26.5   1.2   1   1   3.8e-09   7.1e-06   25.4   1.2     1    20     6    25     6    25 0.94 Prokaryotic N-terminal methylation motif
N_methyl_3           PF13633.1     22 sp|P45761|GSPJ_ECOLI -            195    0.0034   17.1   7.4   1   1   3.5e-06    0.0065   16.2   7.4     1    21     8    28     8    29 0.92 Prokaryotic N-terminal methylation site
IncA                 PF04156.9    191 sp|P45761|GSPJ_ECOLI -            195     0.007   15.9   0.5   1   1   6.7e-06     0.012   15.1   0.5    42    93    13    65     7    82 0.82 IncA protein
DUF4525              PF15027.1    139 sp|P45761|GSPJ_ECOLI -            195     0.024   14.1   0.0   1   1     2e-05     0.037   13.5   0.0    75   128    45    98    31   105 0.86 Domain of unknown function (DUF4525)
Col_cuticle_N        PF01484.12    53 sp|P45761|GSPJ_ECOLI -            195     0.072   12.7   0.3   1   1     7e-05      0.13   11.9   0.3    10    43    15    49    13    54 0.82 Nematode cuticle collagen N-terminal domain
Dfp1_Him1_M          PF08630.5    125 sp|P45761|GSPJ_ECOLI -            195     0.097   12.4   0.1   1   1   8.4e-05      0.15   11.8   0.1    10    85    41   111    30   121 0.80 Dfp1/Him1, central region
T2SK                 PF03934.8    280 sp|P45762|GSPK_ECOLI -            327   1.8e-66  224.1   4.1   1   1   1.4e-70   2.1e-66  223.9   4.1     3   277    32   315    30   319 0.93 Type II secretion system (T2SS), protein K
T2SL                 PF05134.8    230 sp|P45763|GSPL_ECOLI -            387     3e-57  193.4   2.5   1   1   7.1e-61   5.3e-57  192.6   2.5     1   230     6   233     6   233 0.98 Type II secretion system (T2SS), protein L
GspL_C               PF12693.2    158 sp|P45763|GSPL_ECOLI -            387   2.6e-35  121.5   3.9   1   1     6e-39   4.4e-35  120.7   3.9     6   157   241   385   237   387 0.97 GspL periplasmic domain
GSP_synth            PF03738.9     97 sp|P0AES0|GSP_ECOLI  -            619   1.5e-27   95.6   0.1   1   1   1.2e-30   4.4e-27   94.1   0.1     2    96   382   495   381   496 0.94 Glutathionylspermidine synthase preATP-grasp
CHAP                 PF05257.11   125 sp|P0AES0|GSP_ECOLI  -            619   1.9e-23   82.4   0.0   1   1   1.1e-26   4.1e-23   81.3   0.0     7   124    45   175    39   176 0.94 CHAP domain
CP_ATPgrasp_2        PF14403.1    445 sp|P0AES0|GSP_ECOLI  -            619   0.00082   18.1   0.0   1   1   3.7e-07    0.0014   17.3   0.0    51   244   256   441   215   458 0.77 Circularly permuted ATP-grasp type 2
T2SM                 PF04612.7    160 sp|P36678|GSPM_ECOLI -            153   2.1e-28   99.1   0.1   1   1   1.5e-32   2.3e-28   99.0   0.1     4   158     2   150     1   152 0.93 Type II secretion system (T2SS), protein M
GST_C                PF00043.20    95 sp|P0A9D2|GSTA_ECOLI -            201   3.5e-15   55.7   0.1   1   1   2.7e-18   5.7e-15   55.0   0.1     5    95   104   189   100   189 0.94 Glutathione S-transferase, C-terminal domain
GST_N_2              PF13409.1     70 sp|P0A9D2|GSTA_ECOLI -            201   2.1e-11   43.6   0.0   1   1   3.5e-14   7.3e-11   41.9   0.0     5    69    11    75     9    76 0.95 Glutathione S-transferase, N-terminal domain
GST_N_3              PF13417.1     75 sp|P0A9D2|GSTA_ECOLI -            201   3.4e-11   43.1   0.0   1   1   3.4e-14   7.2e-11   42.1   0.0    15    74    16    80    11    81 0.89 Glutathione S-transferase, N-terminal domain
GST_C_2              PF13410.1     69 sp|P0A9D2|GSTA_ECOLI -            201   8.3e-10   38.4   0.1   1   1   5.8e-13   1.2e-09   37.8   0.1     6    69   124   184    71   184 0.90 Glutathione S-transferase, C-terminal domain
GST_N                PF02798.15    76 sp|P0A9D2|GSTA_ECOLI -            201   9.2e-09   35.3   0.0   1   1   1.3e-11   2.7e-08   33.8   0.0     3    76     1    75     1    75 0.94 Glutathione S-transferase, N-terminal domain
GST_C_3              PF14497.1     99 sp|P0A9D2|GSTA_ECOLI -            201   9.9e-09   35.5   0.1   1   1   7.2e-12   1.5e-08   34.9   0.1    35    99   124   187    90   187 0.90 Glutathione S-transferase, C-terminal domain
Glutaredoxin2_C      PF04399.8    132 sp|P0A9D2|GSTA_ECOLI -            201   0.00064   19.3   0.0   1   1     5e-07    0.0011   18.6   0.0    58   124   123   191   118   193 0.88 Glutaredoxin 2, C terminal domain
GST_N_3              PF13417.1     75 sp|P0ACA7|GSTB_ECOLI -            208   8.2e-15   54.7   0.0   1   1   8.2e-18   1.5e-14   53.9   0.0     1    74     4    82     4    83 0.88 Glutathione S-transferase, N-terminal domain
GST_N                PF02798.15    76 sp|P0ACA7|GSTB_ECOLI -            208   2.6e-13   49.9   0.0   1   1   2.1e-16   3.8e-13   49.3   0.0    10    75     8    76     1    77 0.91 Glutathione S-transferase, N-terminal domain
GST_C                PF00043.20    95 sp|P0ACA7|GSTB_ECOLI -            208   1.6e-12   47.2   0.0   1   1   2.9e-15   5.4e-12   45.5   0.0    15    95   121   197    89   197 0.90 Glutathione S-transferase, C-terminal domain
GST_N_2              PF13409.1     70 sp|P0ACA7|GSTB_ECOLI -            208   2.4e-11   43.4   0.0   1   1   2.4e-14   4.4e-11   42.6   0.0     5    69    13    77     9    78 0.87 Glutathione S-transferase, N-terminal domain
GST_C_2              PF13410.1     69 sp|P0ACA7|GSTB_ECOLI -            208   3.3e-10   39.6   0.2   1   1   4.1e-13   7.6e-10   38.5   0.2     2    68   128   191   127   192 0.93 Glutathione S-transferase, C-terminal domain
GST_C_3              PF14497.1     99 sp|P0ACA7|GSTB_ECOLI -            208   0.00024   21.4   0.1   1   1   2.6e-07   0.00048   20.5   0.1    11    97    97   193    84   195 0.74 Glutathione S-transferase, C-terminal domain
MetRS-N              PF09635.5    122 sp|P0ACA7|GSTB_ECOLI -            208    0.0018   18.6   0.0   1   1   1.6e-06     0.003   17.9   0.0    29    64    46    81    39    84 0.88 MetRS-N binding domain
DUF917               PF06032.7    353 sp|P0ACA7|GSTB_ECOLI -            208    0.0062   15.1   0.0   1   1   4.2e-06    0.0077   14.8   0.0   169   262    69   168    39   172 0.87 Protein of unknown function (DUF917)
NIF3                 PF01784.13   242 sp|P0AFP6|GTPC1_ECOLI -            247   1.1e-56  192.1   0.0   1   1     9e-61   1.3e-56  191.8   0.0     2   240     6   235     5   238 0.95 NIF3 (NGG1p interacting factor 3)
GtrA                 PF04138.9    117 sp|P77682|GTRA_ECOLI -            120   3.6e-12   46.2  17.7   1   1   9.3e-16   1.4e-11   44.3  18.2     1   117     7   116     7   116 0.88 GtrA-like protein
Glycos_transf_2      PF00535.21   169 sp|P77293|GTRB_ECOLI -            306   1.4e-27   96.4   0.1   1   1   6.4e-31   1.9e-27   96.0   0.1     1   167     4   166     4   168 0.97 Glycosyl transferase family 2
Glyco_tranf_2_3      PF13641.1    228 sp|P77293|GTRB_ECOLI -            306   5.8e-05   23.0   0.0   1   1     3e-08   8.8e-05   22.4   0.0     2    96     2    94     1   180 0.90 Glycosyltransferase like family 2
Glyco_tranf_2_2      PF10111.4    281 sp|P77293|GTRB_ECOLI -            306    0.0032   16.6   0.0   1   1   1.5e-06    0.0046   16.0   0.0     1   110     4   106     4   118 0.80 Glycosyltransferase like family 2
DUF1706              PF08020.6    166 sp|P77293|GTRB_ECOLI -            306      0.05   13.1   0.0   1   1   2.8e-05     0.082   12.4   0.0    90   147   135   196   130   206 0.80 Protein of unknown function (DUF1706)
ATP1G1_PLM_MAT8      PF02038.11    50 sp|P77293|GTRB_ECOLI -            306      0.23   10.4   0.1   1   1   7.8e-05      0.23   10.4   0.1    17    34   232   249   227   250 0.92 ATP1G1/PLM/MAT8 family
IMPDH                PF00478.20   352 sp|P60560|GUAC_ECOLI -            347  3.4e-114  381.4   0.2   1   1  5.7e-118  4.2e-114  381.1   0.2     3   347     9   342     7   346 0.93 IMP dehydrogenase / GMP reductase domain
FMN_dh               PF01070.13   357 sp|P60560|GUAC_ECOLI -            347    0.0014   17.5   1.0   2   2   1.8e-07    0.0014   17.5   1.0   265   311   197   244   130   262 0.76 FMN-dependent dehydrogenase
Amidohydro_1         PF01979.15   333 sp|P76641|GUAD_ECOLI -            439   8.1e-61  206.4   0.0   1   1   3.5e-64     1e-60  206.1   0.0     2   332    74   391    73   392 0.97 Amidohydrolase family
Amidohydro_4         PF13147.1    304 sp|P76641|GUAD_ECOLI -            439   4.9e-11   43.1   0.0   1   2   6.6e-08   0.00019   21.5   0.0     1    58    68   148    68   234 0.75 Amidohydrolase
Amidohydro_4         PF13147.1    304 sp|P76641|GUAD_ECOLI -            439   4.9e-11   43.1   0.0   2   2   2.2e-07   0.00065   19.8   0.0   237   304   320   389   260   389 0.84 Amidohydrolase
Amidohydro_5         PF13594.1     68 sp|P76641|GUAD_ECOLI -            439   1.7e-09   37.3   0.0   1   1     2e-12   5.8e-09   35.6   0.0     2    67    41   137    40   138 0.68 Amidohydrolase
Amidohydro_3         PF07969.6    404 sp|P76641|GUAD_ECOLI -            439   1.3e-08   34.4   1.2   2   2   5.5e-09   1.6e-05   24.2   0.0   314   404   308   390   114   390 0.89 Amidohydrolase family
Peripla_BP_1         PF00532.16   279 sp|P76641|GUAD_ECOLI -            439     0.046   12.9   0.0   1   1   2.6e-05     0.077   12.1   0.0    51   122   130   206   117   248 0.82 Periplasmic binding proteins and sugar binding domain of LacI family
MFS_1                PF07690.11   352 sp|Q46916|GUDP_ECOLI -            450   1.7e-54  184.8  52.0   1   2   4.2e-51   1.6e-47  161.9  27.9     1   273    25   318    25   325 0.86 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|Q46916|GUDP_ECOLI -            450   1.7e-54  184.8  52.0   2   2   1.2e-10   4.4e-07   28.9  16.6    60   172   325   435   319   449 0.86 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|Q46916|GUDP_ECOLI -            450   7.8e-08   31.3  48.4   1   1   1.7e-10   6.4e-07   28.2  48.4    16   435    21   434    10   440 0.76 Sugar (and other) transporter
MFS_2                PF13347.1    428 sp|Q46916|GUDP_ECOLI -            450   4.7e-07   28.5  34.3   1   3   8.2e-05       0.3    9.4   3.3   267   331    62   130    12   142 0.77 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|Q46916|GUDP_ECOLI -            450   4.7e-07   28.5  34.3   2   3   5.1e-10   1.9e-06   26.5  15.4   150   344   156   377   145   382 0.89 MFS/sugar transport protein
DUF2407_C            PF13373.1    140 sp|Q46916|GUDP_ECOLI -            450     0.044   13.6   3.6   2   2     2e-05     0.074   12.9   2.1    93   137   299   342   280   345 0.92 DUF2407 C-terminal domain
MR_MLE_C             PF13378.1    111 sp|Q46915|GUDX_ECOLI -            446   2.1e-26   92.0   0.3   1   1   1.2e-29   4.3e-26   91.0   0.3     1   111   288   400   288   400 0.84 Enolase C-terminal domain-like
MR_MLE               PF01188.16    67 sp|Q46915|GUDX_ECOLI -            446   2.2e-14   53.7   0.3   1   2   8.5e-17   3.2e-13   50.0   0.0     2    66   219   287   218   288 0.91 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
MR_MLE_N             PF02746.11   117 sp|Q46915|GUDX_ECOLI -            446   1.1e-08   35.0   0.2   1   1   5.4e-12     2e-08   34.2   0.2    30   117    39   136    17   136 0.86 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
P5CR_dimer           PF14748.1    107 sp|Q46915|GUDX_ECOLI -            446      0.14   12.1   0.0   1   1   8.3e-05      0.31   11.0   0.0    11    70    26    83    22   117 0.85 Pyrroline-5-carboxylate reductase dimerisation
MR_MLE_C             PF13378.1    111 sp|P0AES2|GUDD_ECOLI -            446   3.9e-27   94.4   0.1   1   1   4.2e-30   1.5e-26   92.4   0.1     1   111   289   401   289   401 0.84 Enolase C-terminal domain-like
MR_MLE               PF01188.16    67 sp|P0AES2|GUDD_ECOLI -            446   3.1e-10   40.4   0.0   1   1   2.9e-13   1.1e-09   38.7   0.0     4    66   222   288   219   289 0.89 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
MR_MLE_N             PF02746.11   117 sp|P0AES2|GUDD_ECOLI -            446    0.0092   15.9   0.0   1   1   4.6e-06     0.017   15.0   0.0    31   117    41   137    29   137 0.82 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
Radical_SAM          PF04055.16   166 sp|P0AES2|GUDD_ECOLI -            446     0.056   13.6   0.0   1   2   0.00014      0.51   10.4   0.0    17    88   175   241   163   263 0.84 Radical SAM superfamily
Glyco_hydro_8        PF01270.12   342 sp|P37651|GUN_ECOLI  -            368  1.5e-120  402.0   3.1   1   1  1.2e-124  1.8e-120  401.8   3.1     1   342     1   346     1   346 0.98 Glycosyl hydrolases family 8
SIS                  PF01380.17   131 sp|P17115|GUTQ_ECOLI -            321   4.2e-27   94.3   0.0   1   1   1.5e-30   7.4e-27   93.5   0.0     2   130    39   169    38   170 0.98 SIS domain
CBS                  PF00571.23    57 sp|P17115|GUTQ_ECOLI -            321   2.4e-15   56.0   0.0   2   3   1.7e-09   8.4e-06   25.4   0.0     1    56   199   256   199   257 0.95 CBS domain
CBS                  PF00571.23    57 sp|P17115|GUTQ_ECOLI -            321   2.4e-15   56.0   0.0   3   3   1.7e-09   8.5e-06   25.4   0.0    19    51   283   315   265   319 0.86 CBS domain
Thiolase_C           PF02803.13   123 sp|P17115|GUTQ_ECOLI -            321     0.035   13.5   0.4   1   2   3.5e-05      0.17   11.2   0.1    79   103   185   209   176   223 0.82 Thiolase, C-terminal domain
DNA_topoisoIV        PF00521.15   426 sp|P0AES4|GYRA_ECOLI -            875  4.8e-153  510.0   0.0   1   1  8.2e-157  6.1e-153  509.6   0.0     1   425    32   506    32   507 0.98 DNA gyrase/topoisomerase IV, subunit A
DNA_gyraseA_C        PF03989.8     48 sp|P0AES4|GYRA_ECOLI -            875   9.5e-67  220.1  16.1   2   7   3.9e-11   2.9e-07   29.6   0.0     1    46   538   583   538   585 0.91 DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C        PF03989.8     48 sp|P0AES4|GYRA_ECOLI -            875   9.5e-67  220.1  16.1   3   7   5.8e-11   4.3e-07   29.1   0.0     1    45   588   635   588   638 0.87 DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C        PF03989.8     48 sp|P0AES4|GYRA_ECOLI -            875   9.5e-67  220.1  16.1   4   7     7e-08   0.00052   19.2   0.2     2    45   645   686   645   689 0.92 DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C        PF03989.8     48 sp|P0AES4|GYRA_ECOLI -            875   9.5e-67  220.1  16.1   5   7   9.2e-23   6.8e-19   66.9   0.5     1    48   692   739   692   739 0.98 DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C        PF03989.8     48 sp|P0AES4|GYRA_ECOLI -            875   9.5e-67  220.1  16.1   6   7     2e-13   1.5e-09   36.9   0.1     3    47   744   789   743   790 0.95 DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C        PF03989.8     48 sp|P0AES4|GYRA_ECOLI -            875   9.5e-67  220.1  16.1   7   7   9.2e-16   6.8e-12   44.5   0.3     1    47   793   839   793   840 0.96 DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseB          PF00204.20   173 sp|P0AES6|GYRB_ECOLI -            804   1.7e-62  209.6   0.0   1   1   1.7e-65   3.7e-62  208.5   0.0     1   173   221   391   221   391 0.99 DNA gyrase B
DNA_gyraseB_C        PF00986.16    65 sp|P0AES6|GYRB_ECOLI -            804   1.3e-30  104.9   0.2   1   1   1.6e-33   3.4e-30  103.5   0.2     3    65   731   793   729   793 0.96 DNA gyrase B subunit, carboxyl terminus
Toprim               PF01751.17   100 sp|P0AES6|GYRB_ECOLI -            804   6.7e-27   93.3   0.0   1   1     1e-29   2.1e-26   91.7   0.0     1   100   419   532   419   532 0.97 Toprim domain
HATPase_c            PF02518.21   111 sp|P0AES6|GYRB_ECOLI -            804   1.2e-20   73.2   0.2   1   1   1.2e-23   2.5e-20   72.2   0.2     2   110    32   173    31   174 0.95 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3          PF13589.1    137 sp|P0AES6|GYRB_ECOLI -            804    0.0011   18.6   0.1   1   1   1.3e-06    0.0027   17.3   0.1     5    47    38    80    33   142 0.73 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Toprim_4             PF13662.1     81 sp|P0AES6|GYRB_ECOLI -            804     0.079   12.9   0.0   1   1   0.00018      0.38   10.8   0.0    20    60   467   504   418   511 0.84 Toprim domain
adh_short            PF00106.20   167 sp|P0CI31|HCAB_ECOLI -            270   2.2e-22   79.7   0.3   1   1   9.8e-26   3.6e-22   79.0   0.3     2   166     8   174     7   175 0.87 short chain dehydrogenase
adh_short_C2         PF13561.1    241 sp|P0CI31|HCAB_ECOLI -            270   4.2e-13   49.6   0.0   1   1   1.3e-16   4.7e-13   49.4   0.0     6   179    16   186    13   257 0.80 Enoyl-(Acyl carrier protein) reductase
KR                   PF08659.5    181 sp|P0CI31|HCAB_ECOLI -            270   2.3e-06   27.3   0.0   1   1   1.6e-09     6e-06   26.0   0.0     4   103    10   103     8   122 0.84 KR domain
Epimerase            PF01370.16   236 sp|P0CI31|HCAB_ECOLI -            270     0.021   14.2   0.0   1   1   7.9e-06     0.029   13.7   0.0     1   123     9   151     9   181 0.69 NAD dependent epimerase/dehydratase family
Rieske               PF00355.21    97 sp|P0ABW0|HCAC_ECOLI -            106   1.6e-17   62.8   0.0   1   1   2.4e-21   1.8e-17   62.6   0.0     3    96     4    94     2    95 0.85 Rieske [2Fe-2S] domain
Rieske_2             PF13806.1    104 sp|P0ABW0|HCAC_ECOLI -            106   2.1e-12   46.6   0.0   1   1   3.3e-16   2.4e-12   46.4   0.0    18   103    17    99     4   100 0.82 Rieske-like [2Fe-2S] domain
Pyr_redox_2          PF07992.9    201 sp|P77650|HCAD_ECOLI -            400     1e-28  100.5   0.0   1   1     2e-30   1.2e-27   97.0   0.0     2   197     6   277     5   281 0.89 Pyridine nucleotide-disulphide oxidoreductase
Reductase_C          PF14759.1     85 sp|P77650|HCAD_ECOLI -            400   2.8e-22   78.8   0.1   1   1   1.2e-24   7.3e-22   77.4   0.1     1    84   318   400   318   400 0.97 Reductase C-terminal
Pyr_redox            PF00070.22    80 sp|P77650|HCAD_ECOLI -            400   9.1e-20   70.8   1.2   2   2   1.1e-19   6.9e-17   61.6   0.1     1    77   146   222   146   226 0.92 Pyridine nucleotide-disulphide oxidoreductase
HI0933_like          PF03486.9    409 sp|P77650|HCAD_ECOLI -            400   3.7e-09   35.5   7.4   3   4   8.2e-06    0.0051   15.3   0.5     2    33   146   177   145   184 0.90 HI0933-like protein
HI0933_like          PF03486.9    409 sp|P77650|HCAD_ECOLI -            400   3.7e-09   35.5   7.4   4   4   0.00047      0.29    9.5   0.0   111   163   188   238   182   246 0.87 HI0933-like protein
Lycopene_cycl        PF05834.7    374 sp|P77650|HCAD_ECOLI -            400   1.4e-08   34.1   2.4   1   3   0.00054      0.33    9.8   0.0     2    73     6    79     5    87 0.86 Lycopene cyclase protein
Lycopene_cycl        PF05834.7    374 sp|P77650|HCAD_ECOLI -            400   1.4e-08   34.1   2.4   2   3   0.00029      0.18   10.6   0.4     2    36   147   179   146   184 0.80 Lycopene cyclase protein
Lycopene_cycl        PF05834.7    374 sp|P77650|HCAD_ECOLI -            400   1.4e-08   34.1   2.4   3   3   0.00011     0.068   12.0   0.0    93   158   192   259   187   270 0.78 Lycopene cyclase protein
DAO                  PF01266.19   358 sp|P77650|HCAD_ECOLI -            400   1.6e-07   30.6  13.2   3   4   5.5e-06    0.0034   16.3   1.0     2    29   147   174   146   178 0.96 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|P77650|HCAD_ECOLI -            400   1.6e-07   30.6  13.2   4   4   1.3e-05    0.0083   15.0   0.1   149   210   188   249   179   268 0.84 FAD dependent oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P77650|HCAD_ECOLI -            400   2.4e-07   31.0   0.4   2   4   0.00087      0.54   10.2   0.0    97   184    73   161    55   174 0.55 Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8        PF13450.1     68 sp|P77650|HCAD_ECOLI -            400   7.2e-07   29.1   1.2   1   2    0.0003      0.18   11.8   0.1     1    25     8    34     8    40 0.84 NAD(P)-binding Rossmann-like domain
NAD_binding_8        PF13450.1     68 sp|P77650|HCAD_ECOLI -            400   7.2e-07   29.1   1.2   2   2   2.4e-05     0.015   15.3   0.0     1    33   149   181   149   208 0.90 NAD(P)-binding Rossmann-like domain
NAD_binding_7        PF13241.1    103 sp|P77650|HCAD_ECOLI -            400   1.9e-06   28.0   0.1   2   2   2.9e-05     0.018   15.2   0.2     7    40   144   177   142   262 0.71 Putative NAD(P)-binding
K_oxygenase          PF13434.1    341 sp|P77650|HCAD_ECOLI -            400   1.1e-05   24.5   0.1   1   3   0.00057      0.35    9.7   0.0   189   226     2    39     1    57 0.79 L-lysine 6-monooxygenase (NADPH-requiring)
K_oxygenase          PF13434.1    341 sp|P77650|HCAD_ECOLI -            400   1.1e-05   24.5   0.1   2   3   0.00042      0.26   10.1   0.0   142   217    95   171    71   183 0.75 L-lysine 6-monooxygenase (NADPH-requiring)
Trp_halogenase       PF04820.9    454 sp|P77650|HCAD_ECOLI -            400    0.0021   16.7   6.3   1   3   0.00013     0.079   11.5   0.1     2    22     6    26     5    38 0.87 Tryptophan halogenase
GIDA                 PF01134.17   392 sp|P77650|HCAD_ECOLI -            400    0.0023   16.8   1.9   2   2    0.0012      0.77    8.5   0.8     2    29   147   174   146   187 0.87 Glucose inhibited division protein A
3HCDH_N              PF02737.13   180 sp|P77650|HCAD_ECOLI -            400    0.0029   17.3   0.2   1   1   4.6e-06    0.0029   17.3   0.2     2    36   147   181   146   236 0.76 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Thi4                 PF01946.12   230 sp|P77650|HCAD_ECOLI -            400    0.0095   15.0   1.2   2   3   0.00037      0.23   10.5   0.1    17    49   144   176   135   183 0.88 Thi4 family
TrkA_N               PF02254.13   116 sp|P77650|HCAD_ECOLI -            400     0.018   15.0   6.0   2   3   0.00011     0.069   13.1   0.3     1    29   147   175   147   182 0.90 TrkA-N domain
2-Hacid_dh_C         PF02826.14   178 sp|P77650|HCAD_ECOLI -            400      0.02   14.0   0.7   1   1   0.00017       0.1   11.7   0.1    36    66   144   174   129   189 0.88 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
XdhC_C               PF13478.1    136 sp|P77650|HCAD_ECOLI -            400     0.026   14.8   0.1   2   2   0.00059      0.36   11.1   0.0     1    32   147   178   147   249 0.82 XdhC Rossmann domain
Amino_oxidase        PF01593.19   450 sp|P77650|HCAD_ECOLI -            400       0.1   11.6   0.1   1   1   0.00028      0.17   10.8   0.1   191   265   164   241    86   250 0.76 Flavin containing amine oxidoreductase
FAD_binding_2        PF00890.19   417 sp|P77650|HCAD_ECOLI -            400      0.18   10.6  12.0   2   2   0.00043      0.27   10.0   1.9     2    33   147   178   146   184 0.90 FAD binding domain
Ring_hydroxyl_A      PF00848.14   209 sp|P0ABR5|HCAE_ECOLI -            453   2.2e-32  112.4   0.0   1   1   4.1e-36     3e-32  111.9   0.0     2   208   164   433   163   435 0.90 Ring hydroxylating alpha subunit (catalytic domain)
Rieske               PF00355.21    97 sp|P0ABR5|HCAE_ECOLI -            453   3.3e-24   84.2   0.1   1   1     8e-28   5.9e-24   83.4   0.1     1    86    42   125    42   141 0.90 Rieske [2Fe-2S] domain
Ring_hydroxyl_B      PF00866.13   145 sp|Q47140|HCAF_ECOLI -            172   2.6e-47  160.1   5.2   1   1     4e-51     3e-47  159.9   5.2     1   145    19   166    19   166 0.98 Ring hydroxylating beta subunit
Spore_III_AB         PF09548.5    170 sp|Q47140|HCAF_ECOLI -            172     0.096   12.4   0.0   1   1   1.8e-05      0.13   11.9   0.0    33    90    29    88    27   109 0.82 Stage III sporulation protein AB (spore_III_AB)
MFS_1                PF07690.11   352 sp|Q47142|HCAT_ECOLI -            379   1.1e-13   50.6  60.6   1   2   1.4e-14   6.7e-11   41.4  46.2     1   324     9   316     9   318 0.81 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|Q47142|HCAT_ECOLI -            379   1.1e-13   50.6  60.6   2   2   4.6e-08   0.00023   20.0  22.9    27   166   232   370   228   378 0.83 Major Facilitator Superfamily
LacY_symp            PF01306.14   413 sp|Q47142|HCAT_ECOLI -            379   7.9e-13   47.7  27.3   1   1   3.1e-16   1.5e-12   46.7  27.3    12   390     9   366     4   372 0.78 LacY proton/sugar symporter
MFS_1_like           PF12832.2     77 sp|Q47142|HCAT_ECOLI -            379   1.5e-07   31.0  10.2   1   2   1.8e-09   8.9e-06   25.4   3.8     3    61     7    65     5    89 0.84 MFS_1 like family
DJ-1_PfpI            PF01965.19   147 sp|P31658|HCHA_ECOLI -            283   2.7e-12   46.3   0.0   1   1   6.1e-16   4.5e-12   45.6   0.0    22   143   125   274   108   278 0.81 DJ-1/PfpI family
DUF1786              PF08735.5    254 sp|P31658|HCHA_ECOLI -            283     0.039   13.1   0.0   1   1   9.1e-06     0.068   12.3   0.0   184   240   111   166   106   173 0.79 Putative pyruvate format-lyase activating enzyme (DUF1786)
Prismane             PF03063.15   516 sp|P75825|HCP_ECOLI  -            550  3.2e-155  517.4   0.0   1   1  2.4e-159  3.6e-155  517.2   0.0     1   516     1   548     1   548 0.98 Prismane/CO dehydrogenase family
Fer2                 PF00111.22    78 sp|P75824|HCR_ECOLI  -            322   1.3e-14   53.6   2.5   1   1   7.4e-18   2.8e-14   52.6   2.5     8    77   248   315   242   316 0.87 2Fe-2S iron-sulfur cluster binding domain
FAD_binding_6        PF00970.19    99 sp|P75824|HCR_ECOLI  -            322   2.8e-11   43.3   0.0   1   1   1.4e-14     5e-11   42.5   0.0     2    98    12   105    11   106 0.88 Oxidoreductase FAD-binding domain
NAD_binding_1        PF00175.16   109 sp|P75824|HCR_ECOLI  -            322   2.3e-08   34.5   0.0   1   1   1.2e-11   4.5e-08   33.6   0.0     1   107   116   210   116   212 0.81 Oxidoreductase NAD-binding domain
Fer2_3               PF13085.1    110 sp|P75824|HCR_ECOLI  -            322      0.35   10.7   1.9   1   1   0.00018      0.67    9.8   1.9    50    79   271   301   256   314 0.79 2Fe-2S iron-sulfur cluster binding domain
Bac_DnaA             PF00308.13   219 sp|P69931|HDA_ECOLI  -            233   1.7e-16   60.5   0.0   1   1     3e-19   2.2e-15   56.8   0.0     6   212    18   211    14   217 0.87 Bacterial dnaA  protein
AAA_16               PF13191.1    185 sp|P69931|HDA_ECOLI  -            233    0.0017   18.3   1.8   1   1   1.8e-06     0.013   15.4   1.8    12   163    30   215    27   227 0.65 AAA ATPase domain
HdeA                 PF06411.6     94 sp|P0AET2|HDEB_ECOLI -            108   1.4e-28   98.6   0.5   1   1     1e-32   1.6e-28   98.5   0.5     4    93     9    97     6    98 0.90 HdeA/HdeB family
HdeA                 PF06411.6     94 sp|P0AES9|HDEA_ECOLI -            110   2.8e-26   91.3   0.2   1   1   2.2e-30   3.3e-26   91.0   0.2     4    94     6    98     3    98 0.91 HdeA/HdeB family
adh_short_C2         PF13561.1    241 sp|P0AET8|HDHA_ECOLI -            255   3.2e-40  138.3   0.1   1   1   1.6e-43     4e-40  138.1   0.1     6   239    21   249    18   251 0.92 Enoyl-(Acyl carrier protein) reductase
adh_short            PF00106.20   167 sp|P0AET8|HDHA_ECOLI -            255   1.4e-33  116.1   0.6   1   1     1e-36   2.5e-33  115.3   0.5     1   165    12   176    12   178 0.94 short chain dehydrogenase
KR                   PF08659.5    181 sp|P0AET8|HDHA_ECOLI -            255   2.7e-08   33.6   0.2   1   1   1.6e-11   3.9e-08   33.1   0.2     4   161    15   171    13   178 0.89 KR domain
3HCDH_N              PF02737.13   180 sp|P0AET8|HDHA_ECOLI -            255    0.0001   22.0   0.3   1   1   7.9e-08    0.0002   21.0   0.3     4    46    16    58    13    95 0.77 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
DUF1598              PF07643.6     84 sp|P0AET8|HDHA_ECOLI -            255     0.055   13.5   0.0   1   1   8.2e-05       0.2   11.6   0.0    14    52   151   189   143   197 0.83 Protein of unknown function (DUF1598)
THF_DHG_CYH_C        PF02882.14   161 sp|P0AET8|HDHA_ECOLI -            255     0.057   12.4   0.1   1   2   6.1e-05      0.15   11.1   0.0    28    76     3    51     1    57 0.87 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
Helicase_IV_N        PF12462.3    166 sp|P15038|HELD_ECOLI -            684   2.3e-62  209.5   1.9   1   1   1.4e-65   2.3e-62  209.5   1.9     1   166     1   165     1   165 1.00 DNA helicase IV / RNA helicase N terminal
UvrD-helicase        PF00580.16   315 sp|P15038|HELD_ECOLI -            684   3.4e-44  151.4   0.0   1   1   4.6e-47   7.6e-44  150.2   0.0     1   314   197   490   197   491 0.84 UvrD/REP helicase N-terminal domain
UvrD_C               PF13361.1    351 sp|P15038|HELD_ECOLI -            684   2.1e-14   53.7   0.1   1   1   7.5e-17   1.2e-13   51.2   0.0   238   350   544   663   479   664 0.77 UvrD-like helicase C-terminal domain
AAA_19               PF13245.1     76 sp|P15038|HELD_ECOLI -            684     6e-14   51.5   0.8   1   1     1e-16   1.7e-13   50.0   0.8     6    75   204   278   200   279 0.84 Part of AAA domain
UvrD_C_2             PF13538.1    104 sp|P15038|HELD_ECOLI -            684     1e-09   38.4   0.1   1   1   3.1e-12     5e-09   36.2   0.1    50   102   583   658   529   660 0.79 UvrD-like helicase C-terminal domain
AAA_30               PF13604.1    196 sp|P15038|HELD_ECOLI -            684   2.1e-06   27.4   0.3   1   2   3.9e-08   6.4e-05   22.6   0.1     3    82   198   284   196   310 0.74 AAA domain
Viral_helicase1      PF01443.13   234 sp|P15038|HELD_ECOLI -            684   6.2e-05   22.6   0.0   2   2     6e-06    0.0099   15.4   0.0    64   229   432   656   381   658 0.80 Viral (Superfamily 1) RNA helicase
AAA_12               PF13087.1    200 sp|P15038|HELD_ECOLI -            684    0.0004   19.8   0.0   2   2   1.4e-06    0.0024   17.3   0.0   111   198   559   662   532   664 0.75 AAA domain
GlutR_N              PF05201.10   152 sp|P0A6X1|HEM1_ECOLI -            418   4.5e-57  191.9   0.1   1   1     7e-60   1.1e-56  190.5   0.0     1   152     6   157     6   157 0.99 Glutamyl-tRNAGlu reductase, N-terminal domain
Shikimate_DH         PF01488.15   135 sp|P0A6X1|HEM1_ECOLI -            418   3.3e-43  147.0   0.4   1   1   3.5e-46   5.8e-43  146.2   0.4     2   135   172   306   171   306 0.96 Shikimate / quinate 5-dehydrogenase
GlutR_dimer          PF00745.15   101 sp|P0A6X1|HEM1_ECOLI -            418   1.2e-27   95.8   2.9   1   1     7e-31   1.2e-27   95.8   2.9     2   100   320   417   319   418 0.97 Glutamyl-tRNAGlu reductase, dimerisation domain
OCD_Mu_crystall      PF02423.10   314 sp|P0A6X1|HEM1_ECOLI -            418   0.00016   20.5   0.6   1   2   9.5e-08   0.00016   20.5   0.6   130   216   183   263   156   266 0.87 Ornithine cyclodeaminase/mu-crystallin family
F420_oxidored        PF03807.12    96 sp|P0A6X1|HEM1_ECOLI -            418   0.00019   21.7   0.8   1   1   1.2e-07   0.00019   21.7   0.8     4    67   187   248   183   282 0.80 NADP oxidoreductase coenzyme F420-dependent
Saccharop_dh         PF03435.13   386 sp|P0A6X1|HEM1_ECOLI -            418     0.017   14.1   0.1   1   1   1.8e-05      0.03   13.3   0.1     1    56   185   234   185   267 0.78 Saccharopine dehydrogenase
GFO_IDH_MocA         PF01408.17   120 sp|P0A6X1|HEM1_ECOLI -            418     0.031   14.8   0.6   1   1   6.6e-05      0.11   13.0   0.0     2    84   184   267   183   277 0.82 Oxidoreductase family, NAD-binding Rossmann fold
DUF2338              PF10100.4    429 sp|P0A6X1|HEM1_ECOLI -            418      0.11   10.8   1.0   1   2   8.2e-05      0.13   10.5   0.1     3    47   184   228   182   245 0.88 Uncharacterized protein conserved in bacteria (DUF2338)
UPF0181              PF03701.9     52 sp|P0A6X1|HEM1_ECOLI -            418      0.26   10.5   0.1   1   1   0.00016      0.26   10.5   0.1    29    48   189   208   188   212 0.87 Uncharacterised protein family (UPF0181)
ALAD                 PF00490.16   324 sp|P0ACB2|HEM2_ECOLI -            324    2e-136  454.1   0.1   1   1  3.1e-140  2.3e-136  453.9   0.1     3   322     5   319     3   321 0.99 Delta-aminolevulinic acid dehydratase
ComA                 PF02679.10   245 sp|P0ACB2|HEM2_ECOLI -            324     0.074   12.0   0.1   1   2   2.2e-05      0.17   10.8   0.0    98   146    43    91    35   121 0.82 (2R)-phospho-3-sulfolactate synthase (ComA)
Porphobil_deam       PF01379.15   215 sp|P06983|HEM3_ECOLI -            313   4.3e-92  306.8   0.0   1   1   7.1e-96   5.3e-92  306.5   0.0     2   214     6   216     5   217 0.99 Porphobilinogen deaminase, dipyromethane cofactor binding domain
Porphobil_deamC      PF03900.10    74 sp|P06983|HEM3_ECOLI -            313   1.2e-25   89.4   0.1   1   1   3.1e-29   2.3e-25   88.4   0.1     1    74   225   296   225   296 0.97 Porphobilinogen deaminase, C-terminal domain
HEM4                 PF02602.10   231 sp|P09126|HEM4_ECOLI -            246   1.5e-39  135.5   0.0   1   1   1.2e-43   1.7e-39  135.4   0.0     2   230    14   242    13   243 0.92 Uroporphyrinogen-III synthase HemD
Coprogen_oxidas      PF01218.13   296 sp|P36553|HEM6_ECOLI -            299  5.3e-147  488.0   0.1   1   1    4e-151    6e-147  487.9   0.1     2   296     7   299     6   299 0.99 Coproporphyrinogen III oxidase
Ferrochelatase       PF00762.14   316 sp|P23871|HEMH_ECOLI -            320  2.2e-107  358.7   0.0   1   1  8.1e-111  2.4e-107  358.5   0.0     1   313     5   317     5   320 0.98 Ferrochelatase
CbiX                 PF01903.12   105 sp|P23871|HEMH_ECOLI -            320   1.1e-06   28.6   0.0   1   2   2.9e-07   0.00086   19.3   0.0    16    59    84   127    73   129 0.85 CbiX
Lipase_GDSL_3        PF14606.1    178 sp|P23871|HEMH_ECOLI -            320     0.077   12.7   0.0   1   1   4.2e-05      0.12   12.0   0.0    19   111    74   171    65   185 0.81 GDSL-like Lipase/Acylhydrolase family
Radical_SAM          PF04055.16   166 sp|P32131|HEMN_ECOLI -            457   3.9e-15   56.4   0.0   1   1   7.9e-19   5.8e-15   55.8   0.0     2   164    57   227    56   229 0.79 Radical SAM superfamily
HemN_C               PF06969.11    66 sp|P32131|HEMN_ECOLI -            457   4.4e-12   45.8   0.3   2   2   2.7e-15     2e-11   43.7   0.0     1    66   363   431   363   431 0.94 HemN C-terminal domain
Band_7               PF01145.20   179 sp|P0ABC3|HFLC_ECOLI -            334   1.5e-37  129.2   0.7   1   1   3.1e-41   2.3e-37  128.6   0.7     2   178    22   243    21   245 0.97 SPFH domain / Band 7 family
Band_7_1             PF13421.1    211 sp|P0ABC3|HFLC_ECOLI -            334     0.073   12.5   0.0   1   1   1.9e-05      0.14   11.6   0.0   176   208   196   228   161   231 0.86 SPFH domain-Band 7 family
DUF489               PF04356.7    193 sp|P25746|HFLD_ECOLI -            213   2.6e-76  255.5   0.8   1   1     4e-80     3e-76  255.3   0.8     1   192     7   200     7   201 0.98 Protein of unknown function (DUF489)
Rac1                 PF09632.5    297 sp|P25746|HFLD_ECOLI -            213   0.00084   18.5   0.6   1   1   1.9e-07    0.0014   17.7   0.5   131   197    63   137    39   186 0.78 Rac1-binding domain
Band_7               PF01145.20   179 sp|P0ABC7|HFLK_ECOLI -            419   5.3e-33  114.4   1.1   1   1   1.8e-36   9.1e-33  113.6   1.1     1   178    98   271    98   272 0.96 SPFH domain / Band 7 family
HflK_N               PF12221.3     42 sp|P0ABC7|HFLK_ECOLI -            419   8.5e-17   60.6  18.5   1   1   6.1e-20     3e-16   58.8  18.5     1    42     1    60     1    60 0.96 Bacterial membrane protein N terminal
DivIVA               PF05103.8    131 sp|P0ABC7|HFLK_ECOLI -            419     0.063   13.3   2.0   1   1   2.3e-05      0.11   12.5   2.0    61   129   257   325   233   327 0.83 DivIVA protein
MMR_HSR1             PF01926.18   116 sp|P25519|HFLX_ECOLI -            426   1.6e-21   76.4   0.1   1   1   3.9e-24   3.6e-21   75.2   0.1     2   116   200   318   199   318 0.86 50S ribosome-binding GTPase
GTP-bdg_N            PF13167.1     95 sp|P25519|HFLX_ECOLI -            426   1.7e-15   56.9   0.0   1   1   4.4e-18   4.1e-15   55.6   0.0     8    95    25   112    18   112 0.96 GTP-binding GTPase N-terminal
FeoB_N               PF02421.13   156 sp|P25519|HFLX_ECOLI -            426   1.6e-07   30.7   0.0   1   1   2.9e-10   2.7e-07   29.9   0.0     2   154   199   355   198   357 0.76 Ferrous iron transport protein B
GTP_EFTU             PF00009.22   188 sp|P25519|HFLX_ECOLI -            426   3.7e-06   26.4   0.2   2   2     4e-06    0.0037   16.7   0.1    88   183   271   358   265   363 0.67 Elongation factor Tu GTP binding domain
Arf                  PF00025.16   175 sp|P25519|HFLX_ECOLI -            426   1.3e-05   24.5   0.6   1   1   8.7e-08     8e-05   21.9   0.6    19   132   202   326   190   359 0.80 ADP-ribosylation factor family
cobW                 PF02492.14   178 sp|P25519|HFLX_ECOLI -            426    0.0019   17.6   2.0   2   2   0.00019      0.18   11.2   0.6    85   157   245   325   224   339 0.75 CobW/HypB/UreG, nucleotide-binding domain
Dynamin_N            PF00350.18   168 sp|P25519|HFLX_ECOLI -            426    0.0023   17.7   0.3   1   2    0.0003      0.28   11.0   0.0     1    32   200   231   200   239 0.84 Dynamin family
ATP_bind_1           PF03029.12   238 sp|P25519|HFLX_ECOLI -            426    0.0036   16.8   0.4   2   2   1.7e-05     0.015   14.8   0.1    67   177   220   329   218   372 0.77 Conserved hypothetical ATP binding protein
Miro                 PF08477.8    119 sp|P25519|HFLX_ECOLI -            426    0.0048   17.3   0.1   1   1   1.7e-05     0.016   15.7   0.1     2   119   200   320   199   320 0.71 Miro-like protein
SRPRB                PF09439.5    181 sp|P25519|HFLX_ECOLI -            426    0.0064   15.7   0.0   1   1   1.2e-05     0.011   14.9   0.0     3   123   197   320   195   332 0.70 Signal recognition particle receptor beta subunit
Ras                  PF00071.17   162 sp|P25519|HFLX_ECOLI -            426     0.014   14.7   0.0   1   1   4.6e-05     0.043   13.2   0.0     4   158   202   359   199   362 0.65 Ras family
ABC_tran             PF00005.22   137 sp|P25519|HFLX_ECOLI -            426     0.021   15.0   0.0   1   1   0.00019      0.17   12.1   0.0    13    84   199   290   196   321 0.65 ABC transporter
DUF258               PF03193.11   161 sp|P25519|HFLX_ECOLI -            426     0.041   13.0   0.0   1   1    0.0001     0.093   11.9   0.0    34    99   196   257   165   278 0.73 Protein of unknown function, DUF258
MobB                 PF03205.9    140 sp|P25519|HFLX_ECOLI -            426     0.094   12.4   0.0   1   1   0.00027      0.25   11.0   0.0     1    21   198   218   198   225 0.88 Molybdopterin guanine dinucleotide synthesis protein B
AAA_29               PF13555.1     62 sp|P25519|HFLX_ECOLI -            426      0.13   11.8   0.0   1   1   0.00033      0.31   10.5   0.0    15    41   189   215   177   220 0.83 P-loop containing region of AAA domain
LSM                  PF01423.17    67 sp|P0A6X3|HFQ_ECOLI  -            102     3e-09   36.2   0.0   1   1   3.1e-13   4.7e-09   35.6   0.0     7    67    16    64     6    64 0.86 LSM domain
HHA                  PF05321.6     57 sp|P0ACE3|HHA_ECOLI  -             72   1.3e-30  105.3   0.3   1   1     2e-34   1.5e-30  105.0   0.3     1    57    13    69    13    69 0.99 Haemolysin expression modulating protein
Sucrose_synth        PF00862.14   550 sp|P0ACE3|HHA_ECOLI  -             72     0.042   11.8   0.0   1   1   5.7e-06     0.042   11.8   0.0   185   237     9    61     4    72 0.88 Sucrose synthase
YcfA                 PF07927.7     56 sp|P76106|HICA_ECOLI -             58   4.2e-08   32.9   0.0   1   1   3.2e-12   4.7e-08   32.8   0.0     2    56     4    55     3    55 0.93 YcfA-like protein
UPF0150              PF03681.10    48 sp|P67697|HICB_ECOLI -            138   1.3e-12   47.1   0.1   1   1   6.6e-16     2e-12   46.5   0.1     1    45     2    46     2    49 0.95 Uncharacterised protein family (UPF0150)
HTH_3                PF01381.17    55 sp|P67697|HICB_ECOLI -            138   2.1e-07   30.6   0.1   1   1   1.1e-10   3.2e-07   30.0   0.1     7    53    88   134    82   136 0.93 Helix-turn-helix
KorB                 PF08535.5     93 sp|P67697|HICB_ECOLI -            138     0.032   14.4   0.0   1   2   4.7e-05      0.14   12.3   0.0     5    28    92   115    88   127 0.88 KorB domain
MarR_2               PF12802.2     62 sp|P67697|HICB_ECOLI -            138     0.066   12.8   0.0   1   1   4.4e-05      0.13   11.9   0.0    16    41    88   110    73   113 0.81 MarR family
HTH_24               PF13412.1     48 sp|P67697|HICB_ECOLI -            138     0.083   12.2   0.0   1   1   4.9e-05      0.14   11.5   0.0    16    36    89   109    80   112 0.77 Winged helix-turn-helix DNA-binding
DUF2136              PF09907.4     76 sp|P64578|HIGB_ECOLI -            104   9.5e-25   86.4   0.1   1   1   1.6e-28   1.2e-24   86.2   0.1     2    74    19    93    18    95 0.97 Uncharacterized protein conserved in bacteria (DUF2136)
Cobalamin_bind       PF01122.14   326 sp|P64578|HIGB_ECOLI -            104      0.15   10.6   0.0   1   1   2.3e-05      0.17   10.4   0.0   260   300    18    58     3    74 0.81 Eukaryotic cobalamin-binding protein
HTH_19               PF12844.2     64 sp|P67701|HIGA_ECOLI -            138   6.3e-08   32.5   0.0   2   2   7.9e-11   2.3e-07   30.7   0.0     4    56    84   134    82   138 0.92 Helix-turn-helix domain
HTH_3                PF01381.17    55 sp|P67701|HIGA_ECOLI -            138   2.1e-07   30.6   0.0   1   1   1.3e-10     4e-07   29.7   0.0     1    54    84   135    84   136 0.94 Helix-turn-helix
Histone_HNS          PF00816.16    93 sp|P67701|HIGA_ECOLI -            138     0.076   13.5   0.0   1   1     9e-05      0.27   11.7   0.0    18    44    73   105    60   129 0.72 H-NS histone family
Fis1_TPR_C           PF14853.1     53 sp|P67701|HIGA_ECOLI -            138     0.096   12.5   0.0   1   1     6e-05      0.18   11.7   0.0    16    34    29    47    23    48 0.93 Fis1 C-terminal tetratricopeptide repeat
HIT                  PF01230.18    98 sp|P0ACE7|HINT_ECOLI -            119   8.8e-30  103.1   0.0   1   1     2e-33     1e-29  102.9   0.0     1    97    12   109    12   110 0.97 HIT domain
DcpS_C               PF11969.3    116 sp|P0ACE7|HINT_ECOLI -            119   2.2e-25   89.1   0.0   1   1   4.8e-29   2.4e-25   89.0   0.0     2   103     5   106     4   117 0.96 Scavenger mRNA decapping enzyme C-term binding
DUF3865              PF12981.2    231 sp|P0ACE7|HINT_ECOLI -            119     0.057   13.1   0.1   1   1   1.6e-05      0.08   12.7   0.1   180   218    51    89    46    99 0.93 Domain of Unknown Function with PDB structure (DUF3865)
Couple_hipA          PF13657.1     99 sp|P23874|HIPA_ECOLI -            440   4.5e-25   87.8   0.0   1   1   1.6e-28     8e-25   87.0   0.0     4    98     7   103     4   104 0.97 HipA N-terminal domain
HipA_N               PF07805.7     81 sp|P23874|HIPA_ECOLI -            440   1.8e-21   76.1   0.0   1   1   8.5e-25   4.2e-21   74.9   0.0     1    81   150   238   150   238 0.99 HipA-like N-terminal domain
HipA_C               PF07804.7     79 sp|P23874|HIPA_ECOLI -            440   3.4e-17   62.3   0.0   1   2   2.1e-20     1e-16   60.7   0.0     1    79   249   332   249   332 0.95 HipA-like C-terminal domain
HisG                 PF01634.13   163 sp|P60757|HIS1_ECOLI -            299   8.9e-55  184.7   0.0   1   1   1.7e-58   1.3e-54  184.1   0.0     1   163    53   221    53   221 0.94 ATP phosphoribosyltransferase
HisG_C               PF08029.6     75 sp|P60757|HIS1_ECOLI -            299   5.6e-28   96.6   0.1   2   2     2e-31   1.5e-27   95.3   0.0     1    75   222   297   222   297 0.98 HisG, C-terminal domain
PRA-CH               PF01502.13    75 sp|P06989|HIS2_ECOLI -            203   1.6e-33  114.1   0.0   1   1   5.1e-37   2.5e-33  113.5   0.0     1    74    33   106    33   107 0.99 Phosphoribosyl-AMP cyclohydrolase
PRA-PH               PF01503.12    83 sp|P06989|HIS2_ECOLI -            203   1.3e-14   54.2   0.3   1   1   3.7e-18   1.8e-14   53.7   0.3     2    82   116   201   115   202 0.96 Phosphoribosyl-ATP pyrophosphohydrolase
MazG                 PF03819.12    74 sp|P06989|HIS2_ECOLI -            203     0.034   14.1   0.1   1   1   1.3e-05     0.063   13.2   0.1     7    65   147   200   141   203 0.82 MazG nucleotide pyrophosphohydrolase domain
His_biosynth         PF00977.16   229 sp|P10371|HIS4_ECOLI -            245   3.1e-75  252.3   0.5   1   1     3e-78   3.4e-75  252.2   0.5     1   229     1   234     1   234 0.98 Histidine biosynthesis protein
Trp_syntA            PF00290.15   259 sp|P10371|HIS4_ECOLI -            245   1.3e-05   23.8   1.2   1   2   1.5e-07   0.00017   20.2   0.1   175   232    51   108    32   114 0.88 Tryptophan synthase alpha chain
PEP_mutase           PF13714.1    238 sp|P10371|HIS4_ECOLI -            245   2.2e-05   23.8   0.1   1   2   9.3e-08   0.00011   21.5   0.0   158   224    32   107    20   113 0.88 Phosphoenolpyruvate phosphomutase
IGPS                 PF00218.16   254 sp|P10371|HIS4_ECOLI -            245   3.9e-05   22.8   0.2   2   2   5.8e-05     0.066   12.2   0.0   209   244   196   231   181   240 0.81 Indole-3-glycerol phosphate synthase
Dus                  PF01207.12   310 sp|P10371|HIS4_ECOLI -            245   0.00012   21.0   0.3   1   2   0.00019      0.22   10.3   0.1   173   218    63   107    54   120 0.88 Dihydrouridine synthase (Dus)
Dus                  PF01207.12   310 sp|P10371|HIS4_ECOLI -            245   0.00012   21.0   0.3   2   2    0.0005      0.57    8.9   0.0   177   218   189   230   183   240 0.87 Dihydrouridine synthase (Dus)
NMO                  PF03060.10   330 sp|P10371|HIS4_ECOLI -            245   0.00035   19.8   4.9   1   2   5.7e-06    0.0065   15.6   0.8   178   221    61   104    51   111 0.86 Nitronate monooxygenase
TMP-TENI             PF02581.12   180 sp|P10371|HIS4_ECOLI -            245   0.00042   19.4   1.1   1   2     2e-05     0.023   13.8   0.3   131   178    55   103    38   105 0.89 Thiamine monophosphate synthase/TENI
ThiG                 PF05690.9    247 sp|P10371|HIS4_ECOLI -            245    0.0011   18.0   0.8   1   2   3.2e-06    0.0037   16.3   0.2   165   214    63   112    43   127 0.90 Thiazole biosynthesis protein ThiG
PcrB                 PF01884.12   231 sp|P10371|HIS4_ECOLI -            245    0.0012   18.1   1.1   1   2   4.2e-06    0.0048   16.1   0.2   175   220    64   112    38   121 0.69 PcrB family
NanE                 PF04131.9    192 sp|P10371|HIS4_ECOLI -            245     0.003   16.5   0.9   1   1   5.3e-06    0.0061   15.5   0.1   123   187    51   116    39   121 0.84 Putative N-acetylmannosamine-6-phosphate epimerase
FMN_dh               PF01070.13   357 sp|P10371|HIS4_ECOLI -            245    0.0075   15.1   7.7   1   3   0.00016      0.18   10.6   1.5   270   313    62   106    52   114 0.82 FMN-dependent dehydrogenase
Ribul_P_3_epim       PF00834.14   201 sp|P10371|HIS4_ECOLI -            245      0.19   10.7   1.1   1   1   0.00031      0.35    9.9   0.2   164   200    71   108    58   109 0.80 Ribulose-phosphate 3 epimerase family
His_biosynth         PF00977.16   229 sp|P60664|HIS6_ECOLI -            258   6.2e-79  264.4   0.6   1   1   4.7e-82     7e-79  264.2   0.6     1   228     5   239     5   240 0.97 Histidine biosynthesis protein
Dus                  PF01207.12   310 sp|P60664|HIS6_ECOLI -            258   5.6e-08   31.9   0.0   1   2   2.3e-07   0.00034   19.5   0.0   139   225    31   115    14   127 0.84 Dihydrouridine synthase (Dus)
Dus                  PF01207.12   310 sp|P60664|HIS6_ECOLI -            258   5.6e-08   31.9   0.0   2   2   0.00013      0.19   10.5   0.0   137   211   156   229   139   235 0.85 Dihydrouridine synthase (Dus)
NMO                  PF03060.10   330 sp|P60664|HIS6_ECOLI -            258     4e-06   26.2   0.2   1   2   2.9e-06    0.0043   16.2   0.0   180   216    64   100    35   108 0.88 Nitronate monooxygenase
ThiG                 PF05690.9    247 sp|P60664|HIS6_ECOLI -            258   8.7e-05   21.7   0.0   1   2   2.7e-06     0.004   16.2   0.0   136   220    35   120    25   141 0.83 Thiazole biosynthesis protein ThiG
TMP-TENI             PF02581.12   180 sp|P60664|HIS6_ECOLI -            258   0.00039   19.5   0.0   1   2   7.3e-05      0.11   11.6   0.0   132   176    57   102    33   105 0.78 Thiamine monophosphate synthase/TENI
PcrB                 PF01884.12   231 sp|P60664|HIS6_ECOLI -            258   0.00056   19.2   0.1   1   2   2.3e-06    0.0034   16.6   0.0   171   208    63   100    46   115 0.85 PcrB family
Oxidored_FMN         PF00724.15   341 sp|P60664|HIS6_ECOLI -            258   0.00089   18.3   0.0   1   2   1.8e-05     0.026   13.5   0.0   283   335    66   117    35   120 0.89 NADH:flavin oxidoreductase / NADH oxidase family
IMPDH                PF00478.20   352 sp|P60664|HIS6_ECOLI -            258     0.054   12.3   0.1   1   2   0.00016      0.24   10.2   0.1   202   237    65   100    55   106 0.92 IMP dehydrogenase / GMP reductase domain
IGPD                 PF00475.13   145 sp|P06987|HIS7_ECOLI -            355   1.5e-64  216.2   0.3   1   1   1.1e-67   2.6e-64  215.4   0.3     1   145   196   338   196   338 0.99 Imidazoleglycerol-phosphate dehydratase
Hydrolase_like       PF13242.1     75 sp|P06987|HIS7_ECOLI -            355   1.5e-06   27.8   0.0   1   1   1.3e-09   3.1e-06   26.7   0.0     1    45   102   145   102   149 0.90 HAD-hyrolase-like
HAD_2                PF13419.1    176 sp|P06987|HIS7_ECOLI -            355   1.6e-06   28.4   0.1   1   1   1.9e-08   4.7e-05   23.6   0.0    75   173    29   145     8   148 0.82 Haloacid dehalogenase-like hydrolase
PNK3P                PF08645.6    159 sp|P06987|HIS7_ECOLI -            355   1.7e-06   27.6   0.0   1   1   1.2e-09   2.9e-06   26.8   0.0     5   130     8   134     4   182 0.77 Polynucleotide kinase 3 phosphatase
HAD                  PF12710.2    192 sp|P06987|HIS7_ECOLI -            355   0.00081   19.5   0.0   1   1   1.4e-06    0.0033   17.5   0.0    74   191    27   138    11   139 0.62 haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P06987|HIS7_ECOLI -            355     0.067   13.5   0.0   1   1   8.4e-05      0.21   11.9   0.0   129   215    33   142    23   142 0.72 haloacid dehalogenase-like hydrolase
Aminotran_1_2        PF00155.16   363 sp|P06986|HIS8_ECOLI -            356     4e-68  230.0   0.0   1   1   9.8e-72   4.9e-68  229.7   0.0    31   363    46   351    30   351 0.94 Aminotransferase class I and II
Alliinase_C          PF04864.8    363 sp|P06986|HIS8_ECOLI -            356     0.031   12.9   0.0   1   1     9e-06     0.044   12.4   0.0   139   213   148   233   101   243 0.74 Allinase
Cys_Met_Meta_PP      PF01053.15   386 sp|P06986|HIS8_ECOLI -            356     0.048   11.9   0.0   1   1   1.5e-05     0.075   11.3   0.0    86   180    91   187    71   196 0.74 Cys/Met metabolism PLP-dependent enzyme
SBP_bac_3            PF00497.15   225 sp|P0AEU0|HISJ_ECOLI -            260   5.6e-66  222.0   0.2   1   1   1.3e-69   6.4e-66  221.8   0.2     1   224    28   254    28   255 0.96 Bacterial extracellular solute-binding proteins, family 3
NMT1                 PF09084.6    216 sp|P0AEU0|HISJ_ECOLI -            260   0.00011   21.9   0.0   2   2   3.5e-07    0.0017   17.9   0.0    75   145   114   181    90   189 0.78 NMT1/THI5 like
BPD_transp_1         PF00528.17   185 sp|P0AEU3|HISM_ECOLI -            238     2e-15   56.7  13.1   1   1   2.7e-19     2e-15   56.7  13.1     1   179    37   224    37   230 0.81 Binding-protein-dependent transport system inner membrane component
DUF1469              PF07332.6    121 sp|P0AEU3|HISM_ECOLI -            238      0.16   11.6   3.8   2   2   5.6e-05      0.42   10.3   0.1    47    99   176   227   163   237 0.73 Protein of unknown function (DUF1469)
BPD_transp_1         PF00528.17   185 sp|P52094|HISQ_ECOLI -            228   2.5e-23   82.5  11.3   1   1   6.5e-27   3.2e-23   82.2  11.3     2   183    28   219    24   221 0.95 Binding-protein-dependent transport system inner membrane component
DcuC                 PF03606.10   465 sp|P52094|HISQ_ECOLI -            228      0.24    9.6  10.4   1   2   2.7e-05      0.13   10.4   5.7   267   372     1   104     1   111 0.90 C4-dicarboxylate anaerobic carrier
DUF3481              PF11980.3     87 sp|P52094|HISQ_ECOLI -            228      0.91    9.3   0.0   2   2   0.00018      0.91    9.3   0.0    16    48   191   224   178   228 0.81 Domain of unknown function (DUF3481)
ABC_tran             PF00005.22   137 sp|P07109|HISP_ECOLI -            257   8.1e-34  116.8   0.1   1   1   1.8e-36   1.1e-33  116.3   0.1     1   137    21   181    21   181 0.92 ABC transporter
AAA_21               PF13304.1    303 sp|P07109|HISP_ECOLI -            257   3.1e-15   56.9   0.0   1   2     2e-06    0.0013   18.8   0.4     3    26    35    56    33    76 0.79 AAA domain
AAA_21               PF13304.1    303 sp|P07109|HISP_ECOLI -            257   3.1e-15   56.9   0.0   2   2     1e-11   6.4e-09   36.1   0.0   189   298   115   211    61   214 0.78 AAA domain
SMC_N                PF02463.14   220 sp|P07109|HISP_ECOLI -            257   3.3e-08   33.0   0.2   1   1   1.1e-10     7e-08   31.9   0.2    25   207    32   220     9   232 0.77 RecF/RecN/SMC N terminal domain
AAA_15               PF13175.1    415 sp|P07109|HISP_ECOLI -            257   8.4e-06   25.0   0.1   1   2   0.00011     0.066   12.2   0.1    20    56    26    74     3   100 0.72 AAA ATPase domain
AAA_15               PF13175.1    415 sp|P07109|HISP_ECOLI -            257   8.4e-06   25.0   0.1   2   2   0.00024      0.15   11.0   0.0   372   411   173   211   158   223 0.89 AAA ATPase domain
AAA_16               PF13191.1    185 sp|P07109|HISP_ECOLI -            257   5.2e-05   23.3   0.2   1   1   5.1e-07   0.00032   20.7   0.2    19    84    26    99    17   227 0.62 AAA ATPase domain
AAA_10               PF12846.2    304 sp|P07109|HISP_ECOLI -            257   0.00041   19.8   0.5   1   2   0.00038      0.23   10.8   0.3     6    22    36    52    33    65 0.82 AAA-like domain
AAA_29               PF13555.1     62 sp|P07109|HISP_ECOLI -            257   0.00055   19.4   0.1   1   1   1.6e-06     0.001   18.5   0.1    21    46    29    54    19    67 0.80 P-loop containing region of AAA domain
ABC_ATPase           PF09818.4    448 sp|P07109|HISP_ECOLI -            257    0.0023   16.6   0.1   2   2   0.00061      0.38    9.2   0.0   324   353   154   183   149   232 0.89 Predicted ATPase of the ABC class
AAA_13               PF13166.1    712 sp|P07109|HISP_ECOLI -            257    0.0027   16.2   0.0   2   2   0.00025      0.15   10.4   0.0   527   579   170   220   160   234 0.91 AAA domain
Miro                 PF08477.8    119 sp|P07109|HISP_ECOLI -            257    0.0071   16.8   0.0   1   1     2e-05     0.012   16.0   0.0     2    57    34    84    33   156 0.77 Miro-like protein
AAA_23               PF13476.1    202 sp|P07109|HISP_ECOLI -            257     0.011   16.0   0.1   1   1   3.1e-05     0.019   15.2   0.1    21    41    33    53    13    54 0.85 AAA domain
AAA_33               PF13671.1    143 sp|P07109|HISP_ECOLI -            257     0.011   15.5   0.0   1   1   3.5e-05     0.022   14.6   0.0     1    32    33    68    33   219 0.77 AAA domain
PRK                  PF00485.13   194 sp|P07109|HISP_ECOLI -            257     0.025   14.1   0.0   1   1   6.6e-05     0.041   13.4   0.0     1    20    33    52    33    89 0.83 Phosphoribulokinase / Uridine kinase family
G-alpha              PF00503.15   389 sp|P07109|HISP_ECOLI -            257     0.034   12.8   0.0   1   1   5.6e-05     0.035   12.8   0.0    63    88    36    73    29   200 0.77 G-protein alpha subunit
SbcCD_C              PF13558.1     90 sp|P07109|HISP_ECOLI -            257     0.034   14.0   0.1   1   1   0.00061      0.38   10.7   0.1    61    89   168   196   150   197 0.74 Putative exonuclease SbcCD, C subunit
AAA_22               PF13401.1    131 sp|P07109|HISP_ECOLI -            257     0.035   14.2   0.4   1   1    0.0004      0.25   11.4   0.4     6    23    33    50    28   218 0.92 AAA domain
AAA_25               PF13481.1    194 sp|P07109|HISP_ECOLI -            257     0.046   13.1   0.0   1   2    0.0013       0.8    9.0   0.0    32    50    30    48    18    52 0.89 AAA domain
FtsK_SpoIIIE         PF01580.13   205 sp|P07109|HISP_ECOLI -            257     0.047   13.1   0.2   1   1   0.00019      0.12   11.8   0.0    41    57    34    50     8    51 0.83 FtsK/SpoIIIE family
AAA_17               PF13207.1    121 sp|P07109|HISP_ECOLI -            257     0.066   14.0   1.4   1   1   0.00019      0.12   13.2   1.4     1    17    33    49    33   226 0.96 AAA domain
DUF258               PF03193.11   161 sp|P07109|HISP_ECOLI -            257     0.074   12.2   0.6   1   1   0.00018      0.11   11.6   0.1    35    57    31    53     5    88 0.80 Protein of unknown function, DUF258
DUF87                PF01935.12   229 sp|P07109|HISP_ECOLI -            257      0.08   12.7   0.3   1   1   0.00037      0.23   11.2   0.3    27    43    35    51    32   148 0.64 Domain of unknown function DUF87
MobB                 PF03205.9    140 sp|P07109|HISP_ECOLI -            257     0.084   12.5   0.0   1   1   0.00038      0.23   11.1   0.0     2    23    33    53    32   116 0.87 Molybdopterin guanine dinucleotide synthesis protein B
NACHT                PF05729.7    166 sp|P07109|HISP_ECOLI -            257       0.1   12.2   0.0   1   1    0.0006      0.37   10.4   0.0     2    20    33    51    32    58 0.88 NACHT domain
Histidinol_dh        PF00815.15   413 sp|P06988|HISX_ECOLI -            434  5.7e-183  608.2   1.8   1   1  8.8e-187  6.6e-183  608.0   1.8     2   413    18   428    17   428 0.99 Histidinol dehydrogenase
ECH_C                PF13766.1    118 sp|P06988|HISX_ECOLI -            434     0.015   15.4   1.8   1   2   3.3e-06     0.025   14.7   0.2     8    79    25    96    20   122 0.77 2-enoyl-CoA Hydratase C-terminal region
Transthyretin        PF00576.16   112 sp|P76341|HIUH_ECOLI -            137     2e-42  143.5   0.1   1   1   1.3e-45   2.4e-42  143.3   0.1     2   112    28   136    27   136 0.98 HIUase/Transthyretin family
Big_1                PF02369.11   100 sp|P76341|HIUH_ECOLI -            137   4.4e-05   23.3   0.4   1   1   3.1e-08   5.8e-05   22.9   0.4    17    84    19    87     8    99 0.77 Bacterial Ig-like domain (group 1)
DUF4480              PF13715.1     88 sp|P76341|HIUH_ECOLI -            137   0.00066   19.6   0.4   1   1   8.1e-07    0.0015   18.5   0.4     5    59    32    98    28   103 0.83 Domain of unknown function (DUF4480)
DUF2606              PF10794.4    131 sp|P76341|HIUH_ECOLI -            137    0.0014   18.1   0.3   1   1   1.4e-06    0.0027   17.1   0.3    45   108    30    93     5   103 0.75 Protein of unknown function (DUF2606)
CarboxypepD_reg      PF13620.1     82 sp|P76341|HIUH_ECOLI -            137    0.0016   18.4   0.2   1   1   1.7e-06    0.0032   17.4   0.2     5    55    32    90    28   103 0.70 Carboxypeptidase regulatory-like domain
DUF4198              PF10670.4    215 sp|P76341|HIUH_ECOLI -            137    0.0022   18.0   0.1   1   1   1.5e-06    0.0028   17.7   0.1   159   202    37    78    20    90 0.85 Domain of unknown function (DUF4198)
MG1                  PF11974.3     97 sp|P76341|HIUH_ECOLI -            137    0.0044   17.5   0.1   1   1   3.3e-06    0.0062   17.0   0.1     8    57    24    73    15    98 0.73 Alpha-2-macroglobulin MG1 domain
A2M_N                PF01835.14    99 sp|P76341|HIUH_ECOLI -            137     0.044   14.0   0.1   1   1   3.4e-05     0.064   13.5   0.1    16    92    27    98    22   107 0.75 MG2 domain
Epimerase            PF01370.16   236 sp|P67910|HLDD_ECOLI -            310   5.8e-50  169.9   0.0   1   1   3.9e-53   7.2e-50  169.6   0.0     1   236     2   236     2   236 0.92 NAD dependent epimerase/dehydratase family
3Beta_HSD            PF01073.14   280 sp|P67910|HLDD_ECOLI -            310   1.8e-12   46.5   0.0   1   1   1.4e-15   2.5e-12   46.0   0.0     1   223     3   219     3   224 0.79 3-beta hydroxysteroid dehydrogenase/isomerase family
RmlD_sub_bind        PF04321.12   287 sp|P67910|HLDD_ECOLI -            310   7.8e-10   38.1   0.0   1   1   1.2e-12   2.2e-09   36.6   0.0     3   155     2   174     1   267 0.79 RmlD substrate binding domain
NAD_binding_4        PF07993.7    249 sp|P67910|HLDD_ECOLI -            310     2e-07   30.2   0.0   2   2     6e-08   0.00011   21.2   0.0    86   210    67   184    48   220 0.84 Male sterility protein
Polysacc_synt_2      PF02719.10   294 sp|P67910|HLDD_ECOLI -            310   2.4e-05   23.4   0.1   1   2   2.6e-05     0.049   12.5   0.0     1    31     2    32     2    79 0.84 Polysaccharide biosynthesis protein
Polysacc_synt_2      PF02719.10   294 sp|P67910|HLDD_ECOLI -            310   2.4e-05   23.4   0.1   2   2   0.00027       0.5    9.2   0.0   133   175   135   174   128   258 0.79 Polysaccharide biosynthesis protein
ThiF                 PF00899.16   136 sp|P67910|HLDD_ECOLI -            310     0.027   14.2   0.2   1   2    0.0004      0.75    9.6   0.2     9    34     7    32     1    53 0.87 ThiF family
adh_short            PF00106.20   167 sp|P67910|HLDD_ECOLI -            310     0.052   13.4   0.1   1   1   5.4e-05       0.1   12.5   0.1     3    33     2    32     1    82 0.90 short chain dehydrogenase
NAD_binding_10       PF13460.1    183 sp|P67910|HLDD_ECOLI -            310     0.077   12.9   0.1   1   1   9.9e-05      0.18   11.7   0.1     1    33     2    34     2    62 0.73 NADH(P)-binding
PfkB                 PF00294.19   301 sp|P76658|HLDE_ECOLI -            477   3.2e-55  187.3   0.5   1   2   1.7e-58   5.1e-55  186.7   0.1     2   299    11   305    10   307 0.87 pfkB family carbohydrate kinase
CTP_transf_2         PF01467.21   157 sp|P76658|HLDE_ECOLI -            477   1.7e-11   44.3   0.0   1   1   2.4e-14   7.1e-11   42.4   0.0     1   156   344   469   344   470 0.90 Cytidylyltransferase
Phos_pyr_kin         PF08543.7    246 sp|P76658|HLDE_ECOLI -            477   1.6e-08   34.0   0.0   1   1   1.3e-11   3.8e-08   32.8   0.0   118   224   187   287   166   293 0.88 Phosphomethylpyrimidine kinase
Carb_kinase          PF01256.12   242 sp|P76658|HLDE_ECOLI -            477   4.3e-06   26.1   0.1   1   1   2.4e-09     7e-06   25.5   0.1    61   212   137   287    82   310 0.74 Carbohydrate kinase
FAD_syn              PF06574.7    158 sp|P76658|HLDE_ECOLI -            477     0.055   13.0   0.0   1   1   4.2e-05      0.13   11.9   0.0     4    35   338   369   335   416 0.76 FAD synthetase
HlyE                 PF06109.8    299 sp|P77335|HLYE_ECOLI -            303  2.1e-193  640.9  12.9   1   1  6.4e-197  2.4e-193  640.7  12.9     1   299     4   302     4   302 1.00 Haemolysin E (HlyE)
UPF0300              PF08594.5    215 sp|P77335|HLYE_ECOLI -            303    0.0072   15.2   0.2   1   1   3.5e-06     0.013   14.4   0.2    37   132    27   122    24   173 0.76 Uncharacterised protein family (UPF0300)
PRP8_domainIV        PF12134.3    231 sp|P77335|HLYE_ECOLI -            303     0.048   13.0   0.1   1   1   2.5e-05     0.094   12.0   0.1   140   224     6    93     2    99 0.88 PRP8 domain IV core
Globin               PF00042.17   110 sp|P24232|HMP_ECOLI  -            396     3e-15   56.5   0.0   1   1   2.7e-18   6.6e-15   55.4   0.0     2   110     7   103     6   103 0.96 Globin
NAD_binding_1        PF00175.16   109 sp|P24232|HMP_ECOLI  -            396     2e-14   54.0   0.0   1   1   1.5e-17   3.7e-14   53.2   0.0     1   108   264   372   264   373 0.82 Oxidoreductase NAD-binding domain
FAD_binding_6        PF00970.19    99 sp|P24232|HMP_ECOLI  -            396   1.1e-13   51.1   0.0   1   1   9.4e-17   2.3e-13   50.0   0.0     2    97   155   252   154   254 0.90 Oxidoreductase FAD-binding domain
Protoglobin          PF11563.3    158 sp|P24232|HMP_ECOLI  -            396   9.6e-05   22.0   0.0   1   1   6.3e-08   0.00016   21.4   0.0    14   115     2   106     1   123 0.89 Protoglobin
DUF1987              PF09345.5     99 sp|P24232|HMP_ECOLI  -            396     0.016   15.0   0.0   2   2   3.3e-05     0.081   12.7   0.0    65    97   274   306   269   308 0.89 Domain of unknown function (DUF1987)
DUF2317              PF10079.4    542 sp|P24232|HMP_ECOLI  -            396     0.033   12.8   0.0   1   1   1.9e-05     0.046   12.3   0.0    24    95    24    96     3   100 0.86 Uncharacterized protein conserved in bacteria (DUF2317)
Histone_HNS          PF00816.16    93 sp|P0ACF8|HNS_ECOLI  -            137   1.2e-19   70.5   6.3   1   1     2e-23   1.5e-19   70.2   5.5     2    91    25   127    24   130 0.91 H-NS histone family
HMGL-like            PF00682.14   237 sp|P51020|HOA_ECOLI  -            337   1.4e-63  214.7   4.4   1   1   2.2e-67   1.7e-63  214.4   4.4     1   235    14   245    14   247 0.99 HMGL-like
DmpG_comm            PF07836.6     66 sp|P51020|HOA_ECOLI  -            337   2.1e-32  110.3   0.1   1   1   5.6e-36   4.1e-32  109.3   0.1     1    65   271   335   271   336 0.97 DmpG-like communication domain
T2SE                 PF00437.15   272 sp|P36645|HOFB_ECOLI -            461   1.2e-83  280.2   0.4   1   1     2e-86   1.6e-83  279.7   0.4     4   271    89   353    86   354 0.98 Type II/IV secretion system protein
T2SE_Nter            PF05157.10   109 sp|P36645|HOFB_ECOLI -            461     9e-06   25.6   0.0   1   1   3.4e-08   2.7e-05   24.1   0.0    43   104     8    68     6    73 0.92 Type II secretion system (T2SS), protein E, N-terminal domain
AAA_19               PF13245.1     76 sp|P36645|HOFB_ECOLI -            461   0.00023   20.8   0.1   1   1   9.2e-07   0.00072   19.2   0.1     6    34   210   239   206   249 0.83 Part of AAA domain
AAA_16               PF13191.1    185 sp|P36645|HOFB_ECOLI -            461   0.00053   20.0   0.3   1   1     2e-06    0.0016   18.4   0.1     9    81   204   283   202   351 0.63 AAA ATPase domain
AAA_22               PF13401.1    131 sp|P36645|HOFB_ECOLI -            461    0.0014   18.7   0.5   1   1   7.7e-06     0.006   16.7   0.1     3    48   214   254   211   368 0.78 AAA domain
AAA_14               PF13173.1    128 sp|P36645|HOFB_ECOLI -            461    0.0041   17.0   0.0   1   1   1.3e-05      0.01   15.7   0.0     4    82   217   305   214   321 0.71 AAA domain
AAA_30               PF13604.1    196 sp|P36645|HOFB_ECOLI -            461    0.0057   16.2   0.0   1   1     2e-05     0.015   14.8   0.0     4    46   201   243   198   250 0.83 AAA domain
ResIII               PF04851.10   184 sp|P36645|HOFB_ECOLI -            461     0.014   15.2   0.1   1   1   3.9e-05      0.03   14.1   0.0    11    51   203   241   183   255 0.81 Type III restriction enzyme, res subunit
AAA_23               PF13476.1    202 sp|P36645|HOFB_ECOLI -            461      0.02   15.2   0.0   1   1   4.8e-05     0.037   14.3   0.0    18    36   214   232   200   236 0.80 AAA domain
AAA_29               PF13555.1     62 sp|P36645|HOFB_ECOLI -            461     0.022   14.2   0.0   1   1   6.6e-05     0.051   13.1   0.0    21    45   214   238   205   245 0.77 P-loop containing region of AAA domain
MobB                 PF03205.9    140 sp|P36645|HOFB_ECOLI -            461     0.029   14.0   0.0   1   1   7.3e-05     0.057   13.1   0.0     3    39   218   253   216   270 0.84 Molybdopterin guanine dinucleotide synthesis protein B
AAA_11               PF13086.1    236 sp|P36645|HOFB_ECOLI -            461     0.034   13.7   0.0   1   1   9.1e-05     0.071   12.6   0.0     6    66   203   322   199   347 0.69 AAA domain
PhoH                 PF02562.11   205 sp|P36645|HOFB_ECOLI -            461      0.07   12.3   0.1   2   2   0.00059      0.46    9.6   0.0    12    48   207   243   199   249 0.78 PhoH-like protein
AAA                  PF00004.24   132 sp|P36645|HOFB_ECOLI -            461      0.07   13.3   0.0   1   1   0.00019      0.15   12.3   0.0     1    67   218   293   218   319 0.61 ATPase family associated with various cellular activities (AAA)
DEAD                 PF00270.24   169 sp|P36645|HOFB_ECOLI -            461     0.075   12.5   0.0   1   1   0.00016      0.13   11.7   0.0     9    39   208   239   200   410 0.82 DEAD/DEAH box helicase
AAA_17               PF13207.1    121 sp|P36645|HOFB_ECOLI -            461     0.083   13.7   0.0   1   1   0.00024      0.18   12.5   0.0     2    33   218   253   217   320 0.74 AAA domain
Zeta_toxin           PF06414.7    201 sp|P36645|HOFB_ECOLI -            461     0.088   11.8   0.0   1   1    0.0003      0.24   10.4   0.0    14    43   213   241   201   250 0.77 Zeta toxin
DUF2075              PF09848.4    352 sp|P36645|HOFB_ECOLI -            461      0.12   11.2   0.0   1   1   0.00023      0.18   10.7   0.0     3    26   217   240   215   279 0.88 Uncharacterized conserved protein (DUF2075)
Arch_ATPase          PF01637.13   234 sp|P36645|HOFB_ECOLI -            461      0.14   11.8   0.0   1   1    0.0003      0.23   11.1   0.0    16    51   212   246   203   269 0.78 Archaeal ATPase
T2SF                 PF00482.18   124 sp|P36646|HOFC_ECOLI -            400     7e-55  184.2   1.5   1   2   1.3e-31     2e-27   95.5   0.2     2   124    64   186    63   186 0.98 Type II secretion system (T2SS), protein F
T2SF                 PF00482.18   124 sp|P36646|HOFC_ECOLI -            400     7e-55  184.2   1.5   2   2   3.1e-29   4.6e-25   87.9   0.1     3   124   268   388   266   388 0.98 Type II secretion system (T2SS), protein F
Secretin             PF00263.16   165 sp|P34749|HOFQ_ECOLI -            412   2.4e-45  153.9   0.2   1   1   1.1e-48   5.6e-45  152.6   0.2     1   164   250   409   250   410 0.93 Bacterial type II and III secretion system protein
Secretin_N           PF03958.12    82 sp|P34749|HOFQ_ECOLI -            412   5.1e-11   42.5   0.3   2   2   5.3e-14   2.6e-10   40.3   0.1     2    81   120   179   119   180 0.96 Bacterial type II/III secretion system short domain
STN                  PF07660.9     52 sp|P34749|HOFQ_ECOLI -            412   5.9e-08   32.1   0.2   2   2   2.4e-09   1.2e-05   24.7   0.0     2    47    47    89    46    91 0.89 Secretin and TonB N terminus short domain
HOK_GEF              PF01848.11    43 sp|P37305|HOKA_ECOLI -             50   3.1e-23   80.8   2.7   1   1   4.6e-27   3.4e-23   80.6   2.7     1    43     4    46     4    46 0.99 Hok/gef family
DUF3149              PF11346.3     42 sp|P37305|HOKA_ECOLI -             50    0.0081   15.6   0.3   1   1     2e-06     0.015   14.8   0.3    11    32     5    23     3    25 0.78 Protein of unknown function (DUF3149)
HOK_GEF              PF01848.11    43 sp|P0ACG4|HOKC_ECOLI -             50   1.8e-19   68.7   3.3   1   1   1.3e-23     2e-19   68.6   3.3     1    43     5    47     5    47 0.98 Hok/gef family
HOK_GEF              PF01848.11    43 sp|P0ACG6|HOKD_ECOLI -             51   1.4e-19   69.1   4.6   1   1     1e-23   1.5e-19   69.0   4.6     1    43     5    47     5    47 0.99 Hok/gef family
HOK_GEF              PF01848.11    43 sp|P77494|HOKB_ECOLI -             49   2.6e-20   71.4   2.9   1   1   1.9e-24   2.9e-20   71.3   2.9     2    43     5    46     4    46 0.97 Hok/gef family
HOK_GEF              PF01848.11    43 sp|P77091|HOKE_ECOLI -             50   2.6e-18   65.0   1.1   1   1   3.9e-22   2.9e-18   64.8   1.1     1    43     4    46     4    46 0.99 Hok/gef family
CoxIIa               PF08113.6     34 sp|P77091|HOKE_ECOLI -             50     0.073   12.8   3.1   1   1   1.5e-05      0.11   12.2   3.1     6    24     4    22     3    25 0.89 Cytochrome c oxidase subunit IIa family
Ribosomal_S30AE      PF02482.14    97 sp|P0AFX0|HPF_ECOLI  -             95   1.5e-33  115.0   1.8   1   1   1.1e-37   1.7e-33  114.9   1.8     1    97     2    95     2    95 0.98 Sigma 54 modulation protein / S30EA ribosomal protein
HPPK                 PF01288.15   127 sp|P26281|HPPK_ECOLI -            159   2.3e-44  150.1   0.0   1   1   1.9e-48   2.8e-44  149.9   0.0     1   127     5   132     5   132 0.99 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
Pribosyltran         PF00156.22   125 sp|P0A9M2|HPRT_ECOLI -            178   4.1e-18   65.3   0.1   1   1     7e-22   5.2e-18   64.9   0.1     9   124    17   128     7   129 0.91 Phosphoribosyl transferase domain
UPRTase              PF14681.1    207 sp|P0A9M2|HPRT_ECOLI -            178    0.0068   15.6   0.0   1   1   1.1e-06    0.0085   15.3   0.0    55   148    21   119     3   133 0.72 Uracil phosphoribosyltransferase
DUF3418              PF11898.3    586 sp|P43329|HRPA_ECOLI -           1300  1.1e-241  803.3   0.6   1   1  1.7e-244  1.5e-241  802.9   0.6     2   586   712  1298   711  1298 0.99 Domain of unknown function (DUF3418)
HA2                  PF04408.18   102 sp|P43329|HRPA_ECOLI -           1300   3.7e-24   84.6   0.0   1   1   9.4e-27   8.2e-24   83.5   0.0     2   101   465   558   464   559 0.89 Helicase associated domain (HA2)
OB_NTP_bind          PF07717.11   114 sp|P43329|HRPA_ECOLI -           1300   4.8e-22   77.9   0.0   1   1   1.2e-24   1.1e-21   76.8   0.0     2   114   600   699   599   699 0.94 Oligonucleotide/oligosaccharide-binding (OB)-fold
Helicase_C           PF00271.26    78 sp|P43329|HRPA_ECOLI -           1300   1.2e-10   41.0   0.1   1   1   3.1e-13   2.7e-10   39.9   0.1     2    77   312   403   311   404 0.94 Helicase conserved C-terminal domain
DEAD                 PF00270.24   169 sp|P43329|HRPA_ECOLI -           1300   3.9e-07   29.7   0.0   1   1   1.1e-09   9.2e-07   28.5   0.0     7   163    86   233    80   239 0.73 DEAD/DEAH box helicase
AAA_22               PF13401.1    131 sp|P43329|HRPA_ECOLI -           1300   9.5e-05   22.5   0.3   1   1     5e-07   0.00044   20.4   0.0     3   120    92   226    86   234 0.72 AAA domain
T2SE                 PF00437.15   272 sp|P43329|HRPA_ECOLI -           1300   0.00012   21.1   0.0   1   1   2.7e-07   0.00023   20.1   0.0   115   149    81   114    29   122 0.75 Type II/IV secretion system protein
ResIII               PF04851.10   184 sp|P43329|HRPA_ECOLI -           1300    0.0011   18.8   0.2   1   1   4.5e-05     0.039   13.7   0.2     7   157    42   201    36   232 0.74 Type III restriction enzyme, res subunit
NACHT                PF05729.7    166 sp|P43329|HRPA_ECOLI -           1300    0.0039   16.8   2.8   1   1     2e-05     0.018   14.7   0.7     2    28    95   121    94   260 0.56 NACHT domain
AAA_19               PF13245.1     76 sp|P43329|HRPA_ECOLI -           1300     0.017   14.8   0.1   1   1   4.8e-05     0.042   13.6   0.1     3    62    87   142    85   164 0.74 Part of AAA domain
DUF2249              PF10006.4     69 sp|P43329|HRPA_ECOLI -           1300     0.024   14.2   0.0   2   2   0.00088      0.77    9.3   0.0    34    55   876   895   866   908 0.86 Uncharacterized conserved protein (DUF2249)
PhoH                 PF02562.11   205 sp|P43329|HRPA_ECOLI -           1300      0.03   13.5   0.0   1   1   9.1e-05     0.079   12.1   0.0     6    33    80   107    77   115 0.90 PhoH-like protein
DUF2075              PF09848.4    352 sp|P43329|HRPA_ECOLI -           1300     0.057   12.3   0.0   1   1   0.00013      0.11   11.4   0.0     2    93    94   200    93   205 0.64 Uncharacterized conserved protein (DUF2075)
FtsK_SpoIIIE         PF01580.13   205 sp|P43329|HRPA_ECOLI -           1300      0.11   11.9   0.0   1   1   0.00095      0.83    9.0   0.0    36    58    91   113    62   118 0.79 FtsK/SpoIIIE family
NTPase_1             PF03266.10   168 sp|P43329|HRPA_ECOLI -           1300      0.13   11.9   0.1   1   1   0.00034       0.3   10.8   0.1     2   103    96   198    95   216 0.66 NTPase
HrpB_C               PF08482.5    133 sp|P37024|HRPB_ECOLI -            809     7e-56  188.0   0.1   1   1   5.9e-59   1.7e-55  186.7   0.1     1   133   664   796   664   796 1.00 ATP-dependent helicase C-terminal
DEAD                 PF00270.24   169 sp|P37024|HRPB_ECOLI -            809   1.4e-11   44.1   0.0   1   1   1.2e-14   3.6e-11   42.8   0.0    15   164    21   162     7   167 0.75 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|P37024|HRPB_ECOLI -            809   4.4e-10   39.2   0.0   1   1   2.8e-13   8.4e-10   38.3   0.0    10    77   242   327   237   328 0.96 Helicase conserved C-terminal domain
HA2                  PF04408.18   102 sp|P37024|HRPB_ECOLI -            809   2.2e-09   37.2   0.1   1   1   1.5e-12   4.4e-09   36.2   0.1     2    62   389   448   388   504 0.85 Helicase associated domain (HA2)
AAA_22               PF13401.1    131 sp|P37024|HRPB_ECOLI -            809     0.049   13.7   0.2   1   1   8.8e-05      0.26   11.4   0.0     7   115    23   148    20   161 0.71 AAA domain
HSP70                PF00012.15   602 sp|P0A6Z1|HSCA_ECOLI -            616  2.3e-202  673.1   0.1   1   1  3.6e-206  2.7e-202  672.9   0.1     2   600    22   599    21   601 0.97 Hsp70 protein
MreB_Mbl             PF06723.8    327 sp|P0A6Z1|HSCA_ECOLI -            616   1.3e-17   63.4   0.1   1   1   6.2e-20   4.6e-16   58.3   0.1    66   318   122   373    19   379 0.89 MreB/Mbl protein
HSCB_C               PF07743.8     78 sp|P0A6L9|HSCB_ECOLI -            171   2.7e-21   75.8  12.9   2   2   3.6e-24   1.1e-20   73.8   9.2     2    77    87   162    86   163 0.97 HSCB C-terminal oligomerisation domain
DnaJ                 PF00226.26    64 sp|P0A6L9|HSCB_ECOLI -            171   1.6e-12   46.9   0.0   1   1   1.1e-15   3.1e-12   46.0   0.0     1    63     2    70     2    71 0.97 DnaJ domain
DUF480               PF04337.7    148 sp|P0A6L9|HSCB_ECOLI -            171    0.0044   16.8   0.0   1   1   2.3e-06    0.0069   16.2   0.0    22    77    69   125    62   165 0.83 Protein of unknown function, DUF480
ERCC4                PF02732.10   143 sp|P0A6L9|HSCB_ECOLI -            171      0.18   11.5   1.9   1   1   8.7e-05      0.26   11.0   1.5    57   117   101   169    80   171 0.74 ERCC4 domain
SMC_N                PF02463.14   220 sp|P0A6L9|HSCB_ECOLI -            171      0.21   10.7   0.4   1   1    0.0001       0.3   10.3   0.4   164   209   102   148    83   159 0.88 RecF/RecN/SMC N terminal domain
HSP70                PF00012.15   602 sp|P77319|HSCC_ECOLI -            556  2.4e-115  385.7   0.0   1   2   3.3e-19     7e-16   57.2   0.0     1    74     7    81     7    85 0.95 Hsp70 protein
HSP70                PF00012.15   602 sp|P77319|HSCC_ECOLI -            556  2.4e-115  385.7   0.0   2   2  7.5e-101   1.6e-97  326.9   0.0   108   554    87   540    80   552 0.90 Hsp70 protein
MreB_Mbl             PF06723.8    327 sp|P77319|HSCC_ECOLI -            556     2e-13   49.6   0.0   1   1   1.2e-15   2.6e-12   46.0   0.0     3   316     7   339     5   347 0.65 MreB/Mbl protein
FGGY_C               PF02782.11   198 sp|P77319|HSCC_ECOLI -            556   0.00013   21.6   0.0   1   1     1e-07   0.00022   20.8   0.0   146   195   293   343   257   346 0.88 FGGY family of carbohydrate kinases, C-terminal domain
DDR                  PF08841.5    332 sp|P77319|HSCC_ECOLI -            556     0.044   12.6   0.1   1   2   8.4e-05      0.18   10.6   0.0   118   167   150   198   119   221 0.73 Diol dehydratase reactivase ATPase-like domain
DUF4445              PF14574.1    412 sp|P77319|HSCC_ECOLI -            556     0.057   11.6   0.0   2   2   0.00011      0.23    9.6   0.0    54   116   267   329   260   354 0.85 Domain of unknown function (DUF4445)
Hydantoinase_A       PF01968.13   290 sp|P77319|HSCC_ECOLI -            556     0.077   12.0   0.1   1   2   0.00015      0.31   10.0   0.0    62   101   152   190   136   199 0.76 Hydantoinase/oxoprolinase
HSP33                PF01430.14   280 sp|P0A6Y5|HSLO_ECOLI -            292   1.1e-97  326.5   0.0   1   1  8.1e-102   1.2e-97  326.4   0.0     1   279     4   273     4   274 0.96 Hsp33 protein
S4                   PF01479.20    48 sp|P0ACG8|HSLR_ECOLI -            133   8.4e-13   47.5   0.0   1   1   9.3e-17   1.4e-12   46.8   0.0     1    46     9    53     9    55 0.95 S4 domain
AAA_2                PF07724.9    171 sp|P0A6H5|HSLU_ECOLI -            443   5.3e-52  176.1   0.7   1   2   2.9e-09   1.5e-06   28.1   0.0     5    66    52   113    49   115 0.92 AAA domain (Cdc48 subfamily)
AAA_2                PF07724.9    171 sp|P0A6H5|HSLU_ECOLI -            443   5.3e-52  176.1   0.7   2   2   1.7e-45     9e-43  146.1   0.2    10   171   188   329   170   329 0.89 AAA domain (Cdc48 subfamily)
AAA                  PF00004.24   132 sp|P0A6H5|HSLU_ECOLI -            443   2.2e-16   60.2   0.1   1   2     1e-09   5.5e-07   29.8   0.0     1    57    53   107    53   142 0.72 ATPase family associated with various cellular activities (AAA)
AAA                  PF00004.24   132 sp|P0A6H5|HSLU_ECOLI -            443   2.2e-16   60.2   0.1   2   2   4.4e-09   2.3e-06   27.8   0.0    39   130   226   332   187   334 0.73 ATPase family associated with various cellular activities (AAA)
AAA_5                PF07728.9    139 sp|P0A6H5|HSLU_ECOLI -            443   8.4e-08   32.0   0.3   1   2   6.7e-09   3.6e-06   26.7   0.0     1    99    52   149    52   206 0.77 AAA domain (dynein-related subfamily)
AAA_22               PF13401.1    131 sp|P0A6H5|HSLU_ECOLI -            443   6.8e-07   29.4   0.0   1   2   3.5e-07   0.00018   21.6   0.0     6    72    52   123    45   136 0.74 AAA domain
ClpB_D2-small        PF10431.4     81 sp|P0A6H5|HSLU_ECOLI -            443   2.5e-06   27.2   0.8   1   1   3.3e-08   1.8e-05   24.5   0.0     1    62   335   405   335   411 0.90 C-terminal, D2-small domain, of ClpB protein
AAA_16               PF13191.1    185 sp|P0A6H5|HSLU_ECOLI -            443   5.1e-06   26.5   0.2   1   1   3.4e-08   1.8e-05   24.7   0.2    23   139    49   164    36   287 0.74 AAA ATPase domain
AAA_17               PF13207.1    121 sp|P0A6H5|HSLU_ECOLI -            443   8.4e-06   26.6   0.7   1   1   5.6e-08     3e-05   24.8   0.2     2    33    53    86    52   266 0.82 AAA domain
Mg_chelatase         PF01078.16   207 sp|P0A6H5|HSLU_ECOLI -            443   0.00017   20.8   0.1   1   1   6.5e-06    0.0034   16.5   0.0    23    55    51    84    46   107 0.78 Magnesium chelatase, subunit ChlI
MCM                  PF00493.18   331 sp|P0A6H5|HSLU_ECOLI -            443   0.00021   20.1   0.1   1   2     1e-05    0.0055   15.5   0.0    16    83     7    76     2    99 0.82 MCM2/3/5 family
AAA_18               PF13238.1    129 sp|P0A6H5|HSLU_ECOLI -            443    0.0003   21.0   0.4   1   1   2.7e-06    0.0014   18.9   0.0     1    23    53    90    53   165 0.69 AAA domain
RuvB_N               PF05496.7    234 sp|P0A6H5|HSLU_ECOLI -            443   0.00083   18.4   0.4   1   2   0.00011     0.061   12.3   0.0    25    76    16    76     3   135 0.78 Holliday junction DNA helicase ruvB N-terminus
Sigma54_activat      PF00158.21   168 sp|P0A6H5|HSLU_ECOLI -            443    0.0011   18.4   0.1   1   2   3.2e-05     0.017   14.5   0.0    20    61    48    86    32    89 0.80 Sigma-54 interaction domain
IstB_IS21            PF01695.12   178 sp|P0A6H5|HSLU_ECOLI -            443    0.0029   17.0   0.0   1   1   1.5e-05    0.0081   15.5   0.0    46    71    49    74    32    90 0.81 IstB-like ATP binding protein
Zeta_toxin           PF06414.7    201 sp|P0A6H5|HSLU_ECOLI -            443     0.003   16.6   0.0   1   1   1.2e-05    0.0066   15.5   0.0    12    53    46    86    36   133 0.84 Zeta toxin
AAA_33               PF13671.1    143 sp|P0A6H5|HSLU_ECOLI -            443    0.0088   15.9   0.0   1   1   3.6e-05     0.019   14.8   0.0     2    32    53    83    53   167 0.73 AAA domain
TIP49                PF06068.8    398 sp|P0A6H5|HSLU_ECOLI -            443     0.019   13.7   0.5   1   1   8.6e-05     0.046   12.4   0.0    20    88    11    86     4   148 0.77 TIP49 C-terminus
AAA_28               PF13521.1    163 sp|P0A6H5|HSLU_ECOLI -            443     0.022   14.6   1.2   1   2   0.00036      0.19   11.6   0.2     2    40    53    92    52   130 0.66 AAA domain
DUF258               PF03193.11   161 sp|P0A6H5|HSLU_ECOLI -            443     0.025   13.7   0.0   1   1   8.5e-05     0.045   12.9   0.0    23    60    38    75    20   206 0.83 Protein of unknown function, DUF258
NTPase_1             PF03266.10   168 sp|P0A6H5|HSLU_ECOLI -            443     0.028   14.1   0.2   1   2    0.0016      0.84    9.3   0.0     2    66    53   116    52   143 0.82 NTPase
G-alpha              PF00503.15   389 sp|P0A6H5|HSLU_ECOLI -            443     0.031   12.9   0.3   1   1   9.9e-05     0.052   12.2   0.3    41   206    33   264     6   273 0.67 G-protein alpha subunit
ATP-synt_ab          PF00006.20   215 sp|P0A6H5|HSLU_ECOLI -            443     0.036   13.5   0.0   1   1    0.0003      0.16   11.4   0.0    17    66    52   106    48   142 0.80 ATP synthase alpha/beta family, nucleotide-binding domain
ResIII               PF04851.10   184 sp|P0A6H5|HSLU_ECOLI -            443     0.038   13.8   0.3   1   1   0.00045      0.24   11.2   0.0    22    51    42    75    14    87 0.73 Type III restriction enzyme, res subunit
SRP54                PF00448.17   196 sp|P0A6H5|HSLU_ECOLI -            443     0.055   12.9   0.0   1   1   0.00022      0.12   11.8   0.0     2    26    51    75    50    83 0.85 SRP54-type protein, GTPase domain
DEAD                 PF00270.24   169 sp|P0A6H5|HSLU_ECOLI -            443      0.08   12.4   1.4   1   1   0.00079      0.42   10.0   1.4    14    33    50    69    36   279 0.67 DEAD/DEAH box helicase
ABC_tran             PF00005.22   137 sp|P0A6H5|HSLU_ECOLI -            443     0.087   13.1   0.0   1   1   0.00048      0.26   11.6   0.0    13    93    52   160    47   222 0.66 ABC transporter
RNA_helicase         PF00910.17   107 sp|P0A6H5|HSLU_ECOLI -            443     0.091   12.9   0.0   1   1    0.0016      0.87    9.7   0.0     1    23    53    75    53   111 0.80 RNA helicase
Proteasome           PF00227.21   190 sp|P0A7B8|HSLV_ECOLI -            176   1.7e-25   89.4   0.2   1   1   4.3e-29   3.2e-25   88.5   0.2     5   186     2   168     2   172 0.94 Proteasome subunit
PspC                 PF04024.7     61 sp|P0A7B8|HSLV_ECOLI -            176      0.03   13.7   0.0   1   1   6.8e-06      0.05   13.0   0.0     2    25    33    56    32    61 0.93 PspC domain
YccV-like            PF08755.6    100 sp|P0AB20|HSPQ_ECOLI -            105   3.9e-25   87.6   0.0   1   1   2.9e-29   4.4e-25   87.5   0.0     2    99     4   101     3   102 0.96 Hemimethylated DNA-binding protein YccV like
MFS_1                PF07690.11   352 sp|P31474|HSRA_ECOLI -            475   7.1e-51  172.9  58.1   1   2   2.6e-49   1.3e-45  155.7  45.0     2   351    17   406    16   407 0.90 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P31474|HSRA_ECOLI -            475   7.1e-51  172.9  58.1   2   2   1.7e-11   8.4e-08   31.3   5.1    73   173   337   452   334   473 0.78 Major Facilitator Superfamily
MFS_3                PF05977.8    524 sp|P31474|HSRA_ECOLI -            475   8.8e-07   27.4  26.8   1   2   2.7e-08   0.00013   20.2  11.4    30   176    31   172    10   192 0.83 Transmembrane secretion effector
MFS_3                PF05977.8    524 sp|P31474|HSRA_ECOLI -            475   8.8e-07   27.4  26.8   2   2   3.7e-06     0.018   13.1   7.4   232   331   276   378   261   444 0.89 Transmembrane secretion effector
HSP90                PF00183.13   531 sp|P0A6Z3|HTPG_ECOLI -            624  1.6e-115  386.5   8.4   2   2  1.1e-117  2.7e-114  382.4   8.0    74   491   212   622   209   624 0.93 Hsp90 protein
HATPase_c_3          PF13589.1    137 sp|P0A6Z3|HTPG_ECOLI -            624   2.3e-15   56.4   1.5   1   1   1.4e-18   3.5e-15   55.8   0.1     2   123    26   171    25   183 0.79 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c            PF02518.21   111 sp|P0A6Z3|HTPG_ECOLI -            624   7.9e-12   44.8   0.1   1   1   5.9e-15   1.4e-11   44.0   0.1     5   109    31   181    27   183 0.84 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Apolipoprotein       PF01442.13   202 sp|P0A6Z3|HTPG_ECOLI -            624    0.0046   16.4   1.5   2   2   2.6e-06    0.0063   16.0   0.2    98   191   486   598   462   602 0.85 Apolipoprotein A1/A4/E domain
PE                   PF00934.15    94 sp|P0A6Z3|HTPG_ECOLI -            624     0.037   14.0   0.8   1   1   3.9e-05     0.097   12.7   0.0    35    62   534   561   526   569 0.88 PE family
Peptidase_M48        PF01435.13   226 sp|P23894|HTPX_ECOLI -            293   8.4e-43  146.5   0.7   1   1     3e-46   1.1e-42  146.1   0.4     8   226    57   285    48   285 0.88 Peptidase family M48
Peptidase_M56        PF05569.6    299 sp|P23894|HTPX_ECOLI -            293   5.1e-05   22.3   0.0   1   1   2.5e-08   9.3e-05   21.5   0.0   160   220    96   157    13   165 0.74 BlaR1 peptidase M56
Peptidase_MA_2       PF13485.1    128 sp|P23894|HTPX_ECOLI -            293    0.0024   17.9   0.0   1   1   1.4e-06    0.0052   16.8   0.0    18    44   126   152   103   164 0.78 Peptidase MA superfamily
DUF2201_N            PF13203.1    292 sp|P23894|HTPX_ECOLI -            293      0.06   12.5   0.0   1   1   2.3e-05     0.087   11.9   0.0    37    72   110   145    78   158 0.80 Putative metallopeptidase domain
Usher                PF00577.15   552 sp|P33129|HTRE_ECOLI -            865  9.3e-161  536.2  27.8   1   1  2.3e-164  1.1e-160  535.9  27.8     1   552   199   771   199   771 0.96 Outer membrane usher protein
PapC_N               PF13954.1    146 sp|P33129|HTRE_ECOLI -            865   4.2e-35  120.4   2.2   1   2   1.1e-38   5.3e-35  120.1   0.8     2   145    34   185    33   186 0.92 PapC N-terminal domain
PapC_C               PF13953.1     68 sp|P33129|HTRE_ECOLI -            865   2.5e-17   62.2   0.1   1   1   1.6e-20   8.1e-17   60.6   0.1     1    65   781   846   781   849 0.92 PapC C-terminal domain
HycI                 PF01750.13   130 sp|P19930|HYAD_ECOLI -            195   5.2e-39  132.7   0.0   1   1   4.3e-43   6.3e-39  132.4   0.0     1   129    23   151    23   152 0.99 Hydrogenase maturation protease
HyaE                 PF07449.6    107 sp|P19931|HYAE_ECOLI -            132   3.9e-40  136.0   0.0   1   1     3e-44   4.5e-40  135.8   0.0     1   107    10   116    10   116 0.99 Hydrogenase-1 expression protein HyaE
HupH_C               PF04809.8    120 sp|P19932|HYAF_ECOLI -            285   1.2e-49  166.9   0.0   1   2   3.3e-11   4.9e-07   29.5   0.0     6    96    50   140    47   155 0.82 HupH hydrogenase expression protein, C-terminal conserved region
HupH_C               PF04809.8    120 sp|P19932|HYAF_ECOLI -            285   1.2e-49  166.9   0.0   2   2   4.5e-44   6.7e-40  135.5   0.0     1   119   163   279   163   280 0.99 HupH hydrogenase expression protein, C-terminal conserved region
HycI                 PF01750.13   130 sp|P37182|HYBD_ECOLI -            164   1.6e-35  121.4   0.1   1   1   1.3e-39   1.9e-35  121.2   0.1     1   129    20   147    20   148 0.97 Hydrogenase maturation protease
NrfD                 PF03916.9    313 sp|P37180|HYBB_ECOLI -            392   8.5e-19   68.1  21.9   1   1   1.1e-22   1.6e-18   67.1  21.9     5   302    45   330    41   337 0.80 Polysulphide reductase, NrfD
DUF3457              PF11939.3    156 sp|P0AAN1|HYBE_ECOLI -            162   1.4e-43  148.0   0.0   1   1   1.1e-47   1.6e-43  147.8   0.0     3   155    10   157     8   158 0.98 Protein of unknown function (DUF3457)
HypA                 PF01155.14   113 sp|P0A703|HYBF_ECOLI -            113   1.7e-35  121.1   6.2   1   1   5.1e-39   1.9e-35  120.9   6.2     1   113     1   113     1   113 0.99 Hydrogenase expression/synthesis hypA family
zf-RING_3            PF14369.1     35 sp|P0A703|HYBF_ECOLI -            113   0.00023   21.0   4.3   1   1   6.3e-08   0.00023   21.0   4.3     2    30    70    95    69    98 0.86 zinc-finger
HupF_HypC            PF01455.13    68 sp|P0AAM7|HYBG_ECOLI -             82   2.8e-26   91.2   0.8   1   1   4.3e-30   3.2e-26   91.0   0.8     1    68     1    73     1    73 0.98 HupF/HypC family
NapD                 PF03927.8     79 sp|P0AAM7|HYBG_ECOLI -             82     0.018   14.8   0.1   1   2   6.1e-06     0.045   13.5   0.0    14    53     6    45     4    50 0.90 NapD protein
Oxidored_q1          PF00361.15   270 sp|P16429|HYCC_ECOLI -            608   4.3e-37  127.8  16.3   2   2   8.6e-41   4.3e-37  127.8  16.3     1   267   124   395   124   398 0.93 NADH-Ubiquinone/plastoquinone (complex I), various chains
UPF0444              PF15475.1     92 sp|P16429|HYCC_ECOLI -            608       9.1    6.4   7.8   1   1   0.00011      0.55   10.3   1.1     9    73   405   476   400   488 0.78 Transmembrane protein C12orf23, UPF0444
Complex1_30kDa       PF00329.14   103 sp|P16431|HYCE_ECOLI -            569   2.8e-28   98.1   0.0   1   1   1.9e-31   6.9e-28   96.9   0.0     1   103    44   150    44   150 0.94 Respiratory-chain NADH dehydrogenase, 30 Kd subunit
Complex1_49kDa       PF00346.14   272 sp|P16431|HYCE_ECOLI -            569   4.9e-27   94.6   0.0   1   2   3.2e-22   1.2e-18   67.1   0.0     6   172   299   464   295   471 0.95 Respiratory-chain NADH dehydrogenase, 49 Kd subunit
Complex1_49kDa       PF00346.14   272 sp|P16431|HYCE_ECOLI -            569   4.9e-27   94.6   0.0   2   2   1.3e-09   4.8e-06   25.7   0.0   209   272   474   537   463   537 0.90 Respiratory-chain NADH dehydrogenase, 49 Kd subunit
NiFeSe_Hases         PF00374.14   507 sp|P16431|HYCE_ECOLI -            569   1.3e-14   53.9   0.1   1   2   6.2e-16   2.3e-12   46.4   0.1     1    68   218   286   218   294 0.91 Nickel-dependent hydrogenase
HycI                 PF01750.13   130 sp|P0AEV9|HYCI_ECOLI -            156   3.1e-27   94.6   0.0   1   1   2.4e-31   3.6e-27   94.4   0.0     7   127    26   139    20   142 0.92 Hydrogenase maturation protease
Oxidored_q6          PF01058.17   131 sp|P16433|HYCG_ECOLI -            255   1.7e-23   82.6   0.1   1   1   1.6e-27   2.4e-23   82.1   0.1     1   129    48   157    48   159 0.94 NADH ubiquinone oxidoreductase, 20 Kd subunit
NADHdh               PF00146.16   311 sp|P16430|HYCD_ECOLI -            307   2.2e-20   72.9   9.8   1   1   1.6e-24   2.4e-20   72.8   9.8    12   296    11   295     1   307 0.81 NADH dehydrogenase
Oxidored_q1          PF00361.15   270 sp|P77416|HYFD_ECOLI -            479   3.8e-50  170.6  13.3   2   3   1.3e-53   3.8e-50  170.6  13.3     1   268   132   400   132   402 0.93 NADH-Ubiquinone/plastoquinone (complex I), various chains
Oxidored_q1_N        PF00662.15    62 sp|P77416|HYFD_ECOLI -            479   1.9e-05   24.1   0.2   1   1   6.2e-09   1.9e-05   24.1   0.2     9    48    63   101    55   121 0.78 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
DUF3302              PF11742.3     78 sp|P77416|HYFD_ECOLI -            479      0.19   11.6   0.1   1   1   6.3e-05      0.19   11.6   0.1     9    39    80   110    73   125 0.79 Protein of unknown function (DUF3302)
NADHdeh_related      PF10125.4    219 sp|P77416|HYFD_ECOLI -            479       3.9    6.5  15.3   1   2   1.9e-05     0.057   12.5   6.9    25   170    77   216    51   220 0.71 NADH dehydrogenase I, subunit N related protein
Oxidored_q1          PF00361.15   270 sp|P77437|HYFF_ECOLI -            526   7.3e-51  172.9  21.4   2   3   9.9e-55   7.3e-51  172.9  21.4     1   268   132   411   132   413 0.97 NADH-Ubiquinone/plastoquinone (complex I), various chains
Oxidored_q1_N        PF00662.15    62 sp|P77437|HYFF_ECOLI -            526    0.0058   16.1   0.0   1   3   7.8e-07    0.0058   16.1   0.0    15    50    66   101    59   104 0.89 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
Complex1_30kDa       PF00329.14   103 sp|P77329|HYFG_ECOLI -            555   2.7e-25   88.5   0.0   1   1   1.1e-28   5.5e-25   87.5   0.0     2   103    48   153    47   153 0.94 Respiratory-chain NADH dehydrogenase, 30 Kd subunit
Complex1_49kDa       PF00346.14   272 sp|P77329|HYFG_ECOLI -            555   3.9e-22   78.5   0.0   1   2     8e-15     4e-11   42.4   0.0     2   163   297   442   296   456 0.94 Respiratory-chain NADH dehydrogenase, 49 Kd subunit
Complex1_49kDa       PF00346.14   272 sp|P77329|HYFG_ECOLI -            555   3.9e-22   78.5   0.0   2   2   1.7e-10   8.3e-07   28.2   0.0   207   272   458   523   443   523 0.89 Respiratory-chain NADH dehydrogenase, 49 Kd subunit
NiFeSe_Hases         PF00374.14   507 sp|P77329|HYFG_ECOLI -            555     9e-16   57.7   0.2   1   3   3.3e-16   1.6e-12   46.9   0.1     1    68   220   288   220   297 0.91 Nickel-dependent hydrogenase
Oxidored_q1          PF00361.15   270 sp|P23482|HYFB_ECOLI -            672     2e-50  171.5  23.7   2   3   2.7e-54     2e-50  171.5  23.7     3   267   133   411   131   414 0.94 NADH-Ubiquinone/plastoquinone (complex I), various chains
Oxidored_q1_N        PF00662.15    62 sp|P23482|HYFB_ECOLI -            672    0.0013   18.2   1.1   1   2   1.8e-07    0.0013   18.2   1.1    16    49    72   105    69   109 0.92 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
Oxidored_q6          PF01058.17   131 sp|P77668|HYFI_ECOLI -            252   5.6e-20   71.2   0.2   1   1   1.7e-23   8.3e-20   70.7   0.2     1   127    44   151    44   155 0.93 NADH ubiquinone oxidoreductase, 20 Kd subunit
Fer4_18              PF13746.1     69 sp|P77668|HYFI_ECOLI -            252     0.034   14.5   0.2   1   2   0.00013      0.65   10.4   0.2    31    59    18    48     5    50 0.78 4Fe-4S dicluster domain
AKAP95               PF04988.7    165 sp|P77668|HYFI_ECOLI -            252     0.061   13.0   0.1   1   1   1.8e-05     0.089   12.5   0.1    60   103    10    53     4    60 0.84 A-kinase anchoring protein 95 (AKAP95)
AP_endonuc_2         PF01261.19   213 sp|P30147|HYI_ECOLI  -            258     2e-32  112.1   0.2   1   1   3.3e-36   2.5e-32  111.9   0.2     1   213    21   219    21   219 0.95 Xylose isomerase-like TIM barrel
DUF3791              PF12668.2     62 sp|P30147|HYI_ECOLI  -            258     0.012   15.1   0.1   1   1   3.9e-06     0.029   13.9   0.1    19    47   158   185   154   194 0.91 Protein of unknown function (DUF3791)
NADHdh               PF00146.16   311 sp|P77858|HYFC_ECOLI -            315   1.2e-24   86.9  14.8   1   1   9.6e-29   1.4e-24   86.7  14.8     6   308    14   314     8   315 0.86 NADH dehydrogenase
HypA                 PF01155.14   113 sp|P0A700|HYPA_ECOLI -            116   9.1e-33  112.3   6.6   1   1   2.7e-36     1e-32  112.1   6.6     1   112     1   113     1   114 0.98 Hydrogenase expression/synthesis hypA family
zf-RING_3            PF14369.1     35 sp|P0A700|HYPA_ECOLI -            116     0.013   15.5   4.8   1   1   4.7e-06     0.017   15.0   3.5     4    32    72    98    69   101 0.82 zinc-finger
zinc-ribbons_6       PF07191.7     70 sp|P0A700|HYPA_ECOLI -            116     0.018   14.8   5.8   2   2   4.8e-06     0.018   14.8   5.8     7    42    60    99    56   103 0.80 zinc-ribbons
zf-B_box             PF00643.19    42 sp|P0A700|HYPA_ECOLI -            116     0.023   14.5   6.6   1   2   2.6e-05     0.098   12.5   3.0     6    25    60    80    56    80 0.87 B-box zinc finger
cobW                 PF02492.14   178 sp|P0AAN3|HYPB_ECOLI -            290   1.1e-48  165.0   0.0   1   1   5.9e-52   1.5e-48  164.6   0.0     2   177   106   267   105   268 0.98 CobW/HypB/UreG, nucleotide-binding domain
Zeta_toxin           PF06414.7    201 sp|P0AAN3|HYPB_ECOLI -            290    0.0076   15.3   0.0   1   1     4e-06      0.01   14.9   0.0    11    52    99   141    88   174 0.86 Zeta toxin
Arf                  PF00025.16   175 sp|P0AAN3|HYPB_ECOLI -            290    0.0082   15.4   0.0   2   2   2.3e-05     0.057   12.6   0.0   114   173   229   286   219   288 0.88 ADP-ribosylation factor family
AAA_16               PF13191.1    185 sp|P0AAN3|HYPB_ECOLI -            290     0.023   14.6   0.0   1   1   1.5e-05     0.036   14.0   0.0    29    64   109   145    86   181 0.81 AAA ATPase domain
AAA_24               PF13479.1    213 sp|P0AAN3|HYPB_ECOLI -            290     0.045   13.3   0.0   1   1   2.4e-05      0.06   12.9   0.0     8    80   109   196   102   212 0.87 AAA domain
Viral_helicase1      PF01443.13   234 sp|P0AAN3|HYPB_ECOLI -            290      0.13   11.7   0.0   1   1   7.9e-05       0.2   11.1   0.0     7    69   113   169   110   173 0.71 Viral (Superfamily 1) RNA helicase
HypD                 PF01924.11   356 sp|P24192|HYPD_ECOLI -            373    9e-154  511.4   0.0   1   1    7e-158    1e-153  511.2   0.0     5   355    13   368     9   369 0.96 Hydrogenase formation hypA family
HupF_HypC            PF01455.13    68 sp|P0AAM3|HYPC_ECOLI -             90   2.1e-25   88.4   0.2   1   1   1.7e-29   2.5e-25   88.2   0.2     1    68     1    72     1    72 0.98 HupF/HypC family
AIRS_C               PF02769.17   153 sp|P24193|HYPE_ECOLI -            336     3e-23   82.5   1.9   1   1   7.4e-27   5.5e-23   81.6   1.9     2   149   166   313   165   315 0.95 AIR synthase related protein, C-terminal domain
AIRS                 PF00586.19    96 sp|P24193|HYPE_ECOLI -            336   1.5e-13   50.7   0.1   1   3   2.1e-17   1.5e-13   50.7   0.1    10    96    44   132    35   132 0.90 AIR synthase related protein, N-terminal domain
Sua5_yciO_yrdC       PF01300.13   179 sp|P30131|HYPF_ECOLI -            750   2.1e-46  157.4   0.0   1   1   3.2e-49   3.6e-46  156.6   0.0     2   178   209   373   208   374 0.95 Telomere recombination
zf-HYPF              PF07503.7     35 sp|P30131|HYPF_ECOLI -            750   7.3e-34  114.8  18.5   1   2   1.1e-19   1.3e-16   59.7   5.3     1    35   108   142   108   142 0.97 HypF finger
zf-HYPF              PF07503.7     35 sp|P30131|HYPF_ECOLI -            750   7.3e-34  114.8  18.5   2   2   1.9e-20   2.2e-17   62.1   2.3     1    34   158   191   158   192 0.96 HypF finger
Acylphosphatase      PF00708.13    91 sp|P30131|HYPF_ECOLI -            750   1.2e-17   63.7   0.0   1   1   2.2e-20   2.5e-17   62.7   0.0     6    91     9    91     1    91 0.87 Acylphosphatase
DUF4379              PF14311.1     55 sp|P30131|HYPF_ECOLI -            750     0.011   15.5   1.7   1   1   3.6e-05     0.041   13.6   0.3    31    55   159   184   155   184 0.95 Domain of unknown function (DUF4379)
Peptidase_M22        PF00814.20   268 sp|P30131|HYPF_ECOLI -            750     0.079   12.4   0.1   2   2   0.00042      0.48    9.8   0.0   140   255   597   721   584   724 0.63 Glycoprotease family
zf-ribbon_3          PF13248.1     26 sp|P30131|HYPF_ECOLI -            750      0.14   11.3  12.1   1   3    0.0002      0.23   10.6   1.8     4    23   108   135   105   135 0.92 zinc-ribbon domain
Asparaginase_2       PF01112.13   319 sp|P37595|IAAA_ECOLI -            321  3.6e-125  416.9   3.7   1   1    3e-129  4.5e-125  416.6   3.7     2   315     3   315     2   317 0.99 Asparaginase
Amidohydro_5         PF13594.1     68 sp|P39377|IADA_ECOLI -            390   1.8e-13   50.0   0.3   1   1   1.2e-16   4.4e-13   48.8   0.3     1    68    28   100    28   100 0.69 Amidohydrolase
Amidohydro_4         PF13147.1    304 sp|P39377|IADA_ECOLI -            390   5.7e-12   46.2   1.0   1   2   1.9e-08   7.2e-05   22.9   0.2     1    57    54   109    54   121 0.84 Amidohydrolase
Amidohydro_4         PF13147.1    304 sp|P39377|IADA_ECOLI -            390   5.7e-12   46.2   1.0   2   2     4e-08   0.00015   21.9   0.0   170   304   196   357   136   357 0.76 Amidohydrolase
Amidohydro_1         PF01979.15   333 sp|P39377|IADA_ECOLI -            390   1.9e-09   37.6   0.2   1   2   7.4e-08   0.00028   20.6   0.1     1    81    59   132    59   206 0.76 Amidohydrolase family
Amidohydro_1         PF01979.15   333 sp|P39377|IADA_ECOLI -            390   1.9e-09   37.6   0.2   2   2   3.6e-06     0.013   15.1   0.0   284   332   298   359   256   360 0.67 Amidohydrolase family
Amidohydro_3         PF07969.6    404 sp|P39377|IADA_ECOLI -            390   2.4e-07   30.3   0.2   1   2   3.4e-06     0.013   14.7   0.3     2    45    60    98    59   274 0.80 Amidohydrolase family
Amidohydro_3         PF07969.6    404 sp|P39377|IADA_ECOLI -            390   2.4e-07   30.3   0.2   2   2   6.2e-06     0.023   13.9   0.0   361   404   316   358   239   358 0.80 Amidohydrolase family
Peptidase_M28        PF04389.12   179 sp|P10423|IAP_ECOLI  -            345   6.2e-31  107.5   0.1   2   2   1.5e-34   1.1e-30  106.6   0.0     2   176   111   318   110   320 0.88 Peptidase family M28
Peptidase_M42        PF05343.9    292 sp|P10423|IAP_ECOLI  -            345   5.6e-06   25.3   0.2   2   2   2.7e-08    0.0002   20.2   0.0   134   180   143   189   136   216 0.87 M42 glutamyl aminopeptidase
BolA                 PF01722.13    76 sp|P0A9W6|IBAG_ECOLI -             84   1.2e-20   73.2   0.0   1   1   1.9e-24   1.4e-20   73.0   0.0     4    76    12    75     7    75 0.90 BolA-like protein
DUF3206              PF11472.3    128 sp|P0A9W6|IBAG_ECOLI -             84     0.063   13.0   0.0   1   1   9.2e-06     0.068   12.9   0.0    14    45     4    35     1    55 0.88 Protein of unknown function (DUF3206)
HSP20                PF00011.16   102 sp|P0C054|IBPA_ECOLI -            137   1.5e-21   76.1   0.1   1   1   2.4e-25   1.8e-21   75.9   0.1     4   102    42   137    39   137 0.94 Hsp20/alpha crystallin family
HSP20                PF00011.16   102 sp|P0C058|IBPB_ECOLI -            142   4.7e-19   68.1   0.0   1   1   7.5e-23   5.6e-19   67.9   0.0     3   102    39   135    37   135 0.94 Hsp20/alpha crystallin family
Imm30                PF15594.1    124 sp|P0C058|IBPB_ECOLI -            142      0.12   12.5   0.0   2   2   3.3e-05      0.25   11.4   0.0    25    95    57   125    42   138 0.81 Immunity protein 30
Ibs_toxin            PF13956.1     19 sp|C1P615|IBSC_ECOLI -             19   4.7e-12   45.3   9.0   1   1   3.3e-16   4.9e-12   45.2   9.0     1    19     1    19     1    19 1.00 Toxin Ibs, type I toxin-antitoxin system
Ibs_toxin            PF13956.1     19 sp|C1P616|IBSD_ECOLI -             19   9.2e-11   41.1   8.7   1   1   6.4e-15   9.5e-11   41.1   8.7     1    19     1    19     1    19 1.00 Toxin Ibs, type I toxin-antitoxin system
Ibs_toxin            PF13956.1     19 sp|C1P617|IBSE_ECOLI -             19   1.2e-12   47.2   7.4   1   1   2.4e-16   1.2e-12   47.1   7.4     1    19     1    19     1    19 1.00 Toxin Ibs, type I toxin-antitoxin system
DUF4492              PF14899.1     64 sp|C1P617|IBSE_ECOLI -             19     0.089   12.3   2.4   1   1   1.7e-05     0.086   12.3   2.4    26    44     1    19     1    19 0.92 Domain of unknown function (DUF4492)
Ibs_toxin            PF13956.1     19 sp|C1P607|IBSA_ECOLI -             19   9.7e-14   50.6   6.2   1   1   6.7e-18     1e-13   50.6   6.2     1    19     1    19     1    19 1.00 Toxin Ibs, type I toxin-antitoxin system
Ibs_toxin            PF13956.1     19 sp|C1P608|IBSB_ECOLI -             18   1.8e-11   43.4   6.9   1   1   1.2e-15   1.8e-11   43.4   6.9     1    19     1    18     1    18 1.00 Toxin Ibs, type I toxin-antitoxin system
Iso_dh               PF00180.15   348 sp|P08200|IDH_ECOLI  -            416    8e-116  386.7   0.0   1   1  6.2e-120  9.2e-116  386.5   0.0     2   348    29   412    28   412 0.98 Isocitrate/isopropylmalate dehydrogenase
NUDIX                PF00293.23   135 sp|Q46822|IDI_ECOLI  -            182   2.5e-18   66.0   0.0   1   1   2.1e-22   3.1e-18   65.7   0.0     2   131    32   161    31   165 0.83 NUDIX domain
adh_short            PF00106.20   167 sp|P0A9P9|IDNO_ECOLI -            254   3.3e-34  118.2   0.3   1   2   2.5e-37   7.5e-34  117.0   0.2     2   166    11   176    10   177 0.94 short chain dehydrogenase
adh_short_C2         PF13561.1    241 sp|P0A9P9|IDNO_ECOLI -            254   1.2e-26   93.9   0.0   1   1   4.6e-30   1.4e-26   93.7   0.0     5   240    18   250    15   251 0.95 Enoyl-(Acyl carrier protein) reductase
KR                   PF08659.5    181 sp|P0A9P9|IDNO_ECOLI -            254   3.8e-12   46.2   0.1   1   1   2.1e-15   6.2e-12   45.5   0.1     3   154    12   163    11   177 0.89 KR domain
DUF1776              PF08643.5    299 sp|P0A9P9|IDNO_ECOLI -            254    0.0088   15.2   0.0   1   1   4.5e-06     0.013   14.6   0.0   108   203   101   193    97   237 0.90 Fungal family of unknown function (DUF1776)
Methyltransf_25      PF13649.1    101 sp|P0A9P9|IDNO_ECOLI -            254     0.097   13.0   0.0   1   1   7.1e-05      0.21   11.9   0.0     7    79    16    97    13   137 0.77 Methyltransferase domain
ADH_N                PF08240.7    109 sp|P39346|IDND_ECOLI -            343   1.1e-25   89.5   3.2   1   1   5.3e-29   1.3e-25   89.2   2.0     3   108    29   139    27   140 0.94 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N           PF00107.21   130 sp|P39346|IDND_ECOLI -            343   1.2e-25   89.5   0.0   1   1   8.9e-29   2.2e-25   88.6   0.0     1   129   180   304   180   305 0.97 Zinc-binding dehydrogenase
ADH_zinc_N_2         PF13602.1    127 sp|P39346|IDND_ECOLI -            343   1.8e-05   25.6   0.0   1   1   1.9e-08   4.7e-05   24.2   0.0     1   116   213   330   213   339 0.72 Zinc-binding dehydrogenase
DapB_N               PF01113.15   124 sp|P39346|IDND_ECOLI -            343    0.0052   16.7   0.1   2   2   8.5e-06     0.021   14.7   0.1     2   101   172   270   171   277 0.85 Dihydrodipicolinate reductase, N-terminus
2-Hacid_dh_C         PF02826.14   178 sp|P39346|IDND_ECOLI -            343     0.019   14.1   0.0   1   1   1.4e-05     0.035   13.2   0.0    28    71   162   206   143   222 0.85 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
ELFV_dehydrog        PF00208.16   244 sp|P39346|IDND_ECOLI -            343      0.04   13.5   0.0   1   1   3.3e-05     0.082   12.4   0.0    23    65   163   203   150   209 0.85 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
GntP_permease        PF02447.11   441 sp|P39344|IDNT_ECOLI -            439    4e-183  608.9  48.3   1   1  9.4e-187  4.6e-183  608.7  48.3     1   440     1   436     1   437 0.99 GntP family permease
CitMHS               PF03600.11   351 sp|P39344|IDNT_ECOLI -            439   1.4e-11   43.6  39.2   1   1   3.2e-15   1.6e-11   43.4  38.6     5   346     8   382     3   391 0.77 Citrate transporter
DctM                 PF06808.7    416 sp|P39344|IDNT_ECOLI -            439   5.4e-06   25.2  18.3   2   2   1.1e-09   5.4e-06   25.2  18.3   200   357   198   379   153   393 0.71 DctM-like transporters
SKI                  PF01202.17   158 sp|P39208|IDNK_ECOLI -            187   4.1e-14   52.7   0.0   1   1   4.6e-17   5.3e-14   52.3   0.0     1   151    12   160    12   171 0.76 Shikimate kinase
AAA_33               PF13671.1    143 sp|P39208|IDNK_ECOLI -            187   5.5e-07   29.5   0.0   1   1   2.2e-09   2.5e-06   27.3   0.0     3   143     7   139     6   139 0.76 AAA domain
AAA_17               PF13207.1    121 sp|P39208|IDNK_ECOLI -            187   7.9e-07   29.9   0.0   1   1   1.5e-09   1.7e-06   28.8   0.0     3   110     7   118     6   181 0.75 AAA domain
APS_kinase           PF01583.15   157 sp|P39208|IDNK_ECOLI -            187    0.0067   16.0   0.0   1   1   1.1e-05     0.013   15.1   0.0     5    94     6    95     2   117 0.81 Adenylylsulphate kinase
AAA_18               PF13238.1    129 sp|P39208|IDNK_ECOLI -            187    0.0083   16.4   0.1   1   1   2.1e-05     0.024   14.9   0.1     2   113     7   120     7   123 0.51 AAA domain
Y2_Tnp               PF04986.8    183 sp|P39208|IDNK_ECOLI -            187     0.036   13.7   0.0   2   2   0.00021      0.24   11.1   0.0    17    54    98   135    93   172 0.84 Putative transposase
DUF2075              PF09848.4    352 sp|P39208|IDNK_ECOLI -            187     0.051   12.5   0.0   1   1   5.1e-05     0.058   12.3   0.0     4    26     6    30     3   106 0.80 Uncharacterized conserved protein (DUF2075)
AAA_16               PF13191.1    185 sp|P39208|IDNK_ECOLI -            187     0.056   13.4   0.0   1   1   0.00013      0.14   12.0   0.0    24    51     3    30     2    70 0.84 AAA ATPase domain
AAA                  PF00004.24   132 sp|P39208|IDNK_ECOLI -            187     0.072   13.2   0.2   1   1   7.8e-05      0.09   12.9   0.2     2    28     7    33     6   149 0.91 ATPase family associated with various cellular activities (AAA)
AAA_22               PF13401.1    131 sp|P39208|IDNK_ECOLI -            187     0.074   13.1   0.0   1   1   0.00014      0.16   12.1   0.0     6    31     5    30     2   171 0.80 AAA domain
Mg_chelatase         PF01078.16   207 sp|P39208|IDNK_ECOLI -            187     0.095   11.8   0.1   1   1   0.00013      0.15   11.2   0.1    24    48     5    29     1    49 0.86 Magnesium chelatase, subunit ChlI
GNAT_acetyltr_2      PF13718.1    196 sp|P39208|IDNK_ECOLI -            187      0.11   11.8   0.1   1   1   0.00014      0.16   11.3   0.1    58   104   110   157   106   184 0.83 GNAT acetyltransferase 2
eIF-1a               PF01176.14    65 sp|P69222|IF1_ECOLI  -             72   5.8e-29   99.3   0.0   1   1   1.3e-32   6.4e-29   99.1   0.0     1    65     5    70     5    70 0.98 Translation initiation factor 1A / IF-1
S1                   PF00575.18    74 sp|P69222|IF1_ECOLI  -             72     0.031   14.3   0.1   1   1   7.3e-06     0.036   14.1   0.1     8    71     9    69     3    72 0.89 S1 RNA binding domain
TOBE                 PF03459.12    64 sp|P69222|IF1_ECOLI  -             72       0.1   12.6   0.0   1   1   3.7e-05      0.18   11.9   0.0    14    60    14    60     8    63 0.76 TOBE domain
GTP_EFTU             PF00009.22   188 sp|P0A705|IF2_ECOLI  -            890     4e-42  143.7   0.9   1   1   3.2e-45     4e-42  143.7   0.9     4   185   392   551   389   554 0.95 Elongation factor Tu GTP binding domain
IF-2                 PF11987.3    109 sp|P0A705|IF2_ECOLI  -            890   6.1e-41  138.7   3.0   1   1   2.1e-43   2.6e-40  136.6   3.0     2   109   673   780   672   780 0.99 Translation-initiation factor 2
IF2_N                PF04760.10    54 sp|P0A705|IF2_ECOLI  -            890   3.5e-22   77.8   5.4   1   2     2e-09   2.4e-06   27.0   0.2     1    54     1    52     1    52 0.95 Translation initiation factor IF-2, N-terminal region
IF2_N                PF04760.10    54 sp|P0A705|IF2_ECOLI  -            890   3.5e-22   77.8   5.4   2   2   3.2e-17   3.9e-14   52.0   1.1     2    54   314   364   313   364 0.97 Translation initiation factor IF-2, N-terminal region
IF2_assoc            PF08364.6     41 sp|P0A705|IF2_ECOLI  -            890   2.5e-17   62.6   3.8   1   1   4.7e-20   5.8e-17   61.4   3.8     1    41    55    95    55    95 0.97 Bacterial translation initiation factor IF-2 associated region
GTP_EFTU_D2          PF03144.20    74 sp|P0A705|IF2_ECOLI  -            890     1e-16   60.8   5.4   1   3   1.6e-10     2e-07   30.9   0.1     1    73   579   641   579   642 0.94 Elongation factor Tu domain 2
GTP_EFTU_D2          PF03144.20    74 sp|P0A705|IF2_ECOLI  -            890     1e-16   60.8   5.4   3   3     2e-10   2.4e-07   30.7   0.7     1    73   810   877   810   878 0.97 Elongation factor Tu domain 2
MMR_HSR1             PF01926.18   116 sp|P0A705|IF2_ECOLI  -            890   4.4e-08   33.0   0.1   1   1   1.1e-10   1.4e-07   31.4   0.1     2   116   394   499   393   499 0.78 50S ribosome-binding GTPase
Miro                 PF08477.8    119 sp|P0A705|IF2_ECOLI  -            890   6.4e-08   33.1   1.0   2   2   4.8e-10   5.9e-07   30.0   0.1     2   119   394   501   393   501 0.89 Miro-like protein
Arf                  PF00025.16   175 sp|P0A705|IF2_ECOLI  -            890   9.8e-06   24.9   0.0   1   1   3.1e-08   3.8e-05   22.9   0.0    19   171   396   548   387   552 0.83 ADP-ribosylation factor family
Ras                  PF00071.17   162 sp|P0A705|IF2_ECOLI  -            890   1.4e-05   24.5   0.0   1   1   1.1e-08   1.4e-05   24.5   0.0     3   158   395   550   393   554 0.82 Ras family
PduV-EutP            PF10662.4    143 sp|P0A705|IF2_ECOLI  -            890   1.7e-05   24.3   0.3   1   1   6.1e-08   7.6e-05   22.2   0.0     4   140   394   547   392   549 0.71 Ethanolamine utilisation - propanediol utilisation
FeoB_N               PF02421.13   156 sp|P0A705|IF2_ECOLI  -            890     7e-05   22.1   0.0   1   1   1.6e-07    0.0002   20.6   0.0     3   156   394   548   392   548 0.83 Ferrous iron transport protein B
SRPRB                PF09439.5    181 sp|P0A705|IF2_ECOLI  -            890    0.0027   16.9   1.6   1   1   3.2e-06    0.0039   16.4   0.0     3    91   391   479   389   515 0.73 Signal recognition particle receptor beta subunit
IF3_C                PF00707.17    88 sp|P0A707|IF3_ECOLI  -            180   1.4e-35  120.8   0.7   1   1   6.3e-39   2.3e-35  120.1   0.7     2    88    91   178    90   178 0.99 Translation initiation factor IF-3, C-terminal domain
IF3_N                PF05198.11    76 sp|P0A707|IF3_ECOLI  -            180   1.3e-33  114.6   0.0   1   1   5.9e-37   2.2e-33  114.0   0.0     3    76    12    85    10    85 0.98 Translation initiation factor IF-3, N-terminal domain
DUF2303              PF10065.4    276 sp|P0A707|IF3_ECOLI  -            180    0.0011   17.9   0.2   1   1   4.2e-07    0.0016   17.3   0.2   186   268    73   155    68   159 0.87 Uncharacterized conserved protein (DUF2303)
DUF461               PF04314.8    110 sp|P0A707|IF3_ECOLI  -            180     0.015   14.9   0.0   1   1   9.4e-06     0.035   13.7   0.0    56   104    81   133    59   139 0.84 Protein of unknown function (DUF461)
IgaA                 PF07095.6    706 sp|P45800|IGAA_ECOLI -            711         0 1237.3   0.0   1   1         0         0 1237.0   0.0     1   705     1   706     1   707 1.00 Intracellular growth attenuator protein IgaA
Bac_DNA_binding      PF00216.16    90 sp|P0A6X7|IHFA_ECOLI -             99   6.7e-30  102.9   0.0   1   1     1e-33   7.5e-30  102.8   0.0     1    89     3    91     3    92 0.98 Bacterial DNA-binding protein
HU-DNA_bdg           PF14848.1    124 sp|P0A6X7|IHFA_ECOLI -             99     0.011   15.4   0.0   1   2   2.5e-05      0.19   11.4   0.0    43    77    16    51     3    57 0.85 DNA-binding domain
Bac_DNA_binding      PF00216.16    90 sp|P0A6Y1|IHFB_ECOLI -             94   2.3e-30  104.4   0.0   1   1   6.7e-34   2.5e-30  104.3   0.0     1    90     1    91     1    91 0.97 Bacterial DNA-binding protein
HU-DNA_bdg           PF14848.1    124 sp|P0A6Y1|IHFB_ECOLI -             94    0.0019   17.9   0.0   1   1   9.3e-07    0.0035   17.0   0.0    30   113     2    89     1    92 0.79 DNA-binding domain
DUF4496              PF14908.1    140 sp|P0A6Y1|IHFB_ECOLI -             94     0.013   15.3   0.0   1   1   4.2e-06     0.016   15.1   0.0     2    53    23    82    22    93 0.78 Domain of unknown function (DUF4496)
GCHY-1               PF02649.9    276 sp|P0A6Y1|IHFB_ECOLI -             94     0.046   12.9   0.0   1   1   1.4e-05     0.052   12.7   0.0    64   131     5    75     2    87 0.79 Type I GTP cyclohydrolase folE2
PALP                 PF00291.20   306 sp|P04968|ILVA_ECOLI -            514   2.1e-69  234.0   2.0   1   1   3.7e-73   2.8e-69  233.7   2.0     5   305    29   315    25   316 0.91 Pyridoxal-phosphate dependent enzyme
Thr_dehydrat_C       PF00585.13    91 sp|P04968|ILVA_ECOLI -            514   7.5e-64  211.3   0.0   1   2   3.6e-35   2.6e-31  107.0   0.0     1    91   329   419   329   419 0.98 C-terminal regulatory domain of Threonine dehydratase
Thr_dehydrat_C       PF00585.13    91 sp|P04968|ILVA_ECOLI -            514   7.5e-64  211.3   0.0   2   2   1.2e-33   8.6e-30  102.1   0.0     2    91   425   512   424   512 0.96 C-terminal regulatory domain of Threonine dehydratase
TPP_enzyme_N         PF02776.13   172 sp|P08142|ILVB_ECOLI -            562   3.2e-59  199.2   0.1   1   1   3.3e-62   9.9e-59  197.6   0.0     2   168    14   179    13   183 0.98 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_C         PF02775.16   153 sp|P08142|ILVB_ECOLI -            562   1.9e-48  163.9   0.1   1   1   1.7e-51     5e-48  162.5   0.1     1   153   390   538   390   538 0.97 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
TPP_enzyme_M         PF00205.17   137 sp|P08142|ILVB_ECOLI -            562   2.8e-43  146.9   1.4   2   2   4.4e-46   1.3e-42  144.7   0.4     1   137   201   334   201   334 0.98 Thiamine pyrophosphate enzyme, central domain
CO_dh                PF02552.11   168 sp|P08142|ILVB_ECOLI -            562     0.012   15.2   0.1   1   1   7.2e-06     0.021   14.3   0.1    17    69   193   247   180   280 0.66 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
XFP_N                PF09364.5    379 sp|P08142|ILVB_ECOLI -            562     0.093   11.2   0.0   1   1   5.2e-05      0.15   10.5   0.0   140   169   417   446   411   463 0.91 XFP N-terminal domain
IlvN                 PF07991.7    165 sp|P05793|ILVC_ECOLI -            491   5.5e-61  204.7   0.1   1   1   4.8e-64     9e-61  204.0   0.1     2   165    35   204    34   204 0.98 Acetohydroxy acid isomeroreductase, catalytic domain
IlvC                 PF01450.14   145 sp|P05793|ILVC_ECOLI -            491   1.2e-55  187.4   0.1   1   2   1.3e-20   2.5e-17   63.1   0.0     1   128   210   337   210   345 0.91 Acetohydroxy acid isomeroreductase, catalytic domain
IlvC                 PF01450.14   145 sp|P05793|ILVC_ECOLI -            491   1.2e-55  187.4   0.1   2   2   7.9e-39   1.5e-35  122.2   0.0    15   145   359   485   349   485 0.93 Acetohydroxy acid isomeroreductase, catalytic domain
2-Hacid_dh_C         PF02826.14   178 sp|P05793|ILVC_ECOLI -            491   0.00037   19.7   0.0   1   1   3.7e-07   0.00068   18.8   0.0    31   105    32   112     7   128 0.81 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
NAD_binding_7        PF13241.1    103 sp|P05793|ILVC_ECOLI -            491     0.002   18.3   0.0   1   1   2.8e-06    0.0052   17.0   0.0     5    75    35   113    32   119 0.82 Putative NAD(P)-binding
ApbA                 PF02558.11   151 sp|P05793|ILVC_ECOLI -            491     0.004   16.6   0.0   1   1   3.8e-06     0.007   15.8   0.0     1    95    40   126    40   153 0.81 Ketopantoate reductase PanE/ApbA
AdoHcyase_NAD        PF00670.16   162 sp|P05793|ILVC_ECOLI -            491     0.034   13.9   0.0   1   1     4e-05     0.075   12.8   0.0    21   120    35   141    26   165 0.69 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
GFO_IDH_MocA         PF01408.17   120 sp|P05793|ILVC_ECOLI -            491     0.071   13.6   0.0   1   1   7.2e-05      0.13   12.7   0.0     2    81    39   117    38   123 0.79 Oxidoreductase family, NAD-binding Rossmann fold
ILVD_EDD             PF00920.16   521 sp|P05791|ILVD_ECOLI -            616  6.4e-195  648.4   1.9   1   1  4.9e-199  7.3e-195  648.3   1.9     1   521    34   607    34   607 0.95 Dehydratase family
Aminotran_4          PF01063.14   231 sp|P0AB80|ILVE_ECOLI -            309   1.2e-46  159.0   0.0   1   1   1.9e-50   1.4e-46  158.8   0.0     3   231    54   289    52   289 0.96 Aminotransferase class IV
G-gamma              PF00631.17    68 sp|P0AB80|ILVE_ECOLI -            309      0.18   11.6   0.0   1   1   4.9e-05      0.36   10.5   0.0     7    36    53    83    49    90 0.89 GGL domain
TPP_enzyme_N         PF02776.13   172 sp|P00892|ILVG_ECOLI -            548   2.8e-58  196.2   0.3   1   2   9.4e-62   2.8e-58  196.2   0.3     1   169     1   167     1   170 0.98 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_C         PF02775.16   153 sp|P00892|ILVG_ECOLI -            548   5.1e-52  175.5   0.6   2   2   5.1e-54   1.5e-50  170.7   0.0     1   153   374   522   374   522 0.98 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
TPP_enzyme_M         PF00205.17   137 sp|P00892|ILVG_ECOLI -            548   2.5e-41  140.6   0.2   1   1   2.1e-44   6.1e-41  139.3   0.2     1   137   186   321   186   321 0.98 Thiamine pyrophosphate enzyme, central domain
POR_N                PF01855.14   230 sp|P00892|ILVG_ECOLI -            548    0.0021   17.6   0.2   1   1   1.1e-06    0.0033   16.9   0.2    38   143    40   147     9   198 0.84 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
XFP_N                PF09364.5    379 sp|P00892|ILVG_ECOLI -            548     0.075   11.5   0.1   1   1   6.5e-05      0.19   10.2   0.1   139   169   400   430   383   434 0.84 XFP N-terminal domain
ALS_ss_C             PF10369.4     75 sp|P00894|ILVH_ECOLI -            163   2.7e-28   97.4   0.6   2   2   1.1e-29   4.2e-26   90.4   0.2     1    75    83   158    83   158 0.99 Small subunit of acetolactate synthase
ACT_5                PF13710.1     63 sp|P00894|ILVH_ECOLI -            163   3.2e-17   62.0   0.1   1   1   1.7e-20   6.4e-17   61.1   0.1     1    63    11    73    11    73 0.98 ACT domain
ACT                  PF01842.20    66 sp|P00894|ILVH_ECOLI -            163   2.2e-14   52.5   0.0   1   1   1.1e-17   3.9e-14   51.7   0.0     2    65     4    68     3    69 0.97 ACT domain
ACT_4                PF13291.1     80 sp|P00894|ILVH_ECOLI -            163   2.2e-05   24.6   0.2   1   2   4.3e-08   0.00016   21.9   0.1     9    78     5    73     3    74 0.89 ACT domain
TPP_enzyme_N         PF02776.13   172 sp|P00893|ILVI_ECOLI -            574     8e-63  210.9   0.7   1   2   1.2e-62   4.6e-59  198.7   0.2     2   167     5   169     4   174 0.98 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_N         PF02776.13   172 sp|P00893|ILVI_ECOLI -            574     8e-63  210.9   0.7   2   2   0.00011      0.41   10.1   0.0    68   159   443   545   428   554 0.76 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_C         PF02775.16   153 sp|P00893|ILVI_ECOLI -            574   1.6e-51  173.8   0.2   3   3   5.6e-53   2.1e-49  167.0   0.0     1   153   394   545   394   545 0.95 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
TPP_enzyme_M         PF00205.17   137 sp|P00893|ILVI_ECOLI -            574   3.9e-45  152.9   0.1   1   1   2.1e-48     8e-45  151.9   0.1     1   137   196   331   196   331 0.99 Thiamine pyrophosphate enzyme, central domain
POR_N                PF01855.14   230 sp|P00893|ILVI_ECOLI -            574    0.0029   17.1   0.0   1   1   1.8e-06    0.0068   15.9   0.0    37    94    43   102    22   193 0.87 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
ACT_5                PF13710.1     63 sp|P0ADF8|ILVN_ECOLI -             96   1.6e-10   40.6   0.1   2   2   5.9e-14   2.9e-10   39.7   0.1     1    63    17    78    17    78 0.97 ACT domain
ACT                  PF01842.20    66 sp|P0ADF8|ILVN_ECOLI -             96   1.2e-08   34.2   0.0   1   1   3.2e-12   1.6e-08   33.8   0.0     2    65    10    73     9    74 0.97 ACT domain
ACT_4                PF13291.1     80 sp|P0ADF8|ILVN_ECOLI -             96   3.2e-06   27.3   0.1   1   1   8.7e-10   4.3e-06   26.9   0.1     7    80     9    80     4    80 0.94 ACT domain
IMPDH                PF00478.20   352 sp|P0ADG7|IMDH_ECOLI -            488  1.6e-148  494.2   6.1   1   1  1.6e-151  1.9e-148  494.1   6.1     2   352     8   473     7   473 0.99 IMP dehydrogenase / GMP reductase domain
CBS                  PF00571.23    57 sp|P0ADG7|IMDH_ECOLI -            488   1.6e-19   69.3   1.6   1   3   2.5e-12   2.9e-09   36.5   0.1     5    52    94   140    91   142 0.93 CBS domain
CBS                  PF00571.23    57 sp|P0ADG7|IMDH_ECOLI -            488   1.6e-19   69.3   1.6   2   3   3.6e-10   4.1e-07   29.6   0.2     2    53   150   203   149   206 0.94 CBS domain
NMO                  PF03060.10   330 sp|P0ADG7|IMDH_ECOLI -            488   7.6e-12   45.0  16.3   1   2   4.5e-08   5.1e-05   22.5   1.1     2   137    32   180    31   252 0.74 Nitronate monooxygenase
NMO                  PF03060.10   330 sp|P0ADG7|IMDH_ECOLI -            488   7.6e-12   45.0  16.3   2   2   1.4e-08   1.6e-05   24.2  11.1   142   229   277   371   200   378 0.71 Nitronate monooxygenase
FMN_dh               PF01070.13   357 sp|P0ADG7|IMDH_ECOLI -            488   1.4e-09   37.2   8.4   1   2   3.2e-11   3.7e-08   32.6   6.0   216   310   260   362   170   368 0.75 FMN-dependent dehydrogenase
His_biosynth         PF00977.16   229 sp|P0ADG7|IMDH_ECOLI -            488   0.00032   20.0   5.2   1   1   3.4e-06    0.0038   16.5   5.2    73   223   219   364   188   370 0.75 Histidine biosynthesis protein
ThiG                 PF05690.9    247 sp|P0ADG7|IMDH_ECOLI -            488    0.0017   17.5   7.1   1   1   1.5e-06    0.0017   17.5   7.1   137   212   284   369   277   374 0.81 Thiazole biosynthesis protein ThiG
DHO_dh               PF01180.16   295 sp|P0ADG7|IMDH_ECOLI -            488    0.0024   16.8   8.9   2   2   2.7e-06    0.0031   16.5   3.0   242   276   330   364   309   371 0.82 Dihydroorotate dehydrogenase
TMP-TENI             PF02581.12   180 sp|P0ADG7|IMDH_ECOLI -            488    0.0032   16.6   3.3   2   2   2.8e-06    0.0032   16.6   3.3    85   178   261   362   253   364 0.84 Thiamine monophosphate synthase/TENI
NanE                 PF04131.9    192 sp|P0ADG7|IMDH_ECOLI -            488    0.0038   16.2   4.0   1   1   1.7e-05     0.019   13.9   4.0    56   178   233   366   229   371 0.67 Putative N-acetylmannosamine-6-phosphate epimerase
Glu_synthase         PF01645.12   368 sp|P0ADG7|IMDH_ECOLI -            488    0.0042   16.0   5.7   1   1   3.7e-06    0.0042   16.0   5.7   244   304   306   362   274   365 0.83 Conserved region in glutamate synthase
PK                   PF00224.16   348 sp|P0ADG7|IMDH_ECOLI -            488     0.021   13.4   1.7   2   3   0.00024      0.27    9.7   0.0     8    54   222   268   216   286 0.83 Pyruvate kinase, barrel domain
Aldolase             PF01081.14   196 sp|P0ADG7|IMDH_ECOLI -            488      0.35   10.0   5.9   2   3   0.00011      0.12   11.4   1.3    26    92   234   302   229   343 0.76 KDPG and KHG aldolase
Kdo                  PF06293.9    206 sp|P27294|INAA_ECOLI -            216   1.4e-69  233.3   0.4   1   1   3.2e-73   1.6e-69  233.1   0.4     1   206    11   213    11   213 0.99 Lipopolysaccharide kinase (Kdo/WaaP) family
APH                  PF01636.18   239 sp|P27294|INAA_ECOLI -            216    0.0076   16.0   0.0   1   1     2e-06      0.01   15.6   0.0    28   126    59   164    25   212 0.61 Phosphotransferase enzyme family
DUF4343              PF14243.1    130 sp|P27294|INAA_ECOLI -            216     0.075   12.8   0.1   1   1   2.4e-05      0.12   12.2   0.1    37    88    85   140    70   151 0.76 Domain of unknown function (DUF4343)
PfkB                 PF00294.19   301 sp|P0AEW6|INGK_ECOLI -            434   2.7e-56  190.9   0.0   1   1   7.6e-60   3.8e-56  190.4   0.0     4   294    55   414    52   422 0.91 pfkB family carbohydrate kinase
TPP_enzyme_M         PF00205.17   137 sp|P0AEW6|INGK_ECOLI -            434     0.039   13.7   0.0   1   1   1.5e-05     0.076   12.7   0.0    26    93   207   280   204   330 0.82 Thiamine pyrophosphate enzyme, central domain
IF2_N                PF04760.10    54 sp|P0AEW6|INGK_ECOLI -            434     0.063   12.9   0.2   1   2     4e-05       0.2   11.3   0.1    24    54    54    83    49    83 0.89 Translation initiation factor IF-2, N-terminal region
DDE_Tnp_1            PF01609.16   213 sp|P0CE58|INH11_ECOLI -            338   1.8e-33  115.9   0.0   1   1   1.4e-36     4e-33  114.7   0.1     5   212   150   324   147   325 0.90 Transposase DDE domain
DUF772               PF05598.6     77 sp|P0CE58|INH11_ECOLI -            338   2.4e-21   75.3   0.3   1   1   8.2e-25   2.4e-21   75.3   0.3     1    77    63   138    63   138 0.99 Transposase domain (DUF772)
DDE_Tnp_1_3          PF13612.1    155 sp|P0CE58|INH11_ECOLI -            338     3e-08   33.5   0.0   1   1     2e-11   5.9e-08   32.6   0.0     5   151   149   304   146   308 0.72 Transposase DDE domain
DDE_Tnp_1_6          PF13751.1    125 sp|P0CE58|INH11_ECOLI -            338   1.2e-06   28.5   0.3   1   1   1.1e-09   3.3e-06   27.1   0.3    59   123   265   326   256   327 0.81 Transposase DDE domain
DDE_Tnp_4            PF13359.1    158 sp|P0CE58|INH11_ECOLI -            338   3.9e-05   23.2   0.0   1   1   2.9e-08   8.6e-05   22.1   0.0     6   153   159   318   154   323 0.65 DDE superfamily endonuclease
DDE_Tnp_1            PF01609.16   213 sp|P0CE57|INH10_ECOLI -            338   1.8e-33  115.9   0.0   1   1   1.4e-36     4e-33  114.7   0.1     5   212   150   324   147   325 0.90 Transposase DDE domain
DUF772               PF05598.6     77 sp|P0CE57|INH10_ECOLI -            338   2.4e-21   75.3   0.3   1   1   8.2e-25   2.4e-21   75.3   0.3     1    77    63   138    63   138 0.99 Transposase domain (DUF772)
DDE_Tnp_1_3          PF13612.1    155 sp|P0CE57|INH10_ECOLI -            338     3e-08   33.5   0.0   1   1     2e-11   5.9e-08   32.6   0.0     5   151   149   304   146   308 0.72 Transposase DDE domain
DDE_Tnp_1_6          PF13751.1    125 sp|P0CE57|INH10_ECOLI -            338   1.2e-06   28.5   0.3   1   1   1.1e-09   3.3e-06   27.1   0.3    59   123   265   326   256   327 0.81 Transposase DDE domain
DDE_Tnp_4            PF13359.1    158 sp|P0CE57|INH10_ECOLI -            338   3.9e-05   23.2   0.0   1   1   2.9e-08   8.6e-05   22.1   0.0     6   153   159   318   154   323 0.65 DDE superfamily endonuclease
HTH_Tnp_IS1          PF12759.2     46 sp|P0CF07|INSA1_ECOLI -             91     8e-30  102.0   0.3   1   1   9.3e-33   1.3e-29  101.3   0.3     1    46    43    88    43    88 0.99 InsA C-terminal domain
Zn_Tnp_IS1           PF03811.8     36 sp|P0CF07|INSA1_ECOLI -             91   1.2e-21   75.9   4.5   1   1   1.7e-24   2.3e-21   74.9   4.5     1    36     1    36     1    36 0.99 InsA N-terminal domain
zinc_ribbon_5        PF13719.1     37 sp|P0CF07|INSA1_ECOLI -             91    0.0017   17.9   2.9   1   1   3.5e-06    0.0047   16.4   2.9     3    36     6    40     5    41 0.83 zinc-ribbon domain
HTH_23               PF13384.1     50 sp|P0CF07|INSA1_ECOLI -             91    0.0051   16.4   0.0   1   1   6.2e-06    0.0083   15.7   0.0     7    40    53    86    51    90 0.92 Homeodomain-like domain
DUF2296              PF10058.4     54 sp|P0CF07|INSA1_ECOLI -             91    0.0074   16.0   1.0   1   1   8.5e-06     0.011   15.4   1.0    23    52     6    37     2    39 0.90 Predicted integral membrane metal-binding protein (DUF2296)
zinc_ribbon_4        PF13717.1     36 sp|P0CF07|INSA1_ECOLI -             91    0.0083   15.8   4.1   1   1   1.7e-05     0.023   14.4   4.1     3    35     6    39     5    40 0.86 zinc-ribbon domain
FdhE                 PF04216.7    293 sp|P0CF07|INSA1_ECOLI -             91    0.0084   15.8   1.8   1   1   8.4e-06     0.011   15.4   1.8   177   212     7    41     3    44 0.87 Protein involved in formate dehydrogenase formation
HTH_28               PF13518.1     52 sp|P0CF07|INSA1_ECOLI -             91    0.0091   15.9   0.0   1   1     1e-05     0.014   15.3   0.0     4    35    55    86    53    90 0.91 Helix-turn-helix domain
DUF2387              PF09526.5     71 sp|P0CF07|INSA1_ECOLI -             91     0.025   14.4   0.2   1   1   2.4e-05     0.032   14.1   0.2    10    47     7    47     5    72 0.76 Probable metal-binding protein (DUF2387)
Zn_Tnp_IS1595        PF12760.2     46 sp|P0CF07|INSA1_ECOLI -             91     0.026   14.3   2.3   1   1   3.7e-05     0.049   13.4   2.3    21    46     8    38     5    38 0.74 Transposase zinc-ribbon domain
HTH_Tnp_IS1          PF12759.2     46 sp|P0CF10|INSA4_ECOLI -             91   2.9e-29  100.2   0.2   1   1   3.7e-32   4.6e-29   99.5   0.2     1    46    43    88    43    88 0.99 InsA C-terminal domain
Zn_Tnp_IS1           PF03811.8     36 sp|P0CF10|INSA4_ECOLI -             91   1.2e-21   75.9   4.5   1   1   1.9e-24   2.3e-21   74.9   4.5     1    36     1    36     1    36 0.99 InsA N-terminal domain
zinc_ribbon_5        PF13719.1     37 sp|P0CF10|INSA4_ECOLI -             91    0.0016   17.9   2.9   1   1   3.8e-06    0.0047   16.4   2.9     3    36     6    40     5    41 0.83 zinc-ribbon domain
HTH_23               PF13384.1     50 sp|P0CF10|INSA4_ECOLI -             91    0.0032   17.0   0.0   1   1   4.2e-06    0.0052   16.3   0.0     7    40    53    86    51    90 0.93 Homeodomain-like domain
DUF2296              PF10058.4     54 sp|P0CF10|INSA4_ECOLI -             91    0.0074   16.0   1.0   1   1   9.3e-06     0.011   15.4   1.0    23    52     6    37     2    39 0.90 Predicted integral membrane metal-binding protein (DUF2296)
zinc_ribbon_4        PF13717.1     36 sp|P0CF10|INSA4_ECOLI -             91    0.0081   15.8   4.1   1   1   1.8e-05     0.023   14.4   4.1     3    35     6    39     5    40 0.86 zinc-ribbon domain
FdhE                 PF04216.7    293 sp|P0CF10|INSA4_ECOLI -             91    0.0085   15.8   1.8   1   1   9.2e-06     0.011   15.4   1.8   177   212     7    41     3    44 0.87 Protein involved in formate dehydrogenase formation
HTH_28               PF13518.1     52 sp|P0CF10|INSA4_ECOLI -             91     0.013   15.5   0.0   1   1   1.6e-05     0.019   14.9   0.0     4    35    55    86    53    90 0.90 Helix-turn-helix domain
Zn_Tnp_IS1595        PF12760.2     46 sp|P0CF10|INSA4_ECOLI -             91     0.025   14.3   2.3   1   1     4e-05     0.049   13.4   2.3    21    46     8    38     5    38 0.74 Transposase zinc-ribbon domain
DUF2387              PF09526.5     71 sp|P0CF10|INSA4_ECOLI -             91     0.025   14.4   0.2   1   1   2.6e-05     0.032   14.1   0.2    10    47     7    47     5    72 0.76 Probable metal-binding protein (DUF2387)
HTH_Tnp_IS630        PF01710.11   120 sp|P0CF10|INSA4_ECOLI -             91      0.15   11.7   0.0   1   1   0.00016       0.2   11.3   0.0     9    42    54    87    49    91 0.91 Transposase
HTH_Tnp_IS1          PF12759.2     46 sp|P0CF11|INSA5_ECOLI -             91     8e-30  102.0   0.3   1   1   9.3e-33   1.3e-29  101.3   0.3     1    46    43    88    43    88 0.99 InsA C-terminal domain
Zn_Tnp_IS1           PF03811.8     36 sp|P0CF11|INSA5_ECOLI -             91   1.2e-21   75.9   4.5   1   1   1.7e-24   2.3e-21   74.9   4.5     1    36     1    36     1    36 0.99 InsA N-terminal domain
zinc_ribbon_5        PF13719.1     37 sp|P0CF11|INSA5_ECOLI -             91    0.0017   17.9   2.9   1   1   3.5e-06    0.0047   16.4   2.9     3    36     6    40     5    41 0.83 zinc-ribbon domain
HTH_23               PF13384.1     50 sp|P0CF11|INSA5_ECOLI -             91    0.0051   16.4   0.0   1   1   6.2e-06    0.0083   15.7   0.0     7    40    53    86    51    90 0.92 Homeodomain-like domain
DUF2296              PF10058.4     54 sp|P0CF11|INSA5_ECOLI -             91    0.0074   16.0   1.0   1   1   8.5e-06     0.011   15.4   1.0    23    52     6    37     2    39 0.90 Predicted integral membrane metal-binding protein (DUF2296)
zinc_ribbon_4        PF13717.1     36 sp|P0CF11|INSA5_ECOLI -             91    0.0083   15.8   4.1   1   1   1.7e-05     0.023   14.4   4.1     3    35     6    39     5    40 0.86 zinc-ribbon domain
FdhE                 PF04216.7    293 sp|P0CF11|INSA5_ECOLI -             91    0.0084   15.8   1.8   1   1   8.4e-06     0.011   15.4   1.8   177   212     7    41     3    44 0.87 Protein involved in formate dehydrogenase formation
HTH_28               PF13518.1     52 sp|P0CF11|INSA5_ECOLI -             91    0.0091   15.9   0.0   1   1     1e-05     0.014   15.3   0.0     4    35    55    86    53    90 0.91 Helix-turn-helix domain
DUF2387              PF09526.5     71 sp|P0CF11|INSA5_ECOLI -             91     0.025   14.4   0.2   1   1   2.4e-05     0.032   14.1   0.2    10    47     7    47     5    72 0.76 Probable metal-binding protein (DUF2387)
Zn_Tnp_IS1595        PF12760.2     46 sp|P0CF11|INSA5_ECOLI -             91     0.026   14.3   2.3   1   1   3.7e-05     0.049   13.4   2.3    21    46     8    38     5    38 0.74 Transposase zinc-ribbon domain
HTH_Tnp_IS1          PF12759.2     46 sp|P0CF08|INSA2_ECOLI -             91   2.9e-29  100.2   0.2   1   1   3.7e-32   4.6e-29   99.5   0.2     1    46    43    88    43    88 0.99 InsA C-terminal domain
Zn_Tnp_IS1           PF03811.8     36 sp|P0CF08|INSA2_ECOLI -             91   1.2e-21   75.9   4.5   1   1   1.9e-24   2.3e-21   74.9   4.5     1    36     1    36     1    36 0.99 InsA N-terminal domain
zinc_ribbon_5        PF13719.1     37 sp|P0CF08|INSA2_ECOLI -             91    0.0016   17.9   2.9   1   1   3.8e-06    0.0047   16.4   2.9     3    36     6    40     5    41 0.83 zinc-ribbon domain
HTH_23               PF13384.1     50 sp|P0CF08|INSA2_ECOLI -             91    0.0032   17.0   0.0   1   1   4.2e-06    0.0052   16.3   0.0     7    40    53    86    51    90 0.93 Homeodomain-like domain
DUF2296              PF10058.4     54 sp|P0CF08|INSA2_ECOLI -             91    0.0074   16.0   1.0   1   1   9.3e-06     0.011   15.4   1.0    23    52     6    37     2    39 0.90 Predicted integral membrane metal-binding protein (DUF2296)
zinc_ribbon_4        PF13717.1     36 sp|P0CF08|INSA2_ECOLI -             91    0.0081   15.8   4.1   1   1   1.8e-05     0.023   14.4   4.1     3    35     6    39     5    40 0.86 zinc-ribbon domain
FdhE                 PF04216.7    293 sp|P0CF08|INSA2_ECOLI -             91    0.0085   15.8   1.8   1   1   9.2e-06     0.011   15.4   1.8   177   212     7    41     3    44 0.87 Protein involved in formate dehydrogenase formation
HTH_28               PF13518.1     52 sp|P0CF08|INSA2_ECOLI -             91     0.013   15.5   0.0   1   1   1.6e-05     0.019   14.9   0.0     4    35    55    86    53    90 0.90 Helix-turn-helix domain
Zn_Tnp_IS1595        PF12760.2     46 sp|P0CF08|INSA2_ECOLI -             91     0.025   14.3   2.3   1   1     4e-05     0.049   13.4   2.3    21    46     8    38     5    38 0.74 Transposase zinc-ribbon domain
DUF2387              PF09526.5     71 sp|P0CF08|INSA2_ECOLI -             91     0.025   14.4   0.2   1   1   2.6e-05     0.032   14.1   0.2    10    47     7    47     5    72 0.76 Probable metal-binding protein (DUF2387)
HTH_Tnp_IS630        PF01710.11   120 sp|P0CF08|INSA2_ECOLI -             91      0.15   11.7   0.0   1   1   0.00016       0.2   11.3   0.0     9    42    54    87    49    91 0.91 Transposase
DDE_Tnp_IS1          PF03400.8    131 sp|P0CF25|INSB1_ECOLI -            167   1.5e-77  258.0   0.8   1   1   1.2e-81   1.8e-77  257.7   0.8     1   131    37   167    37   167 0.99 IS1 transposase
HTH_Tnp_IS1          PF12759.2     46 sp|P0CF09|INSA3_ECOLI -             91   2.9e-29  100.2   0.2   1   1   3.7e-32   4.6e-29   99.5   0.2     1    46    43    88    43    88 0.99 InsA C-terminal domain
Zn_Tnp_IS1           PF03811.8     36 sp|P0CF09|INSA3_ECOLI -             91   1.2e-21   75.9   4.5   1   1   1.9e-24   2.3e-21   74.9   4.5     1    36     1    36     1    36 0.99 InsA N-terminal domain
zinc_ribbon_5        PF13719.1     37 sp|P0CF09|INSA3_ECOLI -             91    0.0016   17.9   2.9   1   1   3.8e-06    0.0047   16.4   2.9     3    36     6    40     5    41 0.83 zinc-ribbon domain
HTH_23               PF13384.1     50 sp|P0CF09|INSA3_ECOLI -             91    0.0032   17.0   0.0   1   1   4.2e-06    0.0052   16.3   0.0     7    40    53    86    51    90 0.93 Homeodomain-like domain
DUF2296              PF10058.4     54 sp|P0CF09|INSA3_ECOLI -             91    0.0074   16.0   1.0   1   1   9.3e-06     0.011   15.4   1.0    23    52     6    37     2    39 0.90 Predicted integral membrane metal-binding protein (DUF2296)
zinc_ribbon_4        PF13717.1     36 sp|P0CF09|INSA3_ECOLI -             91    0.0081   15.8   4.1   1   1   1.8e-05     0.023   14.4   4.1     3    35     6    39     5    40 0.86 zinc-ribbon domain
FdhE                 PF04216.7    293 sp|P0CF09|INSA3_ECOLI -             91    0.0085   15.8   1.8   1   1   9.2e-06     0.011   15.4   1.8   177   212     7    41     3    44 0.87 Protein involved in formate dehydrogenase formation
HTH_28               PF13518.1     52 sp|P0CF09|INSA3_ECOLI -             91     0.013   15.5   0.0   1   1   1.6e-05     0.019   14.9   0.0     4    35    55    86    53    90 0.90 Helix-turn-helix domain
Zn_Tnp_IS1595        PF12760.2     46 sp|P0CF09|INSA3_ECOLI -             91     0.025   14.3   2.3   1   1     4e-05     0.049   13.4   2.3    21    46     8    38     5    38 0.74 Transposase zinc-ribbon domain
DUF2387              PF09526.5     71 sp|P0CF09|INSA3_ECOLI -             91     0.025   14.4   0.2   1   1   2.6e-05     0.032   14.1   0.2    10    47     7    47     5    72 0.76 Probable metal-binding protein (DUF2387)
HTH_Tnp_IS630        PF01710.11   120 sp|P0CF09|INSA3_ECOLI -             91      0.15   11.7   0.0   1   1   0.00016       0.2   11.3   0.0     9    42    54    87    49    91 0.91 Transposase
DDE_Tnp_IS1          PF03400.8    131 sp|P57998|INSB4_ECOLI -            167   3.4e-77  256.8   1.0   1   1   2.7e-81     4e-77  256.5   1.0     1   131    37   167    37   167 0.99 IS1 transposase
DDE_Tnp_IS1          PF03400.8    131 sp|P0CF26|INSB2_ECOLI -            167   4.5e-77  256.4   1.0   1   1   3.6e-81   5.3e-77  256.2   1.0     1   131    37   167    37   167 0.99 IS1 transposase
DDE_Tnp_IS1          PF03400.8    131 sp|P0CF28|INSB5_ECOLI -            167   1.5e-77  258.0   0.8   1   1   1.2e-81   1.8e-77  257.7   0.8     1   131    37   167    37   167 0.99 IS1 transposase
DDE_Tnp_IS1          PF03400.8    131 sp|P0CF27|INSB3_ECOLI -            167   4.5e-77  256.4   1.0   1   1   3.6e-81   5.3e-77  256.2   1.0     1   131    37   167    37   167 0.99 IS1 transposase
DDE_Tnp_IS1          PF03400.8    131 sp|P0CF29|INSB6_ECOLI -            167   1.5e-77  258.0   0.8   1   1   1.2e-81   1.8e-77  257.7   0.8     1   131    37   167    37   167 0.99 IS1 transposase
HTH_Tnp_IS1          PF12759.2     46 sp|P19767|INSA7_ECOLI -             91   6.5e-28   95.9   0.1   1   1   5.5e-31     1e-27   95.2   0.1     1    46    43    88    43    88 0.99 InsA C-terminal domain
Zn_Tnp_IS1           PF03811.8     36 sp|P19767|INSA7_ECOLI -             91   6.3e-20   70.3   2.8   1   1   3.4e-23   6.3e-20   70.3   2.8     1    36     1    36     1    36 0.99 InsA N-terminal domain
zinc_ribbon_5        PF13719.1     37 sp|P19767|INSA7_ECOLI -             91     0.011   15.2   2.7   1   1   1.6e-05      0.03   13.8   2.7     3    36     6    40     5    41 0.82 zinc-ribbon domain
HTH_23               PF13384.1     50 sp|P19767|INSA7_ECOLI -             91     0.017   14.7   0.0   1   1   1.4e-05     0.026   14.1   0.0     6    40    52    86    49    90 0.93 Homeodomain-like domain
zinc_ribbon_4        PF13717.1     36 sp|P19767|INSA7_ECOLI -             91     0.026   14.2   3.3   1   1   3.4e-05     0.064   12.9   3.3     3    35     6    39     5    40 0.86 zinc-ribbon domain
FdhE                 PF04216.7    293 sp|P19767|INSA7_ECOLI -             91     0.035   13.8   1.8   1   1   2.6e-05     0.048   13.3   1.8   177   212     7    41     4    44 0.87 Protein involved in formate dehydrogenase formation
HTH_28               PF13518.1     52 sp|P19767|INSA7_ECOLI -             91     0.058   13.4   0.0   1   1   4.4e-05     0.082   12.9   0.0     4    35    55    86    52    90 0.90 Helix-turn-helix domain
HTH_Tnp_1            PF01527.15    76 sp|P0CF40|INSC1_ECOLI -            121   5.4e-19   67.9   1.1   1   1   4.2e-22     7e-19   67.5   0.6     2    74     8    87     7    89 0.89 Transposase
HTH_28               PF13518.1     52 sp|P0CF40|INSC1_ECOLI -            121   2.7e-06   27.2   0.5   1   1   3.4e-09   5.7e-06   26.2   0.0     1    43    17    60    17    63 0.93 Helix-turn-helix domain
HTH_23               PF13384.1     50 sp|P0CF40|INSC1_ECOLI -            121   3.3e-05   23.3   0.1   1   1   4.1e-08   6.7e-05   22.3   0.1     3    48    14    60    12    62 0.90 Homeodomain-like domain
CENP-B_N             PF04218.8     53 sp|P0CF40|INSC1_ECOLI -            121   0.00046   19.5   0.0   1   1   5.3e-07   0.00087   18.6   0.0     3    44     9    51     8    55 0.86 CENP-B N-terminal DNA-binding domain
HTH_29               PF13551.1    112 sp|P0CF40|INSC1_ECOLI -            121    0.0033   17.5   0.2   1   1     3e-06     0.005   16.9   0.2    11    71    29    88    18   109 0.67 Winged helix-turn helix
BTD                  PF09270.5    158 sp|P0CF40|INSC1_ECOLI -            121     0.016   15.0   0.0   1   1     1e-05     0.016   14.9   0.0    61   122    17    79     2   106 0.79 Beta-trefoil DNA-binding domain
FAD-oxidase_C        PF02913.14   248 sp|P0CF40|INSC1_ECOLI -            121     0.026   13.8   0.2   1   1   1.8e-05      0.03   13.6   0.2    64   152     5    85     2   100 0.90 FAD linked oxidases, C-terminal domain
HTH_Tnp_ISL3         PF13542.1     52 sp|P0CF40|INSC1_ECOLI -            121      0.05   12.7   1.6   1   2   6.4e-05      0.11   11.7   0.1     7    42     8    44     8    46 0.92 Helix-turn-helix domain of transposase family ISL3
HTH_Tnp_1            PF01527.15    76 sp|P0CF42|INSC3_ECOLI -            121   5.4e-19   67.9   1.1   1   1   4.2e-22     7e-19   67.5   0.6     2    74     8    87     7    89 0.89 Transposase
HTH_28               PF13518.1     52 sp|P0CF42|INSC3_ECOLI -            121   2.7e-06   27.2   0.5   1   1   3.4e-09   5.7e-06   26.2   0.0     1    43    17    60    17    63 0.93 Helix-turn-helix domain
HTH_23               PF13384.1     50 sp|P0CF42|INSC3_ECOLI -            121   3.3e-05   23.3   0.1   1   1   4.1e-08   6.7e-05   22.3   0.1     3    48    14    60    12    62 0.90 Homeodomain-like domain
CENP-B_N             PF04218.8     53 sp|P0CF42|INSC3_ECOLI -            121   0.00046   19.5   0.0   1   1   5.3e-07   0.00087   18.6   0.0     3    44     9    51     8    55 0.86 CENP-B N-terminal DNA-binding domain
HTH_29               PF13551.1    112 sp|P0CF42|INSC3_ECOLI -            121    0.0033   17.5   0.2   1   1     3e-06     0.005   16.9   0.2    11    71    29    88    18   109 0.67 Winged helix-turn helix
BTD                  PF09270.5    158 sp|P0CF42|INSC3_ECOLI -            121     0.016   15.0   0.0   1   1     1e-05     0.016   14.9   0.0    61   122    17    79     2   106 0.79 Beta-trefoil DNA-binding domain
FAD-oxidase_C        PF02913.14   248 sp|P0CF42|INSC3_ECOLI -            121     0.026   13.8   0.2   1   1   1.8e-05      0.03   13.6   0.2    64   152     5    85     2   100 0.90 FAD linked oxidases, C-terminal domain
HTH_Tnp_ISL3         PF13542.1     52 sp|P0CF42|INSC3_ECOLI -            121      0.05   12.7   1.6   1   2   6.4e-05      0.11   11.7   0.1     7    42     8    44     8    46 0.92 Helix-turn-helix domain of transposase family ISL3
HTH_Tnp_1            PF01527.15    76 sp|P0CF43|INSC4_ECOLI -            121   5.4e-19   67.9   1.1   1   1   4.2e-22     7e-19   67.5   0.6     2    74     8    87     7    89 0.89 Transposase
HTH_28               PF13518.1     52 sp|P0CF43|INSC4_ECOLI -            121   2.7e-06   27.2   0.5   1   1   3.4e-09   5.7e-06   26.2   0.0     1    43    17    60    17    63 0.93 Helix-turn-helix domain
HTH_23               PF13384.1     50 sp|P0CF43|INSC4_ECOLI -            121   3.3e-05   23.3   0.1   1   1   4.1e-08   6.7e-05   22.3   0.1     3    48    14    60    12    62 0.90 Homeodomain-like domain
CENP-B_N             PF04218.8     53 sp|P0CF43|INSC4_ECOLI -            121   0.00046   19.5   0.0   1   1   5.3e-07   0.00087   18.6   0.0     3    44     9    51     8    55 0.86 CENP-B N-terminal DNA-binding domain
HTH_29               PF13551.1    112 sp|P0CF43|INSC4_ECOLI -            121    0.0033   17.5   0.2   1   1     3e-06     0.005   16.9   0.2    11    71    29    88    18   109 0.67 Winged helix-turn helix
BTD                  PF09270.5    158 sp|P0CF43|INSC4_ECOLI -            121     0.016   15.0   0.0   1   1     1e-05     0.016   14.9   0.0    61   122    17    79     2   106 0.79 Beta-trefoil DNA-binding domain
FAD-oxidase_C        PF02913.14   248 sp|P0CF43|INSC4_ECOLI -            121     0.026   13.8   0.2   1   1   1.8e-05      0.03   13.6   0.2    64   152     5    85     2   100 0.90 FAD linked oxidases, C-terminal domain
HTH_Tnp_ISL3         PF13542.1     52 sp|P0CF43|INSC4_ECOLI -            121      0.05   12.7   1.6   1   2   6.4e-05      0.11   11.7   0.1     7    42     8    44     8    46 0.92 Helix-turn-helix domain of transposase family ISL3
HTH_Tnp_1            PF01527.15    76 sp|P0CF41|INSC2_ECOLI -            121   5.4e-19   67.9   1.1   1   1   4.2e-22     7e-19   67.5   0.6     2    74     8    87     7    89 0.89 Transposase
HTH_28               PF13518.1     52 sp|P0CF41|INSC2_ECOLI -            121   2.7e-06   27.2   0.5   1   1   3.4e-09   5.7e-06   26.2   0.0     1    43    17    60    17    63 0.93 Helix-turn-helix domain
HTH_23               PF13384.1     50 sp|P0CF41|INSC2_ECOLI -            121   3.3e-05   23.3   0.1   1   1   4.1e-08   6.7e-05   22.3   0.1     3    48    14    60    12    62 0.90 Homeodomain-like domain
CENP-B_N             PF04218.8     53 sp|P0CF41|INSC2_ECOLI -            121   0.00046   19.5   0.0   1   1   5.3e-07   0.00087   18.6   0.0     3    44     9    51     8    55 0.86 CENP-B N-terminal DNA-binding domain
HTH_29               PF13551.1    112 sp|P0CF41|INSC2_ECOLI -            121    0.0033   17.5   0.2   1   1     3e-06     0.005   16.9   0.2    11    71    29    88    18   109 0.67 Winged helix-turn helix
BTD                  PF09270.5    158 sp|P0CF41|INSC2_ECOLI -            121     0.016   15.0   0.0   1   1     1e-05     0.016   14.9   0.0    61   122    17    79     2   106 0.79 Beta-trefoil DNA-binding domain
FAD-oxidase_C        PF02913.14   248 sp|P0CF41|INSC2_ECOLI -            121     0.026   13.8   0.2   1   1   1.8e-05      0.03   13.6   0.2    64   152     5    85     2   100 0.90 FAD linked oxidases, C-terminal domain
HTH_Tnp_ISL3         PF13542.1     52 sp|P0CF41|INSC2_ECOLI -            121      0.05   12.7   1.6   1   2   6.4e-05      0.11   11.7   0.1     7    42     8    44     8    46 0.92 Helix-turn-helix domain of transposase family ISL3
HTH_Tnp_IS1          PF12759.2     46 sp|P0CF12|INSA6_ECOLI -             91     8e-30  102.0   0.3   1   1   9.3e-33   1.3e-29  101.3   0.3     1    46    43    88    43    88 0.99 InsA C-terminal domain
Zn_Tnp_IS1           PF03811.8     36 sp|P0CF12|INSA6_ECOLI -             91   1.2e-21   75.9   4.5   1   1   1.7e-24   2.3e-21   74.9   4.5     1    36     1    36     1    36 0.99 InsA N-terminal domain
zinc_ribbon_5        PF13719.1     37 sp|P0CF12|INSA6_ECOLI -             91    0.0017   17.9   2.9   1   1   3.5e-06    0.0047   16.4   2.9     3    36     6    40     5    41 0.83 zinc-ribbon domain
HTH_23               PF13384.1     50 sp|P0CF12|INSA6_ECOLI -             91    0.0051   16.4   0.0   1   1   6.2e-06    0.0083   15.7   0.0     7    40    53    86    51    90 0.92 Homeodomain-like domain
DUF2296              PF10058.4     54 sp|P0CF12|INSA6_ECOLI -             91    0.0074   16.0   1.0   1   1   8.5e-06     0.011   15.4   1.0    23    52     6    37     2    39 0.90 Predicted integral membrane metal-binding protein (DUF2296)
zinc_ribbon_4        PF13717.1     36 sp|P0CF12|INSA6_ECOLI -             91    0.0083   15.8   4.1   1   1   1.7e-05     0.023   14.4   4.1     3    35     6    39     5    40 0.86 zinc-ribbon domain
FdhE                 PF04216.7    293 sp|P0CF12|INSA6_ECOLI -             91    0.0084   15.8   1.8   1   1   8.4e-06     0.011   15.4   1.8   177   212     7    41     3    44 0.87 Protein involved in formate dehydrogenase formation
HTH_28               PF13518.1     52 sp|P0CF12|INSA6_ECOLI -             91    0.0091   15.9   0.0   1   1     1e-05     0.014   15.3   0.0     4    35    55    86    53    90 0.91 Helix-turn-helix domain
DUF2387              PF09526.5     71 sp|P0CF12|INSA6_ECOLI -             91     0.025   14.4   0.2   1   1   2.4e-05     0.032   14.1   0.2    10    47     7    47     5    72 0.76 Probable metal-binding protein (DUF2387)
Zn_Tnp_IS1595        PF12760.2     46 sp|P0CF12|INSA6_ECOLI -             91     0.026   14.3   2.3   1   1   3.7e-05     0.049   13.4   2.3    21    46     8    38     5    38 0.74 Transposase zinc-ribbon domain
HTH_Tnp_1            PF01527.15    76 sp|P0CF44|INSC5_ECOLI -            121   5.4e-19   67.9   1.1   1   1   4.2e-22     7e-19   67.5   0.6     2    74     8    87     7    89 0.89 Transposase
HTH_28               PF13518.1     52 sp|P0CF44|INSC5_ECOLI -            121   2.7e-06   27.2   0.5   1   1   3.4e-09   5.7e-06   26.2   0.0     1    43    17    60    17    63 0.93 Helix-turn-helix domain
HTH_23               PF13384.1     50 sp|P0CF44|INSC5_ECOLI -            121   3.3e-05   23.3   0.1   1   1   4.1e-08   6.7e-05   22.3   0.1     3    48    14    60    12    62 0.90 Homeodomain-like domain
CENP-B_N             PF04218.8     53 sp|P0CF44|INSC5_ECOLI -            121   0.00046   19.5   0.0   1   1   5.3e-07   0.00087   18.6   0.0     3    44     9    51     8    55 0.86 CENP-B N-terminal DNA-binding domain
HTH_29               PF13551.1    112 sp|P0CF44|INSC5_ECOLI -            121    0.0033   17.5   0.2   1   1     3e-06     0.005   16.9   0.2    11    71    29    88    18   109 0.67 Winged helix-turn helix
BTD                  PF09270.5    158 sp|P0CF44|INSC5_ECOLI -            121     0.016   15.0   0.0   1   1     1e-05     0.016   14.9   0.0    61   122    17    79     2   106 0.79 Beta-trefoil DNA-binding domain
FAD-oxidase_C        PF02913.14   248 sp|P0CF44|INSC5_ECOLI -            121     0.026   13.8   0.2   1   1   1.8e-05      0.03   13.6   0.2    64   152     5    85     2   100 0.90 FAD linked oxidases, C-terminal domain
HTH_Tnp_ISL3         PF13542.1     52 sp|P0CF44|INSC5_ECOLI -            121      0.05   12.7   1.6   1   2   6.4e-05      0.11   11.7   0.1     7    42     8    44     8    46 0.92 Helix-turn-helix domain of transposase family ISL3
HTH_Tnp_1            PF01527.15    76 sp|P0CF45|INSC6_ECOLI -            121   5.4e-19   67.9   1.1   1   1   4.2e-22     7e-19   67.5   0.6     2    74     8    87     7    89 0.89 Transposase
HTH_28               PF13518.1     52 sp|P0CF45|INSC6_ECOLI -            121   2.7e-06   27.2   0.5   1   1   3.4e-09   5.7e-06   26.2   0.0     1    43    17    60    17    63 0.93 Helix-turn-helix domain
HTH_23               PF13384.1     50 sp|P0CF45|INSC6_ECOLI -            121   3.3e-05   23.3   0.1   1   1   4.1e-08   6.7e-05   22.3   0.1     3    48    14    60    12    62 0.90 Homeodomain-like domain
CENP-B_N             PF04218.8     53 sp|P0CF45|INSC6_ECOLI -            121   0.00046   19.5   0.0   1   1   5.3e-07   0.00087   18.6   0.0     3    44     9    51     8    55 0.86 CENP-B N-terminal DNA-binding domain
HTH_29               PF13551.1    112 sp|P0CF45|INSC6_ECOLI -            121    0.0033   17.5   0.2   1   1     3e-06     0.005   16.9   0.2    11    71    29    88    18   109 0.67 Winged helix-turn helix
BTD                  PF09270.5    158 sp|P0CF45|INSC6_ECOLI -            121     0.016   15.0   0.0   1   1     1e-05     0.016   14.9   0.0    61   122    17    79     2   106 0.79 Beta-trefoil DNA-binding domain
FAD-oxidase_C        PF02913.14   248 sp|P0CF45|INSC6_ECOLI -            121     0.026   13.8   0.2   1   1   1.8e-05      0.03   13.6   0.2    64   152     5    85     2   100 0.90 FAD linked oxidases, C-terminal domain
HTH_Tnp_ISL3         PF13542.1     52 sp|P0CF45|INSC6_ECOLI -            121      0.05   12.7   1.6   1   2   6.4e-05      0.11   11.7   0.1     7    42     8    44     8    46 0.92 Helix-turn-helix domain of transposase family ISL3
HTH_Tnp_1            PF01527.15    76 sp|P0CF67|INSE2_ECOLI -             99   7.9e-09   35.3   2.9   1   1   3.4e-12     1e-08   35.0   2.9     3    76    11    79     9    79 0.90 Transposase
HTH_23               PF13384.1     50 sp|P0CF67|INSE2_ECOLI -             99    0.0018   17.8   0.0   1   1   1.2e-06    0.0036   16.9   0.0     7    40    20    52    14    60 0.86 Homeodomain-like domain
CCDC-167             PF15188.1     85 sp|P0CF67|INSE2_ECOLI -             99    0.0054   16.6   4.9   1   1   1.9e-06    0.0056   16.5   4.3    13    64    38    89    26    93 0.92 Coiled-coil domain-containing protein 167
HTH_28               PF13518.1     52 sp|P0CF67|INSE2_ECOLI -             99     0.008   16.1   0.1   1   1   6.9e-06     0.021   14.8   0.1    14    34    31    51    22    53 0.85 Helix-turn-helix domain
Bap31                PF05529.7    192 sp|P0CF67|INSE2_ECOLI -             99     0.055   12.9   4.4   1   1   1.9e-05     0.057   12.8   4.4   136   187    48    94     5    99 0.77 B-cell receptor-associated protein 31-like
HTH_Tnp_1            PF01527.15    76 sp|P0CF66|INSE1_ECOLI -             99   7.9e-09   35.3   2.9   1   1   3.4e-12     1e-08   35.0   2.9     3    76    11    79     9    79 0.90 Transposase
HTH_23               PF13384.1     50 sp|P0CF66|INSE1_ECOLI -             99    0.0018   17.8   0.0   1   1   1.2e-06    0.0036   16.9   0.0     7    40    20    52    14    60 0.86 Homeodomain-like domain
CCDC-167             PF15188.1     85 sp|P0CF66|INSE1_ECOLI -             99    0.0054   16.6   4.9   1   1   1.9e-06    0.0056   16.5   4.3    13    64    38    89    26    93 0.92 Coiled-coil domain-containing protein 167
HTH_28               PF13518.1     52 sp|P0CF66|INSE1_ECOLI -             99     0.008   16.1   0.1   1   1   6.9e-06     0.021   14.8   0.1    14    34    31    51    22    53 0.85 Helix-turn-helix domain
Bap31                PF05529.7    192 sp|P0CF66|INSE1_ECOLI -             99     0.055   12.9   4.4   1   1   1.9e-05     0.057   12.8   4.4   136   187    48    94     5    99 0.77 B-cell receptor-associated protein 31-like
HTH_Tnp_1            PF01527.15    76 sp|P0CF68|INSE3_ECOLI -             99   7.9e-09   35.3   2.9   1   1   3.4e-12     1e-08   35.0   2.9     3    76    11    79     9    79 0.90 Transposase
HTH_23               PF13384.1     50 sp|P0CF68|INSE3_ECOLI -             99    0.0018   17.8   0.0   1   1   1.2e-06    0.0036   16.9   0.0     7    40    20    52    14    60 0.86 Homeodomain-like domain
CCDC-167             PF15188.1     85 sp|P0CF68|INSE3_ECOLI -             99    0.0054   16.6   4.9   1   1   1.9e-06    0.0056   16.5   4.3    13    64    38    89    26    93 0.92 Coiled-coil domain-containing protein 167
HTH_28               PF13518.1     52 sp|P0CF68|INSE3_ECOLI -             99     0.008   16.1   0.1   1   1   6.9e-06     0.021   14.8   0.1    14    34    31    51    22    53 0.85 Helix-turn-helix domain
Bap31                PF05529.7    192 sp|P0CF68|INSE3_ECOLI -             99     0.055   12.9   4.4   1   1   1.9e-05     0.057   12.8   4.4   136   187    48    94     5    99 0.77 B-cell receptor-associated protein 31-like
HTH_Tnp_1            PF01527.15    76 sp|P0CF70|INSE5_ECOLI -             99   7.9e-09   35.3   2.9   1   1   3.4e-12     1e-08   35.0   2.9     3    76    11    79     9    79 0.90 Transposase
HTH_23               PF13384.1     50 sp|P0CF70|INSE5_ECOLI -             99    0.0018   17.8   0.0   1   1   1.2e-06    0.0036   16.9   0.0     7    40    20    52    14    60 0.86 Homeodomain-like domain
CCDC-167             PF15188.1     85 sp|P0CF70|INSE5_ECOLI -             99    0.0054   16.6   4.9   1   1   1.9e-06    0.0056   16.5   4.3    13    64    38    89    26    93 0.92 Coiled-coil domain-containing protein 167
HTH_28               PF13518.1     52 sp|P0CF70|INSE5_ECOLI -             99     0.008   16.1   0.1   1   1   6.9e-06     0.021   14.8   0.1    14    34    31    51    22    53 0.85 Helix-turn-helix domain
Bap31                PF05529.7    192 sp|P0CF70|INSE5_ECOLI -             99     0.055   12.9   4.4   1   1   1.9e-05     0.057   12.8   4.4   136   187    48    94     5    99 0.77 B-cell receptor-associated protein 31-like
HTH_Tnp_1            PF01527.15    76 sp|P0CF69|INSE4_ECOLI -             99   7.9e-09   35.3   2.9   1   1   3.4e-12     1e-08   35.0   2.9     3    76    11    79     9    79 0.90 Transposase
HTH_23               PF13384.1     50 sp|P0CF69|INSE4_ECOLI -             99    0.0018   17.8   0.0   1   1   1.2e-06    0.0036   16.9   0.0     7    40    20    52    14    60 0.86 Homeodomain-like domain
CCDC-167             PF15188.1     85 sp|P0CF69|INSE4_ECOLI -             99    0.0054   16.6   4.9   1   1   1.9e-06    0.0056   16.5   4.3    13    64    38    89    26    93 0.92 Coiled-coil domain-containing protein 167
HTH_28               PF13518.1     52 sp|P0CF69|INSE4_ECOLI -             99     0.008   16.1   0.1   1   1   6.9e-06     0.021   14.8   0.1    14    34    31    51    22    53 0.85 Helix-turn-helix domain
Bap31                PF05529.7    192 sp|P0CF69|INSE4_ECOLI -             99     0.055   12.9   4.4   1   1   1.9e-05     0.057   12.8   4.4   136   187    48    94     5    99 0.77 B-cell receptor-associated protein 31-like
rve                  PF00665.21   120 sp|P0CF79|INSF1_ECOLI -            288   9.7e-30  103.1   0.0   1   1   6.8e-33     2e-29  102.1   0.0     3   119   126   240   124   241 0.96 Integrase core domain
rve_2                PF13333.1     52 sp|P0CF79|INSF1_ECOLI -            288   4.1e-20   71.5   1.6   2   2     4e-22   1.2e-18   66.9   0.1     1    52   231   287   231   287 0.98 Integrase core domain
rve_3                PF13683.1     67 sp|P0CF79|INSF1_ECOLI -            288   1.9e-15   56.1   0.0   1   1   1.2e-18   3.7e-15   55.1   0.0     4    67   215   279   212   279 0.96 Integrase core domain
HTH_21               PF13276.1     60 sp|P0CF79|INSF1_ECOLI -            288   2.3e-10   40.3   0.1   1   1   3.4e-13     1e-09   38.2   0.0     4    59    47   101    44   102 0.90 HTH-like domain
DDE_Tnp_IS240        PF13610.1    140 sp|P0CF79|INSF1_ECOLI -            288   3.9e-10   39.8   0.0   1   1   2.3e-13   6.9e-10   39.0   0.0     2   129   130   260   129   272 0.88 DDE domain
rve                  PF00665.21   120 sp|P0CF80|INSF2_ECOLI -            288   9.7e-30  103.1   0.0   1   1   6.8e-33     2e-29  102.1   0.0     3   119   126   240   124   241 0.96 Integrase core domain
rve_2                PF13333.1     52 sp|P0CF80|INSF2_ECOLI -            288   4.1e-20   71.5   1.6   2   2     4e-22   1.2e-18   66.9   0.1     1    52   231   287   231   287 0.98 Integrase core domain
rve_3                PF13683.1     67 sp|P0CF80|INSF2_ECOLI -            288   1.9e-15   56.1   0.0   1   1   1.2e-18   3.7e-15   55.1   0.0     4    67   215   279   212   279 0.96 Integrase core domain
HTH_21               PF13276.1     60 sp|P0CF80|INSF2_ECOLI -            288   2.3e-10   40.3   0.1   1   1   3.4e-13     1e-09   38.2   0.0     4    59    47   101    44   102 0.90 HTH-like domain
DDE_Tnp_IS240        PF13610.1    140 sp|P0CF80|INSF2_ECOLI -            288   3.9e-10   39.8   0.0   1   1   2.3e-13   6.9e-10   39.0   0.0     2   129   130   260   129   272 0.88 DDE domain
rve                  PF00665.21   120 sp|P0CF81|INSF3_ECOLI -            288   9.7e-30  103.1   0.0   1   1   6.8e-33     2e-29  102.1   0.0     3   119   126   240   124   241 0.96 Integrase core domain
rve_2                PF13333.1     52 sp|P0CF81|INSF3_ECOLI -            288   4.1e-20   71.5   1.6   2   2     4e-22   1.2e-18   66.9   0.1     1    52   231   287   231   287 0.98 Integrase core domain
rve_3                PF13683.1     67 sp|P0CF81|INSF3_ECOLI -            288   1.9e-15   56.1   0.0   1   1   1.2e-18   3.7e-15   55.1   0.0     4    67   215   279   212   279 0.96 Integrase core domain
HTH_21               PF13276.1     60 sp|P0CF81|INSF3_ECOLI -            288   2.3e-10   40.3   0.1   1   1   3.4e-13     1e-09   38.2   0.0     4    59    47   101    44   102 0.90 HTH-like domain
DDE_Tnp_IS240        PF13610.1    140 sp|P0CF81|INSF3_ECOLI -            288   3.9e-10   39.8   0.0   1   1   2.3e-13   6.9e-10   39.0   0.0     2   129   130   260   129   272 0.88 DDE domain
rve                  PF00665.21   120 sp|P0CF82|INSF4_ECOLI -            288   9.7e-30  103.1   0.0   1   1   6.8e-33     2e-29  102.1   0.0     3   119   126   240   124   241 0.96 Integrase core domain
rve_2                PF13333.1     52 sp|P0CF82|INSF4_ECOLI -            288   4.1e-20   71.5   1.6   2   2     4e-22   1.2e-18   66.9   0.1     1    52   231   287   231   287 0.98 Integrase core domain
rve_3                PF13683.1     67 sp|P0CF82|INSF4_ECOLI -            288   1.9e-15   56.1   0.0   1   1   1.2e-18   3.7e-15   55.1   0.0     4    67   215   279   212   279 0.96 Integrase core domain
HTH_21               PF13276.1     60 sp|P0CF82|INSF4_ECOLI -            288   2.3e-10   40.3   0.1   1   1   3.4e-13     1e-09   38.2   0.0     4    59    47   101    44   102 0.90 HTH-like domain
DDE_Tnp_IS240        PF13610.1    140 sp|P0CF82|INSF4_ECOLI -            288   3.9e-10   39.8   0.0   1   1   2.3e-13   6.9e-10   39.0   0.0     2   129   130   260   129   272 0.88 DDE domain
rve                  PF00665.21   120 sp|P0CF83|INSF5_ECOLI -            288   9.7e-30  103.1   0.0   1   1   6.8e-33     2e-29  102.1   0.0     3   119   126   240   124   241 0.96 Integrase core domain
rve_2                PF13333.1     52 sp|P0CF83|INSF5_ECOLI -            288   4.1e-20   71.5   1.6   2   2     4e-22   1.2e-18   66.9   0.1     1    52   231   287   231   287 0.98 Integrase core domain
rve_3                PF13683.1     67 sp|P0CF83|INSF5_ECOLI -            288   1.9e-15   56.1   0.0   1   1   1.2e-18   3.7e-15   55.1   0.0     4    67   215   279   212   279 0.96 Integrase core domain
HTH_21               PF13276.1     60 sp|P0CF83|INSF5_ECOLI -            288   2.3e-10   40.3   0.1   1   1   3.4e-13     1e-09   38.2   0.0     4    59    47   101    44   102 0.90 HTH-like domain
DDE_Tnp_IS240        PF13610.1    140 sp|P0CF83|INSF5_ECOLI -            288   3.9e-10   39.8   0.0   1   1   2.3e-13   6.9e-10   39.0   0.0     2   129   130   260   129   272 0.88 DDE domain
Nterm_IS4            PF13006.2     98 sp|P03835|INSG_ECOLI -            442   1.3e-31  108.5   0.1   1   1   4.7e-35   3.5e-31  107.1   0.1     3    97    17   109    15   110 0.97 Insertion element 4 transposase N-terminal
DDE_Tnp_1            PF01609.16   213 sp|P03835|INSG_ECOLI -            442   6.8e-26   91.1   0.0   1   1   1.2e-29   9.2e-26   90.7   0.0     4   213   127   352   124   352 0.85 Transposase DDE domain
DDE_Tnp_1            PF01609.16   213 sp|P0CE49|INSH1_ECOLI -            338   1.8e-33  115.9   0.0   1   1   1.4e-36     4e-33  114.7   0.1     5   212   150   324   147   325 0.90 Transposase DDE domain
DUF772               PF05598.6     77 sp|P0CE49|INSH1_ECOLI -            338   2.4e-21   75.3   0.3   1   1   8.2e-25   2.4e-21   75.3   0.3     1    77    63   138    63   138 0.99 Transposase domain (DUF772)
DDE_Tnp_1_3          PF13612.1    155 sp|P0CE49|INSH1_ECOLI -            338     3e-08   33.5   0.0   1   1     2e-11   5.9e-08   32.6   0.0     5   151   149   304   146   308 0.72 Transposase DDE domain
DDE_Tnp_1_6          PF13751.1    125 sp|P0CE49|INSH1_ECOLI -            338   1.2e-06   28.5   0.3   1   1   1.1e-09   3.3e-06   27.1   0.3    59   123   265   326   256   327 0.81 Transposase DDE domain
DDE_Tnp_4            PF13359.1    158 sp|P0CE49|INSH1_ECOLI -            338   3.9e-05   23.2   0.0   1   1   2.9e-08   8.6e-05   22.1   0.0     6   153   159   318   154   323 0.65 DDE superfamily endonuclease
DDE_Tnp_1            PF01609.16   213 sp|P0CE51|INSH3_ECOLI -            338   1.8e-33  115.9   0.0   1   1   1.4e-36     4e-33  114.7   0.1     5   212   150   324   147   325 0.90 Transposase DDE domain
DUF772               PF05598.6     77 sp|P0CE51|INSH3_ECOLI -            338   2.4e-21   75.3   0.3   1   1   8.2e-25   2.4e-21   75.3   0.3     1    77    63   138    63   138 0.99 Transposase domain (DUF772)
DDE_Tnp_1_3          PF13612.1    155 sp|P0CE51|INSH3_ECOLI -            338     3e-08   33.5   0.0   1   1     2e-11   5.9e-08   32.6   0.0     5   151   149   304   146   308 0.72 Transposase DDE domain
DDE_Tnp_1_6          PF13751.1    125 sp|P0CE51|INSH3_ECOLI -            338   1.2e-06   28.5   0.3   1   1   1.1e-09   3.3e-06   27.1   0.3    59   123   265   326   256   327 0.81 Transposase DDE domain
DDE_Tnp_4            PF13359.1    158 sp|P0CE51|INSH3_ECOLI -            338   3.9e-05   23.2   0.0   1   1   2.9e-08   8.6e-05   22.1   0.0     6   153   159   318   154   323 0.65 DDE superfamily endonuclease
DDE_Tnp_1            PF01609.16   213 sp|P0CE52|INSH4_ECOLI -            338   1.8e-33  115.9   0.0   1   1   1.4e-36     4e-33  114.7   0.1     5   212   150   324   147   325 0.90 Transposase DDE domain
DUF772               PF05598.6     77 sp|P0CE52|INSH4_ECOLI -            338   2.4e-21   75.3   0.3   1   1   8.2e-25   2.4e-21   75.3   0.3     1    77    63   138    63   138 0.99 Transposase domain (DUF772)
DDE_Tnp_1_3          PF13612.1    155 sp|P0CE52|INSH4_ECOLI -            338     3e-08   33.5   0.0   1   1     2e-11   5.9e-08   32.6   0.0     5   151   149   304   146   308 0.72 Transposase DDE domain
DDE_Tnp_1_6          PF13751.1    125 sp|P0CE52|INSH4_ECOLI -            338   1.2e-06   28.5   0.3   1   1   1.1e-09   3.3e-06   27.1   0.3    59   123   265   326   256   327 0.81 Transposase DDE domain
DDE_Tnp_4            PF13359.1    158 sp|P0CE52|INSH4_ECOLI -            338   3.9e-05   23.2   0.0   1   1   2.9e-08   8.6e-05   22.1   0.0     6   153   159   318   154   323 0.65 DDE superfamily endonuclease
DDE_Tnp_1            PF01609.16   213 sp|P0CE50|INSH2_ECOLI -            338   1.8e-33  115.9   0.0   1   1   1.4e-36     4e-33  114.7   0.1     5   212   150   324   147   325 0.90 Transposase DDE domain
DUF772               PF05598.6     77 sp|P0CE50|INSH2_ECOLI -            338   2.4e-21   75.3   0.3   1   1   8.2e-25   2.4e-21   75.3   0.3     1    77    63   138    63   138 0.99 Transposase domain (DUF772)
DDE_Tnp_1_3          PF13612.1    155 sp|P0CE50|INSH2_ECOLI -            338     3e-08   33.5   0.0   1   1     2e-11   5.9e-08   32.6   0.0     5   151   149   304   146   308 0.72 Transposase DDE domain
DDE_Tnp_1_6          PF13751.1    125 sp|P0CE50|INSH2_ECOLI -            338   1.2e-06   28.5   0.3   1   1   1.1e-09   3.3e-06   27.1   0.3    59   123   265   326   256   327 0.81 Transposase DDE domain
DDE_Tnp_4            PF13359.1    158 sp|P0CE50|INSH2_ECOLI -            338   3.9e-05   23.2   0.0   1   1   2.9e-08   8.6e-05   22.1   0.0     6   153   159   318   154   323 0.65 DDE superfamily endonuclease
DDE_Tnp_1            PF01609.16   213 sp|P0CE53|INSH6_ECOLI -            338   5.5e-33  114.3   0.0   1   1   4.1e-36   1.2e-32  113.1   0.1     5   212   150   324   147   325 0.90 Transposase DDE domain
DUF772               PF05598.6     77 sp|P0CE53|INSH6_ECOLI -            338   2.4e-21   75.3   0.3   1   1   8.2e-25   2.4e-21   75.3   0.3     1    77    63   138    63   138 0.99 Transposase domain (DUF772)
DDE_Tnp_1_3          PF13612.1    155 sp|P0CE53|INSH6_ECOLI -            338   2.9e-08   33.6   0.0   1   1   1.9e-11   5.7e-08   32.6   0.0     5   151   149   304   146   308 0.73 Transposase DDE domain
DDE_Tnp_1_6          PF13751.1    125 sp|P0CE53|INSH6_ECOLI -            338   9.5e-07   28.8   0.2   1   1     9e-10   2.7e-06   27.4   0.2    63   123   269   326   256   327 0.80 Transposase DDE domain
DDE_Tnp_4            PF13359.1    158 sp|P0CE53|INSH6_ECOLI -            338   3.1e-05   23.6   0.1   1   1   2.3e-08   6.7e-05   22.5   0.1     6   153   159   318   154   323 0.65 DDE superfamily endonuclease
DDE_Tnp_1            PF01609.16   213 sp|P76071|INSH5_ECOLI -            326   1.7e-33  116.0   0.1   1   1     1e-36     3e-33  115.1   0.1     5   212   138   312   135   313 0.90 Transposase DDE domain
DUF772               PF05598.6     77 sp|P76071|INSH5_ECOLI -            326   2.3e-21   75.4   0.3   1   1   7.7e-25   2.3e-21   75.4   0.3     1    77    51   126    51   126 0.99 Transposase domain (DUF772)
DDE_Tnp_1_3          PF13612.1    155 sp|P76071|INSH5_ECOLI -            326   1.4e-08   34.6   0.0   1   1   9.5e-12   2.8e-08   33.6   0.0     5   151   137   292   134   296 0.75 Transposase DDE domain
DDE_Tnp_1_6          PF13751.1    125 sp|P76071|INSH5_ECOLI -            326   1.1e-06   28.6   0.2   1   1   9.8e-10   2.9e-06   27.2   0.2    63   123   257   314   244   316 0.79 Transposase DDE domain
DDE_Tnp_4            PF13359.1    158 sp|P76071|INSH5_ECOLI -            326     2e-05   24.2   0.0   1   1   1.4e-08     4e-05   23.2   0.0     6   153   147   306   142   311 0.66 DDE superfamily endonuclease
DDE_Tnp_1            PF01609.16   213 sp|P0CE55|INSH8_ECOLI -            338   1.8e-33  115.9   0.0   1   1   1.4e-36     4e-33  114.7   0.1     5   212   150   324   147   325 0.90 Transposase DDE domain
DUF772               PF05598.6     77 sp|P0CE55|INSH8_ECOLI -            338   2.4e-21   75.3   0.3   1   1   8.2e-25   2.4e-21   75.3   0.3     1    77    63   138    63   138 0.99 Transposase domain (DUF772)
DDE_Tnp_1_3          PF13612.1    155 sp|P0CE55|INSH8_ECOLI -            338     3e-08   33.5   0.0   1   1     2e-11   5.9e-08   32.6   0.0     5   151   149   304   146   308 0.72 Transposase DDE domain
DDE_Tnp_1_6          PF13751.1    125 sp|P0CE55|INSH8_ECOLI -            338   1.2e-06   28.5   0.3   1   1   1.1e-09   3.3e-06   27.1   0.3    59   123   265   326   256   327 0.81 Transposase DDE domain
DDE_Tnp_4            PF13359.1    158 sp|P0CE55|INSH8_ECOLI -            338   3.9e-05   23.2   0.0   1   1   2.9e-08   8.6e-05   22.1   0.0     6   153   159   318   154   323 0.65 DDE superfamily endonuclease
DDE_Tnp_1            PF01609.16   213 sp|P0CE54|INSH7_ECOLI -            338   1.8e-33  115.9   0.0   1   1   1.4e-36     4e-33  114.7   0.1     5   212   150   324   147   325 0.90 Transposase DDE domain
DUF772               PF05598.6     77 sp|P0CE54|INSH7_ECOLI -            338   2.4e-21   75.3   0.3   1   1   8.2e-25   2.4e-21   75.3   0.3     1    77    63   138    63   138 0.99 Transposase domain (DUF772)
DDE_Tnp_1_3          PF13612.1    155 sp|P0CE54|INSH7_ECOLI -            338     3e-08   33.5   0.0   1   1     2e-11   5.9e-08   32.6   0.0     5   151   149   304   146   308 0.72 Transposase DDE domain
DDE_Tnp_1_6          PF13751.1    125 sp|P0CE54|INSH7_ECOLI -            338   1.2e-06   28.5   0.3   1   1   1.1e-09   3.3e-06   27.1   0.3    59   123   265   326   256   327 0.81 Transposase DDE domain
DDE_Tnp_4            PF13359.1    158 sp|P0CE54|INSH7_ECOLI -            338   3.9e-05   23.2   0.0   1   1   2.9e-08   8.6e-05   22.1   0.0     6   153   159   318   154   323 0.65 DDE superfamily endonuclease
DDE_Tnp_1            PF01609.16   213 sp|P0CE56|INSH9_ECOLI -            338   1.8e-33  115.9   0.0   1   1   1.4e-36     4e-33  114.7   0.1     5   212   150   324   147   325 0.90 Transposase DDE domain
DUF772               PF05598.6     77 sp|P0CE56|INSH9_ECOLI -            338   2.4e-21   75.3   0.3   1   1   8.2e-25   2.4e-21   75.3   0.3     1    77    63   138    63   138 0.99 Transposase domain (DUF772)
DDE_Tnp_1_3          PF13612.1    155 sp|P0CE56|INSH9_ECOLI -            338     3e-08   33.5   0.0   1   1     2e-11   5.9e-08   32.6   0.0     5   151   149   304   146   308 0.72 Transposase DDE domain
DDE_Tnp_1_6          PF13751.1    125 sp|P0CE56|INSH9_ECOLI -            338   1.2e-06   28.5   0.3   1   1   1.1e-09   3.3e-06   27.1   0.3    59   123   265   326   256   327 0.81 Transposase DDE domain
DDE_Tnp_4            PF13359.1    158 sp|P0CE56|INSH9_ECOLI -            338   3.9e-05   23.2   0.0   1   1   2.9e-08   8.6e-05   22.1   0.0     6   153   159   318   154   323 0.65 DDE superfamily endonuclease
HTH_38               PF13936.1     44 sp|P0CF88|INSI1_ECOLI -            383   7.8e-23   79.7   2.5   1   2   2.9e-05     0.023   14.2   0.0     4    42     4    42     1    43 0.90 Helix-turn-helix domain
HTH_38               PF13936.1     44 sp|P0CF88|INSI1_ECOLI -            383   7.8e-23   79.7   2.5   2   2   2.6e-20   2.1e-17   62.4   1.2     4    44    58    98    55    98 0.97 Helix-turn-helix domain
rve                  PF00665.21   120 sp|P0CF88|INSI1_ECOLI -            383   4.7e-17   62.2   0.0   1   1   1.3e-19     1e-16   61.1   0.0     3   120   228   337   226   337 0.94 Integrase core domain
HTH_23               PF13384.1     50 sp|P0CF88|INSI1_ECOLI -            383   5.6e-07   29.0   0.7   2   3   2.9e-07   0.00022   20.7   0.3    14    42    71    98    48   103 0.77 Homeodomain-like domain
HTH_28               PF13518.1     52 sp|P0CF88|INSI1_ECOLI -            383   6.8e-06   25.9   3.1   2   3   1.3e-05      0.01   15.8   0.4    11    41    73   103    65   115 0.79 Helix-turn-helix domain
HTH_32               PF13565.1     77 sp|P0CF88|INSI1_ECOLI -            383   7.5e-06   26.6   2.1   2   2   9.6e-09   7.5e-06   26.6   2.1     1    77    90   173    90   173 0.69 Homeodomain-like domain
HTH_29               PF13551.1    112 sp|P0CF88|INSI1_ECOLI -            383   7.7e-06   26.0   4.6   2   3     2e-06    0.0016   18.5   1.8     7   108    70   173    64   177 0.82 Winged helix-turn helix
HTH_24               PF13412.1     48 sp|P0CF88|INSI1_ECOLI -            383      0.02   14.2   0.1   2   2   0.00033      0.26   10.7   0.4    16    40    73    97    71    97 0.92 Winged helix-turn-helix DNA-binding
MarR_2               PF12802.2     62 sp|P0CF88|INSI1_ECOLI -            383     0.073   12.7   0.1   1   1     0.001      0.81    9.4   0.3    20    44    73    97    53    99 0.83 MarR family
rve                  PF00665.21   120 sp|P19769|INSK_ECOLI -            283   3.4e-28   98.1   0.0   1   1   2.5e-31   5.3e-28   97.5   0.0     2   120   118   234   117   234 0.97 Integrase core domain
rve_2                PF13333.1     52 sp|P19769|INSK_ECOLI -            283   2.7e-21   75.3   1.1   1   1   3.2e-24   6.7e-21   74.1   1.1     1    51   224   278   224   279 0.96 Integrase core domain
rve_3                PF13683.1     67 sp|P19769|INSK_ECOLI -            283   6.4e-16   57.6   0.0   1   1     1e-18   2.2e-15   55.9   0.0     1    67   205   271   205   271 0.98 Integrase core domain
HTH_21               PF13276.1     60 sp|P19769|INSK_ECOLI -            283   6.2e-15   54.9   4.2   1   2   2.9e-18   6.2e-15   54.9   4.2     6    60    43    96    38    97 0.90 HTH-like domain
DDE_Tnp_IS240        PF13610.1    140 sp|P19769|INSK_ECOLI -            283   8.1e-10   38.8   0.0   1   1   6.9e-13   1.5e-09   37.9   0.0     2   137   123   261   122   264 0.92 DDE domain
HTH_20               PF12840.2     61 sp|P19769|INSK_ECOLI -            283     0.018   14.8   0.0   1   1   1.6e-05     0.035   13.9   0.0    27    50    13    36     1    41 0.80 Helix-turn-helix domain
DDE_Tnp_1_2          PF13586.1     88 sp|P19769|INSK_ECOLI -            283     0.074   13.2   0.1   1   1   0.00018      0.39   10.9   0.1     3    58   187   231   185   235 0.82 Transposase DDE domain
DDE_Tnp_1            PF01609.16   213 sp|P0CF93|INSL3_ECOLI -            370   1.2e-29  103.3   0.0   1   1   1.1e-33   1.6e-29  102.9   0.0     2   213   107   348   106   348 0.96 Transposase DDE domain
HTH_38               PF13936.1     44 sp|P0CF89|INSI3_ECOLI -            383     6e-23   80.1   2.1   1   2   2.9e-05     0.023   14.2   0.0     4    42     4    42     1    43 0.90 Helix-turn-helix domain
HTH_38               PF13936.1     44 sp|P0CF89|INSI3_ECOLI -            383     6e-23   80.1   2.1   2   2   2.6e-20   2.1e-17   62.4   1.2     4    44    58    98    55    98 0.97 Helix-turn-helix domain
rve                  PF00665.21   120 sp|P0CF89|INSI3_ECOLI -            383   1.1e-16   61.0   0.0   1   1   3.1e-19   2.4e-16   59.9   0.0     3   120   228   337   226   337 0.94 Integrase core domain
HTH_23               PF13384.1     50 sp|P0CF89|INSI3_ECOLI -            383   4.6e-07   29.2   0.7   2   3   2.9e-07   0.00022   20.7   0.3    14    42    71    98    48   103 0.77 Homeodomain-like domain
HTH_32               PF13565.1     77 sp|P0CF89|INSI3_ECOLI -            383   7.5e-06   26.6   2.1   2   2   9.6e-09   7.5e-06   26.6   2.1     1    77    90   173    90   173 0.69 Homeodomain-like domain
HTH_29               PF13551.1    112 sp|P0CF89|INSI3_ECOLI -            383   7.8e-06   26.0   4.7   2   3   2.1e-06    0.0016   18.5   1.9     7   108    70   173    64   177 0.82 Winged helix-turn helix
HTH_28               PF13518.1     52 sp|P0CF89|INSI3_ECOLI -            383   2.2e-05   24.3   5.1   2   3   1.3e-05      0.01   15.8   0.4    11    41    73   103    65   115 0.79 Helix-turn-helix domain
HTH_24               PF13412.1     48 sp|P0CF89|INSI3_ECOLI -            383      0.02   14.2   0.1   2   2   0.00033      0.26   10.7   0.4    16    40    73    97    71    97 0.92 Winged helix-turn-helix DNA-binding
MarR_2               PF12802.2     62 sp|P0CF89|INSI3_ECOLI -            383     0.072   12.7   0.1   1   1     0.001      0.81    9.4   0.3    20    44    73    97    53    99 0.83 MarR family
HTH_28               PF13518.1     52 sp|P19768|INSJ_ECOLI -            173   6.2e-23   80.4   0.3   1   2   4.6e-13   8.6e-10   38.4   0.0     1    50    10    60    10    61 0.93 Helix-turn-helix domain
HTH_28               PF13518.1     52 sp|P19768|INSJ_ECOLI -            173   6.2e-23   80.4   0.3   2   2   1.6e-13   3.1e-10   39.8   0.2     2    47    68   115    67   121 0.93 Helix-turn-helix domain
HTH_23               PF13384.1     50 sp|P19768|INSJ_ECOLI -            173   6.1e-11   41.6   0.6   1   2   2.5e-09   4.7e-06   26.0   0.0     5    49     9    54     6    55 0.89 Homeodomain-like domain
HTH_23               PF13384.1     50 sp|P19768|INSJ_ECOLI -            173   6.1e-11   41.6   0.6   2   2   3.7e-05     0.069   12.8   0.4     3    50    64   113    62   113 0.90 Homeodomain-like domain
HTH_29               PF13551.1    112 sp|P19768|INSJ_ECOLI -            173   7.1e-11   42.2   0.3   1   2   1.7e-07   0.00031   20.8   0.0    16    76    26    81    11    88 0.82 Winged helix-turn helix
HTH_29               PF13551.1    112 sp|P19768|INSJ_ECOLI -            173   7.1e-11   42.2   0.3   2   2   2.7e-08   5.1e-05   23.3   0.3     1    76    68   145    68   167 0.78 Winged helix-turn helix
HTH_32               PF13565.1     77 sp|P19768|INSJ_ECOLI -            173   5.8e-08   33.4   0.3   1   2   8.5e-06     0.016   16.0   0.0     2    57    39    88    38    92 0.82 Homeodomain-like domain
HTH_32               PF13565.1     77 sp|P19768|INSJ_ECOLI -            173   5.8e-08   33.4   0.3   2   2   1.2e-05     0.022   15.5   0.2     1    45    96   141    96   167 0.71 Homeodomain-like domain
DUF1153              PF06627.6     90 sp|P19768|INSJ_ECOLI -            173     9e-06   25.4   0.1   2   2   1.6e-06    0.0029   17.4   0.2    39    86    69   117    66   121 0.89 Protein of unknown function (DUF1153)
HTH_Tnp_1            PF01527.15    76 sp|P19768|INSJ_ECOLI -            173   3.3e-05   23.7   0.2   1   2     7e-07    0.0013   18.6   0.0     5    49     4    49     1    63 0.87 Transposase
BrkDBD               PF09607.5     58 sp|P19768|INSJ_ECOLI -            173      0.12   11.9   0.0   1   2   0.00028      0.52    9.9   0.0    11    47    11    44     2    51 0.80 Brinker DNA-binding domain
HTH_38               PF13936.1     44 sp|P0CF90|INSI4_ECOLI -            383     6e-23   80.1   2.1   1   2   2.9e-05     0.023   14.2   0.0     4    42     4    42     1    43 0.90 Helix-turn-helix domain
HTH_38               PF13936.1     44 sp|P0CF90|INSI4_ECOLI -            383     6e-23   80.1   2.1   2   2   2.6e-20   2.1e-17   62.4   1.2     4    44    58    98    55    98 0.97 Helix-turn-helix domain
rve                  PF00665.21   120 sp|P0CF90|INSI4_ECOLI -            383   1.1e-16   61.0   0.0   1   1   3.1e-19   2.4e-16   59.9   0.0     3   120   228   337   226   337 0.94 Integrase core domain
HTH_23               PF13384.1     50 sp|P0CF90|INSI4_ECOLI -            383   4.6e-07   29.2   0.7   2   3   2.9e-07   0.00022   20.7   0.3    14    42    71    98    48   103 0.77 Homeodomain-like domain
HTH_32               PF13565.1     77 sp|P0CF90|INSI4_ECOLI -            383   7.5e-06   26.6   2.1   2   2   9.6e-09   7.5e-06   26.6   2.1     1    77    90   173    90   173 0.69 Homeodomain-like domain
HTH_29               PF13551.1    112 sp|P0CF90|INSI4_ECOLI -            383   7.8e-06   26.0   4.7   2   3   2.1e-06    0.0016   18.5   1.9     7   108    70   173    64   177 0.82 Winged helix-turn helix
HTH_28               PF13518.1     52 sp|P0CF90|INSI4_ECOLI -            383   2.2e-05   24.3   5.1   2   3   1.3e-05      0.01   15.8   0.4    11    41    73   103    65   115 0.79 Helix-turn-helix domain
HTH_24               PF13412.1     48 sp|P0CF90|INSI4_ECOLI -            383      0.02   14.2   0.1   2   2   0.00033      0.26   10.7   0.4    16    40    73    97    71    97 0.92 Winged helix-turn-helix DNA-binding
MarR_2               PF12802.2     62 sp|P0CF90|INSI4_ECOLI -            383     0.072   12.7   0.1   1   1     0.001      0.81    9.4   0.3    20    44    73    97    53    99 0.83 MarR family
DDE_Tnp_1            PF01609.16   213 sp|P0CF91|INSL1_ECOLI -            370   1.2e-29  103.3   0.0   1   1   1.1e-33   1.6e-29  102.9   0.0     2   213   107   348   106   348 0.96 Transposase DDE domain
DDE_Tnp_1            PF01609.16   213 sp|P0CF92|INSL2_ECOLI -            370   1.2e-29  103.3   0.0   1   1   1.1e-33   1.6e-29  102.9   0.0     2   213   107   348   106   348 0.96 Transposase DDE domain
HTH_Tnp_1            PF01527.15    76 sp|P75679|INSN1_ECOLI -            134   6.2e-11   42.1   0.6   1   1   3.8e-14     8e-11   41.7   0.6     1    76    13    88    13    88 0.94 Transposase
HTH_28               PF13518.1     52 sp|P75679|INSN1_ECOLI -            134   0.00046   20.1   0.0   1   1   3.8e-07   0.00081   19.3   0.0     1    38    22    60    22    69 0.88 Helix-turn-helix domain
HTH_23               PF13384.1     50 sp|P75679|INSN1_ECOLI -            134   0.00099   18.6   0.0   1   1   8.6e-07    0.0018   17.8   0.0     7    43    24    60    19    68 0.82 Homeodomain-like domain
LZ_Tnp_IS481         PF13011.1     85 sp|P75679|INSN1_ECOLI -            134    0.0015   18.8   0.0   1   1   1.3e-06    0.0028   17.9   0.0    20    52    29    61    26    84 0.89 leucine-zipper of insertion element IS481
TSC22                PF01166.13    60 sp|P75679|INSN1_ECOLI -            134     0.013   15.4   0.3   1   1   1.1e-05     0.023   14.6   0.3    22    43    78    99    74   112 0.88 TSC-22/dip/bun family
HTH_29               PF13551.1    112 sp|P75679|INSN1_ECOLI -            134     0.027   14.6   0.1   1   1   2.3e-05      0.05   13.7   0.1     7    46    30    68    24    88 0.74 Winged helix-turn helix
Herpes_BLRF2         PF05812.7    118 sp|P75679|INSN1_ECOLI -            134     0.028   14.2   1.5   2   2   1.3e-05     0.028   14.2   1.5     4    29    78   103    75   113 0.82 Herpesvirus BLRF2 protein
HTH_Tnp_1            PF01527.15    76 sp|P39212|INSN2_ECOLI -            100   1.4e-11   44.2   1.0   1   1     8e-15   1.7e-11   43.9   1.0     1    76    13    88    13    88 0.94 Transposase
HTH_28               PF13518.1     52 sp|P39212|INSN2_ECOLI -            100   4.2e-05   23.4   0.0   1   1   3.3e-08     7e-05   22.7   0.0     1    38    22    60    22    70 0.88 Helix-turn-helix domain
HTH_23               PF13384.1     50 sp|P39212|INSN2_ECOLI -            100    0.0001   21.8   0.0   1   1   8.9e-08   0.00019   20.9   0.0     7    43    24    60    19    68 0.82 Homeodomain-like domain
LZ_Tnp_IS481         PF13011.1     85 sp|P39212|INSN2_ECOLI -            100   0.00052   20.2   0.1   1   1   4.4e-07   0.00092   19.5   0.1    20    52    29    61    26    85 0.88 leucine-zipper of insertion element IS481
HTH_29               PF13551.1    112 sp|P39212|INSN2_ECOLI -            100    0.0035   17.4   0.1   1   1   2.7e-06    0.0058   16.7   0.1     6    46    29    68    23    95 0.76 Winged helix-turn helix
HTH_17               PF12728.2     51 sp|P39212|INSN2_ECOLI -            100     0.026   14.7   0.0   1   1   1.8e-05     0.038   14.2   0.0     2    24    35    57    35    86 0.83 Helix-turn-helix domain
Herpes_BLRF2         PF05812.7    118 sp|P39212|INSN2_ECOLI -            100      0.67    9.7   5.8   2   2   0.00024      0.52   10.1   3.3     4    25    78    99    75   100 0.86 Herpesvirus BLRF2 protein
OrfB_IS605           PF01385.14   227 sp|P76102|INSQ_ECOLI -            382     5e-52  176.5   4.1   1   1   3.2e-55   6.8e-52  176.1   4.1     1   224    49   255    49   258 0.98 Probable transposase
OrfB_Zn_ribbon       PF07282.6     69 sp|P76102|INSQ_ECOLI -            382   1.2e-24   85.7   0.3   1   1   1.7e-27   3.7e-24   84.1   0.3     1    67   284   351   284   353 0.98 Putative transposase DNA-binding domain
HTH_OrfB_IS605       PF12323.3     46 sp|P76102|INSQ_ECOLI -            382   6.4e-07   28.6   0.9   1   1     3e-10   6.4e-07   28.6   0.9    19    46     1    28     1    28 0.95 Helix-turn-helix domain
Zn_Tnp_IS1595        PF12760.2     46 sp|P76102|INSQ_ECOLI -            382     0.046   13.5   2.2   1   1   4.7e-05       0.1   12.4   2.2    15    45   297   338   289   339 0.77 Transposase zinc-ribbon domain
DZR                  PF12773.2     50 sp|P76102|INSQ_ECOLI -            382       0.2   11.5   2.3   1   1   0.00013      0.29   11.0   1.3    12    42   311   343   305   349 0.81 Double zinc ribbon
Phage_integrase      PF00589.17   173 sp|P32053|INTA_ECOLI -            413   4.2e-34  117.6   0.0   1   1     2e-37     1e-33  116.4   0.0     3   171   214   378   212   380 0.92 Phage integrase family
DUF4102              PF13356.1     89 sp|P32053|INTA_ECOLI -            413   4.9e-24   84.0   0.3   1   1   2.6e-27   1.3e-23   82.6   0.3     1    87     8    95     8    97 0.91 Domain of unknown function (DUF4102)
Phage_int_SAM_3      PF14659.1     58 sp|P32053|INTA_ECOLI -            413    0.0061   16.8   0.2   1   1   3.7e-06     0.018   15.2   0.0     1    52   106   157   106   161 0.92 Phage integrase, N-terminal SAM-like domain
7tm_7                PF08395.7    372 sp|P76323|INTG_ECOLI -             92     0.031   13.3   0.9   1   1   2.2e-06     0.033   13.2   0.9   180   234    32    89    22    92 0.89 7tm Chemosensory receptor
Phage_integrase      PF00589.17   173 sp|P24218|INTD_ECOLI -            387   1.1e-45  155.4   0.5   2   2   1.4e-48     7e-45  152.7   0.0     1   172   184   355   184   356 0.98 Phage integrase family
DUF134               PF02001.11   106 sp|P24218|INTD_ECOLI -            387     0.033   14.0   0.1   1   2   2.7e-05      0.13   12.1   0.0    31    71    74   114    51   135 0.78 Protein of unknown function  DUF134
Transaldolase        PF00923.14   287 sp|P24218|INTD_ECOLI -            387     0.042   12.9   0.4   1   1   1.5e-05     0.072   12.2   0.4    40   118   103   179    92   191 0.72 Transaldolase
Phage_integrase      PF00589.17   173 sp|P39347|INTB_ECOLI -            396   1.4e-25   89.9   0.0   1   1   3.4e-29   2.6e-25   89.1   0.0     3   171   179   358   177   360 0.93 Phage integrase family
DUF4102              PF13356.1     89 sp|P39347|INTB_ECOLI -            396   2.7e-18   65.6   0.1   1   1   6.9e-22   5.1e-18   64.7   0.1    26    88     2    64     1    65 0.96 Domain of unknown function (DUF4102)
DUF3596              PF12167.3     64 sp|P76056|INTR_ECOLI -            411   7.6e-25   86.2   2.0   1   1   1.7e-28   8.3e-25   86.1   0.1     1    64     5    69     5    69 0.97 Domain of unknown function (DUF3596)
Phage_integrase      PF00589.17   173 sp|P76056|INTR_ECOLI -            411   2.1e-22   79.6   0.0   1   1   9.9e-26   4.9e-22   78.4   0.0     4   166   203   391   201   397 0.83 Phage integrase family
Phage_int_SAM_3      PF14659.1     58 sp|P76056|INTR_ECOLI -            411   1.2e-05   25.5   1.8   1   1   7.7e-09   3.8e-05   23.8   1.8     1    58    82   139    82   139 0.94 Phage integrase, N-terminal SAM-like domain
Phage_integrase      PF00589.17   173 sp|P71298|INTF_ECOLI -            466   8.7e-20   71.0   0.0   1   1   2.5e-23   1.9e-19   70.0   0.0     3   167   273   433   271   435 0.87 Phage integrase family
DUF4102              PF13356.1     89 sp|P71298|INTF_ECOLI -            466   2.8e-15   55.9   0.0   1   2     4e-18     3e-14   52.6   0.1    11    85    43   119    33   123 0.87 Domain of unknown function (DUF4102)
Phage_integrase      PF00589.17   173 sp|P37326|INTS_ECOLI -            385   1.2e-31  109.6   0.0   1   1   3.6e-35   1.8e-31  109.1   0.0     2   171   199   365   198   367 0.97 Phage integrase family
DUF4102              PF13356.1     89 sp|P37326|INTS_ECOLI -            385     2e-25   88.4   0.1   1   1   8.4e-29   4.1e-25   87.4   0.1     1    87     2    87     2    89 0.97 Domain of unknown function (DUF4102)
Phage_int_SAM_3      PF14659.1     58 sp|P37326|INTS_ECOLI -            385   0.00013   22.1   0.0   1   1   5.6e-08   0.00028   21.0   0.0     2    54    93   145    92   148 0.93 Phage integrase, N-terminal SAM-like domain
Phage_integrase      PF00589.17   173 sp|P76168|INTQ_ECOLI -            385   6.1e-20   71.5   0.1   1   1   4.8e-23   1.4e-19   70.4   0.1     3   167   159   352   158   357 0.88 Phage integrase family
DUF3596              PF12167.3     64 sp|P76168|INTQ_ECOLI -            385   1.1e-05   24.8   0.0   1   1   8.5e-09   2.5e-05   23.6   0.0    40    64     2    26     1    26 0.94 Domain of unknown function (DUF3596)
Phage_int_SAM_3      PF14659.1     58 sp|P76168|INTQ_ECOLI -            385   0.00033   20.8   1.0   1   1   3.9e-07    0.0012   19.0   0.2     1    43    39    80    39    95 0.94 Phage integrase, N-terminal SAM-like domain
TnpB_IS66            PF05717.8    108 sp|P76168|INTQ_ECOLI -            385     0.015   14.7   0.0   1   1   1.2e-05     0.035   13.5   0.0    56   104   204   253   161   257 0.82 IS66 Orf2 like protein
Phage_int_SAM_4      PF13495.1     85 sp|P76168|INTQ_ECOLI -            385      0.11   12.8   0.5   1   1   0.00025      0.74   10.1   0.1    13    82    54   136    43   138 0.69 Phage integrase, N-terminal SAM-like domain
Phage_integ_N        PF09003.5     76 sp|P75969|INTE_ECOLI -            375   1.4e-28   98.4   0.4   1   1     8e-32     3e-28   97.3   0.4     1    74     1    73     1    75 0.97 Bacteriophage lambda integrase, N-terminal domain
Phage_integrase      PF00589.17   173 sp|P75969|INTE_ECOLI -            375   1.7e-15   57.0   0.7   2   2     7e-19   2.6e-15   56.5   0.2     2   169   193   365   192   369 0.83 Phage integrase family
TGS                  PF02824.16    60 sp|P75969|INTE_ECOLI -            375    0.0007   19.3   0.0   1   1   4.4e-07    0.0016   18.1   0.0    12    46   195   229   173   238 0.83 TGS domain
DUF4102              PF13356.1     89 sp|P76542|INTZ_ECOLI -            402     2e-25   88.4   0.9   1   1     6e-29     3e-25   87.9   0.0     1    88     6    94     6    95 0.95 Domain of unknown function (DUF4102)
Phage_integrase      PF00589.17   173 sp|P76542|INTZ_ECOLI -            402   9.1e-25   87.3   0.0   1   1   3.1e-28   1.5e-24   86.5   0.0     5   170   213   372   209   375 0.95 Phage integrase family
Phage_int_SAM_3      PF14659.1     58 sp|P76542|INTZ_ECOLI -            402   0.00012   22.2   0.0   1   1   4.8e-08   0.00024   21.3   0.0     2    51   105   154   104   161 0.94 Phage integrase, N-terminal SAM-like domain
Oligomerisation      PF02410.10   100 sp|P0AAT6|IOJAP_ECOLI -            105   3.8e-33  113.4   0.2   1   1   2.9e-37   4.2e-33  113.3   0.2     4   100     9   104     6   104 0.97 Oligomerisation domain
Pyrophosphatase      PF00719.14   156 sp|P0A7A9|IPYR_ECOLI -            176   7.7e-61  204.1   0.1   1   1   5.9e-65   8.8e-61  203.9   0.1     2   155    18   174    17   175 0.98 Inorganic pyrophosphatase
GPW_gp25             PF04965.9     99 sp|P39375|IRAD_ECOLI -            130   9.2e-12   44.3   0.0   1   1   1.6e-15   1.2e-11   43.9   0.0     3    94    18   108    16   113 0.90 Gene 25-like lysozyme
KAT11                PF08214.6    347 sp|P39375|IRAD_ECOLI -            130     0.044   12.8   0.1   1   1   7.3e-06     0.054   12.5   0.1   151   191    54    93    42   108 0.85 Histone acetylation protein
PmrD                 PF11183.3     82 sp|P75987|IRAM_ECOLI -            107       0.1   12.4   0.0   1   2   1.3e-05      0.19   11.5   0.0    20    77    18    72     1    77 0.69 Polymyxin resistance protein PmrD
Anti-adapt_IraP      PF10796.4     87 sp|P0AAN9|IRAP_ECOLI -             86   1.8e-37  127.5   2.4   1   1     4e-41     2e-37  127.4   2.4     1    87     1    86     1    86 0.99 Sigma-S stabilisation anti-adaptor protein
DUF552               PF04472.7     73 sp|P0AAN9|IRAP_ECOLI -             86    0.0033   17.3   0.1   1   1   9.4e-07    0.0047   16.8   0.1     7    52    14    60    10    64 0.87 Protein of unknown function (DUF552)
DUF2594              PF10769.4     74 sp|P0AAN9|IRAP_ECOLI -             86    0.0042   17.1   0.1   1   1     1e-06     0.005   16.8   0.1    10    52    17    59    10    81 0.89 Protein of unknown function (DUF2594)
Fe-S_biosyn          PF01521.15   112 sp|P0AAC8|ISCA_ECOLI -            107   5.5e-26   90.7   0.0   1   1   4.1e-30   6.1e-26   90.5   0.0     1   112     1   103     1   103 0.99 Iron-sulphur cluster biosynthesis
Aminotran_5          PF00266.14   371 sp|P0A6B7|ISCS_ECOLI -            404   7.8e-93  311.1   0.0   1   1   3.7e-96   9.1e-93  310.9   0.0     1   370     5   368     5   369 0.97 Aminotransferase class-V
Beta_elim_lyase      PF01212.16   290 sp|P0A6B7|ISCS_ECOLI -            404   5.1e-07   29.1   0.1   1   1     3e-10   7.5e-07   28.5   0.1    34   231    54   239    39   297 0.75 Beta-eliminating lyase
Cys_Met_Meta_PP      PF01053.15   386 sp|P0A6B7|ISCS_ECOLI -            404   9.7e-06   24.1   0.0   1   2     1e-08   2.5e-05   22.7   0.0    58   185    52   188    25   211 0.76 Cys/Met metabolism PLP-dependent enzyme
DegT_DnrJ_EryC1      PF01041.12   363 sp|P0A6B7|ISCS_ECOLI -            404   0.00085   18.4   0.2   1   1   5.7e-07    0.0014   17.7   0.2    43   152    69   186    48   190 0.78 DegT/DnrJ/EryC1/StrS aminotransferase family
DUF2674              PF10879.3     67 sp|P0A6B7|ISCS_ECOLI -            404     0.029   14.1   0.1   1   1   3.7e-05     0.091   12.5   0.0     8    58    98   148    91   151 0.90 Protein of unknown function (DUF2674)
SOR                  PF07682.6    303 sp|P0A6B7|ISCS_ECOLI -            404      0.13   10.8   0.0   1   1     9e-05      0.22   10.0   0.0    50    89   249   288   210   292 0.74 Sulphur oxygenase reductase
NifU_N               PF01592.11   127 sp|P0ACD4|ISCU_ECOLI -            128   7.7e-56  187.4   0.2   1   1   5.7e-60   8.5e-56  187.3   0.2     1   125     2   126     2   128 0.97 NifU-like N terminal domain
Fe-S_assembly        PF04384.8     64 sp|P0C0L9|ISCX_ECOLI -             66   9.1e-32  109.2   1.7   1   1   6.7e-36   9.9e-32  109.1   1.7     1    64     3    66     3    66 0.98 Iron-sulphur cluster assembly
polyprenyl_synt      PF00348.12   260 sp|P22939|ISPA_ECOLI -            299   6.1e-92  307.1   0.4   1   1   4.8e-96   7.1e-92  306.9   0.4     2   259    33   294    32   295 0.98 Polyprenyl synthetase
polyprenyl_synt      PF00348.12   260 sp|P0AD57|ISPB_ECOLI -            323     4e-90  301.1   0.0   1   1   6.5e-94   4.8e-90  300.9   0.0     2   257    32   282    31   285 0.97 Polyprenyl synthetase
SQS_PSY              PF00494.14   267 sp|P0AD57|ISPB_ECOLI -            323     0.073   12.3   0.1   1   1   1.8e-05      0.13   11.5   0.1   138   241   191   318   148   321 0.77 Squalene/phytoene synthase
IspD                 PF01128.14   221 sp|Q46893|ISPD_ECOLI -            236   7.1e-96  319.9   0.0   1   1   1.1e-99     8e-96  319.8   0.0     1   221     8   229     8   229 0.98 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
NTP_transf_3         PF12804.2    160 sp|Q46893|ISPD_ECOLI -            236   1.7e-17   63.9   1.9   1   1   3.4e-21   2.5e-17   63.4   1.9     1   142    10   178    10   196 0.76 MobA-like NTP transferase domain
GHMP_kinases_N       PF00288.21    67 sp|P62615|ISPE_ECOLI -            283   2.3e-10   40.3   0.1   1   1   6.5e-14   4.8e-10   39.3   0.1     1    66    91   148    91   149 0.87 GHMP kinases N terminal domain
GHMP_kinases_C       PF08544.8     85 sp|P62615|ISPE_ECOLI -            283   1.1e-06   28.6   0.0   1   1   3.2e-10   2.3e-06   27.6   0.0    28    81   214   263   191   266 0.83 GHMP kinases C terminal
YgbB                 PF02542.11   157 sp|P62617|ISPF_ECOLI -            159   1.8e-68  229.2   0.0   1   1   1.4e-72   2.1e-68  229.1   0.0     1   156     1   156     1   157 0.99 YgbB family
GcpE                 PF04551.9    359 sp|P62620|ISPG_ECOLI -            372  1.4e-128  428.6   0.2   1   1  1.1e-132  1.7e-128  428.4   0.2     2   357    13   354    12   356 0.98 GcpE protein
LYTB                 PF02401.13   281 sp|P62623|ISPH_ECOLI -            316  4.9e-120  399.6   0.2   1   1  7.5e-124  5.6e-120  399.5   0.2     1   280     3   284     3   285 0.99 LytB protein
Cas6                 PF09559.5    195 sp|P62623|ISPH_ECOLI -            316     0.066   12.9   0.0   1   1   1.6e-05      0.12   12.1   0.0    10   149   167   302   161   307 0.90 Cas6 Crispr
Ivy                  PF08816.6    118 sp|P0AD59|IVY_ECOLI  -            157   7.4e-35  119.4   0.1   1   1   6.1e-39   9.1e-35  119.2   0.1     1   118    37   152    37   152 0.98 Inhibitor of vertebrate lysozyme (Ivy)
Baseplate_J          PF04865.9    243 sp|P75981|JAYE_ECOLI -            263   8.6e-47  159.5   0.1   1   1   7.6e-51   1.1e-46  159.1   0.1    29   243     7   228     3   228 0.94 Baseplate J-like protein
PfkB                 PF00294.19   301 sp|P0AEW9|K1PF_ECOLI -            312   1.9e-62  211.1   0.0   1   1     3e-66   2.2e-62  210.8   0.0     7   296    14   293     8   299 0.92 pfkB family carbohydrate kinase
Phos_pyr_kin         PF08543.7    246 sp|P0AEW9|K1PF_ECOLI -            312    0.0011   18.2   0.0   1   1   2.3e-07    0.0017   17.6   0.0   112   231   173   285   164   297 0.79 Phosphomethylpyrimidine kinase
ADK                  PF00406.17   151 sp|P69441|KAD_ECOLI  -            214   1.4e-60  203.5   0.0   1   1   7.9e-64   1.7e-60  203.2   0.0     1   150     5   186     5   187 0.99 Adenylate kinase
ADK_lid              PF05191.9     36 sp|P69441|KAD_ECOLI  -            214     9e-17   60.4   0.0   1   1   7.5e-20   1.6e-16   59.6   0.0     1    36   123   158   123   158 1.00 Adenylate kinase, active site lid
AAA_17               PF13207.1    121 sp|P69441|KAD_ECOLI  -            214   3.7e-08   34.2   0.0   1   1   2.8e-11   5.9e-08   33.5   0.0     1   108     2   116     2   159 0.61 AAA domain
AAA_33               PF13671.1    143 sp|P69441|KAD_ECOLI  -            214   2.8e-05   24.0   0.0   1   1   4.8e-08    0.0001   22.2   0.0     2   122     3   127     3   140 0.72 AAA domain
AAA_18               PF13238.1    129 sp|P69441|KAD_ECOLI  -            214     0.019   15.2   0.0   1   1   1.7e-05     0.037   14.3   0.0     1    57     3    66     3   131 0.61 AAA domain
AAA_28               PF13521.1    163 sp|P69441|KAD_ECOLI  -            214      0.03   14.2   0.0   1   1   2.4e-05     0.052   13.5   0.0     1    79     2    84     2    91 0.79 AAA domain
Thymidylate_kin      PF02223.12   186 sp|P69441|KAD_ECOLI  -            214       0.1   11.9   0.3   1   2   0.00028      0.59    9.4   0.1     3    52     7    58     7    75 0.76 Thymidylate kinase
peroxidase           PF00141.18   230 sp|P13029|KATG_ECOLI -            726     3e-87  291.9   0.0   1   2   2.7e-53   3.9e-49  167.1   0.0     4   230    77   396    74   396 0.87 Peroxidase
peroxidase           PF00141.18   230 sp|P13029|KATG_ECOLI -            726     3e-87  291.9   0.0   2   2   1.2e-39   1.8e-35  122.4   0.0     3   230   403   700   401   700 0.89 Peroxidase
F_bP_aldolase        PF01116.15   287 sp|P0AB74|KBAY_ECOLI -            286  8.7e-103  343.3   0.0   1   1    2e-106  9.8e-103  343.1   0.0     4   286     5   283     2   284 0.99 Fructose-bisphosphate aldolase class-II
SLA_LP_auto_ag       PF05889.8    389 sp|P0AB74|KBAY_ECOLI -            286     0.031   12.7   0.1   2   2     5e-05      0.25    9.7   0.0   136   208   152   225   142   237 0.86 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)
HycI                 PF01750.13   130 sp|P0AB74|KBAY_ECOLI -            286     0.067   12.7   0.0   1   1   2.6e-05      0.13   11.8   0.0    45   116    46   114    44   121 0.80 Hydrogenase maturation protease
Tagatose_6_P_K       PF08013.6    424 sp|P0C8K0|KBAZ_ECOLI -            426    5e-209  694.0   0.0   1   1  3.8e-213  5.7e-209  693.8   0.0     1   423     1   424     1   425 1.00 Tagatose 6 phosphate kinase
Aminotran_1_2        PF00155.16   363 sp|P0AB77|KBL_ECOLI  -            398   8.7e-80  268.3   0.0   1   1   6.1e-83     1e-79  268.1   0.0     2   363    43   387    42   387 0.98 Aminotransferase class I and II
Aminotran_5          PF00266.14   371 sp|P0AB77|KBL_ECOLI  -            398   1.1e-05   24.3   0.0   1   2   5.3e-08   8.7e-05   21.4   0.0    43   181    87   216    75   219 0.79 Aminotransferase class-V
SHMT                 PF00464.14   399 sp|P0AB77|KBL_ECOLI  -            398   0.00083   17.8   0.0   1   1   1.5e-06    0.0025   16.2   0.0   162   251   165   263   113   353 0.75 Serine hydroxymethyltransferase
DegT_DnrJ_EryC1      PF01041.12   363 sp|P0AB77|KBL_ECOLI  -            398    0.0044   16.1   0.9   1   1   6.8e-06     0.011   14.7   0.4    24   152    86   216    76   232 0.82 DegT/DnrJ/EryC1/StrS aminotransferase family
HATPase_c_5          PF14501.1    100 sp|P0AB77|KBL_ECOLI  -            398      0.03   14.0   0.0   1   1   3.9e-05     0.064   12.9   0.0    38    91    41    97     8   101 0.75 GHKL domain
RraB                 PF06877.6    104 sp|P0AB77|KBL_ECOLI  -            398     0.088   13.4   0.0   1   1   0.00013      0.22   12.1   0.0    33    97   333   396   303   398 0.86 Regulator of ribonuclease activity B
OKR_DC_1             PF01276.15   417 sp|P0AB77|KBL_ECOLI  -            398      0.11   10.9   0.0   1   1   0.00013      0.21   10.1   0.0   154   207   159   214   114   220 0.81 Orn/Lys/Arg decarboxylase, major domain
Cys_Met_Meta_PP      PF01053.15   386 sp|P0AB77|KBL_ECOLI  -            398      0.13   10.5   0.0   1   1   0.00013      0.21    9.8   0.0    57   183    89   216    83   221 0.80 Cys/Met metabolism PLP-dependent enzyme
TrkA_N               PF02254.13   116 sp|P31069|KCH_ECOLI  -            417   8.4e-21   74.1   0.2   1   1   3.4e-24   1.3e-20   73.5   0.2     1   116   246   365   246   365 0.93 TrkA-N domain
Ion_trans_2          PF07885.11    79 sp|P31069|KCH_ECOLI  -            417     7e-15   54.5   7.6   2   2   1.9e-18     7e-15   54.5   7.6     2    74   149   221   148   226 0.89 Ion channel
IRK                  PF01007.15   337 sp|P31069|KCH_ECOLI  -            417   0.00087   18.1   1.0   1   1   4.3e-07    0.0016   17.3   1.0    81   122   168   210    99   231 0.80 Inward rectifier potassium channel
NAD_binding_7        PF13241.1    103 sp|P31069|KCH_ECOLI  -            417     0.075   13.2   0.1   1   1   3.6e-05      0.14   12.4   0.1     7    83   243   334   238   356 0.63 Putative NAD(P)-binding
Cytidylate_kin       PF02224.13   158 sp|P0A6I0|KCY_ECOLI  -            227   5.4e-62  207.8   0.4   1   1   8.3e-65   6.5e-62  207.6   0.4     3   158    63   218    61   218 0.97 Cytidylate kinase
AAA_17               PF13207.1    121 sp|P0A6I0|KCY_ECOLI  -            227     2e-13   51.2   0.0   1   1   1.2e-15   9.5e-13   49.0   0.0     1   120     7   134     7   135 0.85 AAA domain
Cytidylate_kin2      PF13189.1    179 sp|P0A6I0|KCY_ECOLI  -            227   1.7e-07   31.2   0.0   1   1   5.4e-10   4.2e-07   30.0   0.0     1   155     7   187     7   191 0.77 Cytidylate kinase-like family
AAA_18               PF13238.1    129 sp|P0A6I0|KCY_ECOLI  -            227   2.1e-05   24.8   0.1   1   1   1.3e-07   0.00011   22.5   0.1     1   111     8   160     8   189 0.76 AAA domain
AAA_30               PF13604.1    196 sp|P0A6I0|KCY_ECOLI  -            227   0.00047   19.8   0.5   1   2   2.5e-06    0.0019   17.7   0.0    19    66     6    59     1    99 0.89 AAA domain
ABC_tran             PF00005.22   137 sp|P0A6I0|KCY_ECOLI  -            227   0.00071   19.8   0.0   1   1   1.5e-06    0.0012   19.1   0.0    14    43     8    69     5   208 0.67 ABC transporter
AAA_33               PF13671.1    143 sp|P0A6I0|KCY_ECOLI  -            227   0.00083   19.2   0.2   1   1   4.1e-06    0.0032   17.3   0.2     3    37     9    43     7   201 0.67 AAA domain
SKI                  PF01202.17   158 sp|P0A6I0|KCY_ECOLI  -            227    0.0035   17.2   0.3   1   2   0.00022      0.17   11.7   0.0     1    23    14    36    14    41 0.93 Shikimate kinase
ADK                  PF00406.17   151 sp|P0A6I0|KCY_ECOLI  -            227     0.007   16.2   0.0   1   1   1.8e-05     0.014   15.2   0.0     3    32    12    41    10    51 0.92 Adenylate kinase
AAA_19               PF13245.1     76 sp|P0A6I0|KCY_ECOLI  -            227    0.0089   15.7   0.8   1   1   2.8e-05     0.022   14.5   0.1    10    59     5    56     1    79 0.67 Part of AAA domain
UPF0079              PF02367.12   123 sp|P0A6I0|KCY_ECOLI  -            227     0.016   14.8   0.0   1   1   3.5e-05     0.028   14.0   0.0    15    40     5    30     1    54 0.91 Uncharacterised P-loop hydrolase UPF0079
AAA_22               PF13401.1    131 sp|P0A6I0|KCY_ECOLI  -            227     0.043   13.9   0.0   1   1   0.00011     0.083   13.0   0.0     6    31     7    32     5   126 0.84 AAA domain
ATP_bind_2           PF03668.10   284 sp|P0A6I0|KCY_ECOLI  -            227     0.049   12.7   0.4   1   2   0.00044      0.34    9.9   0.0     3    69     7    78     5   130 0.76 P-loop ATPase protein family
AAA_29               PF13555.1     62 sp|P0A6I0|KCY_ECOLI  -            227      0.07   12.6   0.0   1   1    0.0002      0.16   11.5   0.0    26    47     8    29     2    35 0.86 P-loop containing region of AAA domain
AAA                  PF00004.24   132 sp|P0A6I0|KCY_ECOLI  -            227      0.09   12.9   0.0   1   1   0.00031      0.25   11.5   0.0     5    27    12    34     8    80 0.86 ATPase family associated with various cellular activities (AAA)
RNA_helicase         PF00910.17   107 sp|P0A6I0|KCY_ECOLI  -            227      0.12   12.5   0.0   1   1   0.00031      0.24   11.5   0.0     1    26     8    33     8    52 0.83 RNA helicase
PRK                  PF00485.13   194 sp|P0A6I0|KCY_ECOLI  -            227      0.12   11.8   0.0   1   2   0.00066      0.52    9.8   0.0     1    29     7    35     7    75 0.80 Phosphoribulokinase / Uridine kinase family
MobB                 PF03205.9    140 sp|P0A6I0|KCY_ECOLI  -            227      0.13   11.9   0.0   1   1   0.00051       0.4   10.3   0.0     1    39     6    50     6    61 0.67 Molybdopterin guanine dinucleotide synthesis protein B
PfkB                 PF00294.19   301 sp|P37647|KDGK_ECOLI -            309   1.3e-70  237.9   0.0   1   1     2e-74   1.5e-70  237.7   0.0     2   297     3   303     2   307 0.97 pfkB family carbohydrate kinase
RAMP                 PF04901.8    115 sp|P37647|KDGK_ECOLI -            309      0.11   12.2   0.0   2   2   3.8e-05      0.28   10.9   0.0    20    66   171   220   161   232 0.84 Receptor activity modifying family
DAGK_prokar          PF01219.14   104 sp|P0ABN1|KDGL_ECOLI -            122   5.5e-39  131.9   8.0   1   1   1.3e-42   6.3e-39  131.7   8.0     2   104    16   118    15   118 0.99 Prokaryotic diacylglycerol kinase
YbgT_YccB            PF08173.6     28 sp|P0ABN1|KDGL_ECOLI -            122       1.9    8.4   7.9   1   2   0.00013      0.67    9.8   0.5    11    25    36    50    36    52 0.92 Membrane bound YbgT-like protein
KdgT                 PF03812.8    314 sp|P0A712|KDGT_ECOLI -            327    1e-180  599.8  30.6   1   1  7.7e-185  1.1e-180  599.6  30.6     1   314     1   314     1   314 1.00 2-keto-3-deoxygluconate permease
KdpD                 PF02702.12   211 sp|P21865|KDPD_ECOLI -            894   4.5e-99  329.8   0.0   1   1  3.2e-102   6.8e-99  329.2   0.0     2   211    21   230    20   230 0.99 Osmosensitive K+ channel His kinase sensor domain
HATPase_c            PF02518.21   111 sp|P21865|KDPD_ECOLI -            894   1.4e-24   85.9   0.0   1   1   1.6e-27   3.3e-24   84.7   0.0     6   110   778   881   774   882 0.97 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DUF4118              PF13493.1    105 sp|P21865|KDPD_ECOLI -            894     7e-15   55.1  14.3   1   1   5.6e-18   1.2e-14   54.3  14.3     5   103   407   499   402   501 0.84 Domain of unknown function (DUF4118)
HisKA                PF00512.20    68 sp|P21865|KDPD_ECOLI -            894   2.8e-11   43.2   1.8   1   1   1.3e-14   2.8e-11   43.2   1.8     3    68   665   730   663   730 0.88 His Kinase A (phospho-acceptor) domain
GAF_3                PF13492.1    129 sp|P21865|KDPD_ECOLI -            894   3.2e-10   40.1   0.0   1   1   4.4e-13   9.4e-10   38.6   0.0     2   129   528   644   527   644 0.86 GAF domain
Usp                  PF00582.21   140 sp|P21865|KDPD_ECOLI -            894   3.7e-05   23.9   0.6   1   1   7.7e-08   0.00016   21.8   0.6     3   133   251   365   249   373 0.85 Universal stress protein family
HATPase_c_2          PF13581.1    125 sp|P21865|KDPD_ECOLI -            894    0.0014   18.4   0.3   1   1   2.3e-06    0.0048   16.6   0.0    40   111   786   859   784   879 0.78 Histidine kinase-like ATPase domain
DAHP_synth_1         PF00793.15   272 sp|P0A715|KDSA_ECOLI -            284   6.3e-82  274.3   0.0   1   1     5e-86   7.4e-82  274.0   0.0     9   271    10   275     2   276 0.97 DAHP synthetase I family
CTP_transf_3         PF02348.14   217 sp|P04951|KDSB_ECOLI -            248   9.5e-70  234.5   0.0   1   1     3e-73   1.1e-69  234.3   0.0     1   217     4   221     4   221 0.98 Cytidylyltransferase
NTP_transf_3         PF12804.2    160 sp|P04951|KDSB_ECOLI -            248   1.1e-13   51.5   0.0   1   1   3.8e-17   1.4e-13   51.2   0.0    16   128    19   150    10   218 0.82 MobA-like NTP transferase domain
DUF2064              PF09837.4    122 sp|P04951|KDSB_ECOLI -            248    0.0032   17.0   0.5   1   1   1.5e-06    0.0055   16.3   0.5     4    90    36   121    32   128 0.78 Uncharacterized protein conserved in bacteria (DUF2064)
NTP_transferase      PF00483.18   248 sp|P04951|KDSB_ECOLI -            248    0.0099   15.1   0.0   1   1   3.7e-06     0.014   14.7   0.0    18    67    15    60    11   137 0.56 Nucleotidyl transferase
Hydrolase_3          PF08282.7    254 sp|P0ABZ4|KDSC_ECOLI -            188   1.1e-12   48.0   0.0   2   2   1.3e-14   6.4e-11   42.3   0.0   179   243    94   158    88   167 0.94 haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P0ABZ4|KDSC_ECOLI -            188   4.4e-05   24.0   0.2   2   2   4.3e-08   0.00021   21.7   0.0   143   214    69   136    50   137 0.87 haloacid dehalogenase-like hydrolase
S6PP                 PF05116.8    247 sp|P0ABZ4|KDSC_ECOLI -            188     0.011   15.0   0.0   2   2   2.5e-05      0.13   11.5   0.0   164   214   100   150    97   158 0.91 Sucrose-6F-phosphate phosphohydrolase
SIS                  PF01380.17   131 sp|P45395|KDSD_ECOLI -            328   4.9e-34  116.7   0.1   1   2   2.3e-37   1.1e-33  115.5   0.0     2   131    46   177    45   177 0.97 SIS domain
CBS                  PF00571.23    57 sp|P45395|KDSD_ECOLI -            328   1.8e-15   56.4   3.4   2   3   3.6e-10   1.8e-06   27.6   0.3     1    54   206   261   206   263 0.97 CBS domain
CBS                  PF00571.23    57 sp|P45395|KDSD_ECOLI -            328   1.8e-15   56.4   3.4   3   3   3.3e-10   1.6e-06   27.7   0.5     2    54   274   325   273   327 0.96 CBS domain
SIS_2                PF13580.1    138 sp|P45395|KDSD_ECOLI -            328    0.0023   17.6   1.5   2   2     5e-06     0.025   14.3   0.1   101   138    94   131    86   131 0.94 SIS domain
Glycos_transf_N      PF04413.11   186 sp|P0AC75|KDTA_ECOLI -            425   4.8e-75  250.8   0.0   1   2   1.5e-77   4.5e-74  247.6   0.0     1   185    31   212    31   213 0.98 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
Glycos_transf_1      PF00534.15   172 sp|P0AC75|KDTA_ECOLI -            425   3.9e-10   39.4   0.0   1   1   2.5e-13   7.4e-10   38.5   0.0    65   169   291   398   231   401 0.75 Glycosyl transferases group 1
Glyco_trans_4_4      PF13579.1    160 sp|P0AC75|KDTA_ECOLI -            425     0.016   15.3   0.8   1   1   5.4e-06     0.016   15.3   0.8    60   157    98   204    19   206 0.65 Glycosyl transferase 4-like domain
DEDD_Tnp_IS110       PF01548.12   144 sp|P0AC75|KDTA_ECOLI -            425      0.14   11.8   0.0   1   1    0.0001      0.31   10.7   0.0    34    90   113   165    95   168 0.79 Transposase
adh_short            PF00106.20   167 sp|P37769|KDUD_ECOLI -            253   6.1e-28   97.8   0.2   1   1   1.7e-31   8.5e-28   97.3   0.2     1   166    11   176    11   177 0.93 short chain dehydrogenase
adh_short_C2         PF13561.1    241 sp|P37769|KDUD_ECOLI -            253   5.2e-20   72.2   0.0   1   1   1.4e-23   7.1e-20   71.8   0.0     5   239    19   249    17   250 0.90 Enoyl-(Acyl carrier protein) reductase
KR                   PF08659.5    181 sp|P37769|KDUD_ECOLI -            253   3.6e-06   26.7   0.1   1   1   1.2e-09   5.9e-06   26.0   0.1     3   125    13   129    12   192 0.84 KR domain
KduI                 PF04962.7    262 sp|Q46938|KDUI_ECOLI -            278   3.5e-42  144.2   0.2   1   1   5.7e-46   4.2e-42  144.0   0.2     8   261    31   273    24   274 0.89 KduI/IolB family
Na_H_Exchanger       PF00999.16   380 sp|P45522|KEFB_ECOLI -            601   4.2e-72  242.7  48.6   1   1   1.9e-75   5.5e-72  242.3  48.6     3   379    11   373     9   376 0.95 Sodium/hydrogen exchanger family
TrkA_N               PF02254.13   116 sp|P45522|KEFB_ECOLI -            601   1.5e-24   86.2   0.1   1   1   9.6e-28   2.9e-24   85.3   0.1     1   112   403   514   403   517 0.98 TrkA-N domain
2-Hacid_dh_C         PF02826.14   178 sp|P45522|KEFB_ECOLI -            601    0.0097   15.0   0.1   1   2   6.1e-05      0.18   10.9   0.0    36    79   400   443   367   484 0.74 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Saccharop_dh         PF03435.13   386 sp|P45522|KEFB_ECOLI -            601      0.16   10.8   0.0   1   1     8e-05      0.24   10.3   0.0     1    90   403   488   403   492 0.83 Saccharopine dehydrogenase
Na_H_Exchanger       PF00999.16   380 sp|P03819|KEFC_ECOLI -            620   4.7e-66  222.8  47.1   1   1   3.8e-69   6.2e-66  222.4  47.1     2   374    11   375    10   380 0.95 Sodium/hydrogen exchanger family
TrkA_N               PF02254.13   116 sp|P03819|KEFC_ECOLI -            620     9e-27   93.3   0.0   1   1   1.5e-29   2.4e-26   92.0   0.0     1   111   402   512   402   514 0.97 TrkA-N domain
NAD_binding_7        PF13241.1    103 sp|P03819|KEFC_ECOLI -            620    0.0019   18.4   0.0   1   1   2.7e-06    0.0045   17.2   0.0     6    83   398   486   395   504 0.80 Putative NAD(P)-binding
NAD_binding_10       PF13460.1    183 sp|P03819|KEFC_ECOLI -            620    0.0048   16.9   0.0   1   1   5.5e-06     0.009   16.0   0.0     2   110   402   520   402   543 0.83 NADH(P)-binding
ApbA                 PF02558.11   151 sp|P03819|KEFC_ECOLI -            620     0.011   15.2   0.0   1   1   1.5e-05     0.024   14.0   0.0     1    80   402   476   402   495 0.73 Ketopantoate reductase PanE/ApbA
FAD_binding_3        PF01494.14   356 sp|P03819|KEFC_ECOLI -            620     0.034   13.2   0.0   1   1   3.1e-05     0.051   12.6   0.0     3    60   401   463   399   523 0.82 FAD binding domain
2-Hacid_dh_C         PF02826.14   178 sp|P03819|KEFC_ECOLI -            620     0.043   12.9   0.0   1   1   6.1e-05       0.1   11.7   0.0    31    81   394   444   365   461 0.81 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
UDPG_MGDP_dh_N       PF03721.9    185 sp|P03819|KEFC_ECOLI -            620     0.062   12.6   0.0   1   1   6.3e-05       0.1   11.9   0.0     2    41   401   440   400   465 0.90 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
ThiF                 PF00899.16   136 sp|P03819|KEFC_ECOLI -            620       3.7    7.3   5.6   1   1   0.00048      0.79    9.5   0.4     3    38   400   436   398   500 0.86 ThiF family
Flavodoxin_2         PF02525.12   199 sp|P0A754|KEFF_ECOLI -            176   2.7e-41  141.2   0.0   1   1   4.4e-45   3.3e-41  140.9   0.0     3   199     2   167     1   167 0.90 Flavodoxin-like fold
FMN_red              PF03358.10   152 sp|P0A754|KEFF_ECOLI -            176   4.9e-08   32.6   0.0   1   1   9.1e-12   6.8e-08   32.1   0.0    58   126    43   118     2   135 0.77 NADPH-dependent FMN reductase
Flavodoxin_2         PF02525.12   199 sp|P0A756|KEFG_ECOLI -            184   2.1e-39  135.1   0.0   1   1   3.2e-43   2.4e-39  134.9   0.0     2   197     7   173     6   175 0.91 Flavodoxin-like fold
FMN_red              PF03358.10   152 sp|P0A756|KEFG_ECOLI -            184   0.00015   21.3   0.0   1   1   3.6e-08   0.00027   20.4   0.0    60   112    51   109     6   124 0.69 NADPH-dependent FMN reductase
Sugar_tr             PF00083.19   451 sp|P0AEX3|KGTP_ECOLI -            432   2.5e-39  135.1  36.6   1   2   1.8e-31   5.5e-28   97.7   9.0     2   194    23   221    22   223 0.90 Sugar (and other) transporter
Sugar_tr             PF00083.19   451 sp|P0AEX3|KGTP_ECOLI -            432   2.5e-39  135.1  36.6   2   2   7.2e-16   2.1e-12   46.3  18.0   225   433   223   421   214   431 0.70 Sugar (and other) transporter
MFS_1                PF07690.11   352 sp|P0AEX3|KGTP_ECOLI -            432   6.3e-29  100.7  63.8   1   2   9.3e-29   2.8e-25   88.8  35.4    30   345    61   383    28   389 0.79 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P0AEX3|KGTP_ECOLI -            432   6.3e-29  100.7  63.8   2   2   1.2e-09   3.7e-06   25.9  20.4    37   170   284   421   279   429 0.72 Major Facilitator Superfamily
MFS_2                PF13347.1    428 sp|P0AEX3|KGTP_ECOLI -            432   2.1e-07   29.7  22.4   1   2   7.1e-11   2.1e-07   29.7  22.4    54   335    76   356    40   367 0.74 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P0AEX3|KGTP_ECOLI -            432   2.1e-07   29.7  22.4   2   2   8.8e-06     0.026   12.9  20.3    10   119   253   355   249   428 0.69 MFS/sugar transport protein
MFS_1_like           PF12832.2     77 sp|P0AEX3|KGTP_ECOLI -            432   0.00064   19.4   3.5   2   2   2.2e-06    0.0064   16.2   0.4    22    76   265   320   259   321 0.92 MFS_1 like family
Guanylate_kin        PF00625.16   183 sp|P60546|KGUA_ECOLI -            207   2.5e-71  238.9   0.0   1   1   2.3e-74   2.9e-71  238.7   0.0     2   183     4   186     3   186 0.98 Guanylate kinase
AAA_33               PF13671.1    143 sp|P60546|KGUA_ECOLI -            207   6.3e-06   26.1   0.0   1   1   1.6e-08     2e-05   24.4   0.0     3   135     8   152     6   162 0.72 AAA domain
AAA_16               PF13191.1    185 sp|P60546|KGUA_ECOLI -            207   0.00024   21.1   0.1   1   1   5.3e-07   0.00065   19.7   0.1    24   165     4   178     2   201 0.61 AAA ATPase domain
AAA_22               PF13401.1    131 sp|P60546|KGUA_ECOLI -            207   0.00082   19.5   0.3   1   1   8.6e-06     0.011   15.9   0.3     4    34     4    34     1   197 0.81 AAA domain
DUF258               PF03193.11   161 sp|P60546|KGUA_ECOLI -            207    0.0016   17.6   0.0   1   1   2.4e-06     0.003   16.7   0.0    36    79     5    43     1    55 0.83 Protein of unknown function, DUF258
ABC_tran             PF00005.22   137 sp|P60546|KGUA_ECOLI -            207    0.0039   17.4   0.0   1   1   3.5e-06    0.0044   17.3   0.0    10    80     3    84     1   196 0.76 ABC transporter
MMR_HSR1             PF01926.18   116 sp|P60546|KGUA_ECOLI -            207     0.022   14.6   0.0   1   1   5.5e-05     0.068   13.1   0.0     9    45    14    50     9    70 0.71 50S ribosome-binding GTPase
Miro                 PF08477.8    119 sp|P60546|KGUA_ECOLI -            207     0.024   15.1   0.0   1   1   3.5e-05     0.043   14.3   0.0     8    76    13    77     8    97 0.69 Miro-like protein
AAA_18               PF13238.1    129 sp|P60546|KGUA_ECOLI -            207     0.029   14.6   0.0   1   1    0.0002      0.25   11.6   0.0     3   118     9   144     8   155 0.54 AAA domain
AAA_25               PF13481.1    194 sp|P60546|KGUA_ECOLI -            207     0.029   13.7   0.2   1   2   0.00016      0.19   11.0   0.0    31    54     2    25     1    49 0.90 AAA domain
Viral_helicase1      PF01443.13   234 sp|P60546|KGUA_ECOLI -            207      0.11   12.0   0.0   1   1   0.00012      0.15   11.5   0.0     2    27     8    35     7    63 0.74 Viral (Superfamily 1) RNA helicase
AAA_29               PF13555.1     62 sp|P60546|KGUA_ECOLI -            207      0.13   11.8   0.1   1   1   0.00019      0.24   10.9   0.1    25    43     6    24     1    27 0.81 P-loop containing region of AAA domain
GHMP_kinases_N       PF00288.21    67 sp|P00547|KHSE_ECOLI -            310   1.7e-17   63.2   0.3   1   1   5.2e-21   3.9e-17   62.0   0.3     2    67    84   150    83   150 0.95 GHMP kinases N terminal domain
GHMP_kinases_C       PF08544.8     85 sp|P00547|KHSE_ECOLI -            310   2.3e-11   43.7   2.0   1   1   3.3e-15   2.4e-11   43.6   0.0     2    83   211   287   210   289 0.92 GHMP kinases C terminal
TK                   PF00265.13   176 sp|P23331|KITH_ECOLI -            205   2.8e-64  215.9   0.0   1   1   4.3e-68   3.2e-64  215.7   0.0     1   176     2   186     2   186 0.99 Thymidine kinase
AAA_22               PF13401.1    131 sp|P23331|KITH_ECOLI -            205   0.00043   20.4   0.0   1   1   9.8e-08   0.00072   19.6   0.0    15   123    13   115     4   122 0.78 AAA domain
PRK                  PF00485.13   194 sp|P0AEX5|KPPR_ECOLI -            289   3.3e-74  248.6   0.0   1   1   5.3e-78   3.9e-74  248.4   0.0     1   194     7   214     7   214 0.99 Phosphoribulokinase / Uridine kinase family
AAA_19               PF13245.1     76 sp|P0AEX5|KPPR_ECOLI -            289     0.091   12.5   0.1   1   1   2.4e-05      0.17   11.6   0.1     7    29     3    24     1    36 0.90 Part of AAA domain
Pribosyltran_N       PF13793.1    116 sp|P0A717|KPRS_ECOLI -            315   3.3e-49  165.4   0.2   1   2   1.5e-50   4.3e-47  158.6   0.0     1   116     4   121     4   121 0.98 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyl_synth       PF14572.1    184 sp|P0A717|KPRS_ECOLI -            315     5e-31  107.8   0.4   1   1     3e-34   8.8e-31  107.0   0.4    74   183   204   313   163   314 0.95 Phosphoribosyl synthetase-associated domain
Pribosyltran         PF00156.22   125 sp|P0A717|KPRS_ECOLI -            315   3.6e-16   59.0   0.3   1   1   3.4e-19     1e-15   57.5   0.3    23   119   158   244   149   250 0.88 Phosphoribosyl transferase domain
UPRTase              PF14681.1    207 sp|P0A717|KPRS_ECOLI -            315   0.00077   18.7   0.0   1   1   4.1e-07    0.0012   18.0   0.0   109   150   201   242   172   275 0.72 Uracil phosphoribosyltransferase
PRTase_2             PF15609.1    191 sp|P0A717|KPRS_ECOLI -            315      0.05   12.9   0.0   1   1   2.8e-05     0.084   12.1   0.0   123   150   215   242   199   269 0.82 Phosphoribosyl transferase
PTS_2-RNA            PF01885.11   186 sp|P39380|KPTA_ECOLI -            184   1.7e-52  177.4   0.0   1   1   4.1e-56     2e-52  177.1   0.0     2   180     6   175     5   180 0.96 RNA 2'-phosphotransferase, Tpt1 / KptA family
PARP                 PF00644.15   206 sp|P39380|KPTA_ECOLI -            184     0.032   13.6   0.0   1   1   8.6e-06     0.042   13.2   0.0    42    83    82   122    45   129 0.75 Poly(ADP-ribose) polymerase catalytic domain
YihI                 PF04220.7    169 sp|P39380|KPTA_ECOLI -            184      0.13   11.6   0.0   1   1   3.9e-05      0.19   11.0   0.0    34    91   116   169   108   183 0.80 Der GTPase activator (YihI)
PK                   PF00224.16   348 sp|P0AD61|KPYK1_ECOLI -            470  2.8e-150  499.7   9.5   1   1  6.9e-154  3.4e-150  499.4   9.5     1   345     1   342     1   345 0.98 Pyruvate kinase, barrel domain
PK_C                 PF02887.11   117 sp|P0AD61|KPYK1_ECOLI -            470   4.2e-28   97.2   2.2   2   2   1.5e-31   7.2e-28   96.4   0.8     1   116   355   468   355   469 0.97 Pyruvate kinase, alpha/beta domain
HpcH_HpaI            PF03328.9    221 sp|P0AD61|KPYK1_ECOLI -            470   0.00032   19.6   0.5   1   1   1.5e-07   0.00076   18.4   0.4    81   171   182   269   171   309 0.68 HpcH/HpaI aldolase/citrate lyase family
PK                   PF00224.16   348 sp|P21599|KPYK2_ECOLI -            480  7.1e-144  478.6   4.6   1   1  1.3e-147  9.8e-144  478.2   4.6     2   345     6   347     5   350 0.98 Pyruvate kinase, barrel domain
PK_C                 PF02887.11   117 sp|P21599|KPYK2_ECOLI -            480   4.2e-31  106.9   1.5   2   2   5.7e-35   4.2e-31  106.9   1.5     2   116   363   477   362   478 0.98 Pyruvate kinase, alpha/beta domain
Thymidylate_kin      PF02223.12   186 sp|P0A720|KTHY_ECOLI -            213   1.2e-60  204.0   0.0   1   1   8.3e-64   1.4e-60  203.9   0.0     1   186     8   200     8   200 0.98 Thymidylate kinase
AAA_28               PF13521.1    163 sp|P0A720|KTHY_ECOLI -            213     4e-06   26.8   0.1   1   1   3.2e-09   5.3e-06   26.4   0.1     2   142     6   168     5   184 0.71 AAA domain
AAA_33               PF13671.1    143 sp|P0A720|KTHY_ECOLI -            213    0.0024   17.7   0.1   1   1   4.7e-06    0.0078   16.0   0.1     2   140     6   174     5   177 0.67 AAA domain
AAA_18               PF13238.1    129 sp|P0A720|KTHY_ECOLI -            213    0.0091   16.3   1.0   1   1     3e-05      0.05   13.9   1.0     1   126     6   162     6   174 0.69 AAA domain
AAA_17               PF13207.1    121 sp|P0A720|KTHY_ECOLI -            213     0.022   15.5   0.2   1   1     4e-05     0.066   14.0   0.3     2    78     6   107     5   201 0.66 AAA domain
AAA_30               PF13604.1    196 sp|P0A720|KTHY_ECOLI -            213     0.027   14.0   0.0   1   1   3.1e-05     0.051   13.1   0.0    19    48     4    33     1    58 0.84 AAA domain
dNK                  PF01712.14   146 sp|P0A720|KTHY_ECOLI -            213     0.065   13.1   0.0   1   1   5.5e-05      0.09   12.6   0.0    65   126   130   189   114   208 0.61 Deoxynucleoside kinase
AAA_19               PF13245.1     76 sp|P0A720|KTHY_ECOLI -            213     0.075   12.7   0.0   1   1     9e-05      0.15   11.8   0.0    11    37     4    29     1    59 0.82 Part of AAA domain
AAA_22               PF13401.1    131 sp|P0A720|KTHY_ECOLI -            213      0.12   12.4   0.0   1   1   0.00011      0.18   11.9   0.0     5    53     4    48     1   139 0.72 AAA domain
K_trans              PF02705.11   534 sp|P63183|KUP_ECOLI  -            622  9.6e-207  687.5  25.4   1   1  7.5e-211  1.1e-206  687.3  25.4     2   534    14   544    13   544 0.99 K+ potassium transporter
LacY_symp            PF01306.14   413 sp|P02920|LACY_ECOLI -            417    1e-205  683.0  41.9   1   1  2.4e-209  1.2e-205  682.8  41.9     2   412     2   412     1   413 0.99 LacY proton/sugar symporter
MFS_1                PF07690.11   352 sp|P02920|LACY_ECOLI -            417   6.7e-23   80.9  55.9   1   2     5e-25   2.5e-21   75.8  42.8     3   311    14   333    12   353 0.77 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P02920|LACY_ECOLI -            417   6.7e-23   80.9  55.9   2   2   2.7e-05      0.13   10.9   5.6   129   172   357   400   347   415 0.82 Major Facilitator Superfamily
MFS_1_like           PF12832.2     77 sp|P02920|LACY_ECOLI -            417   1.6e-06   27.8   9.5   1   2   3.1e-10   1.6e-06   27.8   9.5     2    74     9    82     8    85 0.93 MFS_1 like family
OmpA                 PF00691.15    97 sp|Q47154|LAFU_ECOLI -            211   3.2e-15   56.2   0.1   2   2     2e-18   1.4e-14   54.2   0.0     1    94    70   164    70   167 0.83 OmpA family
SulA                 PF03846.9    119 sp|Q47154|LAFU_ECOLI -            211     0.012   15.2   0.3   1   2   3.6e-06     0.027   14.1   0.0    67   102   122   158   113   174 0.78 Cell division inhibitor SulA
LamB                 PF02264.10   398 sp|P02943|LAMB_ECOLI -            446  1.4e-168  561.0  26.2   1   1  1.1e-172  1.6e-168  560.9  26.2     1   398    28   446    28   446 0.97 LamB porin
DUF1049              PF06305.6     68 sp|P0ACV4|LAPA_ECOLI -            102   1.4e-25   88.5   0.7   2   2   4.8e-29   1.4e-25   88.5   0.7     1    66    22    87    22    89 0.97 Protein of unknown function (DUF1049)
Yip1                 PF04893.12   172 sp|P0ACV4|LAPA_ECOLI -            102     0.034   13.6   5.8   1   1   1.3e-05     0.039   13.4   5.8    22    83     3    63     1    74 0.65 Yip1 domain
ABC_membrane         PF00664.18   275 sp|P0ACV4|LAPA_ECOLI -            102     0.089   12.1   3.7   1   1   4.6e-05      0.14   11.5   3.7    16    78     5    80     2    85 0.76 ABC transporter transmembrane region
HAMP                 PF00672.20    70 sp|P0ACV4|LAPA_ECOLI -            102         6    7.1   7.5   2   2   0.00022      0.64   10.2   0.3     2    47    50    95    42   102 0.80 HAMP domain
HemY_N               PF07219.8    108 sp|P0ACV4|LAPA_ECOLI -            102        10    5.7   9.2   2   2   9.7e-05      0.29   10.7   0.6    21    65    43    87    31    93 0.88 HemY protein N-terminus
TPR_14               PF13428.1     44 sp|P0AB58|LAPB_ECOLI -            389   1.2e-16   59.6  18.2   3   7   0.00023      0.15   12.8   0.2     3    27   109   133   107   142 0.87 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|P0AB58|LAPB_ECOLI -            389   1.2e-16   59.6  18.2   4   7    0.0015      0.98   10.2   0.1     3    33   143   173   141   186 0.82 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|P0AB58|LAPB_ECOLI -            389   1.2e-16   59.6  18.2   5   7     2e-05     0.013   16.1   0.1     6    43   185   222   180   223 0.92 Tetratricopeptide repeat
TPR_14               PF13428.1     44 sp|P0AB58|LAPB_ECOLI -            389   1.2e-16   59.6  18.2   6   7   8.4e-05     0.054   14.1   0.0     6    33   219   246   218   258 0.88 Tetratricopeptide repeat
TPR_11               PF13414.1     69 sp|P0AB58|LAPB_ECOLI -            389   8.6e-15   54.1   4.1   1   4   1.2e-05    0.0077   15.8   0.0     9    62    41    93    38    99 0.90 TPR repeat
TPR_11               PF13414.1     69 sp|P0AB58|LAPB_ECOLI -            389   8.6e-15   54.1   4.1   3   4   1.5e-08   9.4e-06   25.1   0.1     2    68   179   244   178   245 0.95 TPR repeat
TPR_11               PF13414.1     69 sp|P0AB58|LAPB_ECOLI -            389   8.6e-15   54.1   4.1   4   4     3e-06    0.0019   17.7   0.0     9    66   220   277   218   280 0.90 TPR repeat
TPR_12               PF13424.1     78 sp|P0AB58|LAPB_ECOLI -            389   3.8e-14   52.3  15.2   1   5   8.7e-05     0.056   13.3   0.0    29    71    52    94    48   100 0.89 Tetratricopeptide repeat
TPR_12               PF13424.1     78 sp|P0AB58|LAPB_ECOLI -            389   3.8e-14   52.3  15.2   2   5   7.1e-08   4.6e-05   23.2   0.3     6    71    70   132    65   135 0.89 Tetratricopeptide repeat
TPR_12               PF13424.1     78 sp|P0AB58|LAPB_ECOLI -            389   3.8e-14   52.3  15.2   3   5   7.9e-06    0.0051   16.7   1.5    15    75   110   170   101   173 0.84 Tetratricopeptide repeat
TPR_12               PF13424.1     78 sp|P0AB58|LAPB_ECOLI -            389   3.8e-14   52.3  15.2   4   5   2.2e-08   1.4e-05   24.9   0.2    11    77   179   245   176   246 0.73 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P0AB58|LAPB_ECOLI -            389     5e-14   52.3  10.6   1   4   8.6e-05     0.055   13.8   0.0     4    66    48   109    45   110 0.91 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P0AB58|LAPB_ECOLI -            389     5e-14   52.3  10.6   2   4   0.00081      0.52   10.6   1.1     1    60   117   176   117   180 0.91 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P0AB58|LAPB_ECOLI -            389     5e-14   52.3  10.6   3   4   6.9e-10   4.4e-07   30.1   0.1     2    57   191   246   190   256 0.94 Tetratricopeptide repeat
TPR_7                PF13176.1     36 sp|P0AB58|LAPB_ECOLI -            389   1.1e-13   49.8  11.5   1   6   4.2e-05     0.027   14.2   0.0     1    27    71    97    71   106 0.82 Tetratricopeptide repeat
TPR_7                PF13176.1     36 sp|P0AB58|LAPB_ECOLI -            389   1.1e-13   49.8  11.5   3   6   0.00021      0.13   12.0   0.1     1    32   143   174   143   178 0.85 Tetratricopeptide repeat
TPR_7                PF13176.1     36 sp|P0AB58|LAPB_ECOLI -            389   1.1e-13   49.8  11.5   5   6   0.00047       0.3   10.9   0.0     5    31   220   244   218   249 0.88 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P0AB58|LAPB_ECOLI -            389   1.4e-13   51.0   6.3   1   4   3.1e-05      0.02   15.5   0.0     4    52    42    90    39   107 0.90 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P0AB58|LAPB_ECOLI -            389   1.4e-13   51.0   6.3   2   4   3.1e-06     0.002   18.7   0.4     2    60   112   170   112   175 0.94 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P0AB58|LAPB_ECOLI -            389   1.4e-13   51.0   6.3   3   4   4.5e-05     0.029   15.0   0.1     2    58   185   241   184   247 0.92 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P0AB58|LAPB_ECOLI -            389   1.4e-13   51.0   6.3   4   4   3.2e-05     0.021   15.5   0.0     2    60   219   278   218   284 0.91 Tetratricopeptide repeat
TPR_2                PF07719.12    34 sp|P0AB58|LAPB_ECOLI -            389   1.5e-12   46.3   7.0   6   6   3.3e-05     0.021   14.6   0.0     5    32   218   245   214   247 0.88 Tetratricopeptide repeat
Apc3                 PF12895.2     84 sp|P0AB58|LAPB_ECOLI -            389   7.7e-10   38.7   1.0   2   3   5.1e-09   3.3e-06   27.1   0.1     4    83   156   239   153   240 0.89 Anaphase-promoting complex, cyclosome, subunit 3
TPR_1                PF00515.23    34 sp|P0AB58|LAPB_ECOLI -            389   4.7e-09   35.4   2.5   4   4   5.6e-05     0.036   13.6   0.0     7    32   220   245   214   247 0.89 Tetratricopeptide repeat
TPR_8                PF13181.1     34 sp|P0AB58|LAPB_ECOLI -            389   1.8e-07   30.4   1.1   2   3   3.9e-05     0.025   14.3   0.0     5    29   218   242   214   246 0.89 Tetratricopeptide repeat
TPR_6                PF13174.1     33 sp|P0AB58|LAPB_ECOLI -            389   4.9e-05   23.5  18.4   4   5   0.00028      0.18   12.3   0.0     5    29   219   243   218   244 0.92 Tetratricopeptide repeat
TPR_20               PF14561.1     90 sp|P0AB58|LAPB_ECOLI -            389   8.2e-05   22.6  12.5   4   5   0.00029      0.19   11.8   0.1    10    54   202   246   196   253 0.90 Tetratricopeptide repeat
TPR_17               PF13431.1     34 sp|P0AB58|LAPB_ECOLI -            389   0.00011   22.1   0.1   3   3    0.0011      0.73   10.1   0.0     2    33   203   234   202   235 0.93 Tetratricopeptide repeat
Foie-gras_1          PF11817.3    247 sp|P0AB58|LAPB_ECOLI -            389    0.0038   16.7   3.5   2   3   0.00046       0.3   10.5   0.2   182   243   184   246   151   250 0.58 Foie gras liver health family 1
Foie-gras_1          PF11817.3    247 sp|P0AB58|LAPB_ECOLI -            389    0.0038   16.7   3.5   3   3   3.8e-05     0.024   14.0   0.9   157   235   192   266   183   277 0.88 Foie gras liver health family 1
TPR_9                PF13371.1     73 sp|P0AB58|LAPB_ECOLI -            389    0.0063   16.3   8.1   1   3   0.00047      0.31   10.9   0.5     1    66   147   210   147   220 0.79 Tetratricopeptide repeat
Ferritin             PF00210.19   142 sp|P0AB58|LAPB_ECOLI -            389     0.014   15.1   1.0   1   1   7.5e-05     0.048   13.4   1.0    40   126   152   280   150   295 0.75 Ferritin-like domain
TPR_21               PF09976.4    145 sp|P0AB58|LAPB_ECOLI -            389      0.11   12.4  14.6   2   2    0.0011      0.68    9.8   7.7    24   113   154   242   141   307 0.70 Tetratricopeptide repeat
SpoU_methylase       PF00588.14   142 sp|P37005|LAST_ECOLI -            228   3.3e-33  114.5   0.0   1   1   3.4e-37   5.1e-33  113.9   0.0     2   142     3   153     2   153 0.87 SpoU rRNA Methylase family
AMP-binding          PF00501.23   417 sp|P69451|LCFA_ECOLI -            561  1.6e-104  349.6   0.0   1   1  3.9e-108  1.9e-104  349.3   0.0     1   416    29   460    29   461 0.82 AMP-binding enzyme
AMP-binding_C        PF13193.1     73 sp|P69451|LCFA_ECOLI -            561   8.7e-17   61.8   1.1   2   2   1.7e-19   8.5e-16   58.6   0.1     1    73   469   543   469   543 0.95 AMP-binding enzyme C-terminal domain
AMP-binding_C_2      PF14535.1     96 sp|P69451|LCFA_ECOLI -            561     0.039   14.0   0.0   1   1     2e-05     0.098   12.7   0.0     1    43   462   504   462   523 0.77 AMP-binding enzyme C-terminal domain
Peptidase_S66        PF02016.10   284 sp|P76008|LDCA_ECOLI -            304   2.5e-77  259.6   0.0   1   1   3.8e-81   2.8e-77  259.4   0.0     3   284     6   286     4   286 0.92 LD-carboxypeptidase
DNA_pol_viral_N      PF00242.12   379 sp|P76008|LDCA_ECOLI -            304      0.11   11.5   0.0   1   1   2.2e-05      0.16   10.9   0.0   142   176   202   236   198   250 0.88 DNA polymerase (viral) N-terminal domain
OKR_DC_1             PF01276.15   417 sp|P0A9H3|LDCI_ECOLI -            715  3.1e-199  661.7   0.2   1   1  9.1e-203  4.5e-199  661.2   0.2     1   417   130   545   130   545 1.00 Orn/Lys/Arg decarboxylase, major domain
OKR_DC_1_C           PF03711.10   137 sp|P0A9H3|LDCI_ECOLI -            715   3.4e-54  182.5   1.0   1   1   1.4e-57   7.1e-54  181.5   1.0     1   136   570   703   570   704 0.99 Orn/Lys/Arg decarboxylase, C-terminal domain
OKR_DC_1_N           PF03709.10   115 sp|P0A9H3|LDCI_ECOLI -            715   5.1e-29  100.6   0.1   1   1     2e-32     1e-28   99.7   0.1     1   115    14   124    14   124 0.99 Orn/Lys/Arg decarboxylase, N-terminal domain
2-Hacid_dh_C         PF02826.14   178 sp|P52643|LDHD_ECOLI -            329   2.8e-53  179.7   0.0   1   1   1.7e-56   4.3e-53  179.1   0.0     1   178   110   297   110   297 0.94 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
2-Hacid_dh           PF00389.25   133 sp|P52643|LDHD_ECOLI -            329   2.5e-35  120.8   0.0   1   1   1.2e-38   2.9e-35  120.6   0.0     3   132     5   328     3   329 0.98 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
NAD_binding_2        PF03446.10   163 sp|P52643|LDHD_ECOLI -            329   2.3e-05   24.2   0.0   1   1   2.8e-08   6.9e-05   22.7   0.0     3   120   146   259   144   263 0.90 NAD binding domain of 6-phosphogluconate dehydrogenase
AdoHcyase_NAD        PF00670.16   162 sp|P52643|LDHD_ECOLI -            329     0.002   17.9   0.0   1   1   1.7e-06    0.0042   16.9   0.0    17   123   138   249   129   276 0.81 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
CoA_binding_2        PF13380.1    116 sp|P52643|LDHD_ECOLI -            329     0.057   13.5   0.0   1   1   6.2e-05      0.15   12.1   0.0    54   106    43    95    27   100 0.89 CoA binding domain
Ldr_toxin            PF13940.1     35 sp|Q6BF25|LDRD_ECOLI -             35   2.7e-24   84.6   1.3   1   1   3.9e-28   2.9e-24   84.5   1.3     1    35     1    35     1    35 1.00 Toxin Ldr, type I toxin-antitoxin system
DUF4396              PF14342.1    139 sp|Q6BF25|LDRD_ECOLI -             35     0.011   15.8   0.5   1   1   1.4e-06     0.011   15.8   0.5   108   131     8    31     1    35 0.88 Domain of unknown function (DUF4396)
Ldr_toxin            PF13940.1     35 sp|Q6BF86|LDRA_ECOLI -             35   2.4e-23   81.5   5.1   1   1   3.5e-27   2.6e-23   81.5   5.1     1    35     1    35     1    35 1.00 Toxin Ldr, type I toxin-antitoxin system
DUF4396              PF14342.1    139 sp|Q6BF86|LDRA_ECOLI -             35    0.0071   16.4   1.4   1   1   9.5e-07    0.0071   16.4   1.4   105   134     5    34     1    35 0.87 Domain of unknown function (DUF4396)
Ldr_toxin            PF13940.1     35 sp|Q6BF87|LDRB_ECOLI -             35   2.2e-23   81.6   5.0   1   1   3.2e-27   2.4e-23   81.6   5.0     1    35     1    35     1    35 1.00 Toxin Ldr, type I toxin-antitoxin system
DUF4396              PF14342.1    139 sp|Q6BF87|LDRB_ECOLI -             35     0.012   15.7   1.2   1   1   1.6e-06     0.012   15.7   1.2   105   134     5    34     1    35 0.87 Domain of unknown function (DUF4396)
Peptidase_A24        PF01478.13   106 sp|P25960|LEP4_ECOLI -            225   1.3e-29  102.5  10.6   2   2   1.7e-33   1.3e-29  102.5  10.6     1   105    81   189    81   190 0.95 Type IV leader peptidase family
Poty_coat            PF00767.13   237 sp|P25960|LEP4_ECOLI -            225      0.13   11.5   0.0   1   1   2.5e-05      0.19   10.9   0.0   112   141    22    51    19    56 0.88 Potyvirus coat protein
GTP_EFTU             PF00009.22   188 sp|P60785|LEPA_ECOLI -            599   6.4e-52  175.7   0.0   1   1   8.8e-55   1.5e-51  174.5   0.0     1   187     2   181     2   182 0.94 Elongation factor Tu GTP binding domain
LepA_C               PF06421.7    108 sp|P60785|LEPA_ECOLI -            599   7.5e-52  173.7   3.3   1   1   7.8e-55   1.3e-51  173.0   3.3     1   107   487   593   487   594 0.99 GTP-binding protein LepA C-terminus
EFG_C                PF00679.19    89 sp|P60785|LEPA_ECOLI -            599   3.1e-19   68.6   0.0   1   1   3.9e-22   6.5e-19   67.6   0.0     2    86   399   483   398   486 0.95 Elongation factor G C-terminus
GTP_EFTU_D2          PF03144.20    74 sp|P60785|LEPA_ECOLI -            599   9.6e-10   38.4   0.3   1   1   1.3e-12   2.1e-09   37.3   0.3     1    74   205   275   205   275 0.86 Elongation factor Tu domain 2
MMR_HSR1             PF01926.18   116 sp|P60785|LEPA_ECOLI -            599   7.6e-05   22.6   0.0   1   2   3.1e-07   0.00052   19.9   0.0     8   116    13   132     6   132 0.63 50S ribosome-binding GTPase
Ras                  PF00071.17   162 sp|P60785|LEPA_ECOLI -            599   9.4e-05   21.8   0.0   1   1     1e-07   0.00017   21.0   0.0    30   160    52   180    42   182 0.79 Ras family
EFG_II               PF14492.1     75 sp|P60785|LEPA_ECOLI -            599   0.00013   21.7   0.0   1   1   3.2e-07   0.00053   19.7   0.0     4    73   293   365   291   367 0.80 Elongation Factor G, domain II
PduV-EutP            PF10662.4    143 sp|P60785|LEPA_ECOLI -            599     0.014   14.8   0.0   1   1   1.9e-05     0.032   13.7   0.0    25   141    60   176    51   178 0.68 Ethanolamine utilisation - propanediol utilisation
SRPRB                PF09439.5    181 sp|P60785|LEPA_ECOLI -            599     0.069   12.3   0.0   1   1   9.1e-05      0.15   11.2   0.0    35    84    55   103    12   134 0.80 Signal recognition particle receptor beta subunit
Peptidase_S24        PF00717.18    70 sp|P00803|LEP_ECOLI  -            324   7.8e-21   73.5   0.1   1   1   3.1e-24   1.5e-20   72.5   0.1     1    64    86   160    86   170 0.92 Peptidase S24-like
Peptidase_S26        PF10502.4    138 sp|P00803|LEP_ECOLI  -            324   6.8e-09   35.3   0.0   2   2   3.1e-11   1.5e-07   30.9   0.0    96   138   260   302   233   302 0.84 Signal peptidase, peptidase S26
MFS_2                PF13347.1    428 sp|P00803|LEP_ECOLI  -            324     0.063   11.6   0.1   1   1     2e-05     0.097   11.0   0.1    80   131    11    96     2    96 0.75 MFS/sugar transport protein
HMGL-like            PF00682.14   237 sp|P09151|LEU1_ECOLI -            523   3.3e-91  305.1   3.0   1   1   1.1e-94   5.3e-91  304.4   3.0     1   236    13   251    13   252 0.99 HMGL-like
LeuA_dimer           PF08502.5    133 sp|P09151|LEU1_ECOLI -            523   4.3e-39  133.3   0.3   1   1   1.9e-42   9.4e-39  132.2   0.3     1   133   369   500   369   500 0.98 LeuA allosteric (dimerisation) domain
Trp_syntA            PF00290.15   259 sp|P09151|LEU1_ECOLI -            523     0.059   11.8   0.0   1   1   2.3e-05      0.12   10.9   0.0    23    50    25    52    20    74 0.91 Tryptophan synthase alpha chain
Iso_dh               PF00180.15   348 sp|P30125|LEU3_ECOLI -            363  6.2e-140  466.0   0.0   1   1  4.7e-144    7e-140  465.8   0.0     1   348     6   355     6   355 0.99 Isocitrate/isopropylmalate dehydrogenase
Aconitase            PF00330.15   465 sp|P0A6A6|LEUC_ECOLI -            466  7.9e-198  657.6   0.2   1   1    6e-202  8.9e-198  657.4   0.2     1   465     4   457     4   457 0.99 Aconitase family (aconitate hydratase)
Aconitase_C          PF00694.14   131 sp|P30126|LEUD_ECOLI -            201   9.3e-44  148.7   0.0   1   1   8.7e-48   1.3e-43  148.2   0.0     2   129     3   125     2   127 0.97 Aconitase C-terminal domain
LysE                 PF01810.13   191 sp|P76249|LEUE_ECOLI -            212   3.9e-53  179.5  12.0   1   1   9.4e-57   4.6e-53  179.3  12.0     2   189    19   209    18   211 0.97 LysE type translocator
TerC                 PF03741.11   184 sp|P76249|LEUE_ECOLI -            212    0.0082   15.5   1.9   1   1   3.6e-06     0.018   14.5   1.9    42   104    55   116    44   203 0.75 Integral membrane protein TerC family
LexA_DNA_bind        PF01726.11    65 sp|P0A7C2|LEXA_ECOLI -            202   7.2e-32  108.7   0.1   1   1   6.2e-35   1.1e-31  108.1   0.1     1    65     1    65     1    65 0.99 LexA DNA binding domain
Peptidase_S24        PF00717.18    70 sp|P0A7C2|LEXA_ECOLI -            202   9.5e-17   60.4   0.8   1   1   7.5e-20   1.4e-16   59.8   0.8     1    68   114   180   114   182 0.96 Peptidase S24-like
Rrf2                 PF02082.15    83 sp|P0A7C2|LEXA_ECOLI -            202   0.00053   20.0   0.0   1   1   6.2e-07    0.0011   18.9   0.0    24    72    24    73    14    74 0.88 Transcriptional regulator
HTH_24               PF13412.1     48 sp|P0A7C2|LEXA_ECOLI -            202    0.0011   18.3   0.1   1   1   2.3e-06    0.0043   16.4   0.0    19    48    27    57    26    57 0.96 Winged helix-turn-helix DNA-binding
HTH_20               PF12840.2     61 sp|P0A7C2|LEXA_ECOLI -            202    0.0023   17.7   0.0   1   1   2.7e-06    0.0049   16.6   0.0    19    57    15    59     5    61 0.82 Helix-turn-helix domain
Sigma70_r4           PF04545.11    50 sp|P0A7C2|LEXA_ECOLI -            202      0.03   13.6   0.1   1   1   5.8e-05      0.11   11.8   0.0     2    31     1    36     1    38 0.94 Sigma-70, region 4
HTH_11               PF08279.7     55 sp|P0A7C2|LEXA_ECOLI -            202     0.034   13.8   0.1   1   2   0.00014      0.25   10.9   0.0    17    55    27    67    14    67 0.92 HTH domain
HTH_Crp_2            PF13545.1     76 sp|P0A7C2|LEXA_ECOLI -            202     0.043   13.6   0.0   1   1   4.7e-05     0.086   12.6   0.0    27    61    24    62     7    73 0.79 Crp-like helix-turn-helix domain
FHIPEP               PF00771.15   658 sp|Q47153|LFHA_ECOLI -            579  4.3e-195  649.8   0.3   1   1  6.7e-199    5e-195  649.6   0.3   100   657     9   571     7   572 0.96 FHIPEP family
Borrelia_P13         PF05628.7    135 sp|Q47153|LFHA_ECOLI -            579     0.081   12.7   1.2   1   2   8.8e-05      0.65    9.7   0.5    25    57    77   107    72   163 0.69 Borrelia membrane protein P13
Leu_Phe_trans        PF03588.9    173 sp|P0A8P1|LFTR_ECOLI -            234   6.1e-75  250.1   0.0   1   1   9.7e-79   7.2e-75  249.8   0.0     2   173    35   204    34   204 0.99 Leucyl/phenylalanyl-tRNA protein transferase
Acetyltransf_6       PF13480.1    142 sp|P0A8P1|LFTR_ECOLI -            234      0.06   13.3   0.2   1   1   4.3e-05      0.32   10.9   0.2    54    98   112   156    72   175 0.82 Acetyltransferase (GNAT) domain
ADH_N                PF08240.7    109 sp|P39400|LGOD_ECOLI -            340   6.3e-34  116.0   1.6   1   1   1.7e-36   1.1e-33  115.1   1.6     1   108    27   133    27   134 0.97 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N           PF00107.21   130 sp|P39400|LGOD_ECOLI -            340   3.8e-24   84.6   0.1   1   1   9.8e-27   6.6e-24   83.9   0.1     1   129   173   300   173   301 0.98 Zinc-binding dehydrogenase
AlaDh_PNT_C          PF01262.16   168 sp|P39400|LGOD_ECOLI -            340   1.1e-06   28.3   0.3   1   1   3.7e-09   2.5e-06   27.1   0.3    21    60   164   203   154   217 0.91 Alanine dehydrogenase/PNT, C-terminal domain
ADH_zinc_N_2         PF13602.1    127 sp|P39400|LGOD_ECOLI -            340   1.8e-05   25.5   0.1   1   1   5.7e-08   3.9e-05   24.5   0.1    12   114   224   324   186   325 0.75 Zinc-binding dehydrogenase
3HCDH_N              PF02737.13   180 sp|P39400|LGOD_ECOLI -            340    0.0002   21.0   0.1   1   1   4.7e-07   0.00032   20.4   0.1     1    43   165   207   165   238 0.90 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AdoHcyase_NAD        PF00670.16   162 sp|P39400|LGOD_ECOLI -            340     0.001   18.9   0.3   1   2     2e-05     0.013   15.2   0.2    20    56   160   196   152   207 0.89 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
2-Hacid_dh_C         PF02826.14   178 sp|P39400|LGOD_ECOLI -            340    0.0012   18.0   0.0   1   1   3.4e-06    0.0023   17.1   0.0    36    73   163   200   151   216 0.86 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Pyr_redox            PF00070.22    80 sp|P39400|LGOD_ECOLI -            340    0.0024   18.2   0.2   1   1     8e-06    0.0054   17.1   0.2     2    32   166   196   165   208 0.89 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|P39400|LGOD_ECOLI -            340    0.0051   16.7   0.0   1   1   1.2e-05    0.0078   16.1   0.0     1    89   165   255   165   282 0.69 Pyridine nucleotide-disulphide oxidoreductase
HI0933_like          PF03486.9    409 sp|P39400|LGOD_ECOLI -            340     0.006   15.1   1.1   1   1   1.3e-05    0.0085   14.6   1.1     2    33   165   196   164   203 0.91 HI0933-like protein
FAD_oxidored         PF12831.2    428 sp|P39400|LGOD_ECOLI -            340    0.0074   15.4   0.5   1   1   1.5e-05      0.01   14.9   0.5     1    31   165   195   165   246 0.94 FAD dependent oxidoreductase
TrkA_N               PF02254.13   116 sp|P39400|LGOD_ECOLI -            340    0.0098   15.8   0.0   1   1     3e-05      0.02   14.8   0.0     1    58   166   224   166   255 0.76 TrkA-N domain
NAD_binding_7        PF13241.1    103 sp|P39400|LGOD_ECOLI -            340     0.014   15.6   0.0   1   1   4.6e-05     0.031   14.5   0.0     7    83   163   253   160   269 0.70 Putative NAD(P)-binding
Pyr_redox_3          PF13738.1    203 sp|P39400|LGOD_ECOLI -            340     0.015   15.4   2.5   1   1   5.2e-05     0.035   14.1   1.6     1    30   167   195   167   223 0.89 Pyridine nucleotide-disulphide oxidoreductase
FAD_binding_3        PF01494.14   356 sp|P39400|LGOD_ECOLI -            340     0.016   14.2   0.3   1   1   3.8e-05     0.025   13.6   0.3     3    32   165   194   164   205 0.89 FAD binding domain
NAD_binding_8        PF13450.1     68 sp|P39400|LGOD_ECOLI -            340     0.021   14.8   0.4   1   1     7e-05     0.047   13.7   0.4     1    28   168   195   168   206 0.92 NAD(P)-binding Rossmann-like domain
FAD_binding_2        PF00890.19   417 sp|P39400|LGOD_ECOLI -            340     0.039   12.7   2.4   1   1   9.5e-05     0.064   12.0   2.4     2    38   166   202   165   206 0.91 FAD binding domain
UDPG_MGDP_dh_N       PF03721.9    185 sp|P39400|LGOD_ECOLI -            340      0.04   13.2   0.0   1   1   9.8e-05     0.066   12.5   0.0     2    40   165   203   164   237 0.81 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
DAO                  PF01266.19   358 sp|P39400|LGOD_ECOLI -            340     0.061   12.2   1.1   1   1   0.00014     0.094   11.5   1.1     2    31   166   195   165   204 0.92 FAD dependent oxidoreductase
GIDA                 PF01134.17   392 sp|P39400|LGOD_ECOLI -            340     0.087   11.6   0.2   1   1   0.00018      0.12   11.1   0.2     1    39   165   209   165   249 0.65 Glucose inhibited division protein A
Cu2_monooxygen       PF01082.15   133 sp|P39400|LGOD_ECOLI -            340      0.13   12.2   0.0   1   1   0.00033      0.22   11.4   0.0    52   109     4    65     1    70 0.77 Copper type II ascorbate-dependent monooxygenase, N-terminal domain
Thi4                 PF01946.12   230 sp|P39400|LGOD_ECOLI -            340      0.13   11.2   1.1   1   1   0.00028      0.19   10.8   0.4    19    48   165   194   152   198 0.84 Thi4 family
MFS_1                PF07690.11   352 sp|P39398|LGOT_ECOLI -            453   2.2e-59  200.9  42.9   1   2   9.9e-61   4.9e-57  193.2  37.8     1   352    47   408    47   408 0.85 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P39398|LGOT_ECOLI -            453   2.2e-59  200.9  42.9   2   2   1.3e-06    0.0062   15.2   1.1   124   178   394   448   390   453 0.81 Major Facilitator Superfamily
LGT                  PF01790.13   256 sp|P60955|LGT_ECOLI  -            291   4.3e-89  297.8  15.6   1   1   1.3e-92     5e-89  297.6  15.6     1   255    11   281    11   282 0.95 Prolipoprotein diacylglyceryl transferase
Glyoxalase           PF00903.20   128 sp|P0AC81|LGUL_ECOLI -            135   3.6e-25   88.3   0.0   1   1   1.4e-28   4.2e-25   88.1   0.0     2   128     3   123     2   123 0.92 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_2         PF12681.2    108 sp|P0AC81|LGUL_ECOLI -            135   3.6e-18   66.1   0.0   1   1   1.4e-21   4.2e-18   65.9   0.0     1   108     8   124     8   124 0.77 Glyoxalase-like domain
Glyoxalase_4         PF13669.1    109 sp|P0AC81|LGUL_ECOLI -            135   5.1e-09   36.1   0.0   1   2   1.1e-11   3.1e-08   33.5   0.0     2   105     5   108     4   112 0.87 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
CppA_N               PF14506.1    125 sp|P0AC81|LGUL_ECOLI -            135    0.0098   15.5   0.0   1   1   3.9e-06     0.011   15.3   0.0     4    29     6    31     3    93 0.84 CppA N-terminal
DAO                  PF01266.19   358 sp|P37339|LHGO_ECOLI -            422   1.4e-62  211.7   0.0   1   1   1.3e-65   1.6e-62  211.4   0.0     1   356     3   390     3   392 0.86 FAD dependent oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P37339|LHGO_ECOLI -            422   2.5e-05   24.4   0.0   1   1   7.5e-07   0.00092   19.3   0.0     1   139     5   205     5   215 0.83 Pyridine nucleotide-disulphide oxidoreductase
Lycopene_cycl        PF05834.7    374 sp|P37339|LHGO_ECOLI -            422   4.5e-05   22.5   0.0   1   2   1.7e-05     0.021   13.7   0.0     1    36     3    38     3    45 0.92 Lycopene cyclase protein
Mqo                  PF06039.10   489 sp|P37339|LHGO_ECOLI -            422   0.00082   17.6   0.0   1   2   3.3e-05     0.041   12.0   0.0     6    58     3    53     1    61 0.85 Malate:quinone oxidoreductase (Mqo)
Pyr_redox_2          PF07992.9    201 sp|P37339|LHGO_ECOLI -            422    0.0013   18.6   0.2   1   1   4.2e-06    0.0052   16.6   0.2     1    39     3    44     3   218 0.89 Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8        PF13450.1     68 sp|P37339|LHGO_ECOLI -            422    0.0046   16.9   0.1   1   1   1.2e-05     0.015   15.3   0.1     1    32     6    39     6    59 0.86 NAD(P)-binding Rossmann-like domain
FAD_binding_2        PF00890.19   417 sp|P37339|LHGO_ECOLI -            422     0.025   13.4   0.2   1   1   0.00018      0.22   10.3   0.2     1    47     3    52     3   199 0.71 FAD binding domain
Amino_oxidase        PF01593.19   450 sp|P37339|LHGO_ECOLI -            422     0.041   12.9   0.0   1   1   4.8e-05     0.059   12.4   0.0   214   264   153   203   129   215 0.92 Flavin containing amine oxidoreductase
Trp_halogenase       PF04820.9    454 sp|P37339|LHGO_ECOLI -            422     0.044   12.4   0.1   1   2   0.00014      0.18   10.4   0.0     2    38     4    39     3    48 0.89 Tryptophan halogenase
DEAD_assoc           PF08494.6    187 sp|P30015|LHR_ECOLI  -           1538   2.1e-58  197.1   0.0   1   1   4.3e-61     7e-58  195.4   0.0     2   186   679   867   678   868 0.96 DEAD/H associated
DEAD                 PF00270.24   169 sp|P30015|LHR_ECOLI  -           1538   2.3e-25   89.0   0.0   1   1   3.8e-28   6.3e-25   87.6   0.0     1   163    31   218    31   225 0.88 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|P30015|LHR_ECOLI  -           1538   2.1e-13   49.9   0.1   1   1   4.2e-16     7e-13   48.2   0.1    12    75   354   417   348   419 0.96 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|P30015|LHR_ECOLI  -           1538   2.4e-07   30.7   0.0   1   1   3.1e-10   5.2e-07   29.6   0.0    23   182    42   217    21   219 0.74 Type III restriction enzyme, res subunit
HTH_20               PF12840.2     61 sp|P30015|LHR_ECOLI  -           1538    0.0022   17.7   3.7   2   2   0.00027      0.45   10.3   0.5    10    54  1023  1067  1017  1069 0.94 Helix-turn-helix domain
HTH_5                PF01022.15    47 sp|P30015|LHR_ECOLI  -           1538    0.0078   15.8   0.1   2   2   0.00024      0.39   10.4   0.1    17    45  1039  1067  1028  1068 0.89 Bacterial regulatory protein, arsR family
AAA_22               PF13401.1    131 sp|P30015|LHR_ECOLI  -           1538     0.018   15.1   0.1   1   1   7.9e-05      0.13   12.3   0.1     4   101    44   188    41   214 0.68 AAA domain
PhoH                 PF02562.11   205 sp|P30015|LHR_ECOLI  -           1538      0.09   11.9   0.0   1   1    0.0001      0.16   11.1   0.0     6    44    31    69    26    78 0.86 PhoH-like protein
DNA_ligase_aden      PF01653.13   315 sp|P25772|LIGB_ECOLI -            560   1.6e-83  280.3   0.0   1   1   2.7e-87     2e-83  279.9   0.0     2   314    29   307    28   308 0.98 NAD-dependent DNA ligase adenylation domain
DNA_ligase_OB        PF03120.11    82 sp|P25772|LIGB_ECOLI -            560   1.3e-26   92.0   0.2   1   1   3.4e-30   2.5e-26   91.1   0.2     2    80   311   391   310   393 0.95 NAD-dependent DNA ligase OB-fold domain
Radical_SAM          PF04055.16   166 sp|P60716|LIPA_ECOLI -            321   1.4e-14   54.6   0.0   1   1   1.4e-18   2.1e-14   54.0   0.0     4   165    91   251    88   252 0.91 Radical SAM superfamily
BPL_LplA_LipB        PF03099.14   125 sp|P60720|LIPB_ECOLI -            213   1.1e-18   67.4   0.0   1   1   1.1e-22   1.6e-18   66.9   0.0    15   125    57   159    47   159 0.85 Biotin/lipoate A/B protein ligase family
Peptidase_U49        PF10463.4    206 sp|P11072|LIT_ECOLI  -            297   1.5e-69  233.9   1.3   1   1   3.8e-73   1.9e-69  233.6   1.3     1   206    61   258    61   258 0.99 Peptidase U49
DUF2417              PF10329.4    232 sp|P11072|LIT_ECOLI  -            297     0.039   13.3   0.1   1   1   1.8e-05     0.087   12.2   0.1   131   178    64   113    50   122 0.78 Region of unknown function (DUF2417)
ABC_tran             PF00005.22   137 sp|P22731|LIVF_ECOLI -            237   2.1e-33  115.5   0.0   1   1   5.3e-36   2.9e-33  115.0   0.0     1   136    21   165    21   166 0.92 ABC transporter
AAA_21               PF13304.1    303 sp|P22731|LIVF_ECOLI -            237   2.9e-11   43.8   0.0   1   2   1.2e-05    0.0063   16.5   0.0     4    43    36    72    33    82 0.74 AAA domain
AAA_21               PF13304.1    303 sp|P22731|LIVF_ECOLI -            237   2.9e-11   43.8   0.0   2   2   1.9e-08   1.1e-05   25.6   0.0   237   294   138   192    94   193 0.87 AAA domain
AAA_15               PF13175.1    415 sp|P22731|LIVF_ECOLI -            237   0.00023   20.3   0.0   1   2   5.9e-05     0.032   13.2   0.0    20    43    28    62     6   100 0.72 AAA ATPase domain
AAA_29               PF13555.1     62 sp|P22731|LIVF_ECOLI -            237   0.00055   19.3   0.1   1   1   2.1e-06    0.0012   18.3   0.1    14    40    20    48    12    52 0.74 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|P22731|LIVF_ECOLI -            237    0.0054   15.9   0.0   1   1   1.6e-05    0.0089   15.2   0.0    22    66    17    62     2    79 0.81 Protein of unknown function, DUF258
Septin               PF00735.13   281 sp|P22731|LIVF_ECOLI -            237    0.0091   15.0   0.0   1   1   2.5e-05     0.014   14.4   0.0     8    96    35   126    31   139 0.78 Septin
AAA_23               PF13476.1    202 sp|P22731|LIVF_ECOLI -            237    0.0095   16.2   0.1   1   1   3.6e-05      0.02   15.2   0.1    13    38    24    50    14    53 0.69 AAA domain
UPF0079              PF02367.12   123 sp|P22731|LIVF_ECOLI -            237     0.011   15.4   0.1   1   1   3.4e-05     0.019   14.6   0.1     8    34    24    50    18    58 0.85 Uncharacterised P-loop hydrolase UPF0079
BCA_ABC_TP_C         PF12399.3     23 sp|P22731|LIVF_ECOLI -            237     0.014   15.0   0.0   1   1   5.5e-05      0.03   13.9   0.0    10    23   223   236   217   236 0.87 Branched-chain amino acid ATP-binding cassette transporter
AAA_14               PF13173.1    128 sp|P22731|LIVF_ECOLI -            237     0.015   15.2   0.0   1   1    0.0001     0.056   13.3   0.0     2    46    31    73    30    95 0.77 AAA domain
AAA_25               PF13481.1    194 sp|P22731|LIVF_ECOLI -            237     0.016   14.5   0.8   1   1   0.00014     0.079   12.3   0.6    29    55    27    53    21   193 0.93 AAA domain
SbcCD_C              PF13558.1     90 sp|P22731|LIVF_ECOLI -            237     0.019   14.8   0.2   1   1   0.00047      0.26   11.2   0.2    26    83   131   175   120   182 0.65 Putative exonuclease SbcCD, C subunit
AAA_16               PF13191.1    185 sp|P22731|LIVF_ECOLI -            237     0.024   14.6   0.0   1   1   7.1e-05     0.039   13.9   0.0    19    80    26    83    14   164 0.53 AAA ATPase domain
AAA_13               PF13166.1    712 sp|P22731|LIVF_ECOLI -            237     0.045   12.2   0.0   1   1   0.00012     0.065   11.6   0.0    18    76    34   102    19   125 0.80 AAA domain
Zot                  PF05707.7    193 sp|P22731|LIVF_ECOLI -            237     0.047   13.1   0.0   1   1   0.00034      0.18   11.2   0.0    68   128    66   199    32   209 0.94 Zonular occludens toxin (Zot)
cobW                 PF02492.14   178 sp|P22731|LIVF_ECOLI -            237     0.051   13.0   0.0   1   1   0.00014     0.079   12.3   0.0     3    24    34    54    32    86 0.78 CobW/HypB/UreG, nucleotide-binding domain
AAA_33               PF13671.1    143 sp|P22731|LIVF_ECOLI -            237     0.055   13.3   0.1   1   1   0.00023      0.13   12.1   0.1     2    25    34    59    33   202 0.71 AAA domain
AAA_22               PF13401.1    131 sp|P22731|LIVF_ECOLI -            237     0.056   13.5   0.1   1   2   0.00082      0.45   10.6   0.0     3    24    30    51    27    81 0.89 AAA domain
MMR_HSR1             PF01926.18   116 sp|P22731|LIVF_ECOLI -            237      0.08   12.8   0.0   1   1   0.00043      0.23   11.3   0.0     2    39    34    71    33   211 0.76 50S ribosome-binding GTPase
Miro                 PF08477.8    119 sp|P22731|LIVF_ECOLI -            237     0.087   13.3   0.0   1   1   0.00032      0.18   12.3   0.0     2    25    34    57    34    98 0.74 Miro-like protein
AAA_24               PF13479.1    213 sp|P22731|LIVF_ECOLI -            237       0.1   12.1   0.0   1   1   0.00032      0.17   11.4   0.0     5    26    33    55    29    90 0.83 AAA domain
NACHT                PF05729.7    166 sp|P22731|LIVF_ECOLI -            237      0.11   12.1   0.6   1   1   0.00045      0.24   11.0   0.1     2    21    33    52    32    58 0.88 NACHT domain
KilA-N               PF04383.8    111 sp|P22731|LIVF_ECOLI -            237      0.13   11.8   0.0   1   1   0.00041      0.22   11.1   0.0    30    98    65   125    60   135 0.89 KilA-N domain
AAA_28               PF13521.1    163 sp|P22731|LIVF_ECOLI -            237      0.21   11.5   1.7   1   1   0.00061      0.33   10.8   0.9     2    19    34    51    33   118 0.85 AAA domain
ABC_tran             PF00005.22   137 sp|P0A9S7|LIVG_ECOLI -            255   1.8e-32  112.4   0.0   1   1   2.6e-35   2.8e-32  111.8   0.0     1   136    21   181    21   182 0.91 ABC transporter
BCA_ABC_TP_C         PF12399.3     23 sp|P0A9S7|LIVG_ECOLI -            255   4.2e-11   42.2   0.1   1   1   9.6e-14     1e-10   41.0   0.1     3    23   233   253   231   253 0.95 Branched-chain amino acid ATP-binding cassette transporter
AAA_21               PF13304.1    303 sp|P0A9S7|LIVG_ECOLI -            255   4.7e-08   33.3   0.2   1   2   9.4e-07   0.00099   19.1   0.0     4    24    36    56    33    80 0.77 AAA domain
AAA_21               PF13304.1    303 sp|P0A9S7|LIVG_ECOLI -            255   4.7e-08   33.3   0.2   2   2   0.00011      0.11   12.4   0.0   254   293   171   208   145   211 0.81 AAA domain
AAA_23               PF13476.1    202 sp|P0A9S7|LIVG_ECOLI -            255   0.00022   21.5   0.5   1   1   5.3e-07   0.00056   20.2   0.1    11    40    22    52    13    61 0.83 AAA domain
AAA_22               PF13401.1    131 sp|P0A9S7|LIVG_ECOLI -            255    0.0007   19.7   0.8   1   2   0.00061      0.64   10.1   0.0     4    24    31    51    28    69 0.88 AAA domain
SMC_N                PF02463.14   220 sp|P0A9S7|LIVG_ECOLI -            255     0.001   18.3   0.1   1   2   0.00021      0.22   10.7   0.0    24    44    31    51    21    59 0.85 RecF/RecN/SMC N terminal domain
AAA_15               PF13175.1    415 sp|P0A9S7|LIVG_ECOLI -            255    0.0013   17.8   0.3   1   2   0.00017      0.18   10.8   0.0    15    43    24    52    17    79 0.79 AAA ATPase domain
AAA_29               PF13555.1     62 sp|P0A9S7|LIVG_ECOLI -            255    0.0087   15.5   0.0   1   1   1.7e-05     0.018   14.5   0.0    18    42    27    50    20    58 0.80 P-loop containing region of AAA domain
FeoB_N               PF02421.13   156 sp|P0A9S7|LIVG_ECOLI -            255     0.045   13.0   0.1   1   1     8e-05     0.085   12.1   0.1     3    27    34    58    32    60 0.88 Ferrous iron transport protein B
DUF258               PF03193.11   161 sp|P0A9S7|LIVG_ECOLI -            255     0.049   12.8   0.0   1   1   8.9e-05     0.094   11.8   0.0    35    59    31    55    13    88 0.84 Protein of unknown function, DUF258
SRP54                PF00448.17   196 sp|P0A9S7|LIVG_ECOLI -            255     0.066   12.6   0.3   1   2   0.00018      0.19   11.1   0.0     3    33    33    63    31    66 0.83 SRP54-type protein, GTPase domain
AAA_16               PF13191.1    185 sp|P0A9S7|LIVG_ECOLI -            255     0.089   12.7   1.0   1   1   0.00041      0.43   10.5   1.0    25    58    32    65    23   212 0.62 AAA ATPase domain
AAA_33               PF13671.1    143 sp|P0A9S7|LIVG_ECOLI -            255      0.09   12.6   0.1   1   1   0.00011      0.12   12.2   0.1     2    33    34    68    33   209 0.76 AAA domain
MMR_HSR1             PF01926.18   116 sp|P0A9S7|LIVG_ECOLI -            255      0.11   12.4   0.2   1   1   0.00024      0.26   11.2   0.2     2    21    34    53    33   229 0.83 50S ribosome-binding GTPase
BPD_transp_2         PF02653.11   267 sp|P0AEX7|LIVH_ECOLI -            308   1.2e-68  231.0  41.8   1   1   1.8e-72   1.3e-68  230.8  41.8     1   267    11   292    11   292 0.98 Branched-chain amino acid transport system / permease component
Herpes_pp38          PF04846.8     63 sp|P0AEX7|LIVH_ECOLI -            308     0.015   14.5   2.1   1   1   6.2e-06     0.046   13.0   2.1    17    59   206   248   189   251 0.87 Herpesvirus pp38 phosphoprotein
Peripla_BP_6         PF13458.1    343 sp|P0AD96|LIVJ_ECOLI -            367   6.3e-57  193.4   6.3   1   1   2.5e-60   7.4e-57  193.2   6.3     2   325    26   344    25   361 0.94 Periplasmic binding protein
ANF_receptor         PF01094.23   348 sp|P0AD96|LIVJ_ECOLI -            367   4.8e-49  167.0   0.0   1   1     2e-52   5.8e-49  166.7   0.0     4   348    47   358    44   358 0.92 Receptor family ligand binding region
Peripla_BP_5         PF13433.1    364 sp|P0AD96|LIVJ_ECOLI -            367   1.5e-20   73.2   0.0   1   1   6.7e-24     2e-20   72.8   0.0     1   323    26   343    26   350 0.91 Periplasmic binding protein domain
PGM_PMM_I            PF02878.11   138 sp|P0AD96|LIVJ_ECOLI -            367    0.0022   17.4   0.3   2   2   6.4e-05      0.19   11.2   0.0    30    75   151   196   146   211 0.90 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
Fe-ADH               PF00465.14   366 sp|P0AD96|LIVJ_ECOLI -            367    0.0077   14.9   0.0   1   1   5.3e-06     0.016   13.8   0.0     7    82   148   220   146   224 0.87 Iron-containing alcohol dehydrogenase
Peripla_BP_6         PF13458.1    343 sp|P04816|LIVK_ECOLI -            369   1.9e-63  214.9   4.3   1   1   8.7e-67   2.2e-63  214.7   4.3     2   342    26   363    25   364 0.94 Periplasmic binding protein
ANF_receptor         PF01094.23   348 sp|P04816|LIVK_ECOLI -            369   1.5e-52  178.5   0.0   1   1   7.2e-56   1.8e-52  178.2   0.0     4   348    47   360    44   360 0.94 Receptor family ligand binding region
Peripla_BP_5         PF13433.1    364 sp|P04816|LIVK_ECOLI -            369     2e-22   79.4   0.0   1   1   9.4e-26   2.3e-22   79.2   0.0     1   323    26   345    26   365 0.92 Periplasmic binding protein domain
PGM_PMM_I            PF02878.11   138 sp|P04816|LIVK_ECOLI -            369    0.0013   18.2   0.4   2   2   3.8e-05     0.093   12.2   0.0    30    75   151   196   145   213 0.90 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
Fe-ADH               PF00465.14   366 sp|P04816|LIVK_ECOLI -            369    0.0048   15.5   0.0   1   1   3.9e-06    0.0096   14.5   0.0     6    82   147   220   145   221 0.89 Iron-containing alcohol dehydrogenase
LppC                 PF04348.8    536 sp|P04816|LIVK_ECOLI -            369     0.022   13.3   0.0   2   3   0.00031      0.76    8.2   0.0   202   282   146   220   140   239 0.87 LppC putative lipoprotein
BPD_transp_2         PF02653.11   267 sp|P22729|LIVM_ECOLI -            425   2.6e-57  193.8  28.1   2   2   3.5e-61   2.6e-57  193.8  28.1     3   267   112   398   110   398 0.99 Branched-chain amino acid transport system / permease component
DUF3382              PF11862.3    101 sp|P22729|LIVM_ECOLI -            425   9.6e-24   83.2   6.6   1   4   1.3e-27   9.6e-24   83.2   6.6     4   101     5   103     2   103 0.98 Domain of unknown function (DUF3382)
FMN_dh               PF01070.13   357 sp|P33232|LLDD_ECOLI -            396  1.1e-125  419.1   0.0   1   1  9.4e-129  1.5e-125  418.7   0.0     1   355    13   375    13   377 0.96 FMN-dependent dehydrogenase
IMPDH                PF00478.20   352 sp|P33232|LLDD_ECOLI -            396   1.2e-05   24.4   4.3   1   2   4.2e-08   6.9e-05   21.8   1.3   202   244   292   333   277   346 0.81 IMP dehydrogenase / GMP reductase domain
NMO                  PF03060.10   330 sp|P33232|LLDD_ECOLI -            396   2.9e-05   23.3   2.7   1   1   2.6e-08   4.2e-05   22.8   2.7   138   225   248   335   244   373 0.87 Nitronate monooxygenase
IGPS                 PF00218.16   254 sp|P33232|LLDD_ECOLI -            396   0.00024   20.2   0.0   1   2   8.2e-07    0.0013   17.7   0.0   167   242   255   333   244   342 0.82 Indole-3-glycerol phosphate synthase
Glu_synthase         PF01645.12   368 sp|P33232|LLDD_ECOLI -            396    0.0012   17.8   0.8   1   1   1.2e-06    0.0019   17.1   0.8   269   310   295   336   266   342 0.85 Conserved region in glutamate synthase
ThiG                 PF05690.9    247 sp|P33232|LLDD_ECOLI -            396    0.0031   16.6   0.7   2   2   0.00027      0.44    9.5   0.7   164   207   287   332   280   347 0.83 Thiazole biosynthesis protein ThiG
PcrB                 PF01884.12   231 sp|P33232|LLDD_ECOLI -            396    0.0068   15.6   0.9   1   2   0.00058      0.96    8.6   0.0   190   212   252   274   247   280 0.92 PcrB family
His_biosynth         PF00977.16   229 sp|P33232|LLDD_ECOLI -            396      0.03   13.5   0.2   2   2    0.0002      0.34   10.1   0.1   186   224   293   333   279   338 0.57 Histidine biosynthesis protein
DHO_dh               PF01180.16   295 sp|P33232|LLDD_ECOLI -            396     0.043   12.7   0.2   1   1   4.1e-05     0.067   12.1   0.2   232   279   288   335   276   350 0.90 Dihydroorotate dehydrogenase
Lactate_perm         PF02652.9    522 sp|P33231|LLDP_ECOLI -            551  1.9e-234  778.9  41.6   1   1  1.5e-238  2.2e-234  778.8  41.6     1   522    16   542    16   542 0.99 L-lactate permease
CN_hydrolase         PF00795.17   186 sp|P23930|LNT_ECOLI  -            512   9.3e-27   93.5   0.0   1   1   1.1e-30   1.6e-26   92.8   0.0     2   186   224   412   223   412 0.89 Carbon-nitrogen hydrolase
Peptidase_M48        PF01435.13   226 sp|P25894|LOIP_ECOLI -            252   2.8e-27   95.7   0.3   1   1   1.4e-30   3.5e-27   95.4   0.3     5   226    40   241    36   241 0.88 Peptidase family M48
DUF2201_N            PF13203.1    292 sp|P25894|LOIP_ECOLI -            252     0.018   14.2   0.0   1   1   9.7e-06     0.024   13.8   0.0    36   115   100   180    88   250 0.66 Putative metallopeptidase domain
HlyD_2               PF12700.2    328 sp|P25894|LOIP_ECOLI -            252     0.046   12.8   0.3   1   1   2.3e-05     0.056   12.5   0.3    51   174    22   189    20   228 0.76 HlyD family secretion protein
DUF1704              PF08014.6    349 sp|P25894|LOIP_ECOLI -            252      0.08   11.9   0.0   1   1   4.8e-05      0.12   11.3   0.0   108   174    66   133    14   142 0.68 Domain of unknown function (DUF1704)
DUF955               PF06114.8    122 sp|P25894|LOIP_ECOLI -            252      0.09   12.5   0.0   1   1   9.9e-05      0.24   11.1   0.0    38    86   120   200   115   203 0.83 Domain of unknown function (DUF955)
LolA                 PF03548.10   165 sp|P61316|LOLA_ECOLI -            203   3.5e-57  192.6   4.4   1   1   8.2e-61     4e-57  192.4   4.4     2   165    33   191    32   191 0.99 Outer membrane lipoprotein carrier protein LolA
DUF3220              PF11516.3    106 sp|P61316|LOLA_ECOLI -            203      0.04   13.8   0.1   1   1   1.5e-05     0.076   12.9   0.1     3    73    30   104    28   131 0.71 Protein of unknown function (DUF3120)
LolB                 PF03550.9    157 sp|P61320|LOLB_ECOLI -            207   4.9e-56  188.6   1.6   1   1   1.3e-59   6.6e-56  188.2   1.6     2   157    49   204    48   204 0.99 Outer membrane lipoprotein LolB
N_NLPC_P60           PF12912.2    124 sp|P61320|LOLB_ECOLI -            207     0.052   13.6   0.0   1   1   2.2e-05      0.11   12.6   0.0     6    48    14    59    10   100 0.74 NLPC_P60 stabilising domain, N term
MacB_PCD             PF12704.2    232 sp|P0ADC3|LOLC_ECOLI -            399     3e-18   66.2   0.1   1   2   6.1e-22     3e-18   66.2   0.1     9   227    24   237    11   239 0.79 MacB-like periplasmic core domain
FtsX                 PF02687.16   121 sp|P0ADC3|LOLC_ECOLI -            399   2.7e-17   62.6  17.6   2   2   6.1e-21     3e-17   62.4  14.5     2   121   269   392   268   392 0.95 FtsX-like permease family
Pam17                PF08566.5    174 sp|P0ADC3|LOLC_ECOLI -            399    0.0093   15.6   1.2   2   2     4e-05       0.2   11.3   0.4    30   103   256   336   229   344 0.66 Mitochondrial import protein Pam17
ABC_tran             PF00005.22   137 sp|P75957|LOLD_ECOLI -            233   7.6e-37  126.6   0.0   1   1   1.8e-39     1e-36  126.2   0.0     1   136    25   173    25   174 0.96 ABC transporter
AAA_21               PF13304.1    303 sp|P75957|LOLD_ECOLI -            233   1.7e-11   44.6   0.1   1   2   5.8e-06    0.0033   17.4   0.2     1    49    37    68    37   102 0.76 AAA domain
AAA_21               PF13304.1    303 sp|P75957|LOLD_ECOLI -            233   1.7e-11   44.6   0.1   2   2   2.1e-08   1.2e-05   25.4   0.0   234   299   143   206   106   210 0.90 AAA domain
SMC_N                PF02463.14   220 sp|P75957|LOLD_ECOLI -            233   6.4e-07   28.8   0.2   1   1   6.8e-09   3.9e-06   26.2   0.2    25   211    36   218    26   224 0.69 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P75957|LOLD_ECOLI -            233   6.2e-05   22.4   0.3   1   1   2.1e-07   0.00012   21.5   0.3    14    40    27    52    21    71 0.75 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|P75957|LOLD_ECOLI -            233   8.7e-05   22.5   3.9   1   1   8.3e-07   0.00048   20.1   3.9    16   169    25   216    18   229 0.62 AAA ATPase domain
SbcCD_C              PF13558.1     90 sp|P75957|LOLD_ECOLI -            233   0.00014   21.7   0.0   1   1     3e-06    0.0017   18.2   0.0    21    88   134   188   123   190 0.75 Putative exonuclease SbcCD, C subunit
DUF258               PF03193.11   161 sp|P75957|LOLD_ECOLI -            233    0.0017   17.5   0.1   1   1   4.4e-06    0.0025   17.0   0.1    24    57    23    57     4    82 0.81 Protein of unknown function, DUF258
FtsK_SpoIIIE         PF01580.13   205 sp|P75957|LOLD_ECOLI -            233    0.0028   17.1   0.2   1   1   9.6e-06    0.0055   16.2   0.2    29    56    26    53    17    55 0.82 FtsK/SpoIIIE family
AAA_10               PF12846.2    304 sp|P75957|LOLD_ECOLI -            233     0.008   15.6   1.3   1   2   0.00013     0.075   12.4   0.8     4    21    38    55    35    68 0.84 AAA-like domain
AAA_25               PF13481.1    194 sp|P75957|LOLD_ECOLI -            233     0.012   14.9   0.2   1   2   0.00012     0.067   12.5   0.0    31    50    33    52    21    74 0.86 AAA domain
AAA_33               PF13671.1    143 sp|P75957|LOLD_ECOLI -            233     0.018   14.9   0.8   1   1   0.00014     0.082   12.7   0.8     2    20    38    56    37   224 0.58 AAA domain
AAA_22               PF13401.1    131 sp|P75957|LOLD_ECOLI -            233     0.025   14.6   1.3   1   1    0.0002      0.11   12.6   0.3     4    23    35    54    31    63 0.88 AAA domain
AAA_17               PF13207.1    121 sp|P75957|LOLD_ECOLI -            233      0.03   15.1   0.0   1   1    0.0001     0.057   14.2   0.0     3    19    39    55    37   109 0.90 AAA domain
Miro                 PF08477.8    119 sp|P75957|LOLD_ECOLI -            233     0.071   13.5   0.1   1   1   0.00022      0.13   12.7   0.1     3    25    39    61    38    92 0.82 Miro-like protein
AAA_18               PF13238.1    129 sp|P75957|LOLD_ECOLI -            233     0.074   13.3   0.1   1   1   0.00037      0.21   11.9   0.0     2    22    39    59    39    98 0.76 AAA domain
DUF87                PF01935.12   229 sp|P75957|LOLD_ECOLI -            233      0.08   12.7   0.7   1   1   0.00028      0.16   11.7   0.7    26    43    38    55    35    56 0.91 Domain of unknown function DUF87
ArgK                 PF03308.11   267 sp|P75957|LOLD_ECOLI -            233     0.083   11.6   0.1   1   1   0.00023      0.13   10.9   0.1    15    50    21    56    13    64 0.88 ArgK protein
MMR_HSR1             PF01926.18   116 sp|P75957|LOLD_ECOLI -            233      0.12   12.2   0.4   1   1    0.0004      0.23   11.4   0.4     2    19    38    55    37   219 0.91 50S ribosome-binding GTPase
AAA_23               PF13476.1    202 sp|P75957|LOLD_ECOLI -            233      0.13   12.5   0.0   1   1   0.00039      0.22   11.8   0.0    15    36    28    52    19    56 0.81 AAA domain
NB-ARC               PF00931.17   287 sp|P75957|LOLD_ECOLI -            233      0.14   10.9   0.1   1   1   0.00043      0.25   10.1   0.1    17    36    33    52    19    55 0.82 NB-ARC domain
AAA_15               PF13175.1    415 sp|P75957|LOLD_ECOLI -            233      0.14   11.1   0.0   1   1   0.00041      0.24   10.4   0.0    15    47    28    69    16   100 0.75 AAA ATPase domain
MobB                 PF03205.9    140 sp|P75957|LOLD_ECOLI -            233      0.15   11.7   0.0   1   1   0.00049      0.28   10.8   0.0     3    18    38    53    36    56 0.88 Molybdopterin guanine dinucleotide synthesis protein B
NACHT                PF05729.7    166 sp|P75957|LOLD_ECOLI -            233      0.16   11.6   0.8   1   1   0.00049      0.28   10.8   0.4     2    18    37    53    36    57 0.89 NACHT domain
Pox_A32              PF04665.7    241 sp|P75957|LOLD_ECOLI -            233      0.17   11.1   0.2   1   1    0.0005      0.29   10.4   0.2    16    32    38    54    25    60 0.87 Poxvirus A32 protein
MacB_PCD             PF12704.2    232 sp|P75958|LOLE_ECOLI -            414   1.3e-25   90.3   0.2   1   2   4.3e-29   1.3e-25   90.3   0.2    11   229    26   241    21   244 0.83 MacB-like periplasmic core domain
FtsX                 PF02687.16   121 sp|P75958|LOLE_ECOLI -            414     2e-22   79.2  12.5   2   2   8.2e-26   2.4e-22   78.9   6.5     2   121   274   407   273   407 0.98 FtsX-like permease family
NrfD                 PF03916.9    313 sp|P75958|LOLE_ECOLI -            414    0.0063   15.9   5.7   2   2   2.1e-06    0.0063   15.9   5.7   174   275   268   393   257   404 0.84 Polysulphide reductase, NrfD
DUF4271              PF14093.1    208 sp|P75958|LOLE_ECOLI -            414      0.14   11.8   0.1   2   2   4.6e-05      0.14   11.8   0.1    32    80   360   406   328   412 0.81 Domain of unknown function (DUF4271)
Neurensin            PF14927.1    141 sp|P75958|LOLE_ECOLI -            414      0.22   10.8   1.2   1   1   9.7e-05      0.29   10.5   0.0    48    99    27    86    11    95 0.71 Neurensin
Ail_Lom              PF06316.6    199 sp|P77184|LOMR_ECOLI -            164   2.8e-90  301.1   6.5   1   2   1.3e-65   3.2e-62  209.5   2.2    92   199     1   108     1   108 0.99 Enterobacterial Ail/Lom protein
Ail_Lom              PF06316.6    199 sp|P77184|LOMR_ECOLI -            164   2.8e-90  301.1   6.5   2   2   2.9e-30   7.2e-27   94.1   0.1   145   199   110   164   109   164 0.99 Enterobacterial Ail/Lom protein
OMP_b-brl            PF13505.1    176 sp|P77184|LOMR_ECOLI -            164   1.3e-21   77.3   6.3   1   2   5.6e-17   1.4e-13   51.1   1.8    86   176     6   108     2   108 0.92 Outer membrane protein beta-barrel domain
OMP_b-brl            PF13505.1    176 sp|P77184|LOMR_ECOLI -            164   1.3e-21   77.3   6.3   2   2   4.3e-10   1.1e-06   28.7   0.2   123   176   115   164   110   164 0.94 Outer membrane protein beta-barrel domain
OmpA_membrane        PF01389.12   183 sp|P77184|LOMR_ECOLI -            164   0.00088   18.8   0.0   1   2   1.8e-05     0.045   13.2   0.0    85   148    12    87     6    89 0.78 OmpA-like transmembrane domain
OprF                 PF05736.6    184 sp|P77184|LOMR_ECOLI -            164     0.019   14.4   0.6   1   2   0.00026      0.65    9.4   0.2   104   179    37   109    23   114 0.77 OprF membrane domain
AAA_32               PF13654.1    509 sp|P75867|LONH_ECOLI -            586   5.5e-18   64.9   0.0   1   1     1e-21   7.5e-18   64.4   0.0   322   469   140   286    68   321 0.85 AAA domain
Lon_C                PF05362.8    205 sp|P75867|LONH_ECOLI -            586   2.3e-10   40.1   0.0   1   1     5e-14   3.7e-10   39.4   0.0   108   203   435   541   431   543 0.81 Lon protease (S16) C-terminal proteolytic domain
Lon_C                PF05362.8    205 sp|P0A9M0|LON_ECOLI  -            784   2.2e-99  330.8   0.1   1   1  7.6e-102   3.9e-99  330.0   0.1     2   204   570   772   569   773 0.99 Lon protease (S16) C-terminal proteolytic domain
LON                  PF02190.11   205 sp|P0A9M0|LON_ECOLI  -            784   5.2e-43  147.1   0.3   1   1     1e-45   5.2e-43  147.1   0.3     1   204    10   201    10   202 0.91 ATP-dependent protease La (LON) domain
AAA                  PF00004.24   132 sp|P0A9M0|LON_ECOLI  -            784     7e-18   65.0   0.0   1   1   3.1e-20   1.6e-17   63.9   0.0     1   128   352   489   352   493 0.93 ATPase family associated with various cellular activities (AAA)
AAA_5                PF07728.9    139 sp|P0A9M0|LON_ECOLI  -            784   5.8e-10   39.0   0.0   1   1   4.1e-12   2.1e-09   37.2   0.0     2   138   352   484   351   485 0.79 AAA domain (dynein-related subfamily)
ChlI                 PF13541.1    121 sp|P0A9M0|LON_ECOLI  -            784     5e-08   32.4   0.0   1   1   2.5e-10   1.3e-07   31.1   0.0     1   121   613   740   613   740 0.83 Subunit ChlI of Mg-chelatase
AAA_16               PF13191.1    185 sp|P0A9M0|LON_ECOLI  -            784   7.8e-06   25.9   0.0   1   1   6.5e-08   3.3e-05   23.9   0.0     2    54   324   379   323   471 0.77 AAA ATPase domain
AAA_PrkA             PF08298.6    358 sp|P0A9M0|LON_ECOLI  -            784   8.3e-06   24.7   0.0   1   1   3.1e-08   1.6e-05   23.8   0.0    51   111   312   372   288   385 0.88 PrkA AAA domain
RuvB_N               PF05496.7    234 sp|P0A9M0|LON_ECOLI  -            784   0.00033   19.7   0.0   1   2   3.4e-05     0.017   14.1   0.0    24    77   322   376   300   393 0.69 Holliday junction DNA helicase ruvB N-terminus
AAA_3                PF07726.6    131 sp|P0A9M0|LON_ECOLI  -            784   0.00065   19.3   0.0   1   1   3.8e-06    0.0019   17.7   0.0     4   114   354   476   351   481 0.78 ATPase family associated with various cellular activities (AAA)
AAA_14               PF13173.1    128 sp|P0A9M0|LON_ECOLI  -            784   0.00085   19.2   0.0   1   1   6.1e-06    0.0031   17.4   0.0     2    73   349   428   348   493 0.76 AAA domain
AAA_17               PF13207.1    121 sp|P0A9M0|LON_ECOLI  -            784    0.0011   19.7   2.3   1   1   4.5e-06    0.0023   18.7   0.1     1    30   351   380   351   463 0.87 AAA domain
IstB_IS21            PF01695.12   178 sp|P0A9M0|LON_ECOLI  -            784    0.0021   17.4   0.0   1   1   1.1e-05    0.0057   16.0   0.0    13    77   313   379   305   449 0.76 IstB-like ATP binding protein
AAA_22               PF13401.1    131 sp|P0A9M0|LON_ECOLI  -            784    0.0041   17.2   0.1   1   1   6.5e-05     0.033   14.3   0.1     5    55   350   392   345   453 0.67 AAA domain
AAA_2                PF07724.9    171 sp|P0A9M0|LON_ECOLI  -            784    0.0093   15.8   0.0   1   1   7.8e-05      0.04   13.8   0.0     8   129   354   474   350   513 0.76 AAA domain (Cdc48 subfamily)
AAA_33               PF13671.1    143 sp|P0A9M0|LON_ECOLI  -            784     0.012   15.4   0.5   1   1   6.4e-05     0.033   14.0   0.0     2    31   352   383   351   411 0.83 AAA domain
AAA_18               PF13238.1    129 sp|P0A9M0|LON_ECOLI  -            784     0.014   15.6   0.1   1   1   2.8e-05     0.014   15.6   0.1     2    28   353   379   352   411 0.87 AAA domain
NACHT                PF05729.7    166 sp|P0A9M0|LON_ECOLI  -            784     0.016   14.8   0.1   1   2    0.0005      0.26   10.9   0.0     3    26   352   375   350   381 0.87 NACHT domain
ClpB_D2-small        PF10431.4     81 sp|P0A9M0|LON_ECOLI  -            784     0.017   14.9   0.7   1   1   0.00013     0.066   13.1   0.7     8    75   500   567   494   571 0.84 C-terminal, D2-small domain, of ClpB protein
AAA_24               PF13479.1    213 sp|P0A9M0|LON_ECOLI  -            784     0.027   14.0   0.4   1   1   0.00037      0.19   11.3   0.3     6    25   352   371   347   373 0.84 AAA domain
AAA_25               PF13481.1    194 sp|P0A9M0|LON_ECOLI  -            784      0.03   13.7   0.0   1   1   0.00021      0.11   11.8   0.0    33    56   349   372   340   388 0.88 AAA domain
TIP49                PF06068.8    398 sp|P0A9M0|LON_ECOLI  -            784     0.034   12.8   4.5   1   2    0.0017      0.88    8.2   0.1    45    78   344   377   337   386 0.87 TIP49 C-terminus
AAA_19               PF13245.1     76 sp|P0A9M0|LON_ECOLI  -            784      0.08   12.7   0.1   1   1   0.00084      0.43   10.3   0.2     6    26   346   365   339   387 0.80 Part of AAA domain
ATP-synt_ab          PF00006.20   215 sp|P0A9M0|LON_ECOLI  -            784     0.084   12.3   0.0   1   1   0.00026      0.13   11.7   0.0    13    47   347   381   338   642 0.88 ATP synthase alpha/beta family, nucleotide-binding domain
DUF258               PF03193.11   161 sp|P0A9M0|LON_ECOLI  -            784      0.11   11.7   0.0   1   1   0.00047      0.24   10.5   0.0    31    59   345   373   322   400 0.80 Protein of unknown function, DUF258
RNA_helicase         PF00910.17   107 sp|P0A9M0|LON_ECOLI  -            784      0.11   12.6   0.0   1   1   0.00088      0.45   10.7   0.0     1    26   352   377   352   435 0.83 RNA helicase
SKI                  PF01202.17   158 sp|P0A9M0|LON_ECOLI  -            784      0.55   10.0   3.1   1   1    0.0015      0.75    9.6   0.1     1    21   358   378   358   380 0.94 Shikimate kinase
His_leader           PF08047.6     16 sp|P60995|LPHI_ECOLI -             16     2e-10   39.8  21.1   1   1   1.4e-14   2.1e-10   39.7  21.1     1    16     1    16     1    16 0.99 Histidine operon leader peptide
Lip_prot_lig_C       PF10437.4     86 sp|P32099|LPLA_ECOLI -            338   2.2e-23   81.7   0.0   2   2   3.5e-26   2.6e-22   78.2   0.0     1    86   248   333   248   333 0.97 Bacterial lipoate protein ligase C-terminus
BPL_LplA_LipB        PF03099.14   125 sp|P32099|LPLA_ECOLI -            338   3.4e-23   82.0   0.0   1   2   1.6e-26   1.2e-22   80.2   0.0     1   125    46   158    46   158 0.94 Biotin/lipoate A/B protein ligase family
MFS_1                PF07690.11   352 sp|P39196|LPLT_ECOLI -            397   1.9e-13   49.8  40.9   1   2   3.9e-17   1.9e-13   49.8  40.9     2   345    20   352    19   358 0.73 Major Facilitator Superfamily
DUF1427              PF07235.6     91 sp|P39196|LPLT_ECOLI -            397       1.1    9.3   5.8   1   1   2.9e-05      0.14   12.2   1.2     8    55   287   334   283   354 0.83 Protein of unknown function (DUF1427)
LppC                 PF04348.8    536 sp|P45464|LPOA_ECOLI -            678    1e-135  453.3  24.5   1   2     5e-52   2.4e-48  164.9  20.3     1   314    40   345    40   352 0.91 LppC putative lipoprotein
LppC                 PF04348.8    536 sp|P45464|LPOA_ECOLI -            678    1e-135  453.3  24.5   2   2   2.2e-90   1.1e-86  291.5   0.2   245   536   346   672   342   672 0.97 LppC putative lipoprotein
TPR_19               PF14559.1     68 sp|P45464|LPOA_ECOLI -            678     0.004   17.4  10.7   1   2   1.7e-05     0.086   13.1   1.2    11    66    48   105    38   107 0.77 Tetratricopeptide repeat
DUF3897              PF13036.1    180 sp|P0AB38|LPOB_ECOLI -            213   8.6e-53  178.6   0.0   1   1   2.1e-56     1e-52  178.3   0.0     1   180    10   210    10   210 0.92 Protein of unknown function (DUF3897)
DUF3280              PF11684.3    140 sp|P0AB38|LPOB_ECOLI -            213     0.053   13.7   0.1   1   1   1.8e-05     0.091   12.9   0.0    31    88   119   180   102   207 0.70 Protein of unknown function (DUF2380)
LPP                  PF04728.8     56 sp|P69776|LPP_ECOLI  -             78   8.4e-36  121.5  13.5   1   1   1.7e-38   9.9e-36  121.3  13.5     1    56    23    78    23    78 0.99 Lipoprotein leucine-zipper
Atg14                PF10186.4    302 sp|P69776|LPP_ECOLI  -             78   0.00048   19.1   0.2   1   1   8.4e-07    0.0005   19.1   0.2    67   118    22    74    11    78 0.89 UV radiation resistance protein and autophagy-related subunit 14
FadA                 PF09403.5    126 sp|P69776|LPP_ECOLI  -             78   0.00082   19.3   0.3   1   1   1.4e-06   0.00083   19.3   0.3     8    68     9    73     1    78 0.73 Adhesion protein FadA
DivIC                PF04977.10    80 sp|P69776|LPP_ECOLI  -             78    0.0023   17.3   0.1   1   1   4.7e-06    0.0028   17.1   0.1     4    53    12    61     6    73 0.63 Septum formation initiator
DUF3359              PF11839.3     96 sp|P69776|LPP_ECOLI  -             78    0.0027   18.0   5.2   1   1   7.6e-06    0.0045   17.2   5.2     3    61     5    72     1    78 0.64 Protein of unknown function (DUF3359)
DUF1664              PF07889.7    126 sp|P69776|LPP_ECOLI  -             78    0.0031   17.3   0.5   1   1   6.8e-06     0.004   16.9   0.5    68   118    25    75    21    78 0.83 Protein of unknown function (DUF1664)
ADIP                 PF11559.3    151 sp|P69776|LPP_ECOLI  -             78    0.0032   17.3   1.1   1   1   6.9e-06    0.0041   17.0   1.1    59   131    25    76    19    78 0.52 Afadin- and alpha -actinin-Binding
TMF_DNA_bd           PF12329.3     74 sp|P69776|LPP_ECOLI  -             78    0.0039   16.9   0.9   1   1   7.8e-06    0.0046   16.7   0.9    12    59    25    72    22    78 0.67 TATA element modulatory factor 1 DNA binding
Cluap1               PF10234.4    267 sp|P69776|LPP_ECOLI  -             78    0.0063   15.7   1.1   1   1   1.3e-05    0.0077   15.4   1.1   169   217    25    73    22    76 0.94 Clusterin-associated protein-1
Tropomyosin_1        PF12718.2    143 sp|P69776|LPP_ECOLI  -             78    0.0074   16.1   0.9   1   1   1.5e-05    0.0088   15.8   0.9    29    75    26    72    22    78 0.81 Tropomyosin like
NPV_P10              PF05531.7     75 sp|P69776|LPP_ECOLI  -             78     0.011   15.9   2.1   1   1   2.6e-05     0.016   15.4   2.1     8    48    29    73    22    78 0.67 Nucleopolyhedrovirus P10 protein
HrpB7                PF09486.5    158 sp|P69776|LPP_ECOLI  -             78     0.013   15.4   1.8   1   1   2.6e-05     0.016   15.1   1.8    19    64    29    74    22    77 0.89 Bacterial type III secretion protein (HrpB7)
DUF16                PF01519.11   102 sp|P69776|LPP_ECOLI  -             78     0.015   15.4   0.0   1   1   2.8e-05     0.017   15.3   0.0    51   100    23    72    10    74 0.92 Protein of unknown function DUF16
DUF3373              PF11853.3    489 sp|P69776|LPP_ECOLI  -             78     0.016   13.8   0.7   1   1   2.6e-05     0.016   13.8   0.7     4    65     3    66     1    77 0.73 Protein of unknown function (DUF3373)
DUF948               PF06103.6     90 sp|P69776|LPP_ECOLI  -             78     0.017   14.9   0.1   1   1   3.3e-05     0.019   14.7   0.1    31    66    23    58     6    76 0.78 Bacterial protein of unknown function (DUF948)
DUF2730              PF10805.3    106 sp|P69776|LPP_ECOLI  -             78     0.024   14.3   0.5   2   2    0.0013      0.78    9.5   0.1    30    59    48    77    46    78 0.91 Protein of unknown function (DUF2730)
COG5                 PF10392.4    132 sp|P69776|LPP_ECOLI  -             78     0.025   14.5   0.1   1   1   4.7e-05     0.028   14.3   0.1    66   113    26    73    14    77 0.78 Golgi transport complex subunit 5
FlaC_arch            PF05377.6     55 sp|P69776|LPP_ECOLI  -             78     0.045   13.6   0.3   1   1   0.00012     0.069   13.0   0.3     8    38    26    56    24    61 0.84 Flagella accessory protein C (FlaC)
MbeD_MobD            PF04899.7     70 sp|P69776|LPP_ECOLI  -             78     0.055   13.3   0.6   1   1   0.00014     0.082   12.8   0.3    48    70    24    46    18    57 0.89 MbeD/MobD like
GvpK                 PF05121.7     89 sp|P69776|LPP_ECOLI  -             78     0.062   13.1   0.1   1   1   0.00014     0.082   12.7   0.1    41    79    20    58    16    72 0.88 Gas vesicle protein K
SlyX                 PF04102.7     69 sp|P69776|LPP_ECOLI  -             78     0.067   13.5   0.9   1   1   0.00014     0.085   13.2   0.9    19    60    26    67    22    76 0.74 SlyX
EMP24_GP25L          PF01105.19   183 sp|P69776|LPP_ECOLI  -             78     0.089   12.5   0.1   1   1   0.00017       0.1   12.3   0.1   112   155    25    68    14    77 0.55 emp24/gp25L/p24 family/GOLD
ABC_tran             PF00005.22   137 sp|P0A9V1|LPTB_ECOLI -            241   4.1e-34  117.8   0.0   1   1   3.5e-37   6.4e-34  117.1   0.0     2   137    20   166    19   166 0.96 ABC transporter
AAA_21               PF13304.1    303 sp|P0A9V1|LPTB_ECOLI -            241   6.7e-08   32.8   0.2   1   2    0.0001      0.19   11.6   0.1     3    24    33    54    31    99 0.75 AAA domain
AAA_21               PF13304.1    303 sp|P0A9V1|LPTB_ECOLI -            241   6.7e-08   32.8   0.2   2   2   4.8e-07   0.00089   19.3   0.0   236   298   137   196   108   201 0.89 AAA domain
BCA_ABC_TP_C         PF12399.3     23 sp|P0A9V1|LPTB_ECOLI -            241   9.5e-08   31.5   0.0   1   1     1e-10   1.9e-07   30.6   0.0     2    23   215   236   214   236 0.97 Branched-chain amino acid ATP-binding cassette transporter
SbcCD_C              PF13558.1     90 sp|P0A9V1|LPTB_ECOLI -            241    0.0083   16.0   0.2   1   1   7.5e-05      0.14   12.0   0.2    27    79   132   171   101   182 0.73 Putative exonuclease SbcCD, C subunit
T2SE                 PF00437.15   272 sp|P0A9V1|LPTB_ECOLI -            241    0.0089   14.9   0.0   1   1     7e-06     0.013   14.4   0.0   124   164    25    65     2    78 0.79 Type II/IV secretion system protein
AAA_23               PF13476.1    202 sp|P0A9V1|LPTB_ECOLI -            241     0.023   15.0   0.0   1   1   2.4e-05     0.045   14.0   0.0    13    36    22    46     4    50 0.76 AAA domain
AAA_29               PF13555.1     62 sp|P0A9V1|LPTB_ECOLI -            241     0.082   12.4   0.0   1   1   7.6e-05      0.14   11.6   0.0    19    40    26    46    17    55 0.81 P-loop containing region of AAA domain
OstA                 PF03968.9    113 sp|P0ADV1|LPTA_ECOLI -            185   9.6e-33  112.5   2.3   1   1   1.8e-36   1.3e-32  112.0   2.3     1   113    37   149    37   149 0.98 OstA-like protein
LptC                 PF06835.8    176 sp|P0ADV1|LPTA_ECOLI -            185   0.00091   18.6   1.4   1   2   3.7e-06     0.028   13.8   0.1    74   118    24    68     1    76 0.84 Lipopolysaccharide-assembly, LptC-related
LptC                 PF06835.8    176 sp|P0ADV9|LPTC_ECOLI -            191   1.3e-53  180.9   2.1   1   1     1e-57   1.5e-53  180.8   2.1     2   176     9   183     8   183 0.97 Lipopolysaccharide-assembly, LptC-related
OstA_C               PF04453.9    388 sp|P31554|LPTD_ECOLI -            784  4.4e-110  368.4  32.2   2   2  8.9e-114  4.4e-110  368.4  32.2     2   388   309   697   308   697 0.99 Organic solvent tolerance protein
OstA                 PF03968.9    113 sp|P31554|LPTD_ECOLI -            784   2.3e-28   98.4   0.0   1   1     1e-31   5.2e-28   97.2   0.0     1   112    53   194    53   195 0.98 OstA-like protein
YfaZ                 PF07437.6    180 sp|P31554|LPTD_ECOLI -            784     0.036   13.5   1.1   1   1   1.8e-05     0.088   12.2   1.1    85   174   672   752   662   758 0.80 YfaZ precursor
LptE                 PF04390.7    155 sp|P0ADC1|LPTE_ECOLI -            193   8.9e-34  116.4   0.0   1   1   7.9e-38   1.2e-33  116.0   0.0     2   153    10   159     9   161 0.94 Lipopolysaccharide-assembly
YjgP_YjgQ            PF03739.9    354 sp|P0ADC6|LPTG_ECOLI -            360   9.6e-69  231.7   5.4   1   1     3e-72   1.1e-68  231.5   5.4     1   354     9   358     9   358 0.98 Predicted permease YjgP/YjgQ family
FtsX                 PF02687.16   121 sp|P0ADC6|LPTG_ECOLI -            360    0.0049   16.6   1.1   2   2   1.3e-06    0.0049   16.6   1.1    13    76    72   135    64   160 0.85 FtsX-like permease family
DUF2523              PF10734.4     83 sp|P0ADC6|LPTG_ECOLI -            360     0.014   15.5   1.7   1   2   3.9e-06     0.014   15.5   1.7     6    60     6    60     3    83 0.87 Protein of unknown function (DUF2523)
DUF4012              PF13196.1    144 sp|P0ADC6|LPTG_ECOLI -            360     0.056   13.6   0.0   1   1   2.7e-05       0.1   12.7   0.0    34   113   173   250   169   251 0.82 Protein of unknown function (DUF4012)
YjgP_YjgQ            PF03739.9    354 sp|P0AF98|LPTF_ECOLI -            366   2.9e-70  236.7   6.1   1   1   2.3e-74   3.5e-70  236.5   6.1     1   351     5   345     5   348 0.97 Predicted permease YjgP/YjgQ family
Leader_Thr           PF08254.6     22 sp|P0AD86|LPT_ECOLI  -             21   1.2e-09   37.3  14.8   1   1   8.3e-14   1.2e-09   37.2  14.8     1    22     1    21     1    21 0.99 Threonine leader peptide
Acetyltransf_11      PF13720.1     83 sp|P0A722|LPXA_ECOLI -            262   2.6e-30  104.4   0.0   1   1   8.5e-34   4.2e-30  103.8   0.0     1    83   180   262   180   262 0.98 Udp N-acetylglucosamine O-acyltransferase; Domain 2
Hexapep              PF00132.19    36 sp|P0A722|LPXA_ECOLI -            262   5.5e-30  101.5  21.3   1   6   5.4e-09   2.7e-05   23.4   0.5     4    35     2    33     1    34 0.91 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0A722|LPXA_ECOLI -            262   5.5e-30  101.5  21.3   2   6   8.2e-13     4e-09   35.5   4.8     1    36    17    52    17    52 0.96 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0A722|LPXA_ECOLI -            262   5.5e-30  101.5  21.3   3   6   2.2e-07    0.0011   18.3   1.6     1    35    35    69    35    69 0.92 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0A722|LPXA_ECOLI -            262   5.5e-30  101.5  21.3   4   6   4.6e-07    0.0023   17.3   0.0     2    35    66    99    65   100 0.95 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0A722|LPXA_ECOLI -            262   5.5e-30  101.5  21.3   5   6   2.8e-13   1.4e-09   37.0   0.1     2    36   109   143   108   143 0.96 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0A722|LPXA_ECOLI -            262   5.5e-30  101.5  21.3   6   6   2.5e-06     0.013   15.0   2.9     2    35   145   178   144   179 0.91 Bacterial transferase hexapeptide (six repeats)
Hexapep_2            PF14602.1     34 sp|P0A722|LPXA_ECOLI -            262   0.00035   20.0  15.6   1   4   3.8e-07    0.0019   17.7   1.8     2    32    18    50    17    52 0.89 Hexapeptide repeat of succinyl-transferase
LpxB                 PF02684.10   373 sp|P10441|LPXB_ECOLI -            382  4.8e-154  512.5   0.0   1   1  3.6e-158  5.4e-154  512.3   0.0     1   373     9   377     9   377 1.00 Lipid-A-disaccharide synthetase
LpxC                 PF03331.8    277 sp|P0A725|LPXC_ECOLI -            305  6.3e-125  415.6   0.0   1   1    1e-128  7.6e-125  415.4   0.0     1   277     2   280     2   280 0.99 UDP-3-O-acyl N-acetylglycosamine deacetylase
Peptidase_S31        PF05578.7    211 sp|P0A725|LPXC_ECOLI -            305     0.031   13.4   0.0   1   1   6.4e-06     0.047   12.8   0.0    24    77    33    87    18    96 0.85 Pestivirus NS3 polyprotein peptidase S31
Hexapep              PF00132.19    36 sp|P21645|LPXD_ECOLI -            341   4.7e-32  108.0  41.1   1   6   2.5e-14   9.2e-11   40.7   3.7     2    36   110   144   109   144 0.95 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P21645|LPXD_ECOLI -            341   4.7e-32  108.0  41.1   2   6   3.4e-12   1.3e-08   33.9   0.4     1    35   145   179   145   180 0.96 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P21645|LPXD_ECOLI -            341   4.7e-32  108.0  41.1   3   6   3.1e-06     0.011   15.1   0.4    18    35   199   216   197   217 0.91 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P21645|LPXD_ECOLI -            341   4.7e-32  108.0  41.1   4   6   8.5e-11   3.1e-07   29.5   9.3     1    35   222   256   222   257 0.94 Bacterial transferase hexapeptide (six repeats)
LpxD                 PF04613.9     72 sp|P21645|LPXD_ECOLI -            341   2.1e-23   81.6   0.0   1   1   9.3e-27   3.5e-23   80.9   0.0     1    72    21    90    21    90 0.97 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
Hexapep_2            PF14602.1     34 sp|P21645|LPXD_ECOLI -            341   1.5e-13   50.0  44.2   1   5   6.2e-12   2.3e-08   33.4   8.1     3    33   111   143   110   144 0.93 Hexapeptide repeat of succinyl-transferase
Hexapep_2            PF14602.1     34 sp|P21645|LPXD_ECOLI -            341   1.5e-13   50.0  44.2   2   5   3.9e-06     0.014   14.9   1.1     3    34   147   180   140   180 0.72 Hexapeptide repeat of succinyl-transferase
Hexapep_2            PF14602.1     34 sp|P21645|LPXD_ECOLI -            341   1.5e-13   50.0  44.2   5   5   7.8e-05      0.29   10.7   0.3     2    26   259   285   258   290 0.91 Hexapeptide repeat of succinyl-transferase
HSBP1                PF06825.7     54 sp|P21645|LPXD_ECOLI -            341    0.0062   16.0   0.1   1   1   3.2e-06     0.012   15.2   0.1    26    45   319   338   316   340 0.89 Heat shock factor binding protein 1
Metallophos_2        PF12850.2    156 sp|P43341|LPXH_ECOLI -            240   4.2e-13   49.4   0.0   1   1     1e-16   7.5e-13   48.6   0.0     1   125     1   203     1   221 0.81 Calcineurin-like phosphoesterase superfamily domain
Metallophos          PF00149.23   200 sp|P43341|LPXH_ECOLI -            240   5.5e-13   48.7   0.0   1   1   4.3e-16   3.2e-12   46.2   0.0     3   200     3   199     1   199 0.96 Calcineurin-like phosphoesterase
LpxK                 PF02606.9    326 sp|P27300|LPXK_ECOLI -            328  8.5e-111  370.0   0.0   1   1  6.9e-115    1e-110  369.7   0.0     2   322    13   318    12   323 0.95 Tetraacyldisaccharide-1-P 4'-kinase
Lip_A_acyltrans      PF03279.8    295 sp|P0ACV0|LPXL_ECOLI -            306  4.6e-117  390.0   0.0   1   1  3.5e-121  5.2e-117  389.9   0.0     2   295     5   297     4   297 0.99 Bacterial lipid A biosynthesis acyltransferase
PAP2                 PF01569.16   129 sp|P76445|LPXT_ECOLI -            237   5.9e-17   61.5   4.6   2   2   1.2e-20   5.9e-17   61.5   4.6     4   122    94   215    90   221 0.89 PAP2 superfamily
PAP2_C               PF14360.1     74 sp|P76445|LPXT_ECOLI -            237     0.015   15.5   2.2   2   2     3e-06     0.015   15.5   2.2    10    68   150   205   145   210 0.91 PAP2 superfamily C-terminal
PAP2_3               PF14378.1    191 sp|P76445|LPXT_ECOLI -            237      0.11   11.9   7.3   2   2     2e-05     0.097   12.1   5.2   103   187   132   204    67   207 0.70 PAP2 superfamily
Lip_A_acyltrans      PF03279.8    295 sp|P0ACV2|LPXP_ECOLI -            306  3.8e-113  377.2   0.3   1   1  2.9e-117  4.2e-113  377.0   0.3     2   295     5   296     4   296 0.99 Bacterial lipid A biosynthesis acyltransferase
Lip_A_acyltrans      PF03279.8    295 sp|P24205|LPXM_ECOLI -            323  4.9e-113  376.8   0.0   1   1  3.7e-117  5.5e-113  376.7   0.0     2   295    12   305    11   305 1.00 Bacterial lipid A biosynthesis acyltransferase
Peptidase_A8         PF01252.13   152 sp|P00804|LSPA_ECOLI -            164     3e-45  153.5   6.7   1   1   7.1e-49   3.5e-45  153.3   6.7     2   148    15   160    13   164 0.93 Signal peptidase (SPase) II
DUF1212              PF06738.7    193 sp|P00804|LSPA_ECOLI -            164     0.024   14.1   2.8   1   1   6.7e-06     0.033   13.6   2.8   114   171    55   113    48   155 0.83 Protein of unknown function (DUF1212)
DUF2919              PF11143.3    149 sp|P00804|LSPA_ECOLI -            164      0.24   11.2   4.0   2   2   3.7e-05      0.19   11.5   0.6    56   131    71   149    68   155 0.65 Protein of unknown function (DUF2919)
ABC_tran             PF00005.22   137 sp|P77257|LSRA_ECOLI -            511   1.8e-51  174.0   0.1   1   2   3.1e-30   2.7e-27   95.7   0.0     1   137    27   169    27   169 0.95 ABC transporter
ABC_tran             PF00005.22   137 sp|P77257|LSRA_ECOLI -            511   1.8e-51  174.0   0.1   2   2   2.9e-24   2.5e-21   76.3   0.0     2   136   280   431   279   432 0.89 ABC transporter
AAA_21               PF13304.1    303 sp|P77257|LSRA_ECOLI -            511     3e-13   50.3   0.2   1   3   1.7e-06    0.0015   18.5   0.0     2    23    40    61    39   109 0.83 AAA domain
AAA_21               PF13304.1    303 sp|P77257|LSRA_ECOLI -            511     3e-13   50.3   0.2   2   3    0.0001     0.087   12.7   0.1   256   297   157   198   146   203 0.86 AAA domain
AAA_21               PF13304.1    303 sp|P77257|LSRA_ECOLI -            511     3e-13   50.3   0.2   3   3   1.2e-05      0.01   15.8   0.0   224   294   391   458   324   461 0.83 AAA domain
AAA_29               PF13555.1     62 sp|P77257|LSRA_ECOLI -            511   0.00073   19.0   0.1   1   1   2.3e-06     0.002   17.6   0.1    16    40    31    54    25    64 0.83 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|P77257|LSRA_ECOLI -            511   0.00091   18.4   0.3   1   2    0.0001     0.088   11.9   0.0    26    57    27    59    12    77 0.81 Protein of unknown function, DUF258
UPF0079              PF02367.12   123 sp|P77257|LSRA_ECOLI -            511    0.0017   17.9   4.5   2   3    0.0011      0.96    9.0   0.3     8    35   282   309   278   315 0.88 Uncharacterised P-loop hydrolase UPF0079
AAA_22               PF13401.1    131 sp|P77257|LSRA_ECOLI -            511    0.0036   17.4   4.7   1   2   0.00025      0.22   11.6   0.7     8   123    41   197    34   206 0.66 AAA domain
AAA_23               PF13476.1    202 sp|P77257|LSRA_ECOLI -            511     0.012   15.9   0.1   1   1   3.6e-05     0.032   14.5   0.1    15    40    30    58    19    78 0.80 AAA domain
DUF3954              PF13128.1     50 sp|P77257|LSRA_ECOLI -            511      0.12   11.8   0.0   1   1   0.00038      0.33   10.3   0.0     3    21   464   482   463   485 0.93 Protein of unknown function (DUF3954)
Peripla_BP_4         PF13407.1    257 sp|P76142|LSRB_ECOLI -            340     3e-53  180.8   4.4   1   1     1e-56   3.8e-53  180.4   4.4     1   255    30   285    30   287 0.95 Periplasmic binding protein domain
Peripla_BP_6         PF13458.1    343 sp|P76142|LSRB_ECOLI -            340   1.4e-06   27.8   5.2   1   3   1.8e-05     0.065   12.5   0.1   149   216    43   111    13   116 0.91 Periplasmic binding protein
Peripla_BP_6         PF13458.1    343 sp|P76142|LSRB_ECOLI -            340   1.4e-06   27.8   5.2   2   3   2.9e-06     0.011   15.1   0.4    61   181    77   199    74   206 0.74 Periplasmic binding protein
Peripla_BP_6         PF13458.1    343 sp|P76142|LSRB_ECOLI -            340   1.4e-06   27.8   5.2   3   3   3.3e-05      0.12   11.6   0.2    24    90   193   256   189   270 0.81 Periplasmic binding protein
Glyco_tran_WecB      PF03808.8    172 sp|P76142|LSRB_ECOLI -            340     0.022   14.1   0.1   1   2   2.5e-05     0.092   12.1   0.0    56   101   166   211   135   218 0.76 Glycosyl transferase WecB/TagA/CpsF family
BPD_transp_2         PF02653.11   267 sp|P77672|LSRC_ECOLI -            342   3.3e-45  154.1  43.2   1   1   3.1e-49   4.6e-45  153.6  43.2     5   267    40   301    36   301 0.96 Branched-chain amino acid transport system / permease component
BPD_transp_2         PF02653.11   267 sp|P0AFS1|LSRD_ECOLI -            330   5.1e-47  160.0  43.0   1   1   1.3e-50   6.3e-47  159.7  43.0     3   267    36   305    34   305 0.94 Branched-chain amino acid transport system / permease component
PspB                 PF06667.7     75 sp|P0AFS1|LSRD_ECOLI -            330    0.0058   16.5   1.1   1   1   2.4e-06     0.012   15.5   1.1     6    27   163   184   158   201 0.86 Phage shock protein B
DeoC                 PF01791.4    236 sp|P76143|LSRF_ECOLI -            291   2.3e-16   59.8   0.1   1   1     4e-20   2.9e-16   59.4   0.1     1   235    51   258    51   259 0.90 DeoC/LacD family aldolase
ThiG                 PF05690.9    247 sp|P76143|LSRF_ECOLI -            291    0.0048   16.0   1.8   2   2   5.4e-06      0.04   12.9   0.1   166   233   210   282   187   290 0.81 Thiazole biosynthesis protein ThiG
ABM                  PF03992.11    78 sp|P64461|LSRG_ECOLI -             96   4.5e-16   58.6   0.1   1   1   3.4e-20     5e-16   58.4   0.1     1    77     1    76     1    77 0.95 Antibiotic biosynthesis monooxygenase
FGGY_N               PF00370.16   245 sp|P77432|LSRK_ECOLI -            530   1.2e-51  175.4   0.0   1   1   3.8e-55   2.9e-51  174.1   0.0     1   245    13   260    13   260 0.94 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C               PF02782.11   198 sp|P77432|LSRK_ECOLI -            530   1.5e-19   70.3   0.0   1   1     4e-23   2.9e-19   69.4   0.0    31   197   298   467   270   468 0.84 FGGY family of carbohydrate kinases, C-terminal domain
Sugar-bind           PF04198.8    255 sp|P76141|LSRR_ECOLI -            317   3.2e-72  242.4   1.9   1   1     3e-75   4.4e-72  242.0   1.9     2   255    67   316    66   316 0.97 Putative sugar-binding domain
Sigma70_r4           PF04545.11    50 sp|P76141|LSRR_ECOLI -            317   0.00023   20.4   0.0   1   1   4.5e-07   0.00067   18.9   0.0    16    44    26    54    21    56 0.91 Sigma-70, region 4
MarR_2               PF12802.2     62 sp|P76141|LSRR_ECOLI -            317   0.00065   19.3   0.1   1   1   1.3e-06    0.0019   17.8   0.0    16    54    27    63    17    67 0.88 MarR family
HTH_24               PF13412.1     48 sp|P76141|LSRR_ECOLI -            317    0.0026   17.1   0.0   1   1   4.8e-06    0.0071   15.7   0.0    16    40    29    53    25    61 0.84 Winged helix-turn-helix DNA-binding
HTH_Crp_2            PF13545.1     76 sp|P76141|LSRR_ECOLI -            317     0.006   16.3   0.0   1   1   1.1e-05     0.017   14.9   0.0    27    60    29    62    18    69 0.91 Crp-like helix-turn-helix domain
HTH_37               PF13744.1     80 sp|P76141|LSRR_ECOLI -            317    0.0062   16.3   0.0   1   1     1e-05     0.015   15.0   0.0    19    53    18    52    16    59 0.88 Helix-turn-helix domain
HTH_23               PF13384.1     50 sp|P76141|LSRR_ECOLI -            317    0.0095   15.5   0.0   1   1   2.6e-05     0.039   13.6   0.0     5    39    17    52    14    55 0.83 Homeodomain-like domain
HTH_CodY             PF08222.6     61 sp|P76141|LSRR_ECOLI -            317     0.016   14.5   0.0   1   2   0.00011      0.16   11.3   0.0     5    35    31    61    28    68 0.91 CodY helix-turn-helix domain
MarR                 PF01047.17    59 sp|P76141|LSRR_ECOLI -            317     0.027   14.1   0.0   1   1   3.6e-05     0.054   13.2   0.0    10    50    23    63    15    67 0.83 MarR family
HTH_IclR             PF09339.5     52 sp|P76141|LSRR_ECOLI -            317     0.085   12.4   0.0   1   1   0.00019      0.28   10.7   0.0    17    40    29    52    24    53 0.91 IclR helix-turn-helix domain
Beta_elim_lyase      PF01212.16   290 sp|P75823|LTAE_ECOLI -            333   4.2e-92  308.3   0.1   1   1   1.5e-95   5.4e-92  308.0   0.1     1   285     3   280     3   285 0.97 Beta-eliminating lyase
Aminotran_1_2        PF00155.16   363 sp|P75823|LTAE_ECOLI -            333   7.6e-09   34.9   0.0   1   1   3.5e-12   1.3e-08   34.1   0.0    38   327    28   303     4   325 0.77 Aminotransferase class I and II
Cys_Met_Meta_PP      PF01053.15   386 sp|P75823|LTAE_ECOLI -            333   9.2e-05   20.8   0.0   1   1   6.1e-08   0.00023   19.6   0.0    54   272    33   264    29   273 0.64 Cys/Met metabolism PLP-dependent enzyme
DegT_DnrJ_EryC1      PF01041.12   363 sp|P75823|LTAE_ECOLI -            333    0.0048   15.9   0.4   1   2     2e-05     0.073   12.1   0.0    19    72    28    80    11   124 0.66 DegT/DnrJ/EryC1/StrS aminotransferase family
LuxS                 PF02664.10   157 sp|P45578|LUXS_ECOLI -            171   3.9e-77  257.2   0.0   1   1     3e-81   4.4e-77  257.0   0.0     2   156     3   161     2   162 0.98 S-Ribosylhomocysteinase (LuxS)
Phage_lysozyme       PF00959.14   110 sp|P78285|LYSD_ECOLI -            165   3.3e-32  111.0   0.3   1   1   2.8e-36   4.1e-32  110.7   0.3     1   109    48   154    48   155 0.98 Phage lysozyme
AA_permease          PF00324.16   478 sp|P25737|LYSP_ECOLI -            489  4.3e-144  480.4  42.7   1   1  9.7e-148  4.8e-144  480.2  42.7     1   474    21   476    21   480 0.98 Amino acid permease
AA_permease_2        PF13520.1    426 sp|P25737|LYSP_ECOLI -            489   6.9e-42  143.4  51.5   1   1   2.8e-45   1.4e-41  142.4  51.2     4   404    20   435    17   467 0.79 Amino acid permease
Phage_lysozyme       PF00959.14   110 sp|P76159|LYSQ_ECOLI -            177   9.7e-32  109.5   0.0   1   1   1.7e-35   1.3e-31  109.1   0.0     1   110    48   166    48   166 0.98 Phage lysozyme
DUF951               PF06107.6     57 sp|P76159|LYSQ_ECOLI -            177      0.71    9.4   3.0   2   2   8.7e-05      0.65    9.5   1.2    15    41   135   161   132   168 0.90 Bacterial protein of unknown function (DUF951)
FGGY_N               PF00370.16   245 sp|P37677|LYXK_ECOLI -            498   1.2e-91  306.4   0.0   1   1   2.1e-95   1.5e-91  306.0   0.0     1   245     4   250     4   250 0.99 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C               PF02782.11   198 sp|P37677|LYXK_ECOLI -            498   1.6e-22   80.1   0.3   2   2   1.4e-25     1e-21   77.4   0.3     3   197   261   441   259   442 0.80 FGGY family of carbohydrate kinases, C-terminal domain
Mac                  PF12464.3     55 sp|P77791|MAA_ECOLI  -            183   1.2e-18   66.8   0.4   1   1   5.5e-22     2e-18   66.1   0.4     1    54     5    58     5    59 0.97 Maltose acetyltransferase
Hexapep_2            PF14602.1     34 sp|P77791|MAA_ECOLI  -            183     2e-15   56.0  12.7   1   3   2.6e-06    0.0095   15.4   0.1    16    33    92   109    85   110 0.87 Hexapeptide repeat of succinyl-transferase
Hexapep_2            PF14602.1     34 sp|P77791|MAA_ECOLI  -            183     2e-15   56.0  12.7   2   3   2.6e-15   9.6e-12   44.2   4.8     1    34   129   164   129   164 0.98 Hexapeptide repeat of succinyl-transferase
Hexapep              PF00132.19    36 sp|P77791|MAA_ECOLI  -            183   2.4e-14   52.1  16.3   1   3     1e-05     0.038   13.4   0.1    20    34    94   108    91   111 0.61 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P77791|MAA_ECOLI  -            183   2.4e-14   52.1  16.3   2   3   4.6e-15   1.7e-11   43.0   7.6     2    36   130   164   129   164 0.96 Bacterial transferase hexapeptide (six repeats)
nec1                 PF10379.4    184 sp|P77791|MAA_ECOLI  -            183     0.019   14.2   0.0   1   1   9.7e-06     0.036   13.3   0.0    96   155    12    73     6    88 0.86 Virulence protein nec1
HlyD_2               PF12700.2    328 sp|P75830|MACA_ECOLI -            371     6e-34  117.6   3.8   1   1   4.9e-37   7.3e-34  117.3   3.8     1   328    40   362    40   362 0.88 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P75830|MACA_ECOLI -            371   3.4e-15   56.2   6.5   2   2   7.1e-17     1e-13   51.4   0.2     1    97   185   285   185   305 0.87 HlyD family secretion protein
HlyD                 PF00529.15   305 sp|P75830|MACA_ECOLI -            371   1.2e-12   47.8  24.3   1   2   1.7e-15   2.5e-12   46.7  24.3     2   166    62   233    61   243 0.91 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P75830|MACA_ECOLI -            371   0.00011   21.7   7.0   1   2   7.7e-08   0.00011   21.7   7.0     3    49    62   108    60   140 0.95 Biotin-lipoyl like
Biotin_lipoyl        PF00364.17    74 sp|P75830|MACA_ECOLI -            371   0.00022   20.8   0.9   1   2   0.00011      0.16   11.6   0.3    45    74    63    92    60   106 0.71 Biotin-requiring enzyme
MacB_PCD             PF12704.2    232 sp|P75831|MACB_ECOLI -            648   1.8e-54  184.7   3.1   1   2   3.3e-57   1.8e-54  184.7   3.1     1   231   261   491   261   492 0.94 MacB-like periplasmic core domain
ABC_tran             PF00005.22   137 sp|P75831|MACB_ECOLI -            648     2e-31  109.1   0.0   1   1   6.5e-34   3.6e-31  108.3   0.0     1   136    24   172    24   173 0.89 ABC transporter
FtsX                 PF02687.16   121 sp|P75831|MACB_ECOLI -            648   2.6e-21   75.6  10.3   2   2   4.8e-24   2.6e-21   75.6  10.3     2   121   527   641   526   641 0.97 FtsX-like permease family
AAA_21               PF13304.1    303 sp|P75831|MACB_ECOLI -            648   7.3e-12   45.8   0.1   1   2   2.8e-05     0.015   15.2   0.3     2    22    37    57    36    67 0.88 AAA domain
AAA_21               PF13304.1    303 sp|P75831|MACB_ECOLI -            648   7.3e-12   45.8   0.1   2   2   3.4e-09   1.9e-06   28.0   0.0   220   300   128   205    85   208 0.88 AAA domain
SMC_N                PF02463.14   220 sp|P75831|MACB_ECOLI -            648   3.2e-06   26.5   0.4   1   1   4.1e-07   0.00022   20.5   0.4    25   212    35   217    27   222 0.71 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P75831|MACB_ECOLI -            648   0.00037   19.9   0.1   1   1   1.6e-06   0.00088   18.7   0.1    22    40    33    51    23    56 0.84 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|P75831|MACB_ECOLI -            648   0.00044   20.2   0.2   1   1   1.7e-06   0.00093   19.2   0.2    24   120    34   170    18   216 0.51 AAA ATPase domain
AAA_33               PF13671.1    143 sp|P75831|MACB_ECOLI -            648    0.0005   19.9   0.0   1   1   2.9e-06    0.0016   18.3   0.0     1   112    36   207    36   220 0.69 AAA domain
AAA_10               PF12846.2    304 sp|P75831|MACB_ECOLI -            648    0.0005   19.5   0.1   1   1   4.4e-06    0.0024   17.3   0.0     4    32    37    67    35    89 0.80 AAA-like domain
DUF258               PF03193.11   161 sp|P75831|MACB_ECOLI -            648    0.0022   17.2   0.6   1   1   7.8e-06    0.0043   16.2   0.1    34    56    33    55    17    74 0.82 Protein of unknown function, DUF258
AAA_22               PF13401.1    131 sp|P75831|MACB_ECOLI -            648    0.0023   18.0   0.7   1   1     5e-05     0.027   14.5   0.7     5   122    35   201    31   209 0.71 AAA domain
AAA_17               PF13207.1    121 sp|P75831|MACB_ECOLI -            648    0.0032   18.2   0.6   1   1   2.4e-05     0.013   16.3   0.6     2    19    37    54    36   138 0.83 AAA domain
AAA_25               PF13481.1    194 sp|P75831|MACB_ECOLI -            648    0.0035   16.7   0.1   1   1     4e-05     0.022   14.1   0.0    29    58    30    58     9   132 0.77 AAA domain
HAD                  PF12710.2    192 sp|P75831|MACB_ECOLI -            648    0.0083   16.3   0.1   1   1   8.4e-05     0.046   13.8   0.1    70   121   125   210    74   342 0.77 haloacid dehalogenase-like hydrolase
FtsK_SpoIIIE         PF01580.13   205 sp|P75831|MACB_ECOLI -            648    0.0086   15.5   0.0   1   1   3.4e-05     0.019   14.4   0.0    31    58    27    54    13    85 0.80 FtsK/SpoIIIE family
MMR_HSR1             PF01926.18   116 sp|P75831|MACB_ECOLI -            648      0.01   15.8   0.1   1   1     5e-05     0.028   14.3   0.1     2    20    37    55    36   228 0.81 50S ribosome-binding GTPase
MobB                 PF03205.9    140 sp|P75831|MACB_ECOLI -            648      0.02   14.5   0.3   1   1   8.7e-05     0.048   13.3   0.1     2    31    36    67    35    74 0.78 Molybdopterin guanine dinucleotide synthesis protein B
AAA_30               PF13604.1    196 sp|P75831|MACB_ECOLI -            648     0.027   14.0   0.7   1   2   0.00073       0.4   10.2   0.0    19    51    35    69    17   109 0.76 AAA domain
AAA_28               PF13521.1    163 sp|P75831|MACB_ECOLI -            648     0.033   14.1   0.0   1   1   0.00017     0.094   12.6   0.0     2    26    37    67    36   111 0.74 AAA domain
AAA_18               PF13238.1    129 sp|P75831|MACB_ECOLI -            648     0.063   13.5   0.0   1   1   0.00028      0.15   12.3   0.0     1    18    37    54    37   143 0.80 AAA domain
DUF87                PF01935.12   229 sp|P75831|MACB_ECOLI -            648     0.083   12.6   0.1   1   1   0.00031      0.17   11.6   0.1    24    43    35    54    20    56 0.83 Domain of unknown function DUF87
Mlf1IP               PF10248.4    176 sp|P75831|MACB_ECOLI -            648     0.086   12.4   0.1   1   1   0.00031      0.17   11.4   0.1   119   140   176   197   171   212 0.88 Myelodysplasia-myeloid leukemia factor 1-interacting protein
AAA_23               PF13476.1    202 sp|P75831|MACB_ECOLI -            648      0.11   12.7   0.0   1   1   0.00038      0.21   11.9   0.0    19    37    34    52     6    88 0.84 AAA domain
Glyco_transf_28      PF03033.15   139 sp|P75831|MACB_ECOLI -            648       0.2   11.4   1.8   1   1   0.00057      0.31   10.7   0.1    16   110   184   298   181   304 0.65 Glycosyltransferase family 28 N-terminal domain
DUF4396              PF14342.1    139 sp|P75831|MACB_ECOLI -            648       5.4    7.1   9.8   1   1   0.00017     0.094   12.8   0.6     7    72   574   645   569   647 0.80 Domain of unknown function (DUF4396)
ROK                  PF00480.15   179 sp|P23917|MAK_ECOLI  -            302   9.3e-59  198.2   0.2   1   1   3.9e-62   1.2e-58  197.9   0.2     1   179     4   193     4   193 0.96 ROK family
Glucokinase          PF02685.11   316 sp|P23917|MAK_ECOLI  -            302   4.2e-10   38.9   0.0   1   1   2.5e-13   7.4e-10   38.1   0.0     4   236     6   238     3   256 0.82 Glucokinase
BcrAD_BadFG          PF01869.15   271 sp|P23917|MAK_ECOLI  -            302   0.00011   21.5   0.6   1   2     1e-05     0.031   13.5   0.3     1    52     3    54     3   157 0.67 BadF/BadG/BcrA/BcrD ATPase family
Hydant_A_N           PF05378.8    176 sp|P23917|MAK_ECOLI  -            302   0.00015   21.3   0.2   1   1   9.6e-08   0.00028   20.4   0.2     1    60     2    60     2    64 0.83 Hydantoinase/oxoprolinase N-terminal region
DEDD_Tnp_IS110       PF01548.12   144 sp|P23917|MAK_ECOLI  -            302     0.023   14.3   0.0   1   1   1.3e-05     0.039   13.6   0.0     2    54     3    53     2    61 0.88 Transposase
SBP_bac_1            PF01547.20   315 sp|P0AEX9|MALE_ECOLI -            396   1.1e-42  146.9  15.1   1   1     4e-46   1.5e-42  146.4  15.1     9   313    45   315    37   317 0.91 Bacterial extracellular solute-binding protein
SBP_bac_8            PF13416.1    281 sp|P0AEX9|MALE_ECOLI -            396   2.5e-41  142.2  11.4   2   2   8.3e-45   3.1e-41  141.9  10.7     2   280    49   344    48   345 0.84 Bacterial extracellular solute-binding protein
SBP_bac_6            PF13343.1    242 sp|P0AEX9|MALE_ECOLI -            396   1.4e-06   27.7   3.5   1   1   1.5e-09   5.5e-06   25.8   3.5     4   215    83   325    80   345 0.71 Bacterial extracellular solute-binding protein
DUF4179              PF13786.1     94 sp|P0AEX9|MALE_ECOLI -            396      0.12   12.5   0.2   1   1   7.9e-05      0.29   11.3   0.2     9    75     5    64     1    65 0.74 Domain of unknown function (DUF4179)
MalF_P2              PF14785.1    164 sp|P02916|MALF_ECOLI -            514   1.9e-62  209.9   0.3   1   1   4.9e-66   2.4e-62  209.6   0.3     1   164   100   260   100   260 0.99 Maltose transport system permease protein MalF P2 domain
BPD_transp_1         PF00528.17   185 sp|P02916|MALF_ECOLI -            514   5.4e-22   78.1  16.2   3   3   1.1e-25   5.4e-22   78.1  16.2     4   171   298   501   295   508 0.83 Binding-protein-dependent transport system inner membrane component
DUF4534              PF15049.1    163 sp|P02916|MALF_ECOLI -            514      0.61    9.6   5.3   1   1   2.9e-05      0.14   11.7   1.9    49   119   279   350   263   358 0.87 Protein of unknown function (DUF4534)
BPD_transp_1         PF00528.17   185 sp|P68183|MALG_ECOLI -            296   1.7e-15   56.9  16.5   2   2   2.3e-19   1.7e-15   56.9  16.5    10   181   111   287    97   291 0.82 Binding-protein-dependent transport system inner membrane component
OATP                 PF03137.15   539 sp|P68183|MALG_ECOLI -            296     0.042   11.8   0.2   1   1   1.1e-05      0.08   10.9   0.2   452   493   212   251   196   254 0.90 Organic Anion Transporter Polypeptide (OATP) family
ABC_tran             PF00005.22   137 sp|P68187|MALK_ECOLI -            371   1.3e-32  112.9   0.0   1   1   4.5e-35   2.4e-32  112.1   0.0     2   136    20   161    19   162 0.89 ABC transporter
TOBE_2               PF08402.5     75 sp|P68187|MALK_ECOLI -            371   8.7e-12   44.8   0.3   2   2   7.6e-14     4e-11   42.7   0.1     1    75   283   355   283   355 0.95 TOBE domain
AAA_21               PF13304.1    303 sp|P68187|MALK_ECOLI -            371   6.5e-08   32.8   0.0   1   2   3.9e-06     0.002   18.1   0.0     1    26    31    54    31    73 0.77 AAA domain
AAA_21               PF13304.1    303 sp|P68187|MALK_ECOLI -            371   6.5e-08   32.8   0.0   2   2   0.00016     0.082   12.8   0.0   234   299   131   194   100   198 0.85 AAA domain
TOBE                 PF03459.12    64 sp|P68187|MALK_ECOLI -            371   2.9e-07   30.5   0.2   1   2   6.4e-05     0.034   14.2   0.0     1    62   236   290   236   292 0.90 TOBE domain
TOBE                 PF03459.12    64 sp|P68187|MALK_ECOLI -            371   2.9e-07   30.5   0.2   2   2   0.00012     0.064   13.3   0.1     6    29   299   322   296   353 0.92 TOBE domain
DUF258               PF03193.11   161 sp|P68187|MALK_ECOLI -            371   9.2e-05   21.6   0.0   1   1   3.2e-07   0.00017   20.8   0.0    28    62    21    56     2   121 0.82 Protein of unknown function, DUF258
SMC_N                PF02463.14   220 sp|P68187|MALK_ECOLI -            371   0.00018   20.7   0.2   1   1   3.6e-06    0.0019   17.4   0.2    21   207    25   203    17   212 0.68 RecF/RecN/SMC N terminal domain
AAA_33               PF13671.1    143 sp|P68187|MALK_ECOLI -            371   0.00025   20.9   0.0   1   1     9e-07   0.00048   20.0   0.0     2    42    32    70    31   193 0.78 AAA domain
AAA_16               PF13191.1    185 sp|P68187|MALK_ECOLI -            371   0.00035   20.6   0.3   1   1   3.3e-06    0.0017   18.3   0.0    21    44    26    49     7    61 0.90 AAA ATPase domain
AAA_29               PF13555.1     62 sp|P68187|MALK_ECOLI -            371   0.00095   18.6   0.0   1   1   3.3e-06    0.0018   17.7   0.0     9    40    13    46     1    52 0.76 P-loop containing region of AAA domain
AAA_25               PF13481.1    194 sp|P68187|MALK_ECOLI -            371    0.0037   16.6   0.1   1   1     2e-05     0.011   15.2   0.0    31    64    27    62    18    80 0.73 AAA domain
AAA_23               PF13476.1    202 sp|P68187|MALK_ECOLI -            371    0.0039   17.5   0.0   1   1   1.1e-05    0.0059   16.9   0.0    11    39    20    49     3    54 0.76 AAA domain
AAA_22               PF13401.1    131 sp|P68187|MALK_ECOLI -            371     0.004   17.2   0.0   1   1   2.2e-05     0.012   15.8   0.0     3    25    28    50    25    64 0.89 AAA domain
AAA_17               PF13207.1    121 sp|P68187|MALK_ECOLI -            371     0.005   17.6   0.0   1   1   2.2e-05     0.012   16.4   0.0     2    32    32    59    31   132 0.82 AAA domain
AAA_10               PF12846.2    304 sp|P68187|MALK_ECOLI -            371    0.0097   15.3   0.0   1   1     3e-05     0.016   14.6   0.0     4    33    32    61    30    80 0.83 AAA-like domain
NACHT                PF05729.7    166 sp|P68187|MALK_ECOLI -            371     0.013   15.1   0.1   1   1   5.3e-05     0.028   14.0   0.0     3    21    32    50    30    62 0.90 NACHT domain
MobB                 PF03205.9    140 sp|P68187|MALK_ECOLI -            371     0.027   14.1   0.0   1   1   0.00012     0.065   12.9   0.0     3    21    32    50    30    54 0.91 Molybdopterin guanine dinucleotide synthesis protein B
AAA                  PF00004.24   132 sp|P68187|MALK_ECOLI -            371     0.033   14.4   0.2   1   1   0.00014     0.072   13.2   0.2     1    20    32    51    32   160 0.89 ATPase family associated with various cellular activities (AAA)
AAA_28               PF13521.1    163 sp|P68187|MALK_ECOLI -            371      0.04   13.8   0.1   1   1   0.00015     0.077   12.9   0.1     2    22    32    52    31    61 0.87 AAA domain
Rad17                PF03215.10   519 sp|P68187|MALK_ECOLI -            371     0.068   11.8   0.0   1   1   0.00017     0.088   11.4   0.0    47    69    31    53    18   139 0.77 Rad17 cell cycle checkpoint protein
MutS_V               PF00488.16   235 sp|P68187|MALK_ECOLI -            371     0.069   12.5   0.0   1   1   0.00027      0.14   11.4   0.0    29    65    15    51     5    65 0.86 MutS domain V
MMR_HSR1             PF01926.18   116 sp|P68187|MALK_ECOLI -            371     0.086   12.8   0.0   1   1   0.00035      0.18   11.7   0.0     2    21    32    51    31    83 0.85 50S ribosome-binding GTPase
PduV-EutP            PF10662.4    143 sp|P68187|MALK_ECOLI -            371     0.096   12.1   0.0   1   1   0.00036      0.19   11.2   0.0     4    26    32    54    30    71 0.87 Ethanolamine utilisation - propanediol utilisation
RNA_helicase         PF00910.17   107 sp|P68187|MALK_ECOLI -            371     0.098   12.8   0.0   1   1   0.00039      0.21   11.7   0.0     1    19    32    50    32    66 0.87 RNA helicase
Arch_ATPase          PF01637.13   234 sp|P68187|MALK_ECOLI -            371      0.11   12.1   0.0   1   1   0.00033      0.18   11.5   0.0    21    41    30    50    20    66 0.82 Archaeal ATPase
AAA_14               PF13173.1    128 sp|P68187|MALK_ECOLI -            371      0.16   11.9   0.0   1   1   0.00061      0.32   10.8   0.0     3    23    30    50    28    63 0.86 AAA domain
NB-ARC               PF00931.17   287 sp|P68187|MALK_ECOLI -            371      0.16   10.8   0.1   1   1   0.00051      0.27   10.0   0.1    17    40    27    50    10    58 0.83 NB-ARC domain
Glyco_hydro_77       PF02446.12   496 sp|P15977|MALQ_ECOLI -            694  4.1e-163  543.5   0.0   1   1  6.6e-167  4.9e-163  543.2   0.0     1   495   148   683   148   684 0.97 4-alpha-glucanotransferase
P3A                  PF08727.6     57 sp|P15977|MALQ_ECOLI -            694     0.073   12.4   0.0   1   1   2.5e-05      0.18   11.1   0.0    23    39   321   337   316   341 0.86 Poliovirus 3A protein like
Aminotran_1_2        PF00155.16   363 sp|P23256|MALY_ECOLI -            390   4.3e-60  203.5   0.0   1   1   6.5e-64   4.8e-60  203.4   0.0     3   360    30   379    28   382 0.94 Aminotransferase class I and II
Beta_elim_lyase      PF01212.16   290 sp|P23256|MALY_ECOLI -            390    0.0023   17.1   0.0   1   1     5e-07    0.0037   16.4   0.0    61   164   104   201   100   202 0.80 Beta-eliminating lyase
Alpha-amylase        PF00128.19   316 sp|P21517|MALZ_ECOLI -            604   1.4e-81  274.3   0.0   1   1   3.6e-85   1.8e-81  274.0   0.0     1   316   177   493   177   493 0.97 Alpha amylase, catalytic domain
Alpha-amylase_N      PF02903.9    120 sp|P21517|MALZ_ECOLI -            604   6.2e-09   35.8   0.0   1   1   2.7e-12   1.3e-08   34.7   0.0     5   108     3   104     1   114 0.84 Alpha amylase, N-terminal ig-like domain
DUF3459              PF11941.3     89 sp|P21517|MALZ_ECOLI -            604    0.0037   17.3   0.8   2   2   7.6e-06     0.038   14.1   0.0     1    59   513   568   513   602 0.72 Domain of unknown function (DUF3459)
PMI_typeI            PF01238.16   373 sp|P00946|MANA_ECOLI -            391  3.9e-125  417.6   0.1   1   2  4.3e-128  3.2e-124  414.7   0.0     1   373     1   357     1   357 0.99 Phosphomannose isomerase type I
Cupin_2              PF07883.6     71 sp|P00946|MANA_ECOLI -            391   1.1e-05   24.7   0.0   2   2   1.5e-07    0.0011   18.3   0.0    18    52   338   372   330   379 0.90 Cupin domain
PGM_PMM_I            PF02878.11   138 sp|P24175|MANB_ECOLI -            456   8.2e-35  119.2   0.0   1   2   6.7e-38   2.5e-34  117.7   0.0     3   135     6   134     4   137 0.94 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
PGM_PMM_III          PF02880.11   113 sp|P24175|MANB_ECOLI -            456   9.2e-31  106.2   0.0   1   1     4e-34   1.5e-30  105.5   0.0     1   113   262   373   262   373 0.96 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
PGM_PMM_II           PF02879.11   104 sp|P24175|MANB_ECOLI -            456   4.6e-22   78.3   0.1   1   1   2.6e-25   9.6e-22   77.2   0.1     1   104   153   258   153   258 0.95 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
PGM_PMM_IV           PF00408.15    73 sp|P24175|MANB_ECOLI -            456   6.6e-10   38.8   0.1   1   1   3.7e-13   1.4e-09   37.8   0.1     1    64   378   446   378   455 0.85 Phosphoglucomutase/phosphomannomutase, C-terminal domain
NTP_transferase      PF00483.18   248 sp|P24174|MANC_ECOLI -            478   3.8e-84  281.8   0.0   1   2   2.3e-87   8.6e-84  280.7   0.0     2   247     8   295     7   296 0.97 Nucleotidyl transferase
MannoseP_isomer      PF01050.13   151 sp|P24174|MANC_ECOLI -            478   5.1e-76  253.4   2.0   1   1   2.7e-79   9.9e-76  252.4   2.0     1   151   323   473   323   473 0.99 Mannose-6-phosphate isomerase
Cupin_2              PF07883.6     71 sp|P24174|MANC_ECOLI -            478   4.9e-11   41.9   0.9   2   2   6.1e-14   2.3e-10   39.8   0.1     3    70   390   457   388   458 0.89 Cupin domain
NTP_transf_3         PF12804.2    160 sp|P24174|MANC_ECOLI -            478   1.5e-09   38.1   0.1   1   2     2e-12   7.5e-09   35.8   0.1     2   111     9   135     8   152 0.74 MobA-like NTP transferase domain
Malic_M              PF03949.10   255 sp|P26616|MAO1_ECOLI -            565   3.1e-93  312.0   0.0   1   1   5.8e-97   4.3e-93  311.5   0.0     1   254   271   530   271   531 0.99 Malic enzyme, NAD binding domain
malic                PF00390.14   182 sp|P26616|MAO1_ECOLI -            565   2.1e-80  268.5   0.0   1   1   5.6e-84   4.1e-80  267.6   0.0     1   182    81   261    81   261 0.99 Malic enzyme, N-terminal domain
PTA_PTB              PF01515.14   319 sp|P76558|MAO2_ECOLI -            759  2.3e-100  335.7   0.0   1   1  8.4e-104  3.1e-100  335.3   0.0     2   319   430   751   429   751 0.98 Phosphate acetyl/butaryl transferase
Malic_M              PF03949.10   255 sp|P76558|MAO2_ECOLI -            759   3.6e-71  239.6   1.6   1   1   1.9e-74   6.9e-71  238.7   1.6     1   255   163   401   163   401 0.97 Malic enzyme, NAD binding domain
malic                PF00390.14   182 sp|P76558|MAO2_ECOLI -            759   7.1e-32  110.4   0.3   1   1   5.9e-33   2.2e-29  102.3   0.2     2   182    19   151    18   151 0.98 Malic enzyme, N-terminal domain
ELFV_dehydrog        PF00208.16   244 sp|P76558|MAO2_ECOLI -            759   9.1e-05   22.1   0.4   1   1   6.7e-08   0.00025   20.7   0.4    26   148   182   288   160   292 0.74 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Peptidase_M24        PF00557.19   207 sp|P0AE18|MAP1_ECOLI -            264   5.5e-50  169.8   0.3   1   1   4.2e-54   6.3e-50  169.6   0.3     1   207    12   242    12   242 0.86 Metallopeptidase family M24
MarC                 PF01914.12   203 sp|P0AEY1|MARC_ECOLI -            221   2.9e-69  232.2  11.2   1   1   4.4e-73   3.2e-69  232.1  11.2     1   203     5   217     5   217 0.98 MarC family integral membrane protein
Malate_synthase      PF01274.17   526 sp|P08997|MASY_ECOLI -            533    4e-214  711.4   0.0   1   1    6e-218  4.5e-214  711.3   0.0     2   525    12   532    11   533 0.99 Malate synthase
HpcH_HpaI            PF03328.9    221 sp|P08997|MASY_ECOLI -            533    0.0045   15.8   0.0   1   1     1e-06    0.0077   15.1   0.0    88   175   211   300   198   347 0.84 HpcH/HpaI aldolase/citrate lyase family
Malate_synthase      PF01274.17   526 sp|P37330|MASZ_ECOLI -            723  2.1e-196  653.0   0.1   1   1  3.2e-200  2.4e-196  652.8   0.1     2   526    18   697    17   697 0.99 Malate synthase
DUF3937              PF13073.1     73 sp|P37330|MASZ_ECOLI -            723     0.039   13.8   0.0   1   1   1.4e-05       0.1   12.4   0.0    39    69   343   375   336   379 0.88 Protein of unknown function (DUF3937)
MatP                 PF06303.7    148 sp|P0A8N0|MATP_ECOLI -            150   3.6e-75  250.8   6.6   1   1   1.7e-78   4.1e-75  250.6   6.6     1   147     1   147     1   148 0.99 Organiser of macrodomain of Terminus of chromosome
RHH_4                PF13467.1     67 sp|P0A8N0|MATP_ECOLI -            150   0.00056   19.7   0.1   1   1   5.1e-07    0.0013   18.6   0.1    15    51    93   131    88   140 0.77 Ribbon-helix-helix domain
TMF_TATA_bd          PF12325.3    121 sp|P0A8N0|MATP_ECOLI -            150    0.0035   17.0   4.2   1   1   7.9e-05       0.2   11.4   4.2    38    82   102   147    55   150 0.73 TATA element modulatory factor 1 TATA binding
DUF4254              PF14063.1    145 sp|P0A8N0|MATP_ECOLI -            150     0.018   14.6   0.8   1   1     1e-05     0.026   14.1   0.8    48   143    36   133    32   135 0.93 Protein of unknown function (DUF4254)
DUF4302              PF14135.1    235 sp|P0A8N0|MATP_ECOLI -            150     0.046   13.1   0.9   2   2   8.8e-05      0.22   10.8   0.1   108   164    88   144    58   149 0.87 Domain of unknown function (DUF4302)
Seryl_tRNA_N         PF02403.17   108 sp|P0A8N0|MATP_ECOLI -            150      0.23   11.4   6.8   2   2   0.00019      0.47   10.4   1.0    48    86   108   146   100   150 0.91 Seryl-tRNA synthetase N-terminal domain
Antitoxin-MazE       PF04014.13    47 sp|P0AE72|MAZE_ECOLI -             82     2e-11   43.3   0.3   1   1   4.4e-15   3.3e-11   42.6   0.3     1    46     7    51     7    52 0.95 Antidote-toxin recognition MazE
DUF1801              PF08818.6    103 sp|P0AE72|MAZE_ECOLI -             82      0.11   12.5   0.0   1   1   2.3e-05      0.17   11.9   0.0     2    29    48    76    47    77 0.94 Domain of unknown function (DU1801)
PemK                 PF02452.12   110 sp|P0AE70|MAZF_ECOLI -            111   2.8e-24   85.4   0.0   1   1     2e-28     3e-24   85.3   0.0     3   109    10   109     8   110 0.92 PemK-like protein
MazG                 PF03819.12    74 sp|P0AEY3|MAZG_ECOLI -            263   1.1e-37  127.7   3.7   1   2   3.2e-31   9.5e-28   95.9   0.0     1    74    27   100    27   100 0.99 MazG nucleotide pyrophosphohydrolase domain
MazG                 PF03819.12    74 sp|P0AEY3|MAZG_ECOLI -            263   1.1e-37  127.7   3.7   2   2   5.3e-11   1.6e-07   31.1   1.0    10    70   169   227   161   230 0.85 MazG nucleotide pyrophosphohydrolase domain
PRA-PH               PF01503.12    83 sp|P0AEY3|MAZG_ECOLI -            263     2e-09   37.5   1.4   1   2   2.5e-07   0.00073   19.7   0.0    20    80    25    89    11    91 0.78 Phosphoribosyl-ATP pyrophosphohydrolase
PRA-PH               PF01503.12    83 sp|P0AEY3|MAZG_ECOLI -            263     2e-09   37.5   1.4   2   2   2.3e-06    0.0069   16.6   0.3    29    70   167   233   120   260 0.70 Phosphoribosyl-ATP pyrophosphohydrolase
Apolipo_F            PF15148.1    200 sp|P0AEY3|MAZG_ECOLI -            263      0.14   11.3   2.6   2   2   0.00018      0.54    9.5   0.2   102   171   175   244   166   258 0.80 Apolipoprotein F
Gluconate_2-dh3      PF13618.1    131 sp|P0AEY3|MAZG_ECOLI -            263       2.8    8.0   6.0   1   2   0.00013      0.39   10.8   0.9    38    94    73   126    10   139 0.83 Gluconate 2-dehydrogenase subunit 3
NiFeSe_Hases         PF00374.14   507 sp|P0ACD8|MBHL_ECOLI -            597  1.3e-243  809.4   0.0   1   1  9.7e-248  1.4e-243  809.2   0.0     1   507    54   582    54   582 0.98 Nickel-dependent hydrogenase
NiFeSe_Hases         PF00374.14   507 sp|P0ACE0|MBHM_ECOLI -            567  2.8e-222  738.9   0.0   1   1  2.2e-226  3.2e-222  738.8   0.0     1   507    39   552    39   552 0.98 Nickel-dependent hydrogenase
NiFe_hyd_SSU_C       PF14720.1     86 sp|P69739|MBHS_ECOLI -            372   2.2e-34  117.3   3.9   2   2     3e-38   2.2e-34  117.3   3.9     1    84   227   310   227   312 0.97 NiFe/NiFeSe hydrogenase small subunit C-terminal
Oxidored_q6          PF01058.17   131 sp|P69739|MBHS_ECOLI -            372   8.3e-29   99.8   0.3   1   1   1.8e-32   1.3e-28   99.1   0.3     1   130    62   207    62   208 0.95 NADH ubiquinone oxidoreductase, 20 Kd subunit
Oxidored_q6          PF01058.17   131 sp|P69741|MBHT_ECOLI -            372   1.7e-32  111.7   1.4   1   2     5e-36   2.5e-32  111.2   0.7     1   130    59   204    59   205 0.96 NADH ubiquinone oxidoreductase, 20 Kd subunit
NiFe_hyd_SSU_C       PF14720.1     86 sp|P69741|MBHT_ECOLI -            372     8e-30  102.7   7.6   2   2   3.6e-33   1.8e-29  101.6   4.9     1    81   224   305   224   309 0.93 NiFe/NiFeSe hydrogenase small subunit C-terminal
TAT_signal           PF10518.4     26 sp|P69741|MBHT_ECOLI -            372     0.013   15.4   1.0   1   1   2.6e-06     0.013   15.4   1.0     2    26    13    37    12    37 0.92 TAT (twin-arginine translocation) pathway signal sequence
DUF1471              PF07338.8     56 sp|P0AAX6|MCBA_ECOLI -             86   4.2e-20   71.1   0.2   1   1     4e-24     6e-20   70.6   0.2     1    56    33    86    33    86 0.99 Protein of unknown function (DUF1471)
MFS_1                PF07690.11   352 sp|P0AEY8|MDFA_ECOLI -            410   1.3e-28   99.7  40.6   1   1   2.4e-32   1.8e-28   99.2  40.6     6   348    27   361    22   365 0.72 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P0AEY8|MDFA_ECOLI -            410   2.4e-06   26.4  31.4   1   2   1.7e-09   1.3e-05   24.0  11.4    52   188    58   188    48   195 0.92 Sugar (and other) transporter
Ldh_1_N              PF00056.18   141 sp|P61889|MDH_ECOLI  -            312   4.8e-48  162.5   0.8   1   1   2.3e-51   6.7e-48  162.0   0.8     1   141     1   145     1   145 0.99 lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C              PF02866.13   174 sp|P61889|MDH_ECOLI  -            312   8.1e-48  162.4   0.0   1   1   3.8e-51   1.1e-47  161.9   0.0     1   174   147   310   147   310 0.99 lactate/malate dehydrogenase, alpha/beta C-terminal domain
NAD_binding_10       PF13460.1    183 sp|P61889|MDH_ECOLI  -            312     0.044   13.7   2.7   1   1   7.5e-05      0.22   11.4   2.7     1    82     3   102     3   117 0.68 NADH(P)-binding
Semialdhyde_dh       PF01118.19   121 sp|P61889|MDH_ECOLI  -            312     0.059   13.6   0.8   1   2   7.1e-05      0.21   11.8   0.1     1    74     2    77     2    82 0.65 Semialdehyde dehydrogenase, NAD binding domain
ABC_membrane         PF00664.18   275 sp|P77265|MDLA_ECOLI -            590   5.3e-35  121.1   5.7   1   1   7.9e-38   6.9e-35  120.7   5.7     6   274    23   290    18   291 0.94 ABC transporter transmembrane region
ABC_tran             PF00005.22   137 sp|P77265|MDLA_ECOLI -            590   6.5e-32  110.6   0.0   1   1   1.4e-34   1.2e-31  109.8   0.0     1   136   352   500   352   501 0.89 ABC transporter
SMC_N                PF02463.14   220 sp|P77265|MDLA_ECOLI -            590   9.7e-05   21.6   0.1   2   2   3.6e-05     0.032   13.4   0.0   118   212   437   544   414   550 0.81 RecF/RecN/SMC N terminal domain
AAA_17               PF13207.1    121 sp|P77265|MDLA_ECOLI -            590   0.00031   21.5   0.0   1   1   9.9e-07   0.00086   20.1   0.0     3    37   366   398   364   458 0.76 AAA domain
DUF258               PF03193.11   161 sp|P77265|MDLA_ECOLI -            590    0.0012   18.0   0.0   1   1   2.4e-06    0.0021   17.2   0.0    18    67   344   394   334   398 0.84 Protein of unknown function, DUF258
AAA_21               PF13304.1    303 sp|P77265|MDLA_ECOLI -            590    0.0028   17.6   0.0   1   1   1.2e-05     0.011   15.7   0.0     3    34   366   398   364   418 0.73 AAA domain
AAA_18               PF13238.1    129 sp|P77265|MDLA_ECOLI -            590    0.0039   17.4   0.1   1   2   5.6e-05     0.049   13.9   0.0     2    23   366   391   365   414 0.79 AAA domain
AAA_29               PF13555.1     62 sp|P77265|MDLA_ECOLI -            590    0.0046   16.4   0.0   1   1   1.2e-05      0.01   15.3   0.0    18    41   358   380   351   395 0.79 P-loop containing region of AAA domain
AAA_23               PF13476.1    202 sp|P77265|MDLA_ECOLI -            590    0.0054   17.0   0.0   1   1     1e-05     0.009   16.3   0.0    12    39   354   382   338   383 0.78 AAA domain
DUF2254              PF10011.4    371 sp|P77265|MDLA_ECOLI -            590    0.0064   15.0   0.0   1   1   1.4e-05     0.012   14.1   0.0   122   210    50   140    38   146 0.89 Predicted membrane protein (DUF2254)
AAA_22               PF13401.1    131 sp|P77265|MDLA_ECOLI -            590     0.013   15.5   0.1   1   1   6.7e-05     0.058   13.5   0.1     5    32   363   390   359   527 0.69 AAA domain
DUF3169              PF11368.3    248 sp|P77265|MDLA_ECOLI -            590     0.016   14.4   0.1   1   1   3.5e-05      0.03   13.5   0.1    30    99    37   104    11   108 0.74 Protein of unknown function (DUF3169)
T2SE                 PF00437.15   272 sp|P77265|MDLA_ECOLI -            590     0.034   13.0   0.0   1   1   6.8e-05      0.06   12.2   0.0   121   151   355   385   309   395 0.73 Type II/IV secretion system protein
AAA_16               PF13191.1    185 sp|P77265|MDLA_ECOLI -            590      0.05   13.5   0.1   1   1   0.00016      0.14   12.1   0.1    22    73   360   410   349   525 0.76 AAA ATPase domain
AAA_19               PF13245.1     76 sp|P77265|MDLA_ECOLI -            590      0.11   12.3   0.0   1   1   0.00099      0.86    9.3   0.0     9    35   361   386   355   419 0.75 Part of AAA domain
NB-ARC               PF00931.17   287 sp|P77265|MDLA_ECOLI -            590      0.16   10.8   0.0   1   1   0.00037      0.32    9.8   0.0    20    46   363   389   354   396 0.89 NB-ARC domain
ABC_membrane         PF00664.18   275 sp|P0AAG5|MDLB_ECOLI -            593   8.4e-35  120.5   8.8   1   1   1.6e-37   1.1e-34  120.1   8.8     3   274    27   297    25   298 0.92 ABC transporter transmembrane region
ABC_tran             PF00005.22   137 sp|P0AAG5|MDLB_ECOLI -            593   2.9e-31  108.6   0.0   1   1   8.5e-34   5.5e-31  107.6   0.0     1   137   357   505   357   505 0.92 ABC transporter
SMC_N                PF02463.14   220 sp|P0AAG5|MDLB_ECOLI -            593   2.3e-07   30.2   1.1   1   1   3.3e-08   2.1e-05   23.8   1.1    23   211   366   547   356   555 0.69 RecF/RecN/SMC N terminal domain
AAA_16               PF13191.1    185 sp|P0AAG5|MDLB_ECOLI -            593   0.00067   19.6   2.3   1   1   2.6e-06    0.0017   18.4   2.3    22   183   365   529   353   571 0.61 AAA ATPase domain
AAA_29               PF13555.1     62 sp|P0AAG5|MDLB_ECOLI -            593     0.002   17.6   0.3   1   1   1.8e-05     0.011   15.1   0.1    23    39   367   383   357   390 0.81 P-loop containing region of AAA domain
AAA_17               PF13207.1    121 sp|P0AAG5|MDLB_ECOLI -            593    0.0021   18.8   0.0   1   1   9.4e-06    0.0061   17.3   0.0     2    23   370   391   369   459 0.79 AAA domain
T2SE                 PF00437.15   272 sp|P0AAG5|MDLB_ECOLI -            593    0.0033   16.3   0.0   1   1   9.7e-06    0.0062   15.4   0.0   100   152   339   391   332   400 0.85 Type II/IV secretion system protein
AAA_22               PF13401.1    131 sp|P0AAG5|MDLB_ECOLI -            593    0.0038   17.3   0.3   1   1     4e-05     0.026   14.6   0.3     3   105   366   515   362   535 0.61 AAA domain
AAA_25               PF13481.1    194 sp|P0AAG5|MDLB_ECOLI -            593    0.0065   15.8   0.5   1   1   3.9e-05     0.025   13.9   0.5    20   158   351   511   333   552 0.56 AAA domain
AAA_33               PF13671.1    143 sp|P0AAG5|MDLB_ECOLI -            593    0.0099   15.7   0.0   1   1   4.2e-05     0.027   14.3   0.0     2    32   370   397   369   461 0.84 AAA domain
DUF258               PF03193.11   161 sp|P0AAG5|MDLB_ECOLI -            593     0.013   14.7   0.0   1   1   3.7e-05     0.024   13.8   0.0    28    67   359   399   338   419 0.82 Protein of unknown function, DUF258
AAA_23               PF13476.1    202 sp|P0AAG5|MDLB_ECOLI -            593     0.015   15.6   0.0   1   1   3.8e-05     0.025   14.9   0.0    14    36   359   384   347   389 0.84 AAA domain
DUF1774              PF08611.5     97 sp|P0AAG5|MDLB_ECOLI -            593     0.033   14.3   1.0   1   1   0.00015       0.1   12.8   1.0    22    84   135   197   128   205 0.86 Fungal protein of unknown function (DUF1774)
Zeta_toxin           PF06414.7    201 sp|P0AAG5|MDLB_ECOLI -            593     0.036   13.1   0.0   1   1   0.00012     0.079   12.0   0.0    11    49   362   401   353   406 0.80 Zeta toxin
DUF87                PF01935.12   229 sp|P0AAG5|MDLB_ECOLI -            593     0.049   13.4   0.2   1   1   0.00015     0.099   12.4   0.2    26    44   370   388   361   389 0.93 Domain of unknown function DUF87
AAA_10               PF12846.2    304 sp|P0AAG5|MDLB_ECOLI -            593     0.052   12.9   0.1   1   2    0.0011      0.73    9.2   0.0     4    24   370   390   367   431 0.81 AAA-like domain
NB-ARC               PF00931.17   287 sp|P0AAG5|MDLB_ECOLI -            593      0.11   11.3   0.0   1   1   0.00031       0.2   10.5   0.0    17    37   365   385   353   388 0.82 NB-ARC domain
MobB                 PF03205.9    140 sp|P0AAG5|MDLB_ECOLI -            593      0.14   11.8   0.0   1   1    0.0006      0.39   10.4   0.0     3    21   370   388   368   393 0.88 Molybdopterin guanine dinucleotide synthesis protein B
AAA_18               PF13238.1    129 sp|P0AAG5|MDLB_ECOLI -            593      0.18   12.1   0.1   1   1   0.00068      0.44   10.8   0.1     1    19   370   388   370   408 0.90 AAA domain
MMR_HSR1             PF01926.18   116 sp|P0AAG5|MDLB_ECOLI -            593      0.21   11.5   0.4   1   1    0.0011      0.68    9.9   0.4     2    21   370   389   369   565 0.81 50S ribosome-binding GTPase
HlyD_2               PF12700.2    328 sp|P76397|MDTA_ECOLI -            415   3.7e-26   92.0   1.9   1   1   2.5e-29   4.7e-26   91.7   1.9     9   328    74   376    66   376 0.82 HlyD family secretion protein
HlyD                 PF00529.15   305 sp|P76397|MDTA_ECOLI -            415   6.1e-24   84.8  17.5   1   1   4.3e-27     8e-24   84.4  17.2     2   240    88   311    87   376 0.85 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P76397|MDTA_ECOLI -            415   2.3e-16   60.0   4.4   1   2   1.6e-06    0.0029   17.9   0.1     1    47    89   134    89   191 0.77 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P76397|MDTA_ECOLI -            415   2.3e-16   60.0   4.4   2   2   2.5e-14   4.7e-11   42.9   0.9     1   101   197   302   197   307 0.93 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P76397|MDTA_ECOLI -            415   7.5e-14   51.1   8.0   1   2   2.4e-16   4.5e-13   48.6   1.0     2    50    87   135    86   135 0.97 Biotin-lipoyl like
Biotin_lipoyl        PF00364.17    74 sp|P76397|MDTA_ECOLI -            415   8.6e-05   22.1   0.7   1   2   3.2e-06     0.006   16.1   0.0    44    74    88   118    86   118 0.94 Biotin-requiring enzyme
BMFP                 PF04380.8     79 sp|P76397|MDTA_ECOLI -            415    0.0022   18.1   1.9   1   1   2.4e-06    0.0045   17.1   1.9    29    74   141   187   117   192 0.71 Membrane fusogenic activity
PTS_EIIA_1           PF00358.15   133 sp|P76397|MDTA_ECOLI -            415      0.02   14.4   0.2   1   2   0.00011      0.21   11.1   0.0    81   114    93   126    86   135 0.86 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
FliJ                 PF02050.11   123 sp|P76397|MDTA_ECOLI -            415      0.24   11.4   6.6   1   1   0.00022      0.41   10.7   6.6     6    79   126   197   122   199 0.95 Flagellar FliJ protein
ACR_tran             PF00873.14  1021 sp|P76398|MDTB_ECOLI -           1040         0 1232.5  34.4   1   1         0         0 1232.3  34.4     2  1020    13  1022    12  1023 1.00 AcrB/AcrD/AcrF family
SecD_SecF            PF02355.11   189 sp|P76398|MDTB_ECOLI -           1040   1.7e-08   33.9  32.4   1   2   2.6e-09   1.3e-05   24.5  15.8    36   183   348   495   338   501 0.82 Protein export membrane protein
SecD_SecF            PF02355.11   189 sp|P76398|MDTB_ECOLI -           1040   1.7e-08   33.9  32.4   2   2   3.3e-06     0.016   14.3   8.6    31   184   864  1020   839  1024 0.84 Protein export membrane protein
RNA_pol_Rpb1_7       PF04990.7    135 sp|P76398|MDTB_ECOLI -           1040     0.045   13.4   0.0   2   2   3.3e-05      0.16   11.6   0.0    49    97   716   765   668   779 0.82 RNA polymerase Rpb1, domain 7
ACR_tran             PF00873.14  1021 sp|P76399|MDTC_ECOLI -           1025         0 1226.7  15.4   1   1         0         0 1226.5  15.4     2  1020     4  1008     3  1009 0.99 AcrB/AcrD/AcrF family
MMPL                 PF03176.10   333 sp|P76399|MDTC_ECOLI -           1025   4.9e-14   51.7  17.5   1   2   4.9e-12   1.8e-08   33.4   6.0   138   313   327   501   209   521 0.83 MMPL family
MMPL                 PF03176.10   333 sp|P76399|MDTC_ECOLI -           1025   4.9e-14   51.7  17.5   2   2   5.6e-09   2.1e-05   23.4   3.7    73   306   785  1012   687  1024 0.76 MMPL family
SecD_SecF            PF02355.11   189 sp|P76399|MDTC_ECOLI -           1025   1.5e-11   43.8  19.3   1   2   5.5e-10     2e-06   27.1   8.0    35   186   336   489   316   492 0.80 Protein export membrane protein
SecD_SecF            PF02355.11   189 sp|P76399|MDTC_ECOLI -           1025   1.5e-11   43.8  19.3   2   2   1.7e-08   6.3e-05   22.2   3.4    25   183   844  1005   831  1023 0.87 Protein export membrane protein
Patched              PF02460.13   800 sp|P76399|MDTC_ECOLI -           1025      0.18    9.7  12.4   1   1   8.4e-05      0.31    8.8  12.4   650   794   336   485   324   490 0.86 Patched family
MFS_1                PF07690.11   352 sp|P36554|MDTD_ECOLI -            471   5.4e-55  186.5  69.2   1   2   3.8e-53   2.8e-49  167.7  49.3     1   351    15   405    15   406 0.91 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P36554|MDTD_ECOLI -            471   5.4e-55  186.5  69.2   2   2   3.8e-12   2.8e-08   32.8  11.9    56   177   321   455   320   469 0.80 Major Facilitator Superfamily
MFS_3                PF05977.8    524 sp|P36554|MDTD_ECOLI -            471   6.8e-10   37.6  13.8   1   3   9.2e-14   6.8e-10   37.6  13.8    20   187    20   183     6   246 0.85 Transmembrane secretion effector
HlyD                 PF00529.15   305 sp|P37636|MDTE_ECOLI -            385   4.9e-73  246.1  15.8   1   1   3.2e-76   6.7e-73  245.6  15.8     1   305    61   357    61   357 0.98 HlyD family secretion protein
HlyD_2               PF12700.2    328 sp|P37636|MDTE_ECOLI -            385   2.9e-21   75.9   2.4   1   1   1.9e-24     4e-21   75.5   2.4    11   328    50   357    40   357 0.86 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P37636|MDTE_ECOLI -            385   4.1e-09   36.7   5.4   2   2   1.1e-10   2.4e-07   31.0   1.0     2   105   172   286   171   286 0.85 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P37636|MDTE_ECOLI -            385   4.1e-08   32.7   0.1   2   2   1.9e-11   4.1e-08   32.7   0.1     1    47    60   106    60   109 0.94 Biotin-lipoyl like
Halogen_Hydrol       PF10112.4    199 sp|P37636|MDTE_ECOLI -            385     0.063   12.6   0.1   1   1   4.6e-05     0.097   12.0   0.1    58    92   124   161   101   179 0.76 5-bromo-4-chloroindolyl phosphate hydrolysis protein
ACR_tran             PF00873.14  1021 sp|P37637|MDTF_ECOLI -           1037         0 1417.4  26.7   1   1         0         0 1417.2  26.7     1  1020     1  1027     1  1028 1.00 AcrB/AcrD/AcrF family
SecD_SecF            PF02355.11   189 sp|P37637|MDTF_ECOLI -           1037   1.5e-07   30.7  29.2   1   2   1.6e-07   0.00081   18.6  15.9    32   183   339   489   333   496 0.79 Protein export membrane protein
SecD_SecF            PF02355.11   189 sp|P37637|MDTF_ECOLI -           1037   1.5e-07   30.7  29.2   2   2   3.5e-07    0.0017   17.5   5.4    34   178   872  1019   857  1029 0.83 Protein export membrane protein
MMPL                 PF03176.10   333 sp|P37637|MDTF_ECOLI -           1037   1.1e-06   27.6  11.1   2   3   2.1e-10   1.1e-06   27.6  11.1   138   305   333   499   284   523 0.83 MMPL family
MFS_1                PF07690.11   352 sp|P25744|MDTG_ECOLI -            408   8.3e-53  179.3  41.7   1   2   1.4e-36   2.9e-33  115.0  27.3     2   255    20   263    19   268 0.84 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P25744|MDTG_ECOLI -            408   8.3e-53  179.3  41.7   2   2   9.3e-24     2e-20   72.8  14.3     1   171   224   395   224   407 0.90 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P25744|MDTG_ECOLI -            408   7.2e-15   54.5  29.1   1   3   2.3e-12     5e-09   35.2  15.8    10   191    24   192    14   192 0.83 Sugar (and other) transporter
Sugar_tr             PF00083.19   451 sp|P25744|MDTG_ECOLI -            408   7.2e-15   54.5  29.1   2   3   0.00035      0.73    8.3   1.6    53    99   153   195   134   251 0.71 Sugar (and other) transporter
Sugar_tr             PF00083.19   451 sp|P25744|MDTG_ECOLI -            408   7.2e-15   54.5  29.1   3   3   4.1e-08   8.7e-05   21.2   6.0    46   185   258   391   222   397 0.87 Sugar (and other) transporter
MFS_2                PF13347.1    428 sp|P25744|MDTG_ECOLI -            408   1.3e-12   46.8  24.2   1   3   3.9e-06    0.0083   14.5   9.4   227   342    16   134    11   155 0.77 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P25744|MDTG_ECOLI -            408   1.3e-12   46.8  24.2   2   3   5.6e-14   1.2e-10   40.4   4.2   148   312   146   310   136   339 0.81 MFS/sugar transport protein
MFS_1_like           PF12832.2     77 sp|P25744|MDTG_ECOLI -            408   3.8e-05   23.3   9.4   1   4   6.2e-08   0.00013   21.6   0.6    11    74    25    93    18    96 0.82 MFS_1 like family
ATG22                PF11700.3    477 sp|P25744|MDTG_ECOLI -            408   0.00048   18.7  19.2   1   3   4.6e-06    0.0097   14.4   0.5    74   116    58   100    45   105 0.84 Vacuole effluxer Atg22 like
ATG22                PF11700.3    477 sp|P25744|MDTG_ECOLI -            408   0.00048   18.7  19.2   2   3   7.6e-06     0.016   13.7   5.0   369   472    95   197    92   202 0.89 Vacuole effluxer Atg22 like
MFS_3                PF05977.8    524 sp|P25744|MDTG_ECOLI -            408    0.0016   16.6  18.5   1   1   1.2e-06    0.0026   15.9  18.5    65   387    74   391    57   406 0.79 Transmembrane secretion effector
BT1                  PF03092.11   433 sp|P25744|MDTG_ECOLI -            408    0.0016   17.2   2.1   1   2   2.6e-06    0.0054   15.4   0.4   135   196   153   214    83   311 0.77 BT1 family
MFS_1                PF07690.11   352 sp|P69367|MDTH_ECOLI -            402   4.3e-32  111.2  48.2   1   2   1.5e-23   1.1e-19   70.3  26.1     6   174    20   187    15   223 0.87 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P69367|MDTH_ECOLI -            402   4.3e-32  111.2  48.2   2   2     1e-15   7.6e-12   44.6  17.2     3   175   211   391   209   401 0.87 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P69367|MDTH_ECOLI -            402   0.00013   20.6   7.7   2   3   1.8e-08   0.00013   20.6   7.7    63   189    63   182    61   196 0.89 Sugar (and other) transporter
Multi_Drug_Res       PF00893.14    93 sp|P69210|MDTI_ECOLI -            109   6.7e-29  100.2   6.5   1   1   3.8e-32     8e-29   99.9   6.5     3    93     6    99     4    99 0.96 Small Multidrug Resistance protein
EmrE                 PF13536.1    113 sp|P69210|MDTI_ECOLI -            109   9.4e-05   22.5  11.0   1   1   5.5e-08   0.00012   22.2  11.0    11   105    12   107     2   109 0.77 Multidrug resistance efflux transporter
EamA                 PF00892.15   126 sp|P69210|MDTI_ECOLI -            109   0.00051   20.0  10.6   1   1   3.3e-07   0.00071   19.6  10.6    53   124    34   106     3   108 0.75 EamA-like transporter family
UPF0060              PF02694.10   107 sp|P69210|MDTI_ECOLI -            109    0.0035   17.3   7.9   1   1   2.4e-06    0.0052   16.7   7.8    19   101    24   106     7   109 0.75 Uncharacterised BCR, YnfA/UPF0060 family
UPF0546              PF10639.4    113 sp|P69210|MDTI_ECOLI -            109    0.0046   16.7   0.1   1   1   2.9e-06    0.0062   16.3   0.0    62   112    56   106    37   107 0.92 Uncharacterised protein family UPF0546
TPT                  PF03151.11   153 sp|P69210|MDTI_ECOLI -            109     0.017   14.8   3.8   1   1   1.8e-05     0.037   13.6   3.8   108   149    63   104    10   106 0.83 Triose-phosphate Transporter family
Nuc_sug_transp       PF04142.10   244 sp|P69210|MDTI_ECOLI -            109     0.032   13.3   3.4   2   2   1.2e-05     0.025   13.6   1.2    46    89    65   108    23   109 0.86 Nucleotide-sugar transporter
Multi_Drug_Res       PF00893.14    93 sp|P69212|MDTJ_ECOLI -            121     6e-26   90.7  12.2   1   1   3.9e-29   8.3e-26   90.2  12.2     2    92     4    94     3    95 0.98 Small Multidrug Resistance protein
Nuc_sug_transp       PF04142.10   244 sp|P69212|MDTJ_ECOLI -            121    0.0019   17.3   0.5   1   1   1.2e-06    0.0025   16.9   0.4    45    95    60   110    35   120 0.80 Nucleotide-sugar transporter
EmrE                 PF13536.1    113 sp|P69212|MDTJ_ECOLI -            121    0.0031   17.6  11.2   1   1   1.8e-06    0.0039   17.3  11.2    11   106     9   104     1   109 0.74 Multidrug resistance efflux transporter
EamA                 PF00892.15   126 sp|P69212|MDTJ_ECOLI -            121      0.01   15.8  14.9   1   1   6.1e-06     0.013   15.5  14.9    54   124    33   102     2   104 0.80 EamA-like transporter family
UPF0060              PF02694.10   107 sp|P69212|MDTJ_ECOLI -            121      0.11   12.5   7.7   1   1   6.4e-05      0.13   12.2   7.7    10   106    10   107     2   108 0.84 Uncharacterised BCR, YnfA/UPF0060 family
PIRT                 PF15099.1    129 sp|P69212|MDTJ_ECOLI -            121       2.5    7.3   5.3   2   2   0.00027      0.58    9.3   1.9    66   102    72   107    49   115 0.76 Phosphoinositide-interacting protein family
MatE                 PF01554.13   162 sp|P37340|MDTK_ECOLI -            457   2.5e-73  245.0  36.2   1   4   2.7e-41     2e-37  128.2   5.4     1   162    17   177    17   177 0.98 MatE
MatE                 PF01554.13   162 sp|P37340|MDTK_ECOLI -            457   2.5e-73  245.0  36.2   3   4   7.6e-42   5.6e-38  130.0  12.3     1   162   244   405   244   405 1.00 MatE
Polysacc_synt_C      PF14667.1    146 sp|P37340|MDTK_ECOLI -            457   4.8e-10   39.4   3.9   1   4   6.5e-14   4.8e-10   39.4   3.9     1    86   130   222   130   269 0.84 Polysaccharide biosynthesis C-terminal domain
MFS_1                PF07690.11   352 sp|P31462|MDTL_ECOLI -            391   1.1e-43  149.3  38.1   1   2     3e-47   1.1e-43  149.3  38.1     3   348    10   342     8   347 0.88 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P31462|MDTL_ECOLI -            391   1.2e-12   47.1   7.3   1   1   3.3e-16   1.2e-12   47.1   7.3    42   191    34   177    21   183 0.87 Sugar (and other) transporter
TRI12                PF06609.8    599 sp|P31462|MDTL_ECOLI -            391   4.5e-07   28.4   3.4   1   2   1.2e-10   4.5e-07   28.4   3.4    66   215    25   175     4   223 0.77 Fungal trichothecene efflux pump (TRI12)
FUSC                 PF04632.7    650 sp|P32715|MDTO_ECOLI -            683   9.4e-57  192.8  21.3   1   2   1.9e-60   9.4e-57  192.8  21.3     8   529    36   540    30   561 0.87 Fusaric acid resistance protein family
FUSC_2               PF13515.1    128 sp|P32715|MDTO_ECOLI -            683   6.1e-09   35.8   9.6   2   2   1.2e-12   6.1e-09   35.8   9.6     2   127   364   495   359   496 0.75 Fusaric acid resistance protein-like
ALMT                 PF11744.3    406 sp|P32715|MDTO_ECOLI -            683   1.8e-05   23.6  10.9   2   2   6.6e-09   3.3e-05   22.7   2.7    27   194   362   525   348   582 0.82 Aluminium activated malate transporter
HlyD                 PF00529.15   305 sp|P32716|MDTN_ECOLI -            343   5.2e-54  183.6   5.8   1   1   3.2e-57   5.8e-54  183.4   5.8     2   304    49   337    48   338 0.94 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P32716|MDTN_ECOLI -            343   6.8e-20   71.3   0.1   1   2   9.7e-07    0.0018   18.5   0.1     5    86    54   136    50   162 0.80 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P32716|MDTN_ECOLI -            343   6.8e-20   71.3   0.1   2   2   1.3e-16   2.4e-13   50.3   0.0     1    85   210   293   210   333 0.91 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P32716|MDTN_ECOLI -            343   1.1e-19   69.8   0.0   1   2   4.8e-19   8.9e-16   57.2   0.1     4    49    50    95    47    96 0.92 Biotin-lipoyl like
HlyD_2               PF12700.2    328 sp|P32716|MDTN_ECOLI -            343   9.9e-19   67.6   0.0   1   1   7.4e-22   1.4e-18   67.1   0.0    19   239    46   287    39   298 0.73 HlyD family secretion protein
Biotin_lipoyl        PF00364.17    74 sp|P32716|MDTN_ECOLI -            343   8.3e-05   22.1   0.1   1   2   3.8e-05     0.071   12.7   0.1    45    74    50    79    48    79 0.90 Biotin-requiring enzyme
OEP                  PF02321.13   188 sp|P32716|MDTN_ECOLI -            343     0.057   13.0  12.7   1   1   2.7e-05      0.05   13.1  11.8    85   180    84   179    76   185 0.92 Outer membrane efflux protein
Tropomyosin_1        PF12718.2    143 sp|P32716|MDTN_ECOLI -            343     0.058   13.2   0.7   1   1     5e-05     0.092   12.5   0.7    26   110    84   170    79   178 0.82 Tropomyosin like
Myosin_tail_1        PF01576.14   859 sp|P32716|MDTN_ECOLI -            343     0.069   10.8   3.0   1   1   4.8e-05      0.09   10.4   3.0   551   675    84   207    67   214 0.84 Myosin tail
OEP                  PF02321.13   188 sp|P32714|MDTP_ECOLI -            488   7.3e-21   74.6  13.4   1   2     2e-14     3e-10   39.9   3.4     1   188    69   268    69   268 0.89 Outer membrane efflux protein
OEP                  PF02321.13   188 sp|P32714|MDTP_ECOLI -            488   7.3e-21   74.6  13.4   2   2   1.7e-14   2.6e-10   40.2   2.4     6   188   295   476   290   476 0.88 Outer membrane efflux protein
MFS_1                PF07690.11   352 sp|P39386|MDTM_ECOLI -            410   7.4e-31  107.1  44.1   1   2   9.9e-35   7.4e-31  107.1  44.1     6   344    23   353    18   361 0.77 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P39386|MDTM_ECOLI -            410   3.1e-08   32.6  14.2   1   3   4.2e-12   3.1e-08   32.6  14.2    50   216    52   210    24   215 0.91 Sugar (and other) transporter
OEP                  PF02321.13   188 sp|P33369|MDTQ_ECOLI -            478   6.4e-32  110.6  24.3   1   2   7.6e-23   5.6e-19   68.4   8.9     3   188    69   266    67   266 0.96 Outer membrane efflux protein
OEP                  PF02321.13   188 sp|P33369|MDTQ_ECOLI -            478   6.4e-32  110.6  24.3   2   2     1e-16   7.5e-13   48.4   7.4     7   188   293   473   287   473 0.92 Outer membrane efflux protein
Autoind_bind         PF03472.10   149 sp|P33369|MDTQ_ECOLI -            478      0.07   12.4   0.1   2   2     4e-05       0.3   10.3   0.0    90   126   343   379   329   399 0.83 Autoinducer binding domain
MFS_2                PF13347.1    428 sp|P02921|MELB_ECOLI -            473  2.2e-109  365.7  42.9   1   1  4.9e-113  2.4e-109  365.5  42.9     3   427     8   436     6   437 0.97 MFS/sugar transport protein
DUF4448              PF14610.1    189 sp|P02921|MELB_ECOLI -            473     0.091   12.2   0.0   1   1   5.3e-05      0.26   10.7   0.0   154   181   405   434   395   442 0.79 Protein of unknown function (DUF4448)
MFS_1                PF07690.11   352 sp|P02921|MELB_ECOLI -            473       2.2    6.9  57.3   1   3     1e-05      0.05   12.2  13.9   215   336    15   144     5   160 0.76 Major Facilitator Superfamily
UbiA                 PF01040.13   257 sp|P32166|MENA_ECOLI -            308   6.8e-37  127.0  21.0   1   1   1.2e-40   8.9e-37  126.6  21.0     1   224    21   272    21   306 0.76 UbiA prenyltransferase family
DUF1673              PF07895.6    205 sp|P32166|MENA_ECOLI -            308   0.00013   21.5   1.0   1   2   0.00012      0.91    9.0   0.1    46   150     7   126     2   176 0.72 Protein of unknown function (DUF1673)
DUF1673              PF07895.6    205 sp|P32166|MENA_ECOLI -            308   0.00013   21.5   1.0   2   2   2.8e-05      0.21   11.1   0.1    27   134   198   301   191   306 0.78 Protein of unknown function (DUF1673)
ECH                  PF00378.15   245 sp|P0ABU0|MENB_ECOLI -            285   5.6e-66  222.1   0.0   1   1   1.4e-69   6.8e-66  221.8   0.0     5   245    31   273    27   273 0.96 Enoyl-CoA hydratase/isomerase family
Peptidase_S49        PF01343.13   154 sp|P0ABU0|MENB_ECOLI -            285     0.033   13.9   0.4   1   2   7.1e-05      0.35   10.6   0.1     7    43   120   156   114   160 0.93 Peptidase family S49
SDH_sah              PF01972.11   286 sp|P0ABU0|MENB_ECOLI -            285      0.15   10.8   0.0   1   1   4.6e-05      0.23   10.2   0.0   117   177   117   181   102   188 0.80 Serine dehydrogenase proteinase
MR_MLE               PF01188.16    67 sp|P29208|MENC_ECOLI -            320   3.9e-10   40.1   0.2   1   1   1.5e-13   1.1e-09   38.6   0.2     2    67   146   213   145   213 0.85 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
MR_MLE_C             PF13378.1    111 sp|P29208|MENC_ECOLI -            320   0.00013   21.8   0.0   1   1   4.8e-08   0.00035   20.4   0.0     9    73   220   287   213   313 0.77 Enolase C-terminal domain-like
TPP_enzyme_N         PF02776.13   172 sp|P17109|MEND_ECOLI -            556   2.3e-25   89.0   1.0   1   2   1.4e-25     1e-21   77.1   0.2     2   135     9   141     8   172 0.88 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_N         PF02776.13   172 sp|P17109|MEND_ECOLI -            556   2.3e-25   89.0   1.0   2   2   4.6e-05      0.34   10.3   0.0    52   147   422   524   386   538 0.71 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_C         PF02775.16   153 sp|P17109|MEND_ECOLI -            556   5.3e-10   39.0   0.0   2   2   1.6e-13   1.2e-09   37.9   0.0    26   153   414   535   396   535 0.90 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
Chorismate_bind      PF00425.13   257 sp|P38051|MENF_ECOLI -            431   6.6e-63  212.4   0.0   1   1   5.6e-67   8.2e-63  212.1   0.0     2   257   169   420   168   420 0.97 chorismate binding enzyme
AMP-binding          PF00501.23   417 sp|P37353|MENE_ECOLI -            451   2.7e-63  213.8   0.0   1   1   4.9e-67   3.6e-63  213.3   0.0     4   414    11   355     8   358 0.83 AMP-binding enzyme
AMP-binding_C        PF13193.1     73 sp|P37353|MENE_ECOLI -            451   4.9e-08   33.7   0.3   1   1   1.6e-11   1.2e-07   32.5   0.3     1    66   366   431   366   434 0.92 AMP-binding enzyme C-terminal domain
Abhydrolase_6        PF12697.2    228 sp|P37355|MENH_ECOLI -            252   1.5e-24   87.1   3.7   1   1   7.3e-28   1.8e-24   86.8   3.7     1   226    17   243    17   245 0.82 Alpha/beta hydrolase family
Abhydrolase_5        PF12695.2    145 sp|P37355|MENH_ECOLI -            252   3.2e-15   56.1   0.3   1   1   4.2e-18     1e-14   54.5   0.3     1   145    16   233    16   233 0.81 Alpha/beta hydrolase family
Abhydrolase_1        PF00561.15   230 sp|P37355|MENH_ECOLI -            252   1.3e-07   31.4   0.0   1   1     7e-11   1.7e-07   31.0   0.0     6   224    45   242    42   248 0.89 alpha/beta hydrolase fold
Lipase_3             PF01764.20   141 sp|P37355|MENH_ECOLI -            252   0.00097   18.7   0.2   1   1   7.7e-07    0.0019   17.8   0.0    48    84    62    98    26   125 0.86 Lipase (class 3)
Hydrolase_4          PF12146.3     79 sp|P37355|MENH_ECOLI -            252     0.002   17.9   0.1   1   1   1.8e-06    0.0044   16.8   0.1    18    72    16    66     2    72 0.85 Putative lysophospholipase
Thioesterase         PF00975.15   229 sp|P37355|MENH_ECOLI -            252    0.0023   18.1   0.3   1   2   8.1e-06      0.02   15.1   0.1     4   123    18   142    15   210 0.67 Thioesterase domain
4HBT                 PF03061.17    79 sp|P77781|MENI_ECOLI -            136   6.3e-17   61.4   0.1   1   1   6.2e-21   9.2e-17   60.9   0.1     1    79    50   127    50   127 0.99 Thioesterase superfamily
Peptidase_M74        PF03411.8    240 sp|P0C0T5|MEPA_ECOLI -            274  6.7e-137  454.3   0.1   1   1  5.2e-141  7.7e-137  454.1   0.1     1   239    35   273    35   274 1.00 Penicillin-insensitive murein endopeptidase
NLPC_P60             PF00877.14   105 sp|P76190|MEPH_ECOLI -            271   1.4e-33  114.8   0.0   1   1   2.3e-36   3.5e-33  113.5   0.0     1   105   153   263   153   263 0.98 NlpC/P60 family
DUF1175              PF06672.6    217 sp|P76190|MEPH_ECOLI -            271   8.5e-05   21.9   1.0   2   3   0.00022      0.33   10.2   0.0    50    73   164   187   117   201 0.69 Protein of unknown function (DUF1175)
DUF1175              PF06672.6    217 sp|P76190|MEPH_ECOLI -            271   8.5e-05   21.9   1.0   3   3    0.0005      0.75    9.0   0.0   134   162   203   231   190   245 0.87 Protein of unknown function (DUF1175)
DUF830               PF05708.7    158 sp|P76190|MEPH_ECOLI -            271   0.00031   20.7   4.8   1   2     2e-06     0.003   17.5   1.0    73   135   129   193    61   200 0.68 Orthopoxvirus protein of unknown function (DUF830)
LRAT                 PF04970.8    126 sp|P76190|MEPH_ECOLI -            271     0.085   12.8   0.0   1   1   5.7e-05     0.085   12.8   0.0     6    45   204   246   200   264 0.78 Lecithin retinol acyltransferase
Ycf1                 PF05758.7    929 sp|P76190|MEPH_ECOLI -            271      0.13    9.9   5.9   1   1   9.9e-05      0.15    9.7   5.9   202   290     7   115     1   159 0.41 Ycf1
DUF2946              PF11162.3    122 sp|P76190|MEPH_ECOLI -            271      0.21   11.8   4.2   1   1   0.00033      0.48   10.6   4.2     4   119     9   164     6   165 0.74 Protein of unknown function (DUF2946)
Gastrin              PF00918.12   116 sp|P76190|MEPH_ECOLI -            271      0.99   10.2   6.6   1   1   0.00053      0.79   10.5   4.5     6    78    11    95     7   115 0.61 Gastrin/cholecystokinin family
Peptidase_M23        PF01551.17    96 sp|P0AFS9|MEPM_ECOLI -            440   2.1e-34  117.4   0.2   1   1   1.5e-37   4.5e-34  116.3   0.2     2    96   313   407   312   407 0.98 Peptidase family M23
OapA                 PF04225.7     85 sp|P0AFS9|MEPM_ECOLI -            440     9e-11   41.5   0.5   1   2   4.4e-11   1.3e-07   31.3   0.0     3    81    96   172    94   176 0.88 Opacity-associated protein A LysM-like domain
LysM                 PF01476.15    44 sp|P0AFS9|MEPM_ECOLI -            440   5.4e-08   32.5   0.1   1   1   6.9e-11   2.1e-07   30.7   0.1     1    43    98   141    98   142 0.94 LysM domain
OapA_N               PF08525.6     30 sp|P0AFS9|MEPM_ECOLI -            440   3.8e-07   29.6   0.2   1   1   2.2e-10   6.6e-07   28.9   0.2     2    29    11    39    10    40 0.92 Opacity-associated protein A N-terminal motif
Biotin_lipoyl_2      PF13533.1     50 sp|P0AFS9|MEPM_ECOLI -            440    0.0048   16.5   0.1   1   1   6.8e-06      0.02   14.5   0.0    14    31   364   381   362   382 0.91 Biotin-lipoyl like
NLPC_P60             PF00877.14   105 sp|P0AFV4|MEPS_ECOLI -            188   1.3e-34  118.1   0.1   1   1   7.5e-38   1.9e-34  117.6   0.1     1   105    79   183    79   183 0.98 NlpC/P60 family
LRAT                 PF04970.8    126 sp|P0AFV4|MEPS_ECOLI -            188     0.006   16.5   0.0   1   1   4.6e-06     0.011   15.6   0.0     6    46   127   168   123   186 0.73 Lecithin retinol acyltransferase
DHQS                 PF01959.11   354 sp|P0AFV4|MEPS_ECOLI -            188      0.03   13.0   0.0   1   1   1.9e-05     0.047   12.3   0.0   316   347   119   150   116   156 0.90 3-dehydroquinate synthase (EC 4.6.1.3)
Amidase_5            PF05382.8    145 sp|P0AFV4|MEPS_ECOLI -            188      0.03   13.9   0.2   1   1   4.9e-05      0.12   11.9   0.2    66   122   122   170    79   185 0.60 Bacteriophage peptidoglycan hydrolase
DUF1175              PF06672.6    217 sp|P0AFV4|MEPS_ECOLI -            188     0.063   12.6   0.0   2   2   0.00037      0.92    8.8   0.0   131   167   121   154   113   166 0.72 Protein of unknown function (DUF1175)
HTS                  PF04204.11   298 sp|P07623|META_ECOLI -            309  1.2e-131  437.8   0.0   1   1  9.1e-136  1.3e-131  437.7   0.0     1   298     2   299     2   299 1.00 Homoserine O-succinyltransferase
Cys_Met_Meta_PP      PF01053.15   386 sp|P00935|METB_ECOLI -            386  5.9e-140  465.9   0.0   1   1  1.8e-143  6.7e-140  465.7   0.0     1   385     6   380     6   381 0.99 Cys/Met metabolism PLP-dependent enzyme
Aminotran_1_2        PF00155.16   363 sp|P00935|METB_ECOLI -            386   9.7e-08   31.3   0.0   1   1   3.8e-11   1.4e-07   30.8   0.0    49   192    57   178    43   212 0.84 Aminotransferase class I and II
Aminotran_5          PF00266.14   371 sp|P00935|METB_ECOLI -            386    0.0001   21.1   0.0   1   1     4e-08   0.00015   20.6   0.0    68   201    73   198    44   214 0.84 Aminotransferase class-V
SelA                 PF03841.8    367 sp|P00935|METB_ECOLI -            386    0.0057   15.4   0.0   1   1   4.5e-06     0.017   13.9   0.0    44   226    48   214    43   223 0.83 L-seryl-tRNA selenium transferase
Cys_Met_Meta_PP      PF01053.15   386 sp|P06721|METC_ECOLI -            395  1.4e-122  408.7   0.0   1   1  2.1e-126  1.6e-122  408.5   0.0     1   385     7   391     7   392 0.97 Cys/Met metabolism PLP-dependent enzyme
Aminotran_5          PF00266.14   371 sp|P06721|METC_ECOLI -            395     0.001   17.9   0.3   2   2   2.6e-07    0.0019   16.9   0.1    75   202    88   212    84   330 0.82 Aminotransferase class-V
Meth_synt_2          PF01717.13   324 sp|P25665|METE_ECOLI -            753  3.2e-162  539.0   0.0   1   2   3.4e-10   1.7e-06   27.2   0.0   120   186   154   221   114   237 0.85 Cobalamin-independent synthase, Catalytic domain
Meth_synt_2          PF01717.13   324 sp|P25665|METE_ECOLI -            753  3.2e-162  539.0   0.0   2   2  6.9e-157  3.4e-153  509.3   0.0     1   324   426   749   426   749 1.00 Cobalamin-independent synthase, Catalytic domain
Meth_synt_1          PF08267.7    311 sp|P25665|METE_ECOLI -            753  9.5e-141  468.5   0.0   1   3  3.8e-129  1.9e-125  418.2   0.0     2   308     5   313     4   316 0.98 Cobalamin-independent synthase, N-terminal domain
Meth_synt_1          PF08267.7    311 sp|P25665|METE_ECOLI -            753  9.5e-141  468.5   0.0   3   3   5.4e-14   2.7e-10   40.0   0.0   141   285   538   690   528   715 0.80 Cobalamin-independent synthase, N-terminal domain
DUF2300              PF10062.4    138 sp|P25665|METE_ECOLI -            753      0.27   10.9   3.5   1   1   0.00013      0.66    9.7   2.8    30   117   334   423   309   431 0.76 Predicted secreted protein (DUF2300)
MTHFR                PF02219.12   287 sp|P0AEZ1|METF_ECOLI -            296  4.2e-109  364.0   0.0   1   1  3.2e-113  4.8e-109  363.8   0.0     4   287    14   291    11   291 0.97 Methylenetetrahydrofolate reductase
S-methyl_trans       PF02574.11   305 sp|P13009|METH_ECOLI -           1227  1.5e-104  349.6   0.1   1   1  1.1e-107  2.7e-104  348.7   0.1     1   304    16   326    16   327 0.98 Homocysteine S-methyltransferase
Met_synt_B12         PF02965.12   211 sp|P13009|METH_ECOLI -           1227   4.2e-89  297.3   0.0   1   1   3.8e-92   9.3e-89  296.1   0.0     2   211   937  1209   936  1209 0.99 Vitamin B12 dependent methionine synthase, activation domain
Pterin_bind          PF00809.17   210 sp|P13009|METH_ECOLI -           1227   1.7e-48  164.8   0.4   1   1     2e-51     5e-48  163.2   0.4     1   210   356   568   356   568 0.98 Pterin binding enzyme
B12-binding_2        PF02607.12    79 sp|P13009|METH_ECOLI -           1227   3.8e-21   74.9   0.0   1   1   6.1e-24   1.5e-20   72.9   0.0     4    79   659   734   657   734 0.96 B12 binding domain
B12-binding          PF02310.14   121 sp|P13009|METH_ECOLI -           1227   1.1e-19   70.4   0.2   1   1   3.3e-22   8.3e-19   67.6   0.2     2    94   748   840   747   851 0.93 B12 binding domain
BPD_transp_1         PF00528.17   185 sp|P31547|METI_ECOLI -            217   1.6e-20   73.4  20.1   1   1   1.1e-24   1.6e-20   73.4  20.1     2   181    32   216    27   217 0.85 Binding-protein-dependent transport system inner membrane component
MetJ                 PF01340.15   104 sp|P0A8U6|METJ_ECOLI -            105     1e-69  230.8   0.1   1   1   1.5e-73   1.1e-69  230.6   0.1     1   104     2   105     2   105 1.00 Met Apo-repressor, MetJ
AphA_like            PF14557.1    175 sp|P0A8U6|METJ_ECOLI -            105     0.058   12.9   0.0   1   1   9.5e-06      0.07   12.6   0.0   100   137    21    58    13    83 0.88 Putative AphA-like transcriptional regulator
S-AdoMet_synt_C      PF02773.11   138 sp|P0A817|METK_ECOLI -            384     4e-76  253.3   0.0   1   1   1.2e-79   6.1e-76  252.7   0.0     1   138   233   370   233   370 1.00 S-adenosylmethionine synthetase, C-terminal domain
S-AdoMet_synt_M      PF02772.11   120 sp|P0A817|METK_ECOLI -            384     6e-51  171.4   0.0   2   2   3.7e-54   1.8e-50  169.8   0.0     2   120   114   231   113   231 0.99 S-adenosylmethionine synthetase, central domain
S-AdoMet_synt_N      PF00438.15   100 sp|P0A817|METK_ECOLI -            384   2.5e-43  146.3   0.1   1   1   9.6e-47   4.7e-43  145.4   0.1     2   100     3   101     2   101 0.99 S-adenosylmethionine synthetase, N-terminal domain
ABC_tran             PF00005.22   137 sp|P30750|METN_ECOLI -            343     3e-37  127.9   0.0   1   1   5.3e-40   4.9e-37  127.2   0.0     1   137    21   169    21   169 0.95 ABC transporter
NIL                  PF09383.5     76 sp|P30750|METN_ECOLI -            343   8.3e-23   79.7   0.0   1   1   1.9e-25   1.7e-22   78.7   0.0     4    76   268   340   266   340 0.98 NIL domain
AAA_21               PF13304.1    303 sp|P30750|METN_ECOLI -            343   1.5e-12   48.0   0.1   1   2   6.5e-05     0.061   13.2   0.0     3    23    35    55    33    93 0.81 AAA domain
AAA_21               PF13304.1    303 sp|P30750|METN_ECOLI -            343   1.5e-12   48.0   0.1   2   2   7.6e-11   7.1e-08   32.7   0.0   220   298   124   200    90   205 0.84 AAA domain
AAA_22               PF13401.1    131 sp|P30750|METN_ECOLI -            343   1.4e-06   28.4   0.7   1   1   9.1e-09   8.4e-06   25.9   0.7     8   129    35   205    30   207 0.82 AAA domain
AAA_10               PF12846.2    304 sp|P30750|METN_ECOLI -            343   1.8e-06   27.6   0.1   2   2   2.8e-06    0.0026   17.2   0.0   214   264   147   202    63   214 0.76 AAA-like domain
SMC_N                PF02463.14   220 sp|P30750|METN_ECOLI -            343   3.4e-06   26.4   0.2   1   1   3.1e-08   2.8e-05   23.4   0.2    26   213    33   215    15   221 0.62 RecF/RecN/SMC N terminal domain
AAA_16               PF13191.1    185 sp|P30750|METN_ECOLI -            343   0.00025   21.0   0.6   1   1   8.4e-07   0.00078   19.4   0.5    25   178    32   191    15   204 0.54 AAA ATPase domain
SbcCD_C              PF13558.1     90 sp|P30750|METN_ECOLI -            343    0.0021   17.9   0.2   1   1   1.3e-05     0.012   15.5   0.2    32    89   140   184   131   185 0.79 Putative exonuclease SbcCD, C subunit
AAA_25               PF13481.1    194 sp|P30750|METN_ECOLI -            343    0.0043   16.4   0.1   1   2   0.00029      0.27   10.5   0.0    29    50    27    48    10    62 0.91 AAA domain
AAA_29               PF13555.1     62 sp|P30750|METN_ECOLI -            343    0.0045   16.4   0.0   1   1   9.6e-06    0.0089   15.5   0.0    22    41    30    49    19    61 0.79 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|P30750|METN_ECOLI -            343     0.011   14.8   0.1   1   1   2.1e-05     0.019   14.1   0.1    23    56    18    52     3    87 0.76 Protein of unknown function, DUF258
AAA_33               PF13671.1    143 sp|P30750|METN_ECOLI -            343     0.065   13.1   0.1   1   1   0.00022       0.2   11.5   0.1     4    32    36    68    34   207 0.67 AAA domain
Miro                 PF08477.8    119 sp|P30750|METN_ECOLI -            343     0.082   13.4   0.0   1   1   0.00019      0.17   12.3   0.0     4    51    36    84    34    99 0.70 Miro-like protein
MMR_HSR1             PF01926.18   116 sp|P30750|METN_ECOLI -            343      0.11   12.4   0.2   1   1   0.00027      0.25   11.3   0.2     3    37    35    74    33   225 0.73 50S ribosome-binding GTPase
AAA_17               PF13207.1    121 sp|P30750|METN_ECOLI -            343      0.13   13.0   0.8   1   1   0.00049      0.46   11.3   0.8     1    17    33    49    33    51 0.90 AAA domain
Lipoprotein_9        PF03180.9    237 sp|P28635|METQ_ECOLI -            271  1.1e-100  335.4   2.9   1   1  3.3e-104  1.2e-100  335.2   2.9     1   237    33   271    33   271 0.99 NLPA lipoprotein
OpuAC                PF04069.7    257 sp|P28635|METQ_ECOLI -            271   9.7e-05   21.8   1.0   1   1   3.7e-08   0.00014   21.3   1.0     2   113    32   132    31   261 0.83 Substrate binding domain of ABC-type glycine betaine transport system
Phosphonate-bd       PF12974.2    243 sp|P28635|METQ_ECOLI -            271    0.0011   18.4   0.1   1   2   6.5e-07    0.0024   17.2   0.0    21   112    50   137    39   154 0.83 ABC transporter, phosphonate, periplasmic substrate-binding protein
SBP_bac_3            PF00497.15   225 sp|P28635|METQ_ECOLI -            271     0.042   13.0   4.1   1   2   6.7e-05      0.25   10.5   0.3   112   186    34   113    24   123 0.67 Bacterial extracellular solute-binding proteins, family 3
TRCF                 PF03461.10   101 sp|P30958|MFD_ECOLI  -           1148   3.6e-29  100.6   0.0   2   2   1.5e-31   3.1e-28   97.6   0.0     1    97  1005  1101  1005  1105 0.95 TRCF domain
CarD_CdnL_TRCF       PF02559.11    98 sp|P30958|MFD_ECOLI  -           1148   2.7e-28   97.8   0.0   1   1   3.7e-31   7.8e-28   96.3   0.0     1    98   476   573   476   573 0.98 CarD-like/TRCF domain
DEAD                 PF00270.24   169 sp|P30958|MFD_ECOLI  -           1148   1.1e-24   86.7   0.1   1   1   1.6e-27   3.5e-24   85.1   0.1     1   166   602   763   602   766 0.88 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|P30958|MFD_ECOLI  -           1148     1e-16   60.5   0.9   2   2   3.6e-18   7.7e-15   54.5   0.5     8    77   836   906   832   907 0.96 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|P30958|MFD_ECOLI  -           1148     1e-11   44.9   0.0   1   1     1e-14   2.1e-11   43.9   0.0     3   182   600   758   598   760 0.81 Type III restriction enzyme, res subunit
UB2H                 PF14814.1     85 sp|P30958|MFD_ECOLI  -           1148   3.5e-06   26.6   0.2   1   2   1.3e-08   2.7e-05   23.8   0.0     2    42   131   171   130   179 0.92 Bifunctional transglycosylase second domain
ABC_tran             PF00005.22   137 sp|P0AAG8|MGLA_ECOLI -            506   7.9e-50  168.7   0.3   1   2     2e-32   2.1e-29  102.5   0.0     1   137    29   178    29   178 0.97 ABC transporter
ABC_tran             PF00005.22   137 sp|P0AAG8|MGLA_ECOLI -            506   7.9e-50  168.7   0.3   2   2   1.3e-20   1.4e-17   64.2   0.1     2   136   280   434   279   435 0.78 ABC transporter
AAA_21               PF13304.1    303 sp|P0AAG8|MGLA_ECOLI -            506   3.6e-12   46.8   1.3   1   2   3.8e-09   4.1e-06   26.9   0.2     2   297    42   207    41   208 0.60 AAA domain
AAA_21               PF13304.1    303 sp|P0AAG8|MGLA_ECOLI -            506   3.6e-12   46.8   1.3   2   2   7.1e-05     0.075   12.9   0.1   188   295   356   463   301   470 0.67 AAA domain
AAA_15               PF13175.1    415 sp|P0AAG8|MGLA_ECOLI -            506   9.9e-08   31.4   1.7   1   2   9.4e-08   9.9e-05   21.5   0.1    18   164    32   197    19   214 0.66 AAA ATPase domain
SMC_N                PF02463.14   220 sp|P0AAG8|MGLA_ECOLI -            506   0.00089   18.5   1.9   1   2   9.5e-06      0.01   15.1   0.5    24   207    39   218    22   227 0.63 RecF/RecN/SMC N terminal domain
DUF2813              PF11398.3    373 sp|P0AAG8|MGLA_ECOLI -            506   0.00094   18.3   0.0   1   1   1.3e-06    0.0014   17.7   0.0    18    68    33    87    19   128 0.73 Protein of unknown function (DUF2813)
AAA_23               PF13476.1    202 sp|P0AAG8|MGLA_ECOLI -            506    0.0011   19.3   0.1   1   1   4.8e-06    0.0051   17.1   0.0    13    40    32    60    21   105 0.80 AAA domain
AAA_29               PF13555.1     62 sp|P0AAG8|MGLA_ECOLI -            506    0.0016   17.9   0.0   1   1   3.9e-06    0.0042   16.5   0.0    16    40    33    56    27    62 0.81 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|P0AAG8|MGLA_ECOLI -            506    0.0043   16.2   0.9   1   2   1.6e-05     0.017   14.3   0.0    25    64    28    68    14    89 0.82 Protein of unknown function, DUF258
AAA_16               PF13191.1    185 sp|P0AAG8|MGLA_ECOLI -            506    0.0049   16.8   0.0   1   1   8.7e-06    0.0092   15.9   0.0    28    80    43    91    28   234 0.80 AAA ATPase domain
AAA_22               PF13401.1    131 sp|P0AAG8|MGLA_ECOLI -            506      0.04   14.0   0.2   1   1   0.00028       0.3   11.2   0.1     5    30    40    65    36   212 0.71 AAA domain
BPD_transp_2         PF02653.11   267 sp|P23200|MGLC_ECOLI -            336   1.1e-50  172.1  43.6   1   1   2.9e-54   1.1e-50  172.1  43.6     1   267    41   325    41   325 0.91 Branched-chain amino acid transport system / permease component
DUF3239              PF11580.3    128 sp|P23200|MGLC_ECOLI -            336       0.1   12.6   0.1   1   1   4.4e-05      0.16   11.9   0.1    19    95    27   106    19   109 0.87 Protein of unknown function (DUF3239)
DUF4225              PF13988.1    168 sp|P23200|MGLC_ECOLI -            336         2    7.8  10.7   1   2   1.7e-05     0.062   12.7   1.3    27    87    94   154    83   179 0.82 Protein of unknown function (DUF4225)
MgrB                 PF13998.1     29 sp|P64512|MGRB_ECOLI -             47   5.2e-18   64.4   4.4   1   1   8.8e-22   6.6e-18   64.1   4.4     1    29    19    47    19    47 0.99 MgrB protein
VirB3                PF05101.8     89 sp|P64512|MGRB_ECOLI -             47     0.077   12.9   1.1   1   1   1.3e-05     0.093   12.7   1.1    43    73     9    41     3    45 0.74 Type IV secretory pathway, VirB3-like protein
MGS                  PF02142.17    95 sp|P0A731|MGSA_ECOLI -            152   4.4e-18   65.0   0.0   1   1   3.9e-22   5.8e-18   64.6   0.0     2    95    26   118    25   118 0.96 MGS-like domain
FAD_binding_3        PF01494.14   356 sp|P77397|MHPA_ECOLI -            554   2.2e-81  273.6   0.0   1   1   2.3e-84   2.8e-81  273.3   0.0     2   355    16   352    15   353 0.95 FAD binding domain
Pyr_redox            PF00070.22    80 sp|P77397|MHPA_ECOLI -            554   7.1e-05   23.1   0.0   1   1   2.7e-07   0.00033   20.9   0.1     2    37    18    52    17    66 0.90 Pyridine nucleotide-disulphide oxidoreductase
HI0933_like          PF03486.9    409 sp|P77397|MHPA_ECOLI -            554    0.0014   17.1   0.6   1   2   5.2e-06    0.0064   15.0   0.5     2    35    17    50    16    52 0.93 HI0933-like protein
DAO                  PF01266.19   358 sp|P77397|MHPA_ECOLI -            554    0.0025   16.7   0.5   1   2   6.6e-05     0.082   11.7   0.1     2    30    18    46    17    49 0.95 FAD dependent oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|P77397|MHPA_ECOLI -            554    0.0036   17.2   0.1   1   1   1.3e-05     0.016   15.1   0.1     1    32    17    48    17    66 0.92 Pyridine nucleotide-disulphide oxidoreductase
Thi4                 PF01946.12   230 sp|P77397|MHPA_ECOLI -            554    0.0042   16.2   0.1   1   1   5.8e-06    0.0072   15.4   0.1    18    48    16    46     7    49 0.92 Thi4 family
2-Hacid_dh_C         PF02826.14   178 sp|P77397|MHPA_ECOLI -            554    0.0055   15.8   0.0   1   3   0.00073       0.9    8.6   0.0    35    70    14    49     4    75 0.84 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
NAD_binding_8        PF13450.1     68 sp|P77397|MHPA_ECOLI -            554    0.0081   16.1   0.0   1   1   1.5e-05     0.019   14.9   0.0     1    29    20    48    20    50 0.93 NAD(P)-binding Rossmann-like domain
UDPG_MGDP_dh_N       PF03721.9    185 sp|P77397|MHPA_ECOLI -            554     0.015   14.6   0.3   1   1   2.1e-05     0.026   13.9   0.3     2    37    17    52    16    59 0.92 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
Pyr_redox_3          PF13738.1    203 sp|P77397|MHPA_ECOLI -            554     0.037   14.0   0.3   1   2    0.0004      0.49   10.4   0.3     1    31    19    48    19    68 0.93 Pyridine nucleotide-disulphide oxidoreductase
TrkA_N               PF02254.13   116 sp|P77397|MHPA_ECOLI -            554     0.077   12.9   0.0   1   1   0.00016      0.19   11.7   0.0     1    41    18    58    18    69 0.87 TrkA-N domain
ThiF                 PF00899.16   136 sp|P77397|MHPA_ECOLI -            554      0.11   12.2   0.7   1   1   0.00036      0.44   10.3   0.3     2    31    15    44    14    51 0.88 ThiF family
LigB                 PF02900.13   272 sp|P0ABR9|MHPB_ECOLI -            314   2.8e-86  288.8   0.0   1   1   2.1e-90   3.2e-86  288.7   0.0     2   272     5   306     4   306 0.97 Catalytic LigB subunit of aromatic ring-opening dioxygenase
Abhydrolase_6        PF12697.2    228 sp|P77044|MHPC_ECOLI -            288   3.6e-36  125.1   0.0   1   1   2.3e-39   4.3e-36  124.9   0.0     1   227    38   279    38   280 0.73 Alpha/beta hydrolase family
Abhydrolase_1        PF00561.15   230 sp|P77044|MHPC_ECOLI -            288   4.1e-25   88.6   0.0   1   1   3.1e-28   5.7e-25   88.2   0.0     1   228    66   281    66   283 0.90 alpha/beta hydrolase fold
Abhydrolase_5        PF12695.2    145 sp|P77044|MHPC_ECOLI -            288   1.1e-17   64.1   0.0   1   1   4.7e-20   8.7e-17   61.2   0.0     1   144    37   267    37   268 0.67 Alpha/beta hydrolase family
Hydrolase_4          PF12146.3     79 sp|P77044|MHPC_ECOLI -            288   0.00064   19.5   0.0   1   1   7.9e-07    0.0015   18.3   0.0    16    61    35    88    21   105 0.77 Putative lysophospholipase
Esterase             PF00756.15   251 sp|P77044|MHPC_ECOLI -            288    0.0044   16.4   0.0   1   1     5e-06    0.0092   15.4   0.0   118   145   109   136    87   144 0.79 Putative esterase
Ndr                  PF03096.9    283 sp|P77044|MHPC_ECOLI -            288     0.017   13.6   0.0   1   1   9.8e-06     0.018   13.5   0.0    86   138    93   145    64   285 0.77 Ndr family
Abhydrolase_3        PF07859.8    211 sp|P77044|MHPC_ECOLI -            288     0.053   13.0   0.0   1   1   4.2e-05     0.077   12.5   0.0    60   156   100   190    90   218 0.69 alpha/beta hydrolase fold
FAA_hydrolase        PF01557.13   218 sp|P77608|MHPD_ECOLI -            269   3.8e-25   88.6   0.0   1   1   3.4e-29   5.1e-25   88.2   0.0     2   217    56   259    55   260 0.88 Fumarylacetoacetate (FAA) hydrolase family
MFS_1                PF07690.11   352 sp|P77589|MHPT_ECOLI -            403   1.4e-38  132.5  69.5   1   2   1.1e-40     4e-37  127.7  43.4     2   294    21   301    20   304 0.91 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P77589|MHPT_ECOLI -            403   1.4e-38  132.5  69.5   2   2   7.7e-06     0.029   13.1  21.9    69   171   290   390   289   400 0.78 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P77589|MHPT_ECOLI -            403   3.7e-16   58.7  12.9   1   2     1e-19   3.7e-16   58.7  12.9    44   201    48   199    22   203 0.88 Sugar (and other) transporter
P5-ATPase            PF12409.3    119 sp|P77589|MHPT_ECOLI -            403     0.026   14.3   3.9   2   2   0.00025      0.94    9.3   0.9    17    50   217   250   212   254 0.85 P5-type ATPase cation transporter
Adipogenin           PF15202.1     81 sp|P77589|MHPT_ECOLI -            403         9    6.2   8.0   2   2   0.00018      0.66    9.8   1.2    15    42   216   244   204   255 0.79 Adipogenin
IPPT                 PF01715.12   253 sp|P16384|MIAA_ECOLI -            316  9.4e-108  359.0   0.0   1   1  6.7e-111  1.1e-107  358.7   0.0     2   252    45   297    44   298 0.99 IPP transferase
IPT                  PF01745.11   233 sp|P16384|MIAA_ECOLI -            316     7e-07   28.6   0.0   1   2   7.7e-08   0.00013   21.2   0.0     5   100    14   109    10   120 0.80 Isopentenyl transferase
AAA_17               PF13207.1    121 sp|P16384|MIAA_ECOLI -            316   1.9e-05   25.4   0.0   1   1   2.5e-08   4.1e-05   24.4   0.0     2    67    13    82    12   219 0.79 AAA domain
AAA_33               PF13671.1    143 sp|P16384|MIAA_ECOLI -            316    0.0013   18.6   0.0   1   2   6.6e-06     0.011   15.6   0.0     2    46    13    60    12   226 0.78 AAA domain
Zeta_toxin           PF06414.7    201 sp|P16384|MIAA_ECOLI -            316     0.003   16.6   0.2   1   2   7.2e-06     0.012   14.7   0.1    14    46     8    39     2   154 0.84 Zeta toxin
AAA_16               PF13191.1    185 sp|P16384|MIAA_ECOLI -            316    0.0067   16.4   0.4   1   1   1.7e-05     0.028   14.4   0.4    21   131     7   139     3   304 0.75 AAA ATPase domain
AAA_18               PF13238.1    129 sp|P16384|MIAA_ECOLI -            316    0.0098   16.2   0.0   1   1   2.2e-05     0.036   14.3   0.0     1    23    13    38    13    75 0.78 AAA domain
TIP49                PF06068.8    398 sp|P16384|MIAA_ECOLI -            316     0.053   12.2   0.1   1   1   4.7e-05     0.078   11.6   0.1    51    75    11    35     4    52 0.81 TIP49 C-terminus
Mg_chelatase         PF01078.16   207 sp|P16384|MIAA_ECOLI -            316      0.14   11.2   0.0   1   1   0.00016      0.26   10.4   0.0    24    48    12    36     6    69 0.86 Magnesium chelatase, subunit ChlI
Radical_SAM          PF04055.16   166 sp|P0AEI1|MIAB_ECOLI -            474   5.3e-30  104.7   0.0   1   1   2.3e-33   8.7e-30  104.0   0.0     1   166   151   325   151   325 0.97 Radical SAM superfamily
UPF0004              PF00919.15    98 sp|P0AEI1|MIAB_ECOLI -            474   8.5e-29   99.2   0.0   1   1     4e-32   1.5e-28   98.4   0.0     1    98     4   104     4   104 0.95 Uncharacterized protein family UPF0004
TRAM                 PF01938.15    61 sp|P0AEI1|MIAB_ECOLI -            474     5e-20   71.0   0.1   1   1   3.1e-23   1.1e-19   69.9   0.1     1    61   378   440   378   440 0.96 TRAM domain
B12-binding          PF02310.14   121 sp|P0AEI1|MIAB_ECOLI -            474     0.011   15.5   0.0   1   2   3.7e-05      0.14   12.0   0.0    68   113    60   106    34   111 0.70 B12 binding domain
MinC_C               PF03775.11   105 sp|P18196|MINC_ECOLI -            231   4.8e-40  135.4   0.0   1   1   1.5e-43   7.2e-40  134.8   0.0     1   105   125   230   125   230 0.98 Septum formation inhibitor MinC, C-terminal domain
MinC_N               PF05209.8     99 sp|P18196|MINC_ECOLI -            231   4.4e-35  119.4   0.0   1   1   1.3e-38   6.4e-35  118.8   0.0     1    99     1   104     1   104 0.98 Septum formation inhibitor MinC, N-terminal domain
DUF1204              PF06721.6    228 sp|P18196|MINC_ECOLI -            231     0.031   13.5   0.0   1   1     9e-06     0.045   13.0   0.0    88   159    20    95     7   102 0.79 Protein of unknown function (DUF1204)
CbiA                 PF01656.18   195 sp|P0AEZ3|MIND_ECOLI -            270   1.3e-28   99.7   0.4   1   1     2e-31   1.7e-28   99.3   0.4     1   193     5   217     5   219 0.81 CobQ/CobB/MinD/ParA nucleotide binding domain
AAA_31               PF13614.1    157 sp|P0AEZ3|MIND_ECOLI -            270   7.4e-18   64.9   0.0   1   1   1.2e-20     1e-17   64.5   0.0     1   156     3   151     3   152 0.92 AAA domain
ArsA_ATPase          PF02374.10   305 sp|P0AEZ3|MIND_ECOLI -            270   7.1e-10   38.4   2.9   1   1     1e-12   8.7e-10   38.1   2.1     3    38     5    40     2    46 0.91 Anion-transporting ATPase
MipZ                 PF09140.6    261 sp|P0AEZ3|MIND_ECOLI -            270     3e-08   33.0   0.6   1   1     7e-11   6.1e-08   32.0   0.6     1   127     3   142     3   166 0.69 ATPase MipZ
Fer4_NifH            PF00142.13   273 sp|P0AEZ3|MIND_ECOLI -            270   0.00018   20.7   1.8   1   2   5.8e-06     0.005   16.0   1.0     5    37     8    40     3    65 0.83 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
YhjQ                 PF06564.7    244 sp|P0AEZ3|MIND_ECOLI -            270   0.00035   20.0   0.1   1   1   2.1e-06    0.0018   17.6   0.1     7   153     8   149     2   156 0.73 YhjQ protein
VirC1                PF07015.6    231 sp|P0AEZ3|MIND_ECOLI -            270     0.008   15.2   0.2   1   1   1.9e-05     0.016   14.2   0.2     3    38     4    39     2    45 0.89 VirC1 protein
SRP54                PF00448.17   196 sp|P0AEZ3|MIND_ECOLI -            270    0.0092   15.4   2.2   1   1   1.4e-05     0.012   15.0   1.3     3    38     5    40     3    43 0.90 SRP54-type protein, GTPase domain
AAA_17               PF13207.1    121 sp|P0AEZ3|MIND_ECOLI -            270     0.015   16.1   0.8   1   1   4.7e-05     0.041   14.7   0.8     2    96     5   142     4   266 0.75 AAA domain
AAA_24               PF13479.1    213 sp|P0AEZ3|MIND_ECOLI -            270     0.042   13.4   0.1   1   1   8.5e-05     0.074   12.6   0.1     4    38     4    46     2   121 0.78 AAA domain
Zeta_toxin           PF06414.7    201 sp|P0AEZ3|MIND_ECOLI -            270     0.047   12.7   0.1   1   1   0.00012       0.1   11.6   0.0    16    57     3    46     1    95 0.80 Zeta toxin
AAA_10               PF12846.2    304 sp|P0AEZ3|MIND_ECOLI -            270     0.063   12.7   0.4   1   1   0.00013      0.12   11.8   0.4     5    37     7    39     5    48 0.91 AAA-like domain
DUF87                PF01935.12   229 sp|P0AEZ3|MIND_ECOLI -            270     0.064   13.0   0.4   1   1    0.0002      0.17   11.6   0.4    30    61    10    40     9   211 0.85 Domain of unknown function DUF87
MobB                 PF03205.9    140 sp|P0AEZ3|MIND_ECOLI -            270     0.087   12.5   1.3   1   1   0.00017      0.15   11.7   1.3     2    46     5    48     3   114 0.87 Molybdopterin guanine dinucleotide synthesis protein B
AAA_25               PF13481.1    194 sp|P0AEZ3|MIND_ECOLI -            270      0.12   11.7   2.2   1   1   0.00058       0.5    9.7   2.2    36   150     6   121     3   128 0.65 AAA domain
AAA_30               PF13604.1    196 sp|P0AEZ3|MIND_ECOLI -            270      0.19   11.2   1.4   1   1   0.00045      0.39   10.2   1.4    18    51     3    36     1    39 0.86 AAA domain
MinE                 PF03776.9     70 sp|P0A734|MINE_ECOLI -             88   3.5e-28   96.8   0.8   1   1   5.5e-32   4.1e-28   96.6   0.8     1    70    14    83    14    83 0.94 Septum formation topological specificity factor MinE
RBD                  PF02196.10    71 sp|P0A734|MINE_ECOLI -             88      0.04   13.6   0.1   1   1   9.1e-06     0.067   12.9   0.1    24    63    44    83    43    87 0.78 Raf-like Ras-binding domain
Flavodoxin_1         PF00258.20   143 sp|P03817|MIOC_ECOLI -            147   5.1e-22   78.4   0.0   1   1   7.7e-26   5.7e-22   78.2   0.0     2   143     7   138     6   138 0.93 Flavodoxin
FMN_red              PF03358.10   152 sp|P03817|MIOC_ECOLI -            147    0.0036   16.8   0.0   1   1   7.3e-07    0.0054   16.2   0.0     3    70     4    75     2    77 0.85 NADPH-dependent FMN reductase
MipA                 PF06629.7    226 sp|P0A908|MIPA_ECOLI -            248   1.7e-76  256.5   6.4   1   1     4e-80     2e-76  256.3   6.4     2   226    26   248    25   248 0.99 MltA-interacting protein MipA
OMP_b-brl            PF13505.1    176 sp|P0A908|MIPA_ECOLI -            248   1.8e-05   24.7  11.6   1   1   9.5e-09   4.7e-05   23.3  11.6     2   176     8   248     6   248 0.68 Outer membrane protein beta-barrel domain
PagL                 PF09411.5    139 sp|P0A908|MIPA_ECOLI -            248     0.063   13.3   1.9   2   2   5.1e-05      0.25   11.4   0.4    44    84   136   182    72   224 0.72 Lipid A 3-O-deacylase (PagL)
Permease             PF02405.11   215 sp|P64606|MLAE_ECOLI -            260   1.9e-73  246.4  16.5   1   1   1.6e-77   2.4e-73  246.1  16.5     3   215    44   257    42   257 0.99 Permease
MCE                  PF02470.15    81 sp|P64604|MLAD_ECOLI -            183   1.2e-21   76.5   0.0   1   1   2.2e-25   1.6e-21   76.0   0.0     2    80    39   116    38   117 0.97 mce related protein
DUF3649              PF12365.3     28 sp|P64604|MLAD_ECOLI -            183      0.46   10.0   5.4   1   1   0.00012      0.92    9.0   5.4    11    24     9    22     9    24 0.96 Protein of unknown function (DUF3649)
VacJ                 PF04333.8    200 sp|P76506|MLAA_ECOLI -            251   1.5e-82  275.8   0.0   1   1   1.2e-86   1.8e-82  275.6   0.0     2   199    25   225    24   226 0.98 VacJ like lipoprotein
Tol_Tol_Ttg2         PF05494.7    170 sp|P0ADV7|MLAC_ECOLI -            211   7.7e-48  162.2   0.0   1   1   6.1e-52   9.1e-48  162.0   0.0     2   168    32   199    31   201 0.96 Toluene tolerance, Ttg2
ABC_tran             PF00005.22   137 sp|P63386|MLAF_ECOLI -            269   7.2e-29  100.8   0.0   1   1   1.3e-31   9.3e-29  100.4   0.0     2   136    25   172    24   173 0.86 ABC transporter
AAA_21               PF13304.1    303 sp|P63386|MLAF_ECOLI -            269   3.3e-12   46.9   0.0   1   2   2.7e-05      0.02   14.8   0.0     1    54    36    71    36    86 0.78 AAA domain
AAA_21               PF13304.1    303 sp|P63386|MLAF_ECOLI -            269   3.3e-12   46.9   0.0   2   2   5.5e-10     4e-07   30.2   0.0   234   302   142   209   136   210 0.93 AAA domain
AAA_25               PF13481.1    194 sp|P63386|MLAF_ECOLI -            269   0.00013   21.4   0.1   1   1     4e-07    0.0003   20.2   0.1    30    80    31    70    24   205 0.83 AAA domain
DUF258               PF03193.11   161 sp|P63386|MLAF_ECOLI -            269   0.00042   19.5   0.0   1   1   7.9e-07   0.00059   19.0   0.0    34    65    33    64     9   105 0.83 Protein of unknown function, DUF258
AAA_16               PF13191.1    185 sp|P63386|MLAF_ECOLI -            269   0.00078   19.4   0.0   1   1   2.1e-06    0.0016   18.4   0.0    23    54    33    64    21   169 0.87 AAA ATPase domain
ABC_ATPase           PF09818.4    448 sp|P63386|MLAF_ECOLI -            269    0.0036   15.9   2.1   1   2   0.00041       0.3    9.6   0.2   240   264    29    54    25    62 0.90 Predicted ATPase of the ABC class
AAA_29               PF13555.1     62 sp|P63386|MLAF_ECOLI -            269    0.0039   16.6   0.0   1   1     1e-05    0.0074   15.7   0.0    12    40    24    51    20    54 0.83 P-loop containing region of AAA domain
AAA_22               PF13401.1    131 sp|P63386|MLAF_ECOLI -            269    0.0059   16.7   0.0   1   1   1.6e-05     0.012   15.8   0.0     4    25    34    55    30    99 0.82 AAA domain
AAA_23               PF13476.1    202 sp|P63386|MLAF_ECOLI -            269     0.018   15.3   0.4   1   1   3.3e-05     0.025   14.9   0.4    18    39    33    54    17    56 0.81 AAA domain
AAA_24               PF13479.1    213 sp|P63386|MLAF_ECOLI -            269     0.022   14.3   0.0   1   1   5.1e-05     0.037   13.5   0.0     5    23    36    54    32    94 0.84 AAA domain
AAA_3                PF07726.6    131 sp|P63386|MLAF_ECOLI -            269     0.026   14.1   0.0   1   1   7.7e-05     0.057   13.0   0.0     4    72    39   107    37   145 0.83 ATPase family associated with various cellular activities (AAA)
AAA_14               PF13173.1    128 sp|P63386|MLAF_ECOLI -            269     0.044   13.6   0.0   1   1   0.00011     0.078   12.8   0.0     2    27    34    59    33   107 0.76 AAA domain
NACHT                PF05729.7    166 sp|P63386|MLAF_ECOLI -            269     0.048   13.3   0.1   1   1    0.0001     0.077   12.6   0.1     3    25    37    59    35    66 0.82 NACHT domain
AAA_17               PF13207.1    121 sp|P63386|MLAF_ECOLI -            269     0.058   14.2   0.0   1   1   0.00023      0.17   12.6   0.0     3    19    38    54    36    89 0.89 AAA domain
SbcCD_C              PF13558.1     90 sp|P63386|MLAF_ECOLI -            269     0.061   13.2   0.0   1   1   0.00014      0.11   12.4   0.0    45    89   150   188   134   189 0.82 Putative exonuclease SbcCD, C subunit
AAA_10               PF12846.2    304 sp|P63386|MLAF_ECOLI -            269     0.068   12.6   0.1   1   1   0.00029      0.22   10.9   0.1     4    25    37    58    34    67 0.86 AAA-like domain
AAA                  PF00004.24   132 sp|P63386|MLAF_ECOLI -            269      0.11   12.7   0.0   1   1    0.0004       0.3   11.2   0.0     3    22    39    58    37   103 0.70 ATPase family associated with various cellular activities (AAA)
Arch_ATPase          PF01637.13   234 sp|P63386|MLAF_ECOLI -            269      0.22   11.1   0.0   1   1   0.00043      0.32   10.6   0.0    21    40    35    54    27    79 0.88 Archaeal ATPase
AAA_15               PF13175.1    415 sp|P63386|MLAF_ECOLI -            269      0.26   10.2   0.0   1   1   0.00064      0.48    9.4   0.0    17    47    26    68     9   102 0.77 AAA ATPase domain
ROK                  PF00480.15   179 sp|P50456|MLC_ECOLI  -            406   1.1e-35  123.1   0.0   1   1   4.2e-39   1.6e-35  122.5   0.0     4   178    92   273    89   274 0.86 ROK family
Fe_dep_repress       PF01325.14    60 sp|P50456|MLC_ECOLI  -            406    0.0032   17.3   0.0   1   1     2e-06    0.0073   16.2   0.0    12    53    20    61    19    66 0.95 Iron dependent repressor, N-terminal DNA binding domain
MarR                 PF01047.17    59 sp|P50456|MLC_ECOLI  -            406    0.0063   16.1   0.0   1   1   4.1e-06     0.015   14.9   0.0    10    48    23    61    20    67 0.93 MarR family
MarR_2               PF12802.2     62 sp|P50456|MLC_ECOLI  -            406     0.012   15.2   1.2   1   1   4.8e-06     0.018   14.7   0.1    22    54    31    63    19    73 0.83 MarR family
MliC                 PF09864.4     72 sp|P28224|MLIC_ECOLI -            109   1.2e-19   69.7   0.0   1   1     3e-23   1.5e-19   69.4   0.0     1    71    35   101    35   102 0.94 Membrane-bound lysozyme-inhibitor of c-type lysozyme
Lipoprotein_19       PF13617.1     59 sp|P28224|MLIC_ECOLI -            109      0.11   12.1   0.0   1   1   2.9e-05      0.14   11.7   0.0     4    34     6    47     3    63 0.93 YnbE-like lipoprotein
LPAM_1               PF08139.7     25 sp|P28224|MLIC_ECOLI -            109      0.22   11.8   1.3   1   1     8e-05      0.39   11.0   1.3     1    25     3    20     3    20 0.91 Prokaryotic membrane lipoprotein lipid attachment site
DUF3393              PF11873.3    204 sp|P0C066|MLTC_ECOLI -            359   7.9e-75  250.8   0.0   1   1   2.8e-78     1e-74  250.4   0.0     1   204     2   191     2   191 0.99 Domain of unknown function (DUF3393)
SLT                  PF01464.15   121 sp|P0C066|MLTC_ECOLI -            359     1e-29  102.4   0.1   1   1   4.4e-33   1.6e-29  101.8   0.1     3   118   196   319   194   322 0.95 Transglycosylase SLT domain
SLT_2                PF13406.1    262 sp|P0C066|MLTC_ECOLI -            359    0.0011   17.9   0.0   1   1   5.6e-07    0.0021   17.0   0.0    70   104   189   223   183   250 0.84 Transglycosylase SLT domain
Lysozyme_like        PF13702.1    160 sp|P0C066|MLTC_ECOLI -            359    0.0024   17.3   0.0   1   1   2.3e-05     0.084   12.3   0.0     3    98   187   304   185   347 0.65 Lysozyme-like
LysM                 PF01476.15    44 sp|P0AEZ7|MLTD_ECOLI -            452   1.4e-28   98.4   0.0   2   3   1.2e-17     2e-14   53.2   0.0     1    43   343   384   343   385 0.98 LysM domain
LysM                 PF01476.15    44 sp|P0AEZ7|MLTD_ECOLI -            452   1.4e-28   98.4   0.0   3   3   6.2e-13     1e-09   38.1   0.0     1    42   402   441   402   443 0.90 LysM domain
SLT                  PF01464.15   121 sp|P0AEZ7|MLTD_ECOLI -            452   6.3e-26   90.2   0.1   1   1   6.2e-29     1e-25   89.5   0.1     2   118   103   215   102   218 0.97 Transglycosylase SLT domain
OapA                 PF04225.7     85 sp|P0AEZ7|MLTD_ECOLI -            452   0.00028   20.6   0.1   2   2   0.00047      0.77    9.6   0.0     4    51   401   442   398   451 0.74 Opacity-associated protein A LysM-like domain
HTH_Tnp_1            PF01527.15    76 sp|P0AEZ7|MLTD_ECOLI -            452   0.00033   20.5   0.1   2   3   0.00016      0.26   11.2   0.0    23    56   348   380   343   401 0.78 Transposase
DUF3071              PF11268.3    170 sp|P0AEZ7|MLTD_ECOLI -            452    0.0023   17.7   0.0   2   2   0.00032      0.52   10.0   0.0    58    90   396   428   312   431 0.72 Protein of unknown function (DUF3071)
MLTD_N               PF06474.7     34 sp|P0AEZ7|MLTD_ECOLI -            452    0.0043   17.2   3.2   1   2   3.5e-06    0.0058   16.7   1.1    20    34     4    18     1    18 0.92 MltD lipid attachment motif
SBP_bac_3            PF00497.15   225 sp|P0AGC5|MLTF_ECOLI -            518   1.2e-30  106.5   0.0   1   1   4.4e-34   2.2e-30  105.6   0.0    10   224    52   267    45   268 0.91 Bacterial extracellular solute-binding proteins, family 3
SLT                  PF01464.15   121 sp|P0AGC5|MLTF_ECOLI -            518   5.2e-27   93.7   0.1   1   1   1.7e-30   8.6e-27   93.0   0.1     5   118   295   404   292   407 0.95 Transglycosylase SLT domain
Lysozyme_like        PF13702.1    160 sp|P0AGC5|MLTF_ECOLI -            518   1.6e-06   27.7   0.0   1   1   1.2e-09   5.7e-06   25.8   0.0     8   100   291   391   283   448 0.65 Lysozyme-like
AA_permease          PF00324.16   478 sp|Q47689|MMUP_ECOLI -            467  2.3e-113  379.0  42.2   1   1  3.7e-117  2.7e-113  378.8  42.2     1   466    18   451    18   462 0.95 Amino acid permease
AA_permease_2        PF13520.1    426 sp|Q47689|MMUP_ECOLI -            467   1.8e-46  158.5  47.9   1   1   2.8e-50   2.1e-46  158.3  47.9     3   419    16   443    14   451 0.87 Amino acid permease
Acetyltransf_4       PF13420.1    155 sp|P76112|MNAT_ECOLI -            172   5.5e-22   78.3   0.0   1   1   4.2e-25   6.2e-22   78.2   0.0     1   152     3   154     3   157 0.92 Acetyltransferase (GNAT) domain
Acetyltransf_1       PF00583.19    83 sp|P76112|MNAT_ECOLI -            172   8.9e-18   64.1   0.0   1   1     1e-20   1.5e-17   63.3   0.0     2    82    57   136    56   137 0.95 Acetyltransferase (GNAT) family
Acetyltransf_3       PF13302.1    142 sp|P76112|MNAT_ECOLI -            172   6.7e-12   45.7   0.0   1   1   5.4e-15     8e-12   45.5   0.0     4   142     3   137     1   137 0.85 Acetyltransferase (GNAT) domain
FR47                 PF08445.5     86 sp|P76112|MNAT_ECOLI -            172   5.5e-09   35.6   0.0   1   1   6.4e-12   9.5e-09   34.9   0.0    26    80    84   139    79   144 0.91 FR47-like protein
Acetyltransf_10      PF13673.1    117 sp|P76112|MNAT_ECOLI -            172   6.9e-09   35.8   0.1   1   1   6.1e-12   9.1e-09   35.4   0.1     1   117    10   136    10   136 0.72 Acetyltransferase (GNAT) domain
Acetyltransf_7       PF13508.1     79 sp|P76112|MNAT_ECOLI -            172   7.3e-09   35.6   0.0   1   1   7.2e-12   1.1e-08   35.1   0.0     5    78    53   137    49   138 0.75 Acetyltransferase (GNAT) domain
Acetyltransf_9       PF13527.1    127 sp|P76112|MNAT_ECOLI -            172   7.6e-06   25.7   0.1   1   1   3.8e-08   5.6e-05   23.0   0.1     2   107     3   114     2   118 0.78 Acetyltransferase (GNAT) domain
Acetyltransf_CG      PF14542.1     78 sp|P76112|MNAT_ECOLI -            172   3.5e-05   23.6   0.0   1   1   3.8e-08   5.6e-05   22.9   0.0    10    59    62   116    53   118 0.74 GCN5-related N-acetyl-transferase
Acetyltransf_8       PF13523.1    152 sp|P76112|MNAT_ECOLI -            172   4.8e-05   23.2   0.1   1   1   4.5e-08   6.7e-05   22.8   0.1     4   142     6   142     3   149 0.75 Acetyltransferase (GNAT) domain
Hen1_L               PF12623.2    245 sp|P76112|MNAT_ECOLI -            172      0.15   10.8   0.0   1   1   0.00014       0.2   10.3   0.0   123   173   115   165    99   170 0.85 RNA repair, ligase-Pnkp-associating, region of Hen1
Glyco_hydro_38       PF01074.17   275 sp|P54746|MNGB_ECOLI -            877   5.2e-44  150.5   0.0   1   1   2.2e-47   8.2e-44  149.9   0.0     2   260     7   261     6   273 0.89 Glycosyl hydrolases family 38 N-terminal domain
Glyco_hydro_38C      PF07748.8    457 sp|P54746|MNGB_ECOLI -            877     5e-28   98.1   0.0   1   1     2e-31   7.3e-28   97.5   0.0     2   416   386   843   385   868 0.76 Glycosyl hydrolases family 38 C-terminal domain
Alpha-mann_mid       PF09261.6     80 sp|P54746|MNGB_ECOLI -            877   8.8e-07   29.0   0.0   1   1   5.5e-10     2e-06   27.8   0.0     2    79   280   356   279   357 0.89 Alpha mannosidase, middle domain
AAA_18               PF13238.1    129 sp|P54746|MNGB_ECOLI -            877      0.01   16.1   0.2   1   1   9.9e-06     0.037   14.3   0.2    27    89     5    63     2    76 0.91 AAA domain
tRNA_Me_trans        PF03054.11   356 sp|P25745|MNMA_ECOLI -            368  1.6e-150  500.6   0.0   1   1  8.5e-154  1.8e-150  500.4   0.0     1   356     6   360     6   360 0.98 tRNA methyl transferase
NAD_synthase         PF02540.12   242 sp|P25745|MNMA_ECOLI -            368   1.4e-09   37.2   0.0   1   2   6.5e-11   1.4e-07   30.6   0.0    17    82     4    75     1    95 0.78 NAD synthase
Asn_synthase         PF00733.16   255 sp|P25745|MNMA_ECOLI -            368   2.6e-06   27.1   0.0   1   1   1.9e-09   4.1e-06   26.4   0.0    18    92     6    87     2   162 0.90 Asparagine synthase
ThiI                 PF02568.9    197 sp|P25745|MNMA_ECOLI -            368   3.9e-06   26.4   0.0   1   1   2.7e-09   5.7e-06   25.9   0.0     2    73     4    75     3   129 0.73 Thiamine biosynthesis protein (ThiI)
QueC                 PF06508.8    210 sp|P25745|MNMA_ECOLI -            368   0.00046   19.5   0.0   1   1   8.1e-07    0.0017   17.6   0.0     1    65     7    73     7   208 0.63 Queuosine biosynthesis protein QueC
ATP_bind_3           PF01171.15   182 sp|P25745|MNMA_ECOLI -            368     0.056   12.9   0.2   1   1   8.9e-05      0.19   11.2   0.1     1    67     7    75     7   131 0.77 PP-loop family
ATP_bind_4           PF01902.12   219 sp|P25745|MNMA_ECOLI -            368      0.08   12.2   0.0   1   1   6.9e-05      0.15   11.4   0.0     2    74     7    82     6    91 0.84 ATP-binding region
Methyltransf_30      PF05430.6    124 sp|P77182|MNMC_ECOLI -            668   3.8e-51  171.9   0.0   1   1   2.5e-54   7.4e-51  171.0   0.0     1   123   118   244   118   245 0.98 S-adenosyl-L-methionine-dependent methyltransferase
DAO                  PF01266.19   358 sp|P77182|MNMC_ECOLI -            668   1.9e-46  158.6   0.2   1   1     3e-49     9e-46  156.4   0.2     2   357   267   632   266   633 0.87 FAD dependent oxidoreductase
NAD_binding_8        PF13450.1     68 sp|P77182|MNMC_ECOLI -            668   8.6e-05   22.4   0.2   1   2     9e-06     0.027   14.5   0.1     1    68   269   340   269   340 0.85 NAD(P)-binding Rossmann-like domain
TrmE_N               PF10396.4    114 sp|P25522|MNME_ECOLI -            454   2.8e-43  146.4   0.0   1   1   1.1e-45   8.2e-43  144.9   0.0     1   114     6   120     6   120 0.99 GTP-binding protein TrmE N-terminus
MMR_HSR1             PF01926.18   116 sp|P25522|MNME_ECOLI -            454   1.7e-23   82.7   0.0   1   1   4.5e-26   3.5e-23   81.7   0.0     1   116   218   336   218   336 0.79 50S ribosome-binding GTPase
GTPase_Cys_C         PF12631.2     73 sp|P25522|MNME_ECOLI -            454   1.2e-22   80.0   2.9   1   1   2.8e-25   2.2e-22   79.2   0.3     3    73   381   451   379   451 0.98 Catalytic cysteine-containing C-terminus of GTPase, MnmE
Miro                 PF08477.8    119 sp|P25522|MNME_ECOLI -            454   3.9e-11   43.4   0.0   1   1   1.5e-13   1.2e-10   41.9   0.0     1   119   218   338   218   338 0.85 Miro-like protein
FeoB_N               PF02421.13   156 sp|P25522|MNME_ECOLI -            454   3.2e-08   33.0   0.0   1   1   1.7e-10   1.4e-07   30.9   0.0     2    91   218   308   217   372 0.77 Ferrous iron transport protein B
Dynamin_N            PF00350.18   168 sp|P25522|MNME_ECOLI -            454   4.5e-05   23.3   0.0   1   2     8e-07   0.00063   19.6   0.0     1    35   219   254   219   262 0.83 Dynamin family
DUF258               PF03193.11   161 sp|P25522|MNME_ECOLI -            454   6.3e-05   22.2   0.0   1   1   2.3e-07   0.00018   20.7   0.0    34   120   214   296   193   299 0.80 Protein of unknown function, DUF258
Ras                  PF00071.17   162 sp|P25522|MNME_ECOLI -            454   0.00015   21.1   0.0   1   1   3.4e-07   0.00027   20.3   0.0     1   118   218   341   218   377 0.75 Ras family
AIG1                 PF04548.11   212 sp|P25522|MNME_ECOLI -            454   0.00027   20.1   0.0   1   1   6.1e-07   0.00048   19.3   0.0     2    70   218   285   217   310 0.86 AIG1 family
ABC_tran             PF00005.22   137 sp|P25522|MNME_ECOLI -            454   0.00091   19.5   0.0   1   1   2.6e-06     0.002   18.4   0.0     8    43   213   260   211   328 0.76 ABC transporter
AAA_28               PF13521.1    163 sp|P25522|MNME_ECOLI -            454    0.0014   18.6   0.0   1   1   3.7e-06    0.0029   17.5   0.0     1    80   218   305   218   311 0.62 AAA domain
AAA_17               PF13207.1    121 sp|P25522|MNME_ECOLI -            454    0.0026   18.5   0.1   1   1   1.7e-05     0.013   16.2   0.0     1    64   218   296   218   340 0.61 AAA domain
AAA_18               PF13238.1    129 sp|P25522|MNME_ECOLI -            454    0.0032   17.7   0.0   1   1   8.2e-06    0.0064   16.7   0.0     1    88   219   313   219   336 0.75 AAA domain
Arf                  PF00025.16   175 sp|P25522|MNME_ECOLI -            454    0.0063   15.7   0.0   1   1   1.8e-05     0.014   14.6   0.0    12   129   214   341   206   376 0.72 ADP-ribosylation factor family
AAA_25               PF13481.1    194 sp|P25522|MNME_ECOLI -            454     0.016   14.5   0.0   1   1   4.1e-05     0.032   13.6   0.0    28    58   211   241   178   307 0.86 AAA domain
SRPRB                PF09439.5    181 sp|P25522|MNME_ECOLI -            454     0.028   13.6   0.0   1   1   6.6e-05     0.051   12.7   0.0     5   123   218   338   214   342 0.66 Signal recognition particle receptor beta subunit
Gtr1_RagA            PF04670.7    232 sp|P25522|MNME_ECOLI -            454     0.041   13.0   0.0   1   1   0.00013       0.1   11.6   0.0     1    93   218   312   218   343 0.82 Gtr1/RagA G protein conserved region
Zeta_toxin           PF06414.7    201 sp|P25522|MNME_ECOLI -            454      0.05   12.7   0.0   1   1   0.00011     0.084   11.9   0.0    19    58   219   276   209   313 0.70 Zeta toxin
GIDA                 PF01134.17   392 sp|P0A6U3|MNMG_ECOLI -            629  5.5e-171  568.7   0.0   1   1  6.4e-174  7.2e-171  568.3   0.0     1   391     8   398     8   399 0.99 Glucose inhibited division protein A
GIDA_assoc_3         PF13932.1     72 sp|P0A6U3|MNMG_ECOLI -            629   4.3e-31  106.7   0.1   1   1   1.3e-33   1.5e-30  105.0   0.1     1    72   546   617   546   617 0.99 GidA associated domain 3
FAD_oxidored         PF12831.2    428 sp|P0A6U3|MNMG_ECOLI -            629   3.3e-08   33.0   4.1   1   1   6.3e-11   7.1e-08   31.9   4.1     1   142     8   151     8   152 0.72 FAD dependent oxidoreductase
FAD_binding_2        PF00890.19   417 sp|P0A6U3|MNMG_ECOLI -            629   5.8e-08   32.0   2.8   1   2   1.3e-07   0.00015   20.7   0.2     1    30     8    37     8    51 0.92 FAD binding domain
FAD_binding_2        PF00890.19   417 sp|P0A6U3|MNMG_ECOLI -            629   5.8e-08   32.0   2.8   2   2   9.6e-05      0.11   11.3   0.2   147   202   107   158    62   167 0.78 FAD binding domain
Pyr_redox_2          PF07992.9    201 sp|P0A6U3|MNMG_ECOLI -            629   3.3e-06   27.1   0.6   1   1     6e-09   6.8e-06   26.0   0.6     1   119     8   156     8   162 0.61 Pyridine nucleotide-disulphide oxidoreductase
DAO                  PF01266.19   358 sp|P0A6U3|MNMG_ECOLI -            629   4.6e-06   25.7   6.8   1   2   0.00012      0.14   11.0   0.1     1    29     8    36     8    48 0.90 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|P0A6U3|MNMG_ECOLI -            629   4.6e-06   25.7   6.8   2   2     7e-07    0.0008   18.4   0.2   139   203    94   159    59   166 0.78 FAD dependent oxidoreductase
HI0933_like          PF03486.9    409 sp|P0A6U3|MNMG_ECOLI -            629   5.7e-05   21.7   3.1   1   3     2e-06    0.0023   16.4   0.2     1    32     7    38     7    48 0.91 HI0933-like protein
Thi4                 PF01946.12   230 sp|P0A6U3|MNMG_ECOLI -            629     0.004   16.2   1.9   1   1   1.9e-05     0.022   13.8   1.8    19   137     8   142     5   149 0.71 Thi4 family
AlaDh_PNT_C          PF01262.16   168 sp|P0A6U3|MNMG_ECOLI -            629    0.0047   16.5   0.4   1   1   9.8e-06     0.011   15.2   0.0    20    58     6    44     4    50 0.88 Alanine dehydrogenase/PNT, C-terminal domain
Pyr_redox            PF00070.22    80 sp|P0A6U3|MNMG_ECOLI -            629    0.0062   16.9   0.3   1   1   1.7e-05     0.019   15.3   0.3     2    36     9    45     8    82 0.81 Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_9        PF13454.1    156 sp|P0A6U3|MNMG_ECOLI -            629      0.37   10.5   2.3   2   2   0.00063      0.72    9.6   0.2   105   155   105   157   100   158 0.82 FAD-NAD(P)-binding
Nramp                PF01566.13   358 sp|P0A769|MNTH_ECOLI -            412  1.7e-126  421.8  30.2   1   1  1.7e-130  2.5e-126  421.2  30.2     1   358    38   384    38   384 0.98 Natural resistance-associated macrophage protein
DUF204               PF02659.10    67 sp|P76264|MNTP_ECOLI -            188   7.2e-39  131.7  23.3   1   2     2e-24   1.5e-20   73.0   2.3     1    67    13    81    13    81 0.98 Domain of unknown function DUF
DUF204               PF02659.10    67 sp|P76264|MNTP_ECOLI -            188   7.2e-39  131.7  23.3   2   2   9.3e-22   6.9e-18   64.5  13.3     1    67   115   178   115   178 0.99 Domain of unknown function DUF
Mob_synth_C          PF06463.8    128 sp|P30745|MOAA_ECOLI -            329   6.9e-36  122.7   0.0   1   1   3.9e-39   1.2e-35  122.0   0.0     1   127   186   312   186   313 0.98 Molybdenum Cofactor Synthesis C
Radical_SAM          PF04055.16   166 sp|P30745|MOAA_ECOLI -            329   2.9e-27   95.8   0.0   1   1   1.3e-30   3.9e-27   95.4   0.0     2   166    19   181    18   181 0.97 Radical SAM superfamily
Fer4_12              PF13353.1    139 sp|P30745|MOAA_ECOLI -            329   1.7e-07   31.4   0.0   1   1   1.1e-10   3.2e-07   30.5   0.0    15   116    24   125    13   129 0.82 4Fe-4S single cluster domain
Fer4_14              PF13394.1    119 sp|P30745|MOAA_ECOLI -            329     7e-07   29.2   0.0   1   1   7.8e-10   2.3e-06   27.6   0.0     6    91    22   104    15   126 0.72 4Fe-4S single cluster domain
MoCF_biosynth        PF00994.19   144 sp|P0AEZ9|MOAB_ECOLI -            170     1e-30  106.0   0.0   1   1   8.7e-35   1.3e-30  105.7   0.0     1   143    14   156    10   157 0.92 Probable molybdopterin binding domain
MoaC                 PF01967.16   136 sp|P0A738|MOAC_ECOLI -            161   1.6e-60  202.6   1.3   1   1   1.3e-64   1.9e-60  202.4   1.3     1   136    15   150    15   150 1.00 MoaC family
ThiS                 PF02597.15    77 sp|P30748|MOAD_ECOLI -             81   5.5e-22   77.9   0.0   1   1   1.2e-25   6.1e-22   77.8   0.0     1    77     4    81     4    81 0.99 ThiS family
TGS                  PF02824.16    60 sp|P30748|MOAD_ECOLI -             81     0.024   14.4   0.0   1   1   7.6e-06     0.037   13.8   0.0    35    57    51    73    45    75 0.88 TGS domain
Ub-Mut7C             PF14451.1     81 sp|P30748|MOAD_ECOLI -             81     0.036   13.5   0.0   2   2   1.9e-05     0.095   12.2   0.0    53    75    54    76    50    79 0.91 Mut7-C ubiquitin
MoaE                 PF02391.12   117 sp|P30749|MOAE_ECOLI -            150   3.6e-40  136.3   0.0   1   1   2.9e-44   4.3e-40  136.1   0.0     2   116     6   121     5   122 0.97 MoaE protein
NTP_transf_3         PF12804.2    160 sp|P32173|MOBA_ECOLI -            194   1.5e-35  122.6   0.3   1   1   3.9e-39   1.9e-35  122.2   0.3     1   155     9   159     9   168 0.89 MobA-like NTP transferase domain
IspD                 PF01128.14   221 sp|P32173|MOBA_ECOLI -            194    0.0014   18.1   0.3   1   2   2.8e-06     0.014   14.9   0.1     3    55     9    58     7    72 0.82 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Abhydrolase_4        PF08386.5    103 sp|P32173|MOBA_ECOLI -            194    0.0078   16.0   0.0   2   2   5.8e-06     0.029   14.2   0.0    46    96   103   155   100   158 0.89 TAP-like protein
MobB                 PF03205.9    140 sp|P32125|MOBB_ECOLI -            175   1.9e-36  124.8   0.0   1   1   8.8e-40   2.2e-36  124.6   0.0     1   120     8   129     8   157 0.93 Molybdopterin guanine dinucleotide synthesis protein B
cobW                 PF02492.14   178 sp|P32125|MOBB_ECOLI -            175     0.011   15.1   0.0   1   1   9.8e-06     0.024   14.0   0.0     5    44    12    52     8   164 0.82 CobW/HypB/UreG, nucleotide-binding domain
LpxK                 PF02606.9    326 sp|P32125|MOBB_ECOLI -            175     0.016   14.1   0.2   1   1   8.6e-06     0.021   13.7   0.2    45    77    15    47    13   128 0.82 Tetraacyldisaccharide-1-P 4'-kinase
AAA_16               PF13191.1    185 sp|P32125|MOBB_ECOLI -            175     0.019   14.9   0.0   1   1   9.2e-06     0.023   14.7   0.0    33    88    16    74     7   145 0.75 AAA ATPase domain
AAA_22               PF13401.1    131 sp|P32125|MOBB_ECOLI -            175     0.022   14.9   0.1   1   1   1.4e-05     0.035   14.2   0.1     7    37    10    42     6   112 0.68 AAA domain
AAA_17               PF13207.1    121 sp|P32125|MOBB_ECOLI -            175      0.09   13.6   0.5   1   1   0.00011      0.27   12.0   0.4     8    85    16   110    15   145 0.47 AAA domain
SBP_bac_11           PF13531.1    230 sp|P37329|MODA_ECOLI -            257     1e-55  188.9   4.8   1   1   3.2e-59   1.2e-55  188.6   4.8     1   230    29   255    29   255 0.95 Bacterial extracellular solute-binding protein
SBP_bac_1            PF01547.20   315 sp|P37329|MODA_ECOLI -            257   3.5e-17   63.1   6.9   1   1   1.2e-20   4.5e-17   62.7   6.9     1   314    34   246    34   247 0.88 Bacterial extracellular solute-binding protein
SBP_bac_6            PF13343.1    242 sp|P37329|MODA_ECOLI -            257   0.00029   20.2   1.3   2   2   7.3e-06     0.027   13.7   0.0   119   211   165   254   144   256 0.86 Bacterial extracellular solute-binding protein
SBP_bac_8            PF13416.1    281 sp|P37329|MODA_ECOLI -            257     0.011   15.4   1.6   1   2     2e-05     0.076   12.7   0.8     2    64    44   101    43   167 0.70 Bacterial extracellular solute-binding protein
BPD_transp_1         PF00528.17   185 sp|P0AF01|MODB_ECOLI -            229   4.3e-22   78.5  13.4   1   1   7.3e-26   5.4e-22   78.1  13.4     2   175    26   215    25   227 0.78 Binding-protein-dependent transport system inner membrane component
EMP70                PF02990.11   521 sp|P0AF01|MODB_ECOLI -            229      0.53    8.6   5.1   1   1   8.2e-05      0.61    8.4   5.1   304   450    62   221    12   223 0.76 Endomembrane protein 70
ABC_tran             PF00005.22   137 sp|P09833|MODC_ECOLI -            352     1e-31  110.0   0.0   1   1   1.9e-34   1.8e-31  109.2   0.0     4   136    17   156    15   157 0.96 ABC transporter
TOBE                 PF03459.12    64 sp|P09833|MODC_ECOLI -            352   3.8e-19   68.5   0.0   2   2   1.1e-19     1e-16   60.7   0.0     1    62   290   350   290   352 0.97 TOBE domain
AAA_21               PF13304.1    303 sp|P09833|MODC_ECOLI -            352   6.1e-09   36.2   1.9   1   2   4.6e-06    0.0043   17.0   0.3     1    25    26    54    26    99 0.78 AAA domain
AAA_21               PF13304.1    303 sp|P09833|MODC_ECOLI -            352   6.1e-09   36.2   1.9   2   2   9.9e-07   0.00092   19.2   0.1   234   301   126   192    66   194 0.80 AAA domain
AAA_15               PF13175.1    415 sp|P09833|MODC_ECOLI -            352   5.6e-06   25.6   0.0   1   2   0.00047      0.43    9.5   0.0    22    43    19    54     2    88 0.75 AAA ATPase domain
AAA_15               PF13175.1    415 sp|P09833|MODC_ECOLI -            352   5.6e-06   25.6   0.0   2   2   1.9e-05     0.017   14.1   0.0   372   411   149   188   133   189 0.91 AAA ATPase domain
AAA_10               PF12846.2    304 sp|P09833|MODC_ECOLI -            352   8.6e-05   22.1   0.1   1   2   0.00038      0.35   10.2   0.2     1    23    24    46    24    57 0.81 AAA-like domain
AAA_10               PF12846.2    304 sp|P09833|MODC_ECOLI -            352   8.6e-05   22.1   0.1   2   2   0.00056      0.52    9.7   0.0   217   288   143   214   104   216 0.89 AAA-like domain
AAA_23               PF13476.1    202 sp|P09833|MODC_ECOLI -            352   9.7e-05   22.7   0.1   1   1   1.7e-07   0.00016   22.0   0.1    18    43    23    48     3    83 0.83 AAA domain
AAA_29               PF13555.1     62 sp|P09833|MODC_ECOLI -            352   0.00032   20.1   0.1   1   1   7.5e-07    0.0007   19.0   0.1    21    56    23    58    11    61 0.84 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|P09833|MODC_ECOLI -            352   0.00071   18.8   0.1   1   1   1.3e-06    0.0012   18.0   0.1    26    60    14    49     3    68 0.80 Protein of unknown function, DUF258
SMC_N                PF02463.14   220 sp|P09833|MODC_ECOLI -            352    0.0011   18.2   0.1   1   1   2.2e-05      0.02   14.1   0.1    23   189    23   177    16   208 0.70 RecF/RecN/SMC N terminal domain
AAA_22               PF13401.1    131 sp|P09833|MODC_ECOLI -            352    0.0094   16.0   0.5   1   2    0.0004      0.37   10.9   0.1     4    23    24    43    20    59 0.91 AAA domain
AAA_16               PF13191.1    185 sp|P09833|MODC_ECOLI -            352      0.02   14.8   0.3   1   1   4.3e-05      0.04   13.9   0.1    25    63    25    64    13   185 0.88 AAA ATPase domain
MMR_HSR1             PF01926.18   116 sp|P09833|MODC_ECOLI -            352     0.023   14.6   0.0   1   1   4.8e-05     0.045   13.7   0.0     3    21    28    46    26    94 0.84 50S ribosome-binding GTPase
SbcCD_C              PF13558.1     90 sp|P09833|MODC_ECOLI -            352     0.039   13.8   0.0   1   1   0.00088      0.81    9.6   0.0    28    88   124   171    91   173 0.71 Putative exonuclease SbcCD, C subunit
Miro                 PF08477.8    119 sp|P09833|MODC_ECOLI -            352     0.084   13.3   0.0   1   1   0.00018      0.17   12.3   0.0     3    25    28    50    27    74 0.86 Miro-like protein
AAA_30               PF13604.1    196 sp|P09833|MODC_ECOLI -            352      0.16   11.5   0.0   1   1   0.00037      0.34   10.4   0.0    19    50    25    56    17    66 0.86 AAA domain
TOBE                 PF03459.12    64 sp|P0A9G8|MODE_ECOLI -            262   2.5e-30  104.3   0.2   1   2   5.1e-19   1.9e-15   56.6   0.1     1    63   125   188   125   189 0.98 TOBE domain
TOBE                 PF03459.12    64 sp|P0A9G8|MODE_ECOLI -            262   2.5e-30  104.3   0.2   2   2   1.5e-15   5.7e-12   45.5   0.0     3    64   199   258   197   258 0.97 TOBE domain
HTH_1                PF00126.22    60 sp|P0A9G8|MODE_ECOLI -            262   6.2e-07   29.0   0.0   1   1   3.1e-10   1.2e-06   28.1   0.0     2    60    20    83    19    83 0.89 Bacterial regulatory helix-turn-helix protein, lysR family
TOBE_2               PF08402.5     75 sp|P0A9G8|MODE_ECOLI -            262    0.0012   18.7   0.1   2   2   3.1e-06     0.012   15.6   0.0    13    73   198   257   187   259 0.89 TOBE domain
ABC_tran             PF00005.22   137 sp|P31060|MODF_ECOLI -            490   3.8e-47  160.0   0.0   1   2   1.4e-20   6.4e-18   65.3   0.0     5   136    23   163    19   164 0.77 ABC transporter
ABC_tran             PF00005.22   137 sp|P31060|MODF_ECOLI -            490   3.8e-47  160.0   0.0   2   2     5e-29   2.3e-26   92.7   0.0     1   136   276   429   276   430 0.91 ABC transporter
AAA_21               PF13304.1    303 sp|P31060|MODF_ECOLI -            490   8.1e-20   71.9   9.6   1   3   5.2e-05     0.024   14.6   0.2     3    22    33    52    33   106 0.80 AAA domain
AAA_21               PF13304.1    303 sp|P31060|MODF_ECOLI -            490   8.1e-20   71.9   9.6   2   3   0.00015     0.069   13.0   0.1   236   294   135   190   122   191 0.84 AAA domain
AAA_21               PF13304.1    303 sp|P31060|MODF_ECOLI -            490   8.1e-20   71.9   9.6   3   3   5.5e-14   2.5e-11   44.0   1.9     4   298   291   461   291   463 0.83 AAA domain
AAA_22               PF13401.1    131 sp|P31060|MODF_ECOLI -            490   2.2e-08   34.3   1.3   1   2   0.00028      0.12   12.4   0.4     8   123    33   192    27   197 0.64 AAA domain
AAA_22               PF13401.1    131 sp|P31060|MODF_ECOLI -            490   2.2e-08   34.3   1.3   2   2     2e-05     0.009   16.1   0.0     8   122   290   458   285   465 0.79 AAA domain
AAA_29               PF13555.1     62 sp|P31060|MODF_ECOLI -            490   9.2e-08   31.5   0.1   1   2   0.00016     0.072   12.6   0.0    22    43    28    49    15    64 0.84 P-loop containing region of AAA domain
AAA_29               PF13555.1     62 sp|P31060|MODF_ECOLI -            490   9.2e-08   31.5   0.1   2   2   1.2e-05    0.0052   16.2   0.0    16    40   280   303   275   313 0.83 P-loop containing region of AAA domain
SMC_N                PF02463.14   220 sp|P31060|MODF_ECOLI -            490   1.9e-07   30.5   3.9   1   3   0.00048      0.22   10.7   0.6    28    45    33    50    10   195 0.78 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|P31060|MODF_ECOLI -            490   1.9e-07   30.5   3.9   2   3   0.00077      0.34   10.0   0.0    26    41   288   303   260   307 0.69 RecF/RecN/SMC N terminal domain
AAA_33               PF13671.1    143 sp|P31060|MODF_ECOLI -            490   6.8e-06   26.0   0.0   1   2   3.1e-05     0.014   15.2   0.0     3    38    33    71    32   131 0.81 AAA domain
AAA_23               PF13476.1    202 sp|P31060|MODF_ECOLI -            490   9.5e-06   26.0   0.3   2   2   7.3e-05     0.033   14.5   0.0    24    37   291   304   290   385 0.92 AAA domain
SbcCD_C              PF13558.1     90 sp|P31060|MODF_ECOLI -            490   1.8e-05   24.5   0.1   1   2     6e-05     0.027   14.3   0.1    62    87   152   177   115   180 0.69 Putative exonuclease SbcCD, C subunit
DUF258               PF03193.11   161 sp|P31060|MODF_ECOLI -            490   2.8e-05   23.3   0.1   1   2    0.0015      0.66    9.1   0.0    36    61    30    55     7   103 0.81 Protein of unknown function, DUF258
DUF258               PF03193.11   161 sp|P31060|MODF_ECOLI -            490   2.8e-05   23.3   0.1   2   2   0.00019     0.084   12.0   0.0    24    60   274   335   261   387 0.71 Protein of unknown function, DUF258
AAA_17               PF13207.1    121 sp|P31060|MODF_ECOLI -            490   5.2e-05   24.0   0.3   1   2   0.00037      0.17   12.7   0.0     3    24    33    63    32   207 0.71 AAA domain
AAA_25               PF13481.1    194 sp|P31060|MODF_ECOLI -            490   6.1e-05   22.5   0.5   1   3    0.0021      0.96    8.8   0.2    31    57    27    53    14   192 0.72 AAA domain
AAA                  PF00004.24   132 sp|P31060|MODF_ECOLI -            490   0.00029   21.0   0.1   1   2   0.00014     0.064   13.4   0.0     3    34    34    75    32   206 0.80 ATPase family associated with various cellular activities (AAA)
AAA_10               PF12846.2    304 sp|P31060|MODF_ECOLI -            490   0.00048   19.6   0.4   2   2    0.0013      0.59    9.5   0.1     3    21   288   306   286   321 0.87 AAA-like domain
Miro                 PF08477.8    119 sp|P31060|MODF_ECOLI -            490   0.00051   20.5   0.0   2   2    0.0021      0.94    9.9   0.0     4    49   291   336   288   351 0.76 Miro-like protein
AAA_14               PF13173.1    128 sp|P31060|MODF_ECOLI -            490     0.001   19.0   0.0   1   2    0.0015      0.69    9.8   0.0     8   102    35   145    29   153 0.71 AAA domain
Mg_chelatase         PF01078.16   207 sp|P31060|MODF_ECOLI -            490     0.001   18.2   0.0   1   2   6.8e-05     0.031   13.4   0.0    25    67    32    74    19    87 0.83 Magnesium chelatase, subunit ChlI
NACHT                PF05729.7    166 sp|P31060|MODF_ECOLI -            490    0.0011   18.6   2.4   1   2    0.0013       0.6    9.7   0.0     5    31    34    60    30    90 0.74 NACHT domain
AAA_16               PF13191.1    185 sp|P31060|MODF_ECOLI -            490    0.0022   18.0  16.0   1   4   6.2e-05     0.028   14.4   1.7    25   184    30   188    20   199 0.58 AAA ATPase domain
FtsK_SpoIIIE         PF01580.13   205 sp|P31060|MODF_ECOLI -            490    0.0031   17.0   0.0   2   2    0.0016      0.71    9.3   0.0    27    55   275   303   257   307 0.86 FtsK/SpoIIIE family
Dynamin_N            PF00350.18   168 sp|P31060|MODF_ECOLI -            490    0.0056   16.5   0.0   1   2    0.0011      0.49   10.1   0.0     2    45    33    77    33   193 0.70 Dynamin family
DUF3584              PF12128.3   1201 sp|P31060|MODF_ECOLI -            490     0.017   12.5   0.0   2   2   0.00017     0.076   10.3   0.0    14    37   283   306   280   307 0.92 Protein of unknown function (DUF3584)
MoeA_N               PF03453.12   162 sp|P12281|MOEA_ECOLI -            411   6.9e-57  191.3   0.0   1   1   1.9e-60   9.5e-57  190.8   0.0     1   162     7   168     7   168 0.99 MoeA N-terminal region (domain I and II)
MoCF_biosynth        PF00994.19   144 sp|P12281|MOEA_ECOLI -            411   4.7e-31  107.1   0.0   1   1   1.3e-34   6.7e-31  106.6   0.0     2   143   182   317   181   318 0.95 Probable molybdopterin binding domain
MoeA_C               PF03454.10    72 sp|P12281|MOEA_ECOLI -            411     2e-21   75.7   0.1   2   2   1.2e-24     6e-21   74.1   0.0     1    72   332   404   332   404 0.98 MoeA C-terminal region (domain IV)
ThiF                 PF00899.16   136 sp|P12282|MOEB_ECOLI -            249   4.1e-44  149.7   0.1   1   1     3e-47   7.4e-44  148.8   0.1     1   135    30   163    30   164 0.98 ThiF family
MoeZ_MoeB            PF05237.8     84 sp|P12282|MOEB_ECOLI -            249   1.2e-27   95.2   0.8   1   1   9.7e-31   2.4e-27   94.3   0.8     2    82   169   249   168   249 0.97 MoeZ/MoeB domain
Saccharop_dh         PF03435.13   386 sp|P12282|MOEB_ECOLI -            249   0.00084   18.4   0.7   1   1   7.8e-07    0.0019   17.2   0.7     1    96    34   151    34   168 0.85 Saccharopine dehydrogenase
NAD_binding_7        PF13241.1    103 sp|P12282|MOEB_ECOLI -            249    0.0028   17.8   0.0   1   1   2.3e-06    0.0058   16.8   0.0     5    87    29   148    28   163 0.71 Putative NAD(P)-binding
Shikimate_DH         PF01488.15   135 sp|P12282|MOEB_ECOLI -            249     0.013   15.5   0.1   1   1   1.3e-05     0.033   14.2   0.1     9    54    28    73    24   131 0.80 Shikimate / quinate 5-dehydrogenase
FAD_binding_3        PF01494.14   356 sp|P12282|MOEB_ECOLI -            249     0.073   12.1   0.1   1   1   4.2e-05       0.1   11.6   0.1     3    29    33    59    31    81 0.85 FAD binding domain
MoCF_biosynth        PF00994.19   144 sp|P0AF03|MOG_ECOLI  -            195   1.2e-27   96.1   0.0   1   1     1e-31   1.5e-27   95.7   0.0     2   138     8   147     7   150 0.88 Probable molybdopterin binding domain
HOK_GEF              PF01848.11    43 sp|P33236|MOKC_ECOLI -             69   4.6e-19   67.4   3.3   1   1   7.4e-23   5.5e-19   67.2   3.3     1    43    24    66    24    66 0.98 Hok/gef family
TMEM223              PF14640.1    170 sp|P33236|MOKC_ECOLI -             69     0.061   13.2   0.1   1   1   9.4e-06     0.069   13.0   0.1    58   107    17    65     5    68 0.71 Transmembrane protein 223
MotB_plug            PF13677.1     58 sp|P0AF06|MOTB_ECOLI -            308   1.6e-23   81.7   0.6   1   1     4e-27     3e-23   80.9   0.6     3    57    12    66    10    67 0.88 Membrane MotB of proton-channel complex MotA/MotB
OmpA                 PF00691.15    97 sp|P0AF06|MOTB_ECOLI -            308   3.2e-11   43.4   0.0   1   1   9.6e-15   7.1e-11   42.3   0.0     1    95   160   258   160   259 0.86 OmpA family
MotA_ExbB            PF01618.11   139 sp|P09348|MOTA_ECOLI -            295   6.9e-06   25.7   0.8   1   1   1.9e-09   6.9e-06   25.7   0.8    29   135   136   239   116   242 0.88 MotA/TolQ/ExbB proton channel family
DUF1129              PF06570.6    206 sp|P09348|MOTA_ECOLI -            295     0.055   12.7   0.0   1   1   2.9e-05      0.11   11.8   0.0    68   147   152   238   136   252 0.63 Protein of unknown function (DUF1129)
YopD                 PF05844.7    298 sp|P09348|MOTA_ECOLI -            295     0.062   12.3   0.5   1   1   4.4e-05      0.16   10.9   0.3    76   101    76   103    66   109 0.89 YopD protein
SpoVAB               PF13782.1    110 sp|P09348|MOTA_ECOLI -            295       1.1    9.3   8.4   1   2   9.6e-05      0.35   10.8   1.9    25    95     7    80     1    88 0.79 Stage V sporulation protein AB
Hydrolase_3          PF08282.7    254 sp|P76329|MPGP_ECOLI -            271   4.2e-15   56.0   0.0   1   1   6.1e-17   1.5e-13   50.9   0.0     1   229    10   233    10   241 0.72 haloacid dehalogenase-like hydrolase
S6PP                 PF05116.8    247 sp|P76329|MPGP_ECOLI -            271   6.6e-08   32.1   0.0   1   1   4.8e-09   1.2e-05   24.7   0.0   116   245   141   267     6   268 0.60 Sucrose-6F-phosphate phosphohydrolase
HAD                  PF12710.2    192 sp|P76329|MPGP_ECOLI -            271   0.00041   20.5   0.1   1   1   1.5e-06    0.0038   17.4   0.1     1   192    10   223    10   223 0.55 haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P76329|MPGP_ECOLI -            271     0.011   16.1   0.0   1   1   4.2e-05       0.1   12.9   0.0     4   212    10   223     8   226 0.55 haloacid dehalogenase-like hydrolase
Hydrolase_6          PF13344.1    101 sp|P76329|MPGP_ECOLI -            271     0.011   15.5   0.0   1   2   1.7e-05     0.042   13.7   0.0     1    45    10    55    10    80 0.78 Haloacid dehalogenase-like hydrolase
Trehalose_PPase      PF02358.11   235 sp|P76329|MPGP_ECOLI -            271     0.035   13.0   0.0   1   1   2.8e-05      0.07   12.0   0.0     2    80    12   109    11   226 0.71 Trehalose-phosphatase
Mur_ligase_M         PF08245.7    188 sp|P37773|MPL_ECOLI  -            457   4.6e-17   62.6   0.0   1   1   1.3e-20   6.5e-17   62.1   0.0     1   188   108   291   108   291 0.78 Mur ligase middle domain
Mur_ligase           PF01225.20    83 sp|P37773|MPL_ECOLI  -            457   1.4e-14   53.8   0.0   1   1   6.6e-18   3.3e-14   52.7   0.0     1    80     2   100     2   103 0.96 Mur ligase family, catalytic domain
Mur_ligase_C         PF02875.16    91 sp|P37773|MPL_ECOLI  -            457   1.6e-10   40.8   0.0   1   1   1.3e-13   6.6e-10   38.9   0.0     2    50   312   361   311   390 0.83 Mur ligase family, glutamate ligase domain
SBP_bac_5            PF00496.17   374 sp|P77348|MPPA_ECOLI -            537   9.7e-87  291.2  12.3   1   1   9.3e-91   1.4e-86  290.7  12.3     1   368    77   452    77   457 0.95 Bacterial extracellular solute-binding proteins, family 5 Middle
Mqo                  PF06039.10   489 sp|P33940|MQO_ECOLI  -            548  6.4e-251  832.6   0.1   1   1    3e-254  7.4e-251  832.4   0.1     2   489    29   518    28   518 0.99 Malate:quinone oxidoreductase (Mqo)
DAO                  PF01266.19   358 sp|P33940|MQO_ECOLI  -            548   1.9e-11   43.5   0.1   1   1     1e-14   2.6e-11   43.0   0.1     1   317    33   423    33   463 0.75 FAD dependent oxidoreductase
FAD_binding_3        PF01494.14   356 sp|P33940|MQO_ECOLI  -            548   9.7e-05   21.5   0.0   2   2   2.6e-06    0.0064   15.5   0.0    94   180   193   281   150   331 0.79 FAD binding domain
FAD_binding_2        PF00890.19   417 sp|P33940|MQO_ECOLI  -            548     0.027   13.3   0.0   1   1   1.9e-05     0.047   12.5   0.0   128   208   195   277   145   292 0.74 FAD binding domain
K_oxygenase          PF13434.1    341 sp|P33940|MQO_ECOLI  -            548      0.06   12.2   0.1   2   2    0.0003      0.75    8.6   0.0   288   338   219   269   184   273 0.70 L-lysine 6-monooxygenase (NADPH-requiring)
Glycos_transf_4      PF00953.16   159 sp|P0A6W3|MRAY_ECOLI -            360   5.7e-34  117.2  16.1   2   2   1.1e-37   5.7e-34  117.2  16.1     2   158    99   284    98   285 0.91 Glycosyl transferase family 4
MraY_sig1            PF10555.4     13 sp|P0A6W3|MRAY_ECOLI -            360   0.00012   21.0   3.6   1   2   2.5e-08   0.00012   21.0   3.6     1    13    68    80    68    80 0.95 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
MraZ                 PF02381.13    72 sp|P22186|MRAZ_ECOLI -            152   8.7e-48  159.9   0.0   1   2   4.8e-29   7.1e-25   86.5   0.0     1    71     1    75     1    76 0.98 MraZ protein
MraZ                 PF02381.13    72 sp|P22186|MRAZ_ECOLI -            152   8.7e-48  159.9   0.0   2   2     2e-24     3e-20   71.7   0.0     1    59    77   135    77   146 0.92 MraZ protein
MreC                 PF04085.9    152 sp|P16926|MREC_ECOLI -            367   1.1e-47  161.2   0.3   1   1   1.1e-51   1.6e-47  160.7   0.3     1   150   122   270   122   272 0.99 rod shape-determining protein MreC
MreB_Mbl             PF06723.8    327 sp|P0A9X4|MREB_ECOLI -            347    1e-150  500.8   3.4   1   1  7.8e-154  1.3e-150  500.5   3.4     2   324    11   338    10   340 0.99 MreB/Mbl protein
HSP70                PF00012.15   602 sp|P0A9X4|MREB_ECOLI -            347   3.4e-13   48.4   0.2   2   2   4.5e-16   7.4e-13   47.2   0.0   136   241   108   207    84   221 0.86 Hsp70 protein
Actin                PF00022.14   393 sp|P0A9X4|MREB_ECOLI -            347   8.7e-11   40.8   0.0   1   2   3.3e-10   5.4e-07   28.3   0.0    45   211    52   226    13   245 0.79 Actin
Actin                PF00022.14   393 sp|P0A9X4|MREB_ECOLI -            347   8.7e-11   40.8   0.0   2   2   8.6e-05      0.14   10.5   0.0   286   330   262   306   235   312 0.83 Actin
PilM_2               PF11104.3    340 sp|P0A9X4|MREB_ECOLI -            347   5.2e-10   38.7   0.0   1   1   7.1e-13   1.2e-09   37.5   0.0   174   306   154   319   137   334 0.86 Type IV pilus assembly protein PilM;
FtsA                 PF14450.1    120 sp|P0A9X4|MREB_ECOLI -            347   1.2e-08   34.8   0.2   1   1   2.7e-11   4.5e-08   32.9   0.1     2    98   162   319   161   328 0.92 Cell division protein FtsA
DDR                  PF08841.5    332 sp|P0A9X4|MREB_ECOLI -            347   0.00031   19.6   0.4   1   2   3.5e-06    0.0058   15.4   0.1    97   162   123   187    74   222 0.74 Diol dehydratase reactivase ATPase-like domain
Ppx-GppA             PF02541.11   285 sp|P0A9X4|MREB_ECOLI -            347   0.00051   19.3   0.1   1   1   5.5e-07   0.00091   18.5   0.1   111   152   158   199   142   242 0.84 Ppx/GppA phosphatase family
EutA                 PF06277.6    473 sp|P0A9X4|MREB_ECOLI -            347   0.00059   18.5   0.5   1   1   5.8e-07   0.00096   17.8   0.5   125   201   144   214   141   245 0.74 Ethanolamine utilisation protein EutA
Hydantoinase_A       PF01968.13   290 sp|P0A9X4|MREB_ECOLI -            347     0.018   14.1   0.8   1   2   2.4e-05     0.039   13.0   0.4    62   109   144   190   118   203 0.85 Hydantoinase/oxoprolinase
MreD                 PF04093.7    160 sp|P0ABH4|MRED_ECOLI -            162   1.3e-46  158.3  22.1   1   1     1e-50   1.5e-46  158.1  22.1     2   160     5   155     4   155 0.99 rod shape-determining protein MreD
ParA                 PF10609.4     81 sp|P0AF08|MRP_ECOLI  -            369   3.2e-36  123.0   0.4   1   1     6e-39   6.4e-36  122.1   0.4     1    81   216   296   216   296 0.99 ParA/MinD ATPase like
CbiA                 PF01656.18   195 sp|P0AF08|MRP_ECOLI  -            369   5.3e-18   65.1   0.1   1   1   8.1e-21   8.6e-18   64.4   0.1     1   157   110   278   110   281 0.76 CobQ/CobB/MinD/ParA nucleotide binding domain
AAA_31               PF13614.1    157 sp|P0AF08|MRP_ECOLI  -            369   1.1e-10   41.6   0.0   1   1   1.4e-12   1.5e-09   37.9   0.0     1    53   108   160   108   237 0.79 AAA domain
MipZ                 PF09140.6    261 sp|P0AF08|MRP_ECOLI  -            369     2e-08   33.6   0.0   1   1   3.6e-11   3.8e-08   32.7   0.0     2   117   109   235   108   263 0.68 ATPase MipZ
Fer4_NifH            PF00142.13   273 sp|P0AF08|MRP_ECOLI  -            369     7e-08   31.9   0.0   1   2   4.1e-07   0.00043   19.5   0.0     6    51   114   159   108   164 0.83 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
Fer4_NifH            PF00142.13   273 sp|P0AF08|MRP_ECOLI  -            369     7e-08   31.9   0.0   2   2   0.00025      0.27   10.4   0.0   192   258   296   365   244   369 0.85 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
ArsA_ATPase          PF02374.10   305 sp|P0AF08|MRP_ECOLI  -            369   0.00072   18.6   3.0   1   2   1.1e-06    0.0011   18.0   0.7     6    38   113   145   107   147 0.87 Anion-transporting ATPase
VirC1                PF07015.6    231 sp|P0AF08|MRP_ECOLI  -            369    0.0046   16.0   0.0   1   1   8.3e-06    0.0088   15.1   0.0     2    40   108   146   107   152 0.93 VirC1 protein
AAA_10               PF12846.2    304 sp|P0AF08|MRP_ECOLI  -            369     0.018   14.4   0.0   1   1   2.7e-05     0.028   13.8   0.0     7    67   114   175   109   219 0.73 AAA-like domain
DUF59                PF01883.14    72 sp|P0AF08|MRP_ECOLI  -            369     0.033   14.1   0.0   1   1   6.5e-05     0.069   13.1   0.0     2    67    15    80    14    85 0.92 Domain of unknown function DUF59
AAA_25               PF13481.1    194 sp|P0AF08|MRP_ECOLI  -            369     0.034   13.5   0.0   1   1     7e-05     0.074   12.4   0.0    36    60   111   136    98   194 0.85 AAA domain
ArgK                 PF03308.11   267 sp|P0AF08|MRP_ECOLI  -            369     0.079   11.7   0.3   1   1   0.00012      0.13   11.0   0.3    32    66   110   145    87   158 0.81 ArgK protein
SRP54                PF00448.17   196 sp|P0AF08|MRP_ECOLI  -            369      0.12   11.7   0.1   1   1   0.00025      0.27   10.6   0.1     7    41   114   148   107   156 0.90 SRP54-type protein, GTPase domain
ABC_membrane         PF00664.18   275 sp|P60752|MSBA_ECOLI -            582   1.8e-55  188.3  14.5   1   1   3.7e-58   2.5e-55  187.8  14.5     3   275    29   298    24   298 0.93 ABC transporter transmembrane region
ABC_tran             PF00005.22   137 sp|P60752|MSBA_ECOLI -            582   2.4e-36  125.0   0.1   1   1   2.1e-38   1.4e-35  122.5   0.0     1   137   359   509   359   509 0.87 ABC transporter
SMC_N                PF02463.14   220 sp|P60752|MSBA_ECOLI -            582   8.8e-10   38.1   5.5   1   1   1.4e-12   9.4e-10   38.0   3.1    26   211   371   551   357   556 0.84 RecF/RecN/SMC N terminal domain
AAA_21               PF13304.1    303 sp|P60752|MSBA_ECOLI -            582   1.6e-06   28.3   0.2   1   2   0.00048      0.32   10.8   0.1     3    25   373   397   371   431 0.78 AAA domain
AAA_21               PF13304.1    303 sp|P60752|MSBA_ECOLI -            582   1.6e-06   28.3   0.2   2   2   2.1e-05     0.014   15.3   0.0   236   292   480   533   423   536 0.75 AAA domain
DEAD                 PF00270.24   169 sp|P60752|MSBA_ECOLI -            582   6.7e-05   22.4   0.3   2   2   9.3e-07   0.00063   19.2   0.1    13   150   368   529   359   542 0.77 DEAD/DEAH box helicase
AAA_17               PF13207.1    121 sp|P60752|MSBA_ECOLI -            582   0.00032   21.5   0.2   1   1   1.6e-06    0.0011   19.7   0.2     2    40   372   413   371   567 0.76 AAA domain
AAA_22               PF13401.1    131 sp|P60752|MSBA_ECOLI -            582   0.00049   20.2   0.5   1   1   8.9e-06     0.006   16.7   0.5     7   115   372   529   368   542 0.71 AAA domain
AAA_29               PF13555.1     62 sp|P60752|MSBA_ECOLI -            582   0.00052   19.4   0.1   1   1   2.7e-06    0.0018   17.7   0.1    21    39   367   385   359   391 0.86 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|P60752|MSBA_ECOLI -            582   0.00062   19.8   0.2   1   1   2.1e-06    0.0014   18.6   0.2    23   180   368   529   358   536 0.63 AAA ATPase domain
Zeta_toxin           PF06414.7    201 sp|P60752|MSBA_ECOLI -            582    0.0029   16.7   0.2   1   1     2e-05     0.014   14.5   0.0    17    58   370   423   365   462 0.72 Zeta toxin
DUF258               PF03193.11   161 sp|P60752|MSBA_ECOLI -            582    0.0048   16.1   0.0   1   1   2.3e-05     0.016   14.4   0.0    32    66   365   400   342   422 0.82 Protein of unknown function, DUF258
DUF2075              PF09848.4    352 sp|P60752|MSBA_ECOLI -            582    0.0064   15.5   0.1   1   1   1.6e-05     0.011   14.7   0.1     7   121   375   534   370   538 0.74 Uncharacterized conserved protein (DUF2075)
DUF87                PF01935.12   229 sp|P60752|MSBA_ECOLI -            582     0.012   15.4   1.4   1   1   4.2e-05     0.028   14.2   0.3    25    80   371   430   360   552 0.73 Domain of unknown function DUF87
MMR_HSR1             PF01926.18   116 sp|P60752|MSBA_ECOLI -            582     0.013   15.4   0.1   1   1   5.9e-05      0.04   13.8   0.1     2    89   372   463   371   568 0.74 50S ribosome-binding GTPase
AAA_30               PF13604.1    196 sp|P60752|MSBA_ECOLI -            582     0.015   14.9   0.0   1   1   5.6e-05     0.038   13.5   0.0    20   117   371   522   364   536 0.77 AAA domain
AAA_18               PF13238.1    129 sp|P60752|MSBA_ECOLI -            582     0.015   15.5   0.2   1   1   9.6e-05     0.064   13.5   0.2     1    23   372   420   372   559 0.70 AAA domain
APS_kinase           PF01583.15   157 sp|P60752|MSBA_ECOLI -            582     0.027   14.1   0.0   1   1   7.7e-05     0.052   13.2   0.0     2    45   369   411   368   440 0.79 Adenylylsulphate kinase
AAA_25               PF13481.1    194 sp|P60752|MSBA_ECOLI -            582     0.053   12.9   1.3   1   1   0.00029      0.19   11.0   1.3    30    59   366   403   354   538 0.57 AAA domain
NB-ARC               PF00931.17   287 sp|P60752|MSBA_ECOLI -            582     0.061   12.1   0.0   1   1   0.00025      0.17   10.7   0.0    20    41   370   391   362   398 0.86 NB-ARC domain
6PF2K                PF01591.13   223 sp|P60752|MSBA_ECOLI -            582     0.068   12.2   0.0   1   1   0.00023      0.15   11.0   0.0    15    86   371   451   360   461 0.85 6-phosphofructo-2-kinase
ABC_membrane_2       PF06472.10   282 sp|P60752|MSBA_ECOLI -            582      0.14   11.2   4.0   1   1   0.00031      0.21   10.7   3.2    86   266    88   260    26   276 0.77 ABC transporter transmembrane region 2
MscS_TM              PF12794.2    340 sp|P77338|MSCK_ECOLI -           1120   1.7e-97  326.0  29.0   1   2  3.5e-101   1.7e-97  326.0  29.0     5   340   508   826   505   826 0.97 Mechanosensitive ion channel inner membrane domain 1
MscS_porin           PF12795.2    240 sp|P77338|MSCK_ECOLI -           1120   5.3e-66  222.3  54.0   1   1   1.1e-69   5.3e-66  222.3  54.0     1   240    49   290    49   290 0.98 Mechanosensitive ion channel porin domain
MS_channel           PF00924.13   206 sp|P77338|MSCK_ECOLI -           1120   3.6e-61  206.0   0.5   2   2   7.3e-65   3.6e-61  206.0   0.5     2   206   887  1086   886  1086 0.99 Mechanosensitive ion channel
MscL                 PF01741.13   128 sp|P0A742|MSCL_ECOLI -            136   2.5e-57  192.5   3.1   1   1   5.7e-61   2.8e-57  192.3   3.1     1   128     3   132     3   132 0.98 Large-conductance mechanosensitive channel, MscL
UPF0239              PF06783.6     85 sp|P0A742|MSCL_ECOLI -            136     0.015   15.2   0.3   2   2   6.8e-06     0.034   14.0   0.0    16    64    67   116    58   134 0.75 Uncharacterised protein family (UPF0239)
DUF1443              PF07280.6     43 sp|P0A742|MSCL_ECOLI -            136     0.079   12.5   0.1   1   1   3.4e-05      0.17   11.5   0.1     2    24    85   107    85   109 0.94 Protein of unknown function (DUF1443)
MS_channel           PF00924.13   206 sp|P0C0S1|MSCS_ECOLI -            286   4.6e-59  199.2   3.1   2   2   6.3e-63   4.6e-59  199.2   3.1     3   206    72   268    70   268 0.99 Mechanosensitive ion channel
TM_helix             PF05552.7     53 sp|P0C0S1|MSCS_ECOLI -            286   1.5e-14   53.3   6.9   1   3     2e-18   1.5e-14   53.3   6.9     2    53    15    66    14    66 0.97 Conserved TM helix
MscS_TM              PF12794.2    340 sp|P39285|MSCM_ECOLI -           1107    4e-122  407.0  13.3   2   2  8.1e-126    4e-122  407.0  13.3     2   340   474   814   473   814 0.97 Mechanosensitive ion channel inner membrane domain 1
MscS_porin           PF12795.2    240 sp|P39285|MSCM_ECOLI -           1107   8.3e-58  195.5  55.5   1   1   1.7e-61   8.3e-58  195.5  55.5     1   239    30   260    27   261 0.96 Mechanosensitive ion channel porin domain
MS_channel           PF00924.13   206 sp|P39285|MSCM_ECOLI -           1107   1.2e-53  181.5   2.9   2   2   2.6e-57   1.3e-53  181.4   0.7     2   206   875  1074   874  1074 0.99 Mechanosensitive ion channel
PMSR                 PF01625.16   156 sp|P0A744|MSRA_ECOLI -            212   1.5e-62  210.0   0.0   1   1   3.9e-66     2e-62  209.7   0.0     2   153    45   200    44   202 0.98 Peptide methionine sulfoxide reductase
Metal_resist         PF13801.1    125 sp|P0A744|MSRA_ECOLI -            212     0.033   14.1   0.8   1   1   1.1e-05     0.053   13.5   0.8    20    68   120   168   112   177 0.76 Heavy-metal resistance
Glyco_hydro_65m      PF03632.10   370 sp|P0A744|MSRA_ECOLI -            212     0.054   12.1   0.5   1   1   1.5e-05     0.074   11.7   0.5    71   129   129   193   107   197 0.79 Glycosyl hydrolase family 65 central catalytic domain
SelR                 PF01641.13   124 sp|P0A746|MSRB_ECOLI -            137     6e-56  187.4   0.0   1   1   4.6e-60   6.9e-56  187.2   0.0     2   123     8   128     7   129 0.97 SelR domain
GAF_3                PF13492.1    129 sp|P76270|MSRC_ECOLI -            165   1.4e-09   38.1   0.1   1   1   4.7e-13   1.8e-09   37.8   0.1     7   124    30   148    25   153 0.84 GAF domain
GAF_2                PF13185.1    148 sp|P76270|MSRC_ECOLI -            165   1.4e-09   38.5   0.1   1   1   4.7e-13   1.8e-09   38.2   0.1    16   146    37   150    21   152 0.74 GAF domain
GAF                  PF01590.21   154 sp|P76270|MSRC_ECOLI -            165   9.2e-07   29.1   0.1   1   1     3e-10   1.1e-06   28.8   0.1    48   152    50   149    21   151 0.67 GAF domain
FCD                  PF07729.7    125 sp|P76270|MSRC_ECOLI -            165      0.11   12.7   0.0   1   1   8.2e-05      0.31   11.3   0.0    18    49   129   160   126   163 0.90 FCD domain
Peptidase_M90        PF06167.7    253 sp|P76346|MTFA_ECOLI -            265   1.1e-74  251.0   0.1   1   1     8e-79   1.2e-74  250.9   0.1    12   253     6   243     1   243 0.95 Glucose-regulated metallo-peptidase M90
Transgly             PF00912.17   178 sp|P46022|MTGA_ECOLI -            242   3.2e-54  182.9   0.0   1   1   2.7e-58     4e-54  182.6   0.0     9   178    59   228    50   228 0.96 Transglycosylase
Mannitol_dh_C        PF08125.8    245 sp|P09424|MTLD_ECOLI -            382   2.8e-72  242.8   0.0   2   2   1.9e-75   7.2e-72  241.4   0.0     1   244   148   373   148   374 0.98 Mannitol dehydrogenase C-terminal domain
Mannitol_dh          PF01232.18   151 sp|P09424|MTLD_ECOLI -            382   2.4e-28   98.9   0.1   1   1   1.4e-31     5e-28   97.9   0.1     1   151     1   123     1   123 0.97 Mannitol dehydrogenase Rossmann domain
CoA_binding_2        PF13380.1    116 sp|P09424|MTLD_ECOLI -            382    0.0073   16.4   0.6   1   1     2e-06    0.0073   16.4   0.6    17    81    34   105    23   106 0.87 CoA binding domain
3HCDH_N              PF02737.13   180 sp|P09424|MTLD_ECOLI -            382      0.01   15.5   1.3   1   1   4.2e-06     0.015   14.9   0.3     5    86     6    87     2    95 0.89 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
PNP_UDP_1            PF01048.15   234 sp|P0AF12|MTNN_ECOLI -            232   5.7e-50  169.4   2.1   1   1   4.3e-54   6.4e-50  169.3   2.1     1   233     2   226     2   227 0.94 Phosphorylase superfamily
DAO                  PF01266.19   358 sp|P40874|MTOX_ECOLI -            372     1e-57  195.6   0.0   1   1   8.8e-61   1.2e-57  195.4   0.0     1   357     4   352     4   353 0.86 FAD dependent oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P40874|MTOX_ECOLI -            372   9.4e-06   25.8   0.0   2   2   1.7e-05     0.023   14.7   0.0    90   147   157   213    95   237 0.84 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|P40874|MTOX_ECOLI -            372   9.5e-05   22.3   0.1   1   1   3.1e-06    0.0041   17.0   0.1     1   125     4   207     4   236 0.61 Pyridine nucleotide-disulphide oxidoreductase
HI0933_like          PF03486.9    409 sp|P40874|MTOX_ECOLI -            372   0.00091   17.8   0.1   2   2   0.00016      0.21   10.0   0.0   109   163   149   201   138   204 0.90 HI0933-like protein
Amino_oxidase        PF01593.19   450 sp|P40874|MTOX_ECOLI -            372    0.0023   17.0   0.0   1   1   2.5e-06    0.0033   16.5   0.0   220   265   160   204   124   217 0.82 Flavin containing amine oxidoreductase
FAD_oxidored         PF12831.2    428 sp|P40874|MTOX_ECOLI -            372    0.0039   16.3   0.4   1   2   5.3e-05     0.071   12.1   0.3     1    30     4    33     4    36 0.94 FAD dependent oxidoreductase
Thi4                 PF01946.12   230 sp|P40874|MTOX_ECOLI -            372     0.014   14.4   0.0   1   1   1.7e-05     0.023   13.7   0.0    17    50     2    35     1    47 0.90 Thi4 family
NAD_binding_8        PF13450.1     68 sp|P40874|MTOX_ECOLI -            372     0.014   15.3   0.1   1   1   2.4e-05     0.032   14.2   0.1     1    28     7    34     7    53 0.96 NAD(P)-binding Rossmann-like domain
FAD_binding_3        PF01494.14   356 sp|P40874|MTOX_ECOLI -            372     0.015   14.3   0.1   1   2   0.00028      0.38    9.7   0.0     2    40     3    41     2    48 0.90 FAD binding domain
GIDA                 PF01134.17   392 sp|P40874|MTOX_ECOLI -            372     0.037   12.8   0.2   1   2   6.6e-05      0.09   11.6   0.1     1    29     4    34     4    49 0.83 Glucose inhibited division protein A
FAD_binding_2        PF00890.19   417 sp|P40874|MTOX_ECOLI -            372      0.05   12.4   0.0   1   1   8.4e-05      0.11   11.2   0.0     1    29     4    32     4    40 0.92 FAD binding domain
Trp_Tyr_perm         PF03222.8    394 sp|P0AAD2|MTR_ECOLI  -            414  1.1e-154  515.0  28.6   1   1  1.7e-158  1.3e-154  514.8  28.6     2   394    10   402     9   402 0.99 Tryptophan/tyrosine permease family
DUF2937              PF11157.3    167 sp|P0AAD2|MTR_ECOLI  -            414      0.03   13.6   1.6   1   1   1.6e-05      0.12   11.7   1.6   108   162   104   158    94   162 0.89 Protein of unknown function (DUF2937)
UDG                  PF03167.14   152 sp|P0A9H1|MUG_ECOLI  -            168   5.4e-26   90.8   0.0   1   1   4.1e-30     6e-26   90.7   0.0     5   151     7   159     3   163 0.91 Uracil DNA glycosylase superfamily
MukB                 PF04310.7    227 sp|P22523|MUKB_ECOLI -           1486  2.6e-146  484.9   0.7   1   1  2.8e-149  5.1e-146  483.9   0.1     1   227     1   227     1   227 1.00 MukB N-terminal
SbcCD_C              PF13558.1     90 sp|P22523|MUKB_ECOLI -           1486   5.5e-14   51.8   0.3   1   1   1.3e-16   2.3e-13   49.8   0.0     1    89  1335  1424  1335  1425 0.88 Putative exonuclease SbcCD, C subunit
AAA_29               PF13555.1     62 sp|P22523|MUKB_ECOLI -           1486   5.6e-13   48.2   0.2   1   1   7.1e-16   1.3e-12   47.0   0.2     2    61     8    66     7    67 0.90 P-loop containing region of AAA domain
DUF4019              PF13211.1    105 sp|P22523|MUKB_ECOLI -           1486     0.071   13.3   0.2   1   1   3.8e-05     0.071   13.3   0.2    16    58   492   534   488   545 0.86 Protein of unknown function (DUF4019)
ABC_tran             PF00005.22   137 sp|P22523|MUKB_ECOLI -           1486      0.25   11.6   0.1   1   3   0.00014      0.25   11.6   0.1    13    38    29    54    22    78 0.83 ABC transporter
MukE                 PF04288.8    235 sp|P22524|MUKE_ECOLI -            234  4.7e-134  444.5   0.3   1   1  1.1e-137  5.3e-134  444.3   0.3     1   235    10   234    10   234 0.99 MukE-like family
DUF4194              PF13835.1    166 sp|P22524|MUKE_ECOLI -            234    0.0028   17.1   0.4   1   1   2.6e-06     0.013   14.9   0.4    20   154    45   182    29   186 0.72 Domain of unknown function (DUF4194)
DCD                  PF06559.6    366 sp|P22524|MUKE_ECOLI -            234     0.049   12.0   0.0   1   1   1.4e-05     0.069   11.5   0.0   215   277    29    92    11   101 0.87 2'-deoxycytidine 5'-triphosphate deaminase (DCD)
KicB                 PF03882.9    440 sp|P60293|MUKF_ECOLI -            440  2.6e-269  893.0  10.9   1   1  5.9e-273  2.9e-269  892.8  10.9     1   440     1   440     1   440 1.00 KicB killing factor
NACHT                PF05729.7    166 sp|P60293|MUKF_ECOLI -            440    0.0056   16.3   0.1   1   1   2.2e-06     0.011   15.4   0.1    71   142   145   225   113   242 0.74 NACHT domain
HTH_27               PF13463.1     68 sp|P60293|MUKF_ECOLI -            440     0.013   15.8   0.0   1   2   3.3e-05      0.17   12.2   0.0    24    68    59   107    42   107 0.85 Winged helix DNA-binding domain
EPSP_synthase        PF00275.15   419 sp|P0A749|MURA_ECOLI -            419  9.7e-129  429.4   0.9   1   1  2.3e-132  1.1e-128  429.2   0.9     1   419     6   406     6   406 0.97 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Phage_gp49_66        PF13876.1     81 sp|P0A749|MURA_ECOLI -            419     0.073   13.1   0.0   1   1   2.9e-05      0.14   12.2   0.0    20    61   162   207   136   216 0.74 Phage protein (N4 Gp49/phage Sf6 gene 66) family
MurB_C               PF02873.11   105 sp|P08373|MURB_ECOLI -            342   1.8e-42  143.3   0.0   1   1   4.2e-46   3.1e-42  142.5   0.0     1   105   203   330   203   330 0.99 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
FAD_binding_4        PF01565.18   139 sp|P08373|MURB_ECOLI -            342   1.2e-27   96.0   0.0   1   2   1.3e-30     1e-26   93.0   0.1     2   137    18   148    17   150 0.86 FAD binding domain
Mur_ligase_M         PF08245.7    188 sp|P17952|MURC_ECOLI -            491   3.3e-28   99.0   0.0   1   1     1e-31     5e-28   98.4   0.0     1   188   124   304   124   304 0.90 Mur ligase middle domain
Mur_ligase           PF01225.20    83 sp|P17952|MURC_ECOLI -            491   3.9e-24   84.5   0.1   1   1   1.8e-27   8.9e-24   83.3   0.1     1    82    21   119    21   120 0.97 Mur ligase family, catalytic domain
Mur_ligase_C         PF02875.16    91 sp|P17952|MURC_ECOLI -            491   4.8e-20   71.4   0.0   1   1   3.1e-23   1.5e-19   69.7   0.0     4    89   327   418   324   420 0.85 Mur ligase family, glutamate ligase domain
Mur_ligase_M         PF08245.7    188 sp|P14900|MURD_ECOLI -            438   4.6e-43  147.4   0.1   1   1   1.9e-46     7e-43  146.8   0.1     1   188   110   280   110   280 0.90 Mur ligase middle domain
Mur_ligase_C         PF02875.16    91 sp|P14900|MURD_ECOLI -            438   2.7e-11   43.3   0.0   2   2   4.4e-14   1.6e-10   40.8   0.0     2    81   301   373   300   379 0.88 Mur ligase family, glutamate ligase domain
NAD_binding_7        PF13241.1    103 sp|P14900|MURD_ECOLI -            438     0.017   15.4   0.0   1   1   1.3e-05      0.05   13.8   0.0     3    68     2    73     1    90 0.80 Putative NAD(P)-binding
DUF2453              PF10507.4    111 sp|P14900|MURD_ECOLI -            438     0.034   13.9   0.2   1   1   2.6e-05     0.096   12.4   0.1    23   110    67   149    58   150 0.80 Protein of unknown function (DUF2453)
Mur_ligase_M         PF08245.7    188 sp|P22188|MURE_ECOLI -            495   2.1e-45  155.0   0.2   1   1   7.1e-49   3.5e-45  154.3   0.2     1   187   114   318   114   319 0.89 Mur ligase middle domain
Mur_ligase_C         PF02875.16    91 sp|P22188|MURE_ECOLI -            495   2.3e-26   91.6   0.0   1   2   2.8e-29   1.4e-25   89.1   0.0     1    91   339   425   339   425 0.96 Mur ligase family, glutamate ligase domain
Mur_ligase           PF01225.20    83 sp|P22188|MURE_ECOLI -            495   2.2e-13   50.0   0.2   1   1   2.3e-16   1.1e-12   47.7   0.2     5    83    25   102    22   102 0.88 Mur ligase family, catalytic domain
Mur_ligase_M         PF08245.7    188 sp|P11880|MURF_ECOLI -            452   1.5e-49  168.6   0.1   1   1   5.7e-53   2.8e-49  167.7   0.0     2   187   106   292   105   293 0.97 Mur ligase middle domain
Mur_ligase_C         PF02875.16    91 sp|P11880|MURF_ECOLI -            452   4.2e-16   58.7   0.0   1   1   3.3e-19   1.6e-15   56.8   0.0     1    82   313   394   313   403 0.93 Mur ligase family, glutamate ligase domain
Mur_ligase           PF01225.20    83 sp|P11880|MURF_ECOLI -            452   9.2e-16   57.6   0.0   1   1     6e-19     3e-15   56.0   0.0     3    82    25    94    23    95 0.96 Mur ligase family, catalytic domain
Glyco_transf_28      PF03033.15   139 sp|P17443|MURG_ECOLI -            355   9.1e-38  129.1   1.3   1   2   1.3e-40   2.7e-37  127.6   0.4     2   138     9   145     8   146 0.98 Glycosyltransferase family 28 N-terminal domain
Glyco_tran_28_C      PF04101.11   167 sp|P17443|MURG_ECOLI -            355   6.1e-35  120.3   0.0   1   1   4.1e-38   8.6e-35  119.8   0.0     2   166   185   344   184   347 0.92 Glycosyltransferase family 28 C-terminal domain
Glyco_trans_1_3      PF13528.1    318 sp|P17443|MURG_ECOLI -            355   2.1e-11   43.6   0.0   1   1   1.5e-14   3.2e-11   43.0   0.0     6   315    10   319     6   321 0.80 Glycosyl transferase family 1
Glyco_trans_4_4      PF13579.1    160 sp|P17443|MURG_ECOLI -            355   8.9e-07   29.1   3.0   1   1   6.1e-09   1.3e-05   25.4   2.9     9   107    24   129    16   333 0.83 Glycosyl transferase 4-like domain
Glyco_trans_1_4      PF13692.1    135 sp|P17443|MURG_ECOLI -            355   5.1e-06   26.6   0.2   2   2   1.7e-08   3.6e-05   23.9   0.1    19   104   195   282   182   315 0.79 Glycosyl transferases group 1
Glyco_trans_4_2      PF13477.1    139 sp|P17443|MURG_ECOLI -            355    0.0045   16.8   0.0   1   1   3.4e-06    0.0072   16.1   0.0    16   104    25   123    10   148 0.72 Glycosyl transferase 4-like
OTCace               PF00185.19   158 sp|P17443|MURG_ECOLI -            355     0.016   15.1   0.0   1   1   1.6e-05     0.034   14.0   0.0     4    80   184   260   182   269 0.84 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Asp_Glu_race         PF01177.17   216 sp|P22634|MURI_ECOLI -            285   5.9e-30  104.7   0.1   1   1   5.2e-34   7.7e-30  104.4   0.1     2   214    25   234    24   236 0.85 Asp/Glu/Hydantoin racemase
MVIN                 PF03023.9    452 sp|P0AF16|MURJ_ECOLI -            511  4.1e-161  536.4  32.3   1   1  6.7e-165    5e-161  536.1  32.3     1   450    28   478    28   480 0.99 MviN-like protein
Polysacc_synt_C      PF14667.1    146 sp|P0AF16|MURJ_ECOLI -            511   5.6e-10   39.1  18.8   3   5   6.3e-05      0.47   10.2   5.3     2    81   131   212   130   223 0.90 Polysaccharide biosynthesis C-terminal domain
Polysacc_synt_C      PF14667.1    146 sp|P0AF16|MURJ_ECOLI -            511   5.6e-10   39.1  18.8   5   5   7.6e-14   5.6e-10   39.1  18.8     2   145   354   500   353   501 0.93 Polysaccharide biosynthesis C-terminal domain
SIS                  PF01380.17   131 sp|P76535|MURQ_ECOLI -            298   5.9e-09   35.6   0.0   2   3     8e-13   5.9e-09   35.6   0.0    50   128   128   208   114   211 0.95 SIS domain
SIS_2                PF13580.1    138 sp|P76535|MURQ_ECOLI -            298   2.8e-07   30.3   1.2   1   2   8.6e-11   6.4e-07   29.1   0.2    20   136    47   164    39   166 0.85 SIS domain
MutH                 PF02976.10   104 sp|P06722|MUTH_ECOLI -            229   1.6e-37  127.5   0.0   1   1   1.5e-41   2.2e-37  127.0   0.0     1   104    58   157    58   157 0.99 DNA mismatch repair enzyme MutH
DNA_mis_repair       PF01119.14   119 sp|P23367|MUTL_ECOLI -            615   8.9e-37  125.1   0.0   1   1   3.9e-40   1.5e-36  124.4   0.0     2   118   213   330   212   331 0.95 DNA mismatch repair protein, C-terminal domain
MutL_C               PF08676.6    144 sp|P23367|MUTL_ECOLI -            615   1.7e-23   82.7   0.2   1   1   4.7e-27   1.7e-23   82.7   0.2     2   134   435   563   434   572 0.92 MutL C terminal dimerisation domain
HATPase_c_3          PF13589.1    137 sp|P23367|MUTL_ECOLI -            615   1.2e-13   50.9   0.0   1   1   5.6e-17   2.1e-13   50.1   0.0     4   103    24   123    21   142 0.81 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c            PF02518.21   111 sp|P23367|MUTL_ECOLI -            615   6.8e-11   41.8   0.0   1   1   4.2e-14   1.6e-10   40.7   0.0     3    72    20    87    18   147 0.79 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
MutS_V               PF00488.16   235 sp|P23909|MUTS_ECOLI -            853  8.3e-105  349.3   0.0   1   1  5.6e-108  1.4e-104  348.6   0.0     1   234   567   798   567   799 0.99 MutS domain V
MutS_III             PF05192.13   204 sp|P23909|MUTS_ECOLI -            853   1.4e-48  165.3   2.6   1   1     1e-51   2.5e-48  164.5   2.6     1   204   271   560   271   560 0.96 MutS domain III
MutS_I               PF01624.15   113 sp|P23909|MUTS_ECOLI -            853   6.7e-44  148.5   0.0   1   1   7.4e-47   1.8e-43  147.1   0.0     1   112    11   122    11   123 0.99 MutS domain I
MutS_II              PF05188.12   137 sp|P23909|MUTS_ECOLI -            853     2e-33  115.3   0.0   1   1     2e-36   4.9e-33  114.1   0.0     1   137   131   256   131   256 0.98 MutS domain II
MutS_IV              PF05190.13    92 sp|P23909|MUTS_ECOLI -            853   4.1e-28   97.3   0.1   1   1   4.3e-31   1.1e-27   96.0   0.1     1    90   428   517   428   519 0.97 MutS family domain IV
CcmD                 PF04995.9     46 sp|P23909|MUTS_ECOLI -            853     0.024   14.3   0.0   1   1     5e-05      0.12   12.0   0.0    10    37   770   797   769   799 0.96 Heme exporter protein D (CcmD)
NUDIX                PF00293.23   135 sp|P08337|MUTT_ECOLI -            129   7.7e-22   77.3   0.2   1   1   1.8e-25   8.9e-22   77.1   0.2     4   132     7   126     4   129 0.85 NUDIX domain
NUDIX_4              PF14815.1    114 sp|P08337|MUTT_ECOLI -            129   7.4e-09   35.0   0.0   1   1   1.6e-12     8e-09   34.9   0.0     2   106     9   116     8   124 0.91 NUDIX domain
TruD                 PF01142.13   378 sp|P08337|MUTT_ECOLI -            129     0.012   14.3   0.0   1   1   2.8e-06     0.014   14.0   0.0   274   350    12    88     4    99 0.89 tRNA pseudouridine synthase D (TruD)
NUDIX_4              PF14815.1    114 sp|P17802|MUTY_ECOLI -            350   6.3e-29   99.7   0.1   1   1   4.8e-32     1e-28   99.0   0.1     1   114   234   342   234   342 0.93 NUDIX domain
HhH-GPD              PF00730.20   108 sp|P17802|MUTY_ECOLI -            350   8.2e-23   80.7   0.0   1   1   5.8e-26   1.2e-22   80.1   0.0     2   105    36   167    35   170 0.97 HhH-GPD superfamily base excision DNA repair protein
HHH                  PF00633.18    30 sp|P17802|MUTY_ECOLI -            350   8.2e-08   31.5   0.0   1   1   7.3e-11   1.6e-07   30.6   0.0     2    29   100   127    99   128 0.96 Helix-hairpin-helix motif
EndIII_4Fe-2S        PF10576.4     17 sp|P17802|MUTY_ECOLI -            350   4.2e-05   23.5   5.6   1   1   3.8e-08   8.1e-05   22.6   5.6     1    17   192   208   192   208 0.98 Iron-sulfur binding domain of endonuclease III
HHH_5                PF14520.1     60 sp|P17802|MUTY_ECOLI -            350   0.00076   19.6   0.0   1   2   3.3e-06    0.0071   16.5   0.0    26    55    59   126    53   132 0.95 Helix-hairpin-helix domain
HHH_8                PF14716.1     68 sp|P17802|MUTY_ECOLI -            350      0.17   12.0   0.0   1   1   0.00015      0.32   11.1   0.0    24    63    85   125    74   128 0.89 Helix-hairpin-helix domain
SecD-TM1             PF13721.1    101 sp|P42615|MZRA_ECOLI -            127   2.6e-16   59.7   0.0   1   1   6.9e-20   3.4e-16   59.3   0.0    10   101    16   105     8   105 0.91 SecD export protein N-terminal TM region
DUF3854              PF12965.2    130 sp|P42615|MZRA_ECOLI -            127     0.003   17.2   0.0   1   1   7.8e-07    0.0039   16.8   0.0    22   111    27   116    26   121 0.93 Domain of unknown function (DUF3854)
UvrC_HhH_N           PF08459.6    155 sp|P42615|MZRA_ECOLI -            127     0.017   14.6   0.0   1   1   4.6e-06     0.023   14.2   0.0   132   153   105   126    78   127 0.88 UvrC Helix-hairpin-helix N-terminal
NadA                 PF02445.11   296 sp|P11458|NADA_ECOLI -            347    3e-105  351.2   0.0   1   1  2.3e-109  3.5e-105  351.0   0.0     2   295    31   340    30   341 0.98 Quinolinate synthetase A protein
FAD_binding_2        PF00890.19   417 sp|P10902|NADB_ECOLI -            540    1e-106  357.3   1.4   1   1  1.1e-109  1.2e-106  357.0   1.4     1   417    10   392    10   392 0.95 FAD binding domain
Succ_DH_flav_C       PF02910.15   129 sp|P10902|NADB_ECOLI -            540   3.3e-19   68.9   0.2   1   1   5.6e-22     6e-19   68.1   0.2     2    88   441   521   440   526 0.96 Fumarate reductase flavoprotein C-term
Pyr_redox_2          PF07992.9    201 sp|P10902|NADB_ECOLI -            540   2.1e-11   44.1   3.5   1   1   8.1e-12   8.5e-09   35.5   3.5     1   197    10   377    10   380 0.80 Pyridine nucleotide-disulphide oxidoreductase
DAO                  PF01266.19   358 sp|P10902|NADB_ECOLI -            540   1.4e-05   24.2   5.6   1   1   8.2e-08   8.7e-05   21.5   5.6     1    50    10    62    10   212 0.78 FAD dependent oxidoreductase
HI0933_like          PF03486.9    409 sp|P10902|NADB_ECOLI -            540    0.0001   20.9   0.3   1   3   5.8e-05     0.062   11.7   0.1     1    32     9    39     9    52 0.84 HI0933-like protein
Thi4                 PF01946.12   230 sp|P10902|NADB_ECOLI -            540   0.00013   21.1   5.0   1   2   0.00037      0.39    9.7   0.2    17    47     8    38     2    59 0.76 Thi4 family
Thi4                 PF01946.12   230 sp|P10902|NADB_ECOLI -            540   0.00013   21.1   5.0   2   2     7e-05     0.074   12.1   0.1    96   169   138   212   124   221 0.76 Thi4 family
FAD_binding_3        PF01494.14   356 sp|P10902|NADB_ECOLI -            540   0.00065   18.8   0.6   1   2   1.7e-06    0.0018   17.3   0.2     2    33     9    39     8    53 0.89 FAD binding domain
GMC_oxred_N          PF00732.14   296 sp|P10902|NADB_ECOLI -            540   0.00071   18.8   0.5   2   2   0.00074      0.78    8.8   0.2   194   257   140   207   118   209 0.84 GMC oxidoreductase
NAD_binding_8        PF13450.1     68 sp|P10902|NADB_ECOLI -            540     0.004   17.1   0.1   1   1   1.3e-05     0.014   15.4   0.1     1    28    13    39    13    48 0.85 NAD(P)-binding Rossmann-like domain
Lycopene_cycl        PF05834.7    374 sp|P10902|NADB_ECOLI -            540    0.0086   15.0   0.2   1   1   1.3e-05     0.014   14.3   0.2     1    29    10    35    10    46 0.79 Lycopene cyclase protein
GIDA                 PF01134.17   392 sp|P10902|NADB_ECOLI -            540     0.075   11.8   1.2   1   1   0.00084      0.89    8.3   1.2     1   159    10   215    10   228 0.67 Glucose inhibited division protein A
QRPTase_C            PF01729.14   169 sp|P30011|NADC_ECOLI -            297   3.5e-65  218.6   0.1   1   1   2.5e-68   4.6e-65  218.2   0.1     1   169   131   295   131   295 0.99 Quinolinate phosphoribosyl transferase, C-terminal domain
QRPTase_N            PF02749.11    88 sp|P30011|NADC_ECOLI -            297   2.5e-27   94.5   0.1   1   1   5.1e-30   9.4e-27   92.6   0.0     4    88    43   129    41   129 0.98 Quinolinate phosphoribosyl transferase, N-terminal domain
Pterin_bind          PF00809.17   210 sp|P30011|NADC_ECOLI -            297    0.0024   17.2   0.0   1   1   2.3e-06    0.0042   16.4   0.0    52   118   212   276   203   284 0.77 Pterin binding enzyme
PEP_mutase           PF13714.1    238 sp|P30011|NADC_ECOLI -            297    0.0033   16.6   0.0   1   1   3.2e-06    0.0059   15.8   0.0   164   222   225   284   206   293 0.79 Phosphoenolpyruvate phosphomutase
IMPDH                PF00478.20   352 sp|P30011|NADC_ECOLI -            297    0.0079   15.1   0.0   1   1   4.3e-06    0.0079   15.1   0.0    93   177   202   281    51   284 0.84 IMP dehydrogenase / GMP reductase domain
Ribul_P_3_epim       PF00834.14   201 sp|P30011|NADC_ECOLI -            297      0.03   13.4   0.1   2   2   5.1e-05     0.094   11.8   0.0   154   195   241   282   234   288 0.90 Ribulose-phosphate 3 epimerase family
IGPS                 PF00218.16   254 sp|P30011|NADC_ECOLI -            297     0.032   13.2   0.9   1   1   3.7e-05     0.069   12.1   0.9   163   238   214   281   191   292 0.77 Indole-3-glycerol phosphate synthase
Biotin_lipoyl        PF00364.17    74 sp|P30011|NADC_ECOLI -            297     0.071   12.7   0.0   1   1   8.6e-05      0.16   11.6   0.0    13    38    87   108    78   109 0.86 Biotin-requiring enzyme
CTP_transf_2         PF01467.21   157 sp|P0A752|NADD_ECOLI -            213     3e-41  141.0   0.0   1   1   2.3e-45   3.5e-41  140.8   0.0     1   157     7   187     7   187 0.98 Cytidylyltransferase
NAD_synthase         PF02540.12   242 sp|P18843|NADE_ECOLI -            275   8.1e-79  263.9   0.0   1   1   6.3e-83   9.4e-79  263.7   0.0     2   242    23   265    22   265 0.98 NAD synthase
NAD_kinase           PF01513.16   285 sp|P0A7B3|NADK_ECOLI -            292   6.7e-73  244.9   0.0   1   1     1e-76   7.6e-73  244.7   0.0     2   284     8   271     7   272 0.98 ATP-NAD kinase
TROVE                PF05731.6    385 sp|P0A7B3|NADK_ECOLI -            292      0.08   11.6   0.0   1   1   1.5e-05      0.11   11.2   0.0    51   112   102   162    98   177 0.80 TROVE domain
AAA_28               PF13521.1    163 sp|P27278|NADR_ECOLI -            410   3.5e-29  101.8   0.0   1   1   5.9e-32   5.1e-29  101.3   0.0     2   163   234   394   233   394 0.92 AAA domain
HTH_3                PF01381.17    55 sp|P27278|NADR_ECOLI -            410   1.4e-09   37.6   0.1   1   1   5.5e-12   4.8e-09   35.9   0.0     1    52     7    59     7    61 0.95 Helix-turn-helix
HTH_19               PF12844.2     64 sp|P27278|NADR_ECOLI -            410   2.6e-08   33.8   0.0   1   2   7.9e-10   6.9e-07   29.2   0.0     3    55     6    59     5    67 0.94 Helix-turn-helix domain
HTH_31               PF13560.1     64 sp|P27278|NADR_ECOLI -            410   3.3e-06   27.2   0.0   1   1   8.5e-09   7.4e-06   26.0   0.0    12    56    13    57     5    63 0.91 Helix-turn-helix domain
CTP_transf_2         PF01467.21   157 sp|P27278|NADR_ECOLI -            410     0.002   18.1   0.4   1   2   4.2e-05     0.037   14.0   0.1     2    38    69   103    68   214 0.78 Cytidylyltransferase
Citrate_ly_lig       PF08218.6    182 sp|P27278|NADR_ECOLI -            410    0.0021   17.5   0.0   1   2   3.8e-05     0.033   13.6   0.0    10    38    75   103    66   120 0.83 Citrate lyase ligase C-terminal domain
HTH_26               PF13443.1     63 sp|P27278|NADR_ECOLI -            410    0.0037   17.4   0.1   1   2   5.7e-05      0.05   13.8   0.0     2    51     7    56     6    59 0.93 Cro/C1-type HTH DNA-binding domain
MMR_HSR1             PF01926.18   116 sp|P27278|NADR_ECOLI -            410     0.012   15.5   0.0   1   1   2.8e-05     0.024   14.5   0.0     2    22   234   254   233   335 0.89 50S ribosome-binding GTPase
MobB                 PF03205.9    140 sp|P27278|NADR_ECOLI -            410     0.014   15.0   0.0   1   1   3.3e-05     0.029   14.0   0.0     2    61   233   294   232   322 0.76 Molybdopterin guanine dinucleotide synthesis protein B
HTH_37               PF13744.1     80 sp|P27278|NADR_ECOLI -            410     0.014   15.1   0.0   1   1   3.1e-05     0.027   14.2   0.0    24    72     8    56     5    59 0.89 Helix-turn-helix domain
FAD_syn              PF06574.7    158 sp|P27278|NADR_ECOLI -            410     0.023   14.3   0.0   1   1   0.00015      0.13   11.8   0.0     4    72    62   127    59   148 0.80 FAD synthetase
ABC_tran             PF00005.22   137 sp|P27278|NADR_ECOLI -            410     0.037   14.3   0.0   2   2   0.00038      0.33   11.2   0.0    13    37   233   257   229   264 0.88 ABC transporter
AAA_17               PF13207.1    121 sp|P27278|NADR_ECOLI -            410     0.047   14.5   0.3   1   1   0.00018      0.16   12.8   0.3     2    58   234   306   233   400 0.59 AAA domain
AAA_29               PF13555.1     62 sp|P27278|NADR_ECOLI -            410     0.068   12.7   0.0   1   1   0.00016      0.14   11.6   0.0    25    47   233   255   218   263 0.75 P-loop containing region of AAA domain
Miro                 PF08477.8    119 sp|P27278|NADR_ECOLI -            410      0.15   12.5   0.0   1   1   0.00037      0.33   11.4   0.0     2    21   234   253   233   289 0.89 Miro-like protein
Dynamin_N            PF00350.18   168 sp|P27278|NADR_ECOLI -            410      0.22   11.3   0.4   1   1   0.00051      0.44   10.3   0.4     1    19   234   252   234   255 0.92 Dynamin family
Amidohydro_1         PF01979.15   333 sp|P0AF18|NAGA_ECOLI -            382   1.7e-39  136.4   0.3   1   1   5.3e-43     2e-39  136.2   0.3     1   332    50   363    50   364 0.94 Amidohydrolase family
Amidohydro_4         PF13147.1    304 sp|P0AF18|NAGA_ECOLI -            382   1.5e-12   48.1   0.1   1   1   9.3e-15   3.5e-11   43.6   0.1     2   304    46   361    45   361 0.77 Amidohydrolase
Amidohydro_3         PF07969.6    404 sp|P0AF18|NAGA_ECOLI -            382   1.7e-05   24.2   0.1   1   1   9.1e-09   3.4e-05   23.2   0.1   368   403   326   361   305   362 0.90 Amidohydrolase family
Amidohydro_5         PF13594.1     68 sp|P0AF18|NAGA_ECOLI -            382   5.4e-05   22.9   0.0   1   1   4.2e-08   0.00016   21.4   0.0     1    66    21    93    21   110 0.66 Amidohydrolase
Glucosamine_iso      PF01182.15   199 sp|P0A759|NAGB_ECOLI -            266     1e-24   87.4   0.0   1   1   8.9e-29   1.3e-24   87.0   0.0     4   198    15   216    12   217 0.85 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
ROK                  PF00480.15   179 sp|P0AF20|NAGC_ECOLI -            406   1.6e-59  200.7   0.2   1   1   3.3e-62   3.7e-59  199.5   0.0     1   179    90   274    90   274 0.99 ROK family
MarR                 PF01047.17    59 sp|P0AF20|NAGC_ECOLI -            406   9.1e-08   31.7   0.0   1   1   2.6e-10     3e-07   30.0   0.0    10    48    25    63    18    67 0.94 MarR family
MarR_2               PF12802.2     62 sp|P0AF20|NAGC_ECOLI -            406   4.5e-05   23.0   0.1   1   1   1.1e-07   0.00012   21.6   0.1    22    58    33    71    23    76 0.80 MarR family
Fe_dep_repress       PF01325.14    60 sp|P0AF20|NAGC_ECOLI -            406   0.00097   19.0   0.0   1   1   1.8e-06    0.0021   17.9   0.0    12    53    22    63    21    69 0.93 Iron dependent repressor, N-terminal DNA binding domain
HTH_24               PF13412.1     48 sp|P0AF20|NAGC_ECOLI -            406    0.0036   16.6   0.7   1   1   7.8e-06    0.0089   15.4   0.1    10    48    25    63    22    63 0.92 Winged helix-turn-helix DNA-binding
HTH_IclR             PF09339.5     52 sp|P0AF20|NAGC_ECOLI -            406    0.0066   16.0   0.0   1   1   1.9e-05     0.021   14.3   0.0    23    50    37    64    25    66 0.91 IclR helix-turn-helix domain
FeoC                 PF09012.5     69 sp|P0AF20|NAGC_ECOLI -            406     0.017   14.8   0.4   1   1   4.4e-05      0.05   13.3   0.0     7    53    25    71    21    76 0.91 FeoC like transcriptional regulator
TrmB                 PF01978.14    68 sp|P0AF20|NAGC_ECOLI -            406     0.018   14.7   0.0   1   1   3.6e-05     0.041   13.5   0.0    11    57    21    67    17    88 0.88 Sugar-specific transcriptional regulator TrmB
Rrf2                 PF02082.15    83 sp|P0AF20|NAGC_ECOLI -            406     0.052   13.6   0.4   1   1   0.00045      0.52   10.4   0.0    24    57    31    64    20    67 0.87 Transcriptional regulator
HARE-HTH             PF05066.8     72 sp|P0AF20|NAGC_ECOLI -            406     0.052   13.9   0.0   1   1   0.00034      0.39   11.0   0.0     8    38    36    67    35    94 0.86 HB1, ASXL, restriction endonuclease HTH domain
DUF387               PF04079.11   159 sp|P0AF20|NAGC_ECOLI -            406     0.055   12.8   0.2   1   1   0.00011      0.12   11.7   0.2    91   137    27    77    15    89 0.70 Putative transcriptional regulators (Ypuh-like)
HTH_Crp_2            PF13545.1     76 sp|P0AF20|NAGC_ECOLI -            406     0.086   12.6   0.1   1   1   0.00029      0.33   10.7   0.1    29    60    33    68    23    80 0.80 Crp-like helix-turn-helix domain
Hydrolase_6          PF13344.1    101 sp|P0AF24|NAGD_ECOLI -            250   5.7e-23   80.7   0.0   1   1   3.7e-26   1.1e-22   79.7   0.0     1   101     6   105     6   105 0.98 Haloacid dehalogenase-like hydrolase
Hydrolase_like       PF13242.1     75 sp|P0AF24|NAGD_ECOLI -            250   2.7e-19   68.6   0.0   2   2     3e-22     9e-19   66.9   0.0     2    74   174   246   173   247 0.97 HAD-hyrolase-like
Hydrolase            PF00702.21   215 sp|P0AF24|NAGD_ECOLI -            250   1.4e-10   42.0   0.1   2   3   0.00031      0.92    9.8   0.0   130   171    22    63    18    94 0.72 haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P0AF24|NAGD_ECOLI -            250   1.4e-10   42.0   0.1   3   3   3.5e-09     1e-05   26.0   0.0   163   215   160   214   135   214 0.93 haloacid dehalogenase-like hydrolase
HAD_2                PF13419.1    176 sp|P0AF24|NAGD_ECOLI -            250   1.9e-10   41.2   0.0   1   2   3.6e-06     0.011   16.0   0.0    75   125    17    69     6    83 0.77 Haloacid dehalogenase-like hydrolase
HAD_2                PF13419.1    176 sp|P0AF24|NAGD_ECOLI -            250   1.9e-10   41.2   0.0   2   2   3.6e-08   0.00011   22.5   0.0   131   176   174   220   155   220 0.91 Haloacid dehalogenase-like hydrolase
PrpR_N               PF06506.6    176 sp|P0AF24|NAGD_ECOLI -            250     0.029   13.7   0.0   1   1   2.1e-05     0.061   12.7   0.0   114   156   182   227   178   230 0.87 Propionate catabolism activator
ROK                  PF00480.15   179 sp|P75959|NAGK_ECOLI -            303   1.4e-45  155.3   0.0   1   1   2.5e-49   1.9e-45  154.8   0.0     1   179     4   194     4   194 0.95 ROK family
Glucokinase          PF02685.11   316 sp|P75959|NAGK_ECOLI -            303   3.7e-10   39.0   0.0   1   1     4e-13   2.9e-09   36.1   0.0     4   265     6   256     4   268 0.80 Glucokinase
Glyco_hydro_3        PF00933.16   299 sp|P75949|NAGZ_ECOLI -            341   4.8e-72  242.4   0.0   1   1   4.1e-76   6.1e-72  242.1   0.0     3   294     7   319     5   320 0.94 Glycosyl hydrolase family 3 N terminal domain
DHDPS                PF00701.17   289 sp|P0A6L4|NANA_ECOLI -            297  2.3e-107  357.9   0.0   1   1  3.5e-111  2.6e-107  357.7   0.0     2   289     5   293     4   293 0.99 Dihydrodipicolinate synthetase family
KdgM                 PF06178.8    218 sp|P69856|NANC_ECOLI -            238     2e-64  217.0  12.5   1   1   4.6e-68   2.3e-64  216.9  12.5     3   216    19   236    17   238 0.98 Oligogalacturonate-specific porin protein (KdgM)
DUF1597              PF07642.6    344 sp|P69856|NANC_ECOLI -            238   0.00015   20.9   7.2   2   2     3e-08   0.00015   20.9   7.2   141   242   113   224   113   236 0.82 Outer membrane protein family (DUF1597)
GspH                 PF12019.3    114 sp|P69856|NANC_ECOLI -            238       0.1   12.7   0.3   1   1   3.5e-05      0.17   12.0   0.3    34    89    41   107    21   129 0.68 Type II transport protein GspH
NanE                 PF04131.9    192 sp|P0A761|NANE_ECOLI -            229   8.9e-93  308.5   0.5   1   1   4.2e-96     1e-92  308.3   0.5     1   192    35   226    35   226 0.99 Putative N-acetylmannosamine-6-phosphate epimerase
IGPS                 PF00218.16   254 sp|P0A761|NANE_ECOLI -            229    0.0014   17.7   0.0   2   2   3.6e-05     0.088   11.8   0.0   148   246   116   215   111   222 0.92 Indole-3-glycerol phosphate synthase
Pantoate_transf      PF02548.10   261 sp|P0A761|NANE_ECOLI -            229     0.014   14.5   0.4   1   2   9.8e-05      0.24   10.4   0.5   164   203    35    72    11    74 0.87 Ketopantoate hydroxymethyltransferase
IMPDH                PF00478.20   352 sp|P0A761|NANE_ECOLI -            229     0.016   14.1   0.2   2   2   0.00014      0.36    9.6   0.0   204   246   171   213   168   224 0.89 IMP dehydrogenase / GMP reductase domain
ThiG                 PF05690.9    247 sp|P0A761|NANE_ECOLI -            229      0.15   11.0   3.2   2   2   6.8e-05      0.17   10.9   0.3   181   224   184   228   170   229 0.83 Thiazole biosynthesis protein ThiG
ROK                  PF00480.15   179 sp|P45425|NANK_ECOLI -            291   4.1e-54  183.1   0.1   1   1   1.8e-57   6.5e-54  182.4   0.1     1   179     5   183     5   183 0.98 ROK family
BcrAD_BadFG          PF01869.15   271 sp|P45425|NANK_ECOLI -            291    0.0014   18.0   1.1   2   2   6.2e-05      0.23   10.7   0.6   181   271   196   286   184   286 0.85 BadF/BadG/BcrA/BcrD ATPase family
DEDD_Tnp_IS110       PF01548.12   144 sp|P45425|NANK_ECOLI -            291    0.0016   18.1   0.0   1   3   5.1e-05      0.19   11.4   0.0     2    58     4    67     3    76 0.84 Transposase
Glucokinase          PF02685.11   316 sp|P45425|NANK_ECOLI -            291    0.0054   15.5   2.5   1   2   2.1e-06    0.0077   15.0   0.0     1   110     4   115     4   148 0.76 Glucokinase
Kelch_6              PF13964.1     50 sp|P39371|NANM_ECOLI -            368   2.7e-15   55.8  15.3   1   6   0.00018      0.39   10.9   0.0     4    50    31    75    28    75 0.82 Kelch motif
Kelch_6              PF13964.1     50 sp|P39371|NANM_ECOLI -            368   2.7e-15   55.8  15.3   2   6   9.4e-12     2e-08   34.0   0.1     1    43    74   120    74   126 0.92 Kelch motif
Kelch_4              PF13418.1     49 sp|P39371|NANM_ECOLI -            368   9.7e-15   54.0  28.3   2   7   3.2e-12   6.7e-09   35.3   0.1     2    46    75   125    74   128 0.87 Galactose oxidase, central domain
Kelch_4              PF13418.1     49 sp|P39371|NANM_ECOLI -            368   9.7e-15   54.0  28.3   7   7   2.1e-06    0.0045   16.7   0.0     1    42   325   365   325   366 0.94 Galactose oxidase, central domain
Kelch_1              PF01344.20    47 sp|P39371|NANM_ECOLI -            368   1.1e-13   50.4   5.8   1   3   8.9e-12   1.9e-08   33.7   0.0     1    43    74   120    74   122 0.95 Kelch motif
Kelch_1              PF01344.20    47 sp|P39371|NANM_ECOLI -            368   1.1e-13   50.4   5.8   2   3   6.9e-06     0.015   14.8   0.7     3    43   129   202   127   206 0.94 Kelch motif
Kelch_2              PF07646.10    49 sp|P39371|NANM_ECOLI -            368   6.2e-12   44.7   7.8   1   4   1.2e-09   2.6e-06   26.9   0.0     1    44    74   119    74   120 0.92 Kelch motif
Kelch_3              PF13415.1     49 sp|P39371|NANM_ECOLI -            368   3.3e-11   43.0  13.3   2   6   2.8e-10   5.8e-07   29.4   0.0     2    46    85   133    84   136 0.80 Galactose oxidase, central domain
Kelch_5              PF13854.1     42 sp|P39371|NANM_ECOLI -            368   1.4e-10   40.8   8.4   1   3   2.7e-09   5.8e-06   26.1   0.0     3    42    73   115    70   115 0.91 Kelch motif
Kelch_5              PF13854.1     42 sp|P39371|NANM_ECOLI -            368   1.4e-10   40.8   8.4   2   3   8.2e-05      0.17   11.8   0.2     6    26   129   150   124   159 0.80 Kelch motif
MFS_1                PF07690.11   352 sp|P41036|NANT_ECOLI -            496   2.4e-38  131.7  58.7   1   2   1.9e-28   9.2e-25   87.0  33.7     2   285    26   289    25   294 0.72 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P41036|NANT_ECOLI -            496   2.4e-38  131.7  58.7   2   2   5.7e-16   2.8e-12   46.0  22.8     3   171   282   452   279   492 0.79 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P41036|NANT_ECOLI -            496   1.1e-26   93.4  11.4   1   3   2.3e-30   1.1e-26   93.4  11.4     2   197    21   200    20   211 0.91 Sugar (and other) transporter
Molybdopterin        PF00384.17   432 sp|P33937|NAPA_ECOLI -            828   6.4e-92  308.5   0.1   1   1   2.1e-95   7.8e-92  308.2   0.1     1   431    96   567    96   568 0.95 Molybdopterin oxidoreductase
Molydop_binding      PF01568.16   110 sp|P33937|NAPA_ECOLI -            828   1.4e-24   86.0   0.0   1   1   7.9e-28   2.9e-24   84.9   0.0     1   110   714   822   714   822 0.95 Molydopterin dinucleotide binding domain
Molybdop_Fe4S4       PF04879.11    55 sp|P33937|NAPA_ECOLI -            828   1.9e-17   62.8   2.0   1   1   1.1e-20   4.2e-17   61.7   1.1     2    54    40    92    39    93 0.96 Molybdopterin oxidoreductase Fe4S4 domain
TAT_signal           PF10518.4     26 sp|P33937|NAPA_ECOLI -            828    0.0011   18.8   4.3   1   1   8.3e-07    0.0031   17.4   4.3     1    24     2    25     2    27 0.91 TAT (twin-arginine translocation) pathway signal sequence
NapB                 PF03892.9    134 sp|P0ABL3|NAPB_ECOLI -            149   1.7e-45  153.9   0.0   1   1   1.2e-48   1.9e-45  153.8   0.0    31   133    41   143    14   144 0.90 Nitrate reductase cytochrome c-type subunit (NapB)
Cytochrome_C554      PF13435.1    130 sp|P0ABL3|NAPB_ECOLI -            149    0.0018   18.3   0.2   1   1   1.8e-06     0.003   17.5   0.2    43    88    75   132    51   143 0.71 Cytochrome c554 and c-prime
Paired_CXXCH_1       PF09699.5     41 sp|P0ABL3|NAPB_ECOLI -            149    0.0086   15.5   2.3   2   2     5e-05     0.083   12.4   2.3     7    39    81   130    75   132 0.72 Doubled CXXCH motif (Paired_CXXCH_1)
Cytochrom_NNT        PF03264.9    174 sp|P0ABL3|NAPB_ECOLI -            149     0.014   14.8   0.7   1   1   2.1e-05     0.034   13.5   0.7    30    78    74   133    66   144 0.73 NapC/NirT cytochrome c family, N-terminal region
Cytochrom_c3_2       PF14537.1     80 sp|P0ABL3|NAPB_ECOLI -            149     0.016   15.5   0.3   1   1   3.4e-05     0.055   13.8   0.3     6    39    80   133    75   145 0.71 Cytochrome c3
Cytochrome_C7        PF14522.1     65 sp|P0ABL3|NAPB_ECOLI -            149     0.019   14.5   0.5   1   1     4e-05     0.066   12.8   0.5    11    46    79   130    66   145 0.53 Cytochrome c7
Cytochrom_C          PF00034.16    91 sp|P0ABL3|NAPB_ECOLI -            149      0.08   13.7   2.0   1   1   0.00052      0.86   10.4   1.0     3    32    72   101    70   146 0.81 Cytochrome c
Molybdopterin        PF00384.17   432 sp|P09152|NARG_ECOLI -           1247  1.8e-197  656.3   0.0   1   1  6.2e-201  2.3e-197  655.9   0.0     1   432   108   833   108   833 1.00 Molybdopterin oxidoreductase
Molydop_binding      PF01568.16   110 sp|P09152|NARG_ECOLI -           1247   2.5e-23   81.9   0.1   2   2   7.8e-26   2.9e-22   78.5   0.0     1   106  1087  1202  1087  1206 0.95 Molydopterin dinucleotide binding domain
Nitr_red_alph_N      PF14710.1     38 sp|P09152|NARG_ECOLI -           1247     7e-18   64.5   4.6   1   1   5.5e-21   2.1e-17   63.0   4.6     1    38     3    40     3    40 0.99 Respiratory nitrate reductase alpha N-terminal
Molybdop_Fe4S4       PF04879.11    55 sp|P09152|NARG_ECOLI -           1247    0.0092   15.7   0.1   1   1   5.7e-06     0.021   14.6   0.1    10    54    53   104    44   105 0.79 Molybdopterin oxidoreductase Fe4S4 domain
Nitrate_red_del      PF02613.10   136 sp|P0AF26|NARJ_ECOLI -            236   1.8e-28   99.0   6.5   1   1     4e-32     3e-28   98.3   6.5    15   133    17   161     3   165 0.83 Nitrate reductase delta subunit
TerB-N               PF13208.1    211 sp|P0AF26|NARJ_ECOLI -            236     0.053   12.9   0.7   1   1   1.3e-05     0.094   12.1   0.7   101   192    85   184    75   200 0.72 TerB-N
MFS_1                PF07690.11   352 sp|P10903|NARK_ECOLI -            463   1.9e-15   56.4  58.6   1   2   1.3e-19   1.9e-15   56.4  58.6     2   352    45   422    44   422 0.76 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P37758|NARU_ECOLI -            462   4.7e-09   35.4  68.1   1   2   3.2e-13   4.7e-09   35.4  68.1     2   352    43   419    38   419 0.70 Major Facilitator Superfamily
Nitrate_red_del      PF02613.10   136 sp|P19317|NARW_ECOLI -            231   2.8e-25   88.7   2.2   1   1   3.5e-29   5.2e-25   87.8   2.2     7   133     9   154     3   157 0.85 Nitrate reductase delta subunit
Molybdopterin        PF00384.17   432 sp|P19319|NARZ_ECOLI -           1246  1.2e-166  554.7   0.0   1   1    4e-170  1.5e-166  554.4   0.0     1   432   108   832   108   832 0.99 Molybdopterin oxidoreductase
Molydop_binding      PF01568.16   110 sp|P19319|NARZ_ECOLI -           1246   7.3e-21   74.0   0.1   1   1   4.1e-24   1.5e-20   73.0   0.1     1   106  1086  1201  1086  1205 0.93 Molydopterin dinucleotide binding domain
Nitr_red_alph_N      PF14710.1     38 sp|P19319|NARZ_ECOLI -           1246   5.3e-18   64.9   3.6   1   1   4.2e-21   1.5e-17   63.4   3.6     1    38     3    40     3    40 0.98 Respiratory nitrate reductase alpha N-terminal
Molybdop_Fe4S4       PF04879.11    55 sp|P19319|NARZ_ECOLI -           1246    0.0084   15.9   0.2   1   1   7.1e-06     0.026   14.3   0.1    10    54    53   104    44   105 0.84 Molybdopterin oxidoreductase Fe4S4 domain
NTPase_I-T           PF01931.13   168 sp|P39411|NCPP_ECOLI -            170   2.5e-65  219.2   0.0   1   1   1.9e-69   2.8e-65  219.1   0.0     1   166     7   168     7   170 0.99 Protein of unknown function DUF84
NDK                  PF00334.14   135 sp|P0A763|NDK_ECOLI  -            143   1.6e-54  183.3   0.0   1   1   1.2e-58   1.8e-54  183.1   0.0     1   134     4   137     4   138 0.99 Nucleoside diphosphate kinase
NA37                 PF04245.8    325 sp|P33920|NDPA_ECOLI -            335  1.6e-103  346.5   0.0   1   1  1.2e-107  1.8e-103  346.3   0.0     2   325    10   329     9   329 0.97 37-kD nucleoid-associated bacterial protein
Oxidored_FMN         PF00724.15   341 sp|P77258|NEMA_ECOLI -            365   2.5e-90  302.9   0.0   1   1   1.9e-94   2.8e-90  302.7   0.0     1   340     5   343     5   344 0.93 NADH:flavin oxidoreductase / NADH oxidase family
MFS_1                PF07690.11   352 sp|P0ADL1|NEPI_ECOLI -            396   2.6e-34  118.5  56.9   1   2   3.8e-37   5.6e-33  114.1  49.1     2   335    26   343    25   348 0.85 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P0ADL1|NEPI_ECOLI -            396   2.6e-34  118.5  56.9   2   2   1.1e-05      0.17   10.5   1.0   121   168   340   387   335   394 0.87 Major Facilitator Superfamily
Endonuclease_5       PF04493.9    206 sp|P68739|NFI_ECOLI  -            223   1.2e-70  237.0   0.0   1   1   9.3e-75   1.4e-70  236.8   0.0     1   205     9   208     9   209 0.99 Endonuclease V
Nitroreductase       PF00881.19   165 sp|P38489|NFSB_ECOLI -            217     9e-30  103.6   0.0   1   1   7.1e-34   1.1e-29  103.4   0.0     2   165     8   193     7   193 0.96 Nitroreductase family
Nitroreductase       PF00881.19   165 sp|P17117|NFSA_ECOLI -            240   3.7e-22   78.8   0.3   1   1   1.1e-25   7.8e-22   77.8   0.3     3   165    10   159     8   159 0.78 Nitroreductase family
CPSase_L_chain       PF00289.17   110 sp|P17117|NFSA_ECOLI -            240     0.093   12.8   0.0   1   1   2.2e-05      0.16   12.0   0.0    48    97    29    82    17    93 0.82 Carbamoyl-phosphate synthase L chain, N-terminal domain
Fe-S_biosyn          PF01521.15   112 sp|P63020|NFUA_ECOLI -            191   1.4e-12   47.5   0.0   1   1   3.3e-16   2.5e-12   46.7   0.0     3   107     2    99     1   103 0.92 Iron-sulphur cluster biosynthesis
NifU                 PF01106.12    68 sp|P63020|NFUA_ECOLI -            191   2.1e-10   40.1   0.0   1   1   4.4e-14   3.3e-10   39.5   0.0     2    65   112   177   111   180 0.90 NifU-like domain
Na_H_antiport_1      PF06965.7    378 sp|P13738|NHAA_ECOLI -            388  9.3e-165  547.9  29.2   1   1  7.2e-169  1.1e-164  547.7  29.2     2   378     5   380     4   380 0.99 Na+/H+ antiporter 1
NhaB                 PF06450.7    515 sp|P0AFA7|NHAB_ECOLI -            513         0 1016.9  26.1   1   1         0         0 1016.7  26.1     1   514     1   511     1   512 1.00 Bacterial Na+/H+ antiporter B (NhaB)
CitMHS               PF03600.11   351 sp|P0AFA7|NHAB_ECOLI -            513   6.9e-09   34.7   3.9   2   3   1.4e-12   6.9e-09   34.7   3.9   132   346   200   436   192   441 0.76 Citrate transporter
DUF106               PF01956.11   168 sp|P0AFA7|NHAB_ECOLI -            513      0.15   11.6   0.0   3   4     3e-05      0.15   11.6   0.0     6    67   238   298   235   302 0.92 Integral membrane protein DUF106
Na_H_Exchanger       PF00999.16   380 sp|P76007|NHAP2_ECOLI -            578   1.2e-57  195.2  45.6   1   1     3e-61   1.5e-57  194.8  45.6     3   379    16   388    11   389 0.95 Sodium/hydrogen exchanger family
TrkA_C               PF02080.16    71 sp|P76007|NHAP2_ECOLI -            578   1.1e-11   44.1   0.0   1   1     5e-15   2.5e-11   43.0   0.0     5    70   420   483   417   484 0.94 TrkA-C domain
CorC_HlyC            PF03471.12    81 sp|P76007|NHAP2_ECOLI -            578   1.4e-09   37.5   0.1   1   1   5.7e-13   2.8e-09   36.6   0.1     2    79   493   571   492   573 0.86 Transporter associated domain
Acetyltransf_2       PF00797.12   240 sp|P77567|NHOA_ECOLI -            281   3.4e-84  282.1   0.2   1   1   2.7e-88     4e-84  281.9   0.2     1   237    21   256    21   259 0.97 N-acetyltransferase
POR_N                PF01855.14   230 sp|P52647|NIFJ_ECOLI -           1174   2.6e-80  269.2   1.1   1   1   6.1e-83   4.1e-80  268.5   1.1     2   230    13   244    12   244 0.98 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
POR                  PF01558.13   173 sp|P52647|NIFJ_ECOLI -           1174   4.9e-30  104.6   0.0   1   1   1.4e-32   9.4e-30  103.7   0.0     1   173   426   610   426   610 0.90 Pyruvate ferredoxin/flavodoxin oxidoreductase
EKR                  PF10371.4     60 sp|P52647|NIFJ_ECOLI -           1174   1.9e-23   81.8   0.0   1   1   6.1e-26   4.1e-23   80.7   0.0     6    59   625   678   620   679 0.93 Domain of unknown function
Fer4_7               PF12838.2     52 sp|P52647|NIFJ_ECOLI -           1174     2e-10   40.8   8.8   1   1     3e-13     2e-10   40.8   8.8     2    50   689   757   688   758 0.72 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|P52647|NIFJ_ECOLI -           1174   3.8e-10   39.8   5.0   1   2   3.7e-07   0.00025   21.2   0.7    14    55   667   704   662   704 0.77 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|P52647|NIFJ_ECOLI -           1174   3.8e-10   39.8   5.0   2   2   1.1e-06   0.00077   19.6   0.3     2    31   745   774   713   847 0.70 4Fe-4S dicluster domain
Fer4                 PF00037.22    24 sp|P52647|NIFJ_ECOLI -           1174   5.1e-09   35.3  20.6   1   2   2.8e-08   1.9e-05   24.0   1.4     2    24   683   705   682   705 0.93 4Fe-4S binding domain
Fer4                 PF00037.22    24 sp|P52647|NIFJ_ECOLI -           1174   5.1e-09   35.3  20.6   2   2   9.9e-08   6.7e-05   22.3   3.9     3    20   740   757   738   758 0.89 4Fe-4S binding domain
Fer4_21              PF14697.1     59 sp|P52647|NIFJ_ECOLI -           1174   5.3e-09   35.7  11.0   1   1   9.1e-11   6.1e-08   32.3  11.0     4    55   685   759   682   761 0.72 4Fe-4S dicluster domain
TPP_enzyme_C         PF02775.16   153 sp|P52647|NIFJ_ECOLI -           1174   6.6e-09   35.5   0.1   1   1   3.1e-11   2.1e-08   33.8   0.0    46   152   954  1066   939  1067 0.89 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
Fer4_16              PF13484.1     67 sp|P52647|NIFJ_ECOLI -           1174   3.2e-08   34.2   7.1   1   1   1.5e-10     1e-07   32.5   7.1     2    66   689   757   688   758 0.59 4Fe-4S double cluster binding domain
Fer4_6               PF12837.2     24 sp|P52647|NIFJ_ECOLI -           1174   6.4e-08   32.1  18.8   1   2   1.9e-08   1.3e-05   24.8   2.5     1    24   681   704   681   704 0.94 4Fe-4S binding domain
Fer4_6               PF12837.2     24 sp|P52647|NIFJ_ECOLI -           1174   6.4e-08   32.1  18.8   2   2   2.7e-06    0.0018   18.0   2.1     4    21   740   757   737   767 0.88 4Fe-4S binding domain
Fer4_10              PF13237.1     52 sp|P52647|NIFJ_ECOLI -           1174   9.6e-08   31.7  22.5   1   2   1.3e-09     9e-07   28.5  10.9     3    52   683   756   681   756 0.84 4Fe-4S dicluster domain
Fer4_10              PF13237.1     52 sp|P52647|NIFJ_ECOLI -           1174   9.6e-08   31.7  22.5   2   2   2.1e-06    0.0014   18.3   3.8     4    22   740   768   737   824 0.59 4Fe-4S dicluster domain
Fer4_17              PF13534.1     61 sp|P52647|NIFJ_ECOLI -           1174   1.3e-06   28.6   5.3   1   1     2e-09   1.3e-06   28.6   5.3     2    58   689   757   670   760 0.76 4Fe-4S dicluster domain
Fer4_2               PF12797.2     22 sp|P52647|NIFJ_ECOLI -           1174   3.9e-06   26.4  17.0   1   2   7.6e-06    0.0052   16.6   2.4     3    21   682   700   680   701 0.89 4Fe-4S binding domain
Fer4_2               PF12797.2     22 sp|P52647|NIFJ_ECOLI -           1174   3.9e-06   26.4  17.0   2   2   3.3e-06    0.0022   17.8   3.2     7    22   742   757   736   757 0.89 4Fe-4S binding domain
Fer4_18              PF13746.1     69 sp|P52647|NIFJ_ECOLI -           1174   4.9e-06   26.8   6.3   1   2   0.00039      0.27   11.7   0.3    48    64   685   701   661   705 0.80 4Fe-4S dicluster domain
Fer4_18              PF13746.1     69 sp|P52647|NIFJ_ECOLI -           1174   4.9e-06   26.8   6.3   2   2   8.7e-06    0.0059   17.0   0.4    48    64   741   757   714   759 0.80 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|P52647|NIFJ_ECOLI -           1174   1.2e-05   25.2  11.9   1   2   1.8e-08   1.2e-05   25.2  11.9     4    55   688   757   685   759 0.68 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|P52647|NIFJ_ECOLI -           1174   1.2e-05   25.2  11.9   2   2   0.00014     0.091   12.8   5.4     3    47   743   823   741   824 0.55 4Fe-4S dicluster domain
KorB                 PF08535.5     93 sp|P52647|NIFJ_ECOLI -           1174     0.013   15.6   0.9   1   1   0.00011     0.073   13.2   0.3    44    91   894   941   889   943 0.92 KorB domain
Transketolase_C      PF02780.15   124 sp|P52647|NIFJ_ECOLI -           1174     0.017   15.0   0.4   1   1   0.00012     0.078   12.9   0.0    10    78   265   333   260   350 0.89 Transketolase, C-terminal domain
Fer4_15              PF13459.1     65 sp|P52647|NIFJ_ECOLI -           1174     0.025   15.1   7.5   2   2   0.00092      0.62   10.6   0.5     6    20   743   757   739   781 0.87 4Fe-4S single cluster domain
Fer4_4               PF12800.2     17 sp|P52647|NIFJ_ECOLI -           1174     0.026   14.8  19.5   1   2   0.00068      0.46   10.9   2.2     2    15   687   700   686   708 0.92 4Fe-4S binding domain
Fer4_4               PF12800.2     17 sp|P52647|NIFJ_ECOLI -           1174     0.026   14.8  19.5   2   2   6.2e-05     0.042   14.2   3.5     2    16   743   757   742   761 0.90 4Fe-4S binding domain
HEAT_2               PF13646.1     88 sp|P52647|NIFJ_ECOLI -           1174      0.17   12.1   1.4   1   1     0.001      0.69   10.2   1.4    16    69   893   948   889   957 0.74 HEAT repeats
Fer4_13              PF13370.1     58 sp|P52647|NIFJ_ECOLI -           1174      0.19   12.1  10.2   2   2    0.0008      0.54   10.6   0.6     4    25   743   764   740   783 0.76 4Fe-4S single cluster domain
Fer4_3               PF12798.2     15 sp|P52647|NIFJ_ECOLI -           1174      0.64   10.7  28.4   2   2   7.1e-05     0.048   14.2   5.2     1    13   745   757   745   759 0.93 4Fe-4S binding domain
BPD_transp_1         PF00528.17   185 sp|P33591|NIKB_ECOLI -            314   9.2e-45  152.4   9.9   2   2   1.2e-48   9.2e-45  152.4   9.9     2   185   117   308   116   308 0.99 Binding-protein-dependent transport system inner membrane component
Renin_r              PF07850.9     98 sp|P33591|NIKB_ECOLI -            314     0.055   13.8   1.1   3   3   7.4e-06     0.055   13.8   1.1    41    81   264   304   250   307 0.92 Renin receptor-like protein
BPD_transp_1         PF00528.17   185 sp|P0AFA9|NIKC_ECOLI -            277   7.4e-29  100.5  11.6   2   2     1e-32   7.4e-29  100.5  11.6     1   183    89   271    86   273 0.98 Binding-protein-dependent transport system inner membrane component
OppC_N               PF12911.2     56 sp|P0AFA9|NIKC_ECOLI -            277    0.0016   17.7   0.4   1   1   2.2e-07    0.0016   17.7   0.4    20    55    13    48     5    49 0.88 N-terminal TM domain of oligopeptide transport permease C
ABC_tran             PF00005.22   137 sp|P33593|NIKD_ECOLI -            254   1.3e-22   80.5   0.0   1   1     1e-25   1.9e-22   80.0   0.0     2   136    20   168    19   169 0.93 ABC transporter
AAA_21               PF13304.1    303 sp|P33593|NIKD_ECOLI -            254   6.6e-05   23.0   0.3   2   2   2.3e-07   0.00042   20.3   0.0   231   298   135   200   132   205 0.86 AAA domain
AAA_22               PF13401.1    131 sp|P33593|NIKD_ECOLI -            254    0.0025   17.9   0.1   1   1   4.6e-06    0.0085   16.2   0.1     3   125    28   200    26   207 0.70 AAA domain
SMC_N                PF02463.14   220 sp|P33593|NIKD_ECOLI -            254    0.0053   16.0   0.7   1   1   2.2e-05     0.041   13.1   0.7    26   211    31   213     7   222 0.64 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P33593|NIKD_ECOLI -            254    0.0063   16.0   0.2   1   1   7.7e-06     0.014   14.8   0.2    15    47    22    53    18    61 0.76 P-loop containing region of AAA domain
oligo_HPY            PF08352.7     64 sp|P33593|NIKD_ECOLI -            254     0.025   14.9   0.0   1   1   2.6e-05     0.048   14.0   0.0     1    25   220   244   220   249 0.93 Oligopeptide/dipeptide transporter, C-terminal region
AAA_25               PF13481.1    194 sp|P33593|NIKD_ECOLI -            254     0.032   13.6   0.5   1   1   4.3e-05      0.08   12.3   0.1    23    55    16    51     4    73 0.82 AAA domain
AAA_16               PF13191.1    185 sp|P33593|NIKD_ECOLI -            254      0.14   12.1   1.3   1   1   0.00013      0.24   11.3   1.2    18    45    23    50     8   208 0.76 AAA ATPase domain
SBP_bac_5            PF00496.17   374 sp|P33590|NIKA_ECOLI -            524   2.1e-88  296.7   2.6   1   1   1.6e-92   2.4e-88  296.4   2.6     2   370    68   437    67   441 0.90 Bacterial extracellular solute-binding proteins, family 5 Middle
ABC_tran             PF00005.22   137 sp|P33594|NIKE_ECOLI -            268   2.4e-39  134.7   0.0   1   1   5.2e-42   3.4e-39  134.2   0.0     1   136    28   179    28   180 0.98 ABC transporter
AAA_21               PF13304.1    303 sp|P33594|NIKE_ECOLI -            268   1.8e-07   31.4   0.1   1   1   2.4e-08   1.6e-05   25.0   0.1     3   302    42   215    40   216 0.78 AAA domain
AAA_22               PF13401.1    131 sp|P33594|NIKE_ECOLI -            268   4.5e-06   26.8   0.6   1   1   3.6e-08   2.3e-05   24.5   0.6     5   130    39   217    35   218 0.75 AAA domain
AAA_16               PF13191.1    185 sp|P33594|NIKE_ECOLI -            268     1e-05   25.5   4.3   1   1   3.1e-08     2e-05   24.6   4.3     6   163    21   183    18   215 0.54 AAA ATPase domain
AAA_10               PF12846.2    304 sp|P33594|NIKE_ECOLI -            268     4e-05   23.1   0.5   1   2   0.00041      0.26   10.6   0.1     4    23    41    60    38    71 0.83 AAA-like domain
AAA_10               PF12846.2    304 sp|P33594|NIKE_ECOLI -            268     4e-05   23.1   0.5   2   2   0.00031       0.2   11.0   0.0   214   266   158   215    76   233 0.80 AAA-like domain
SMC_N                PF02463.14   220 sp|P33594|NIKE_ECOLI -            268   0.00014   21.1   0.0   1   1   4.3e-07   0.00028   20.2   0.0    26   209    40   222    28   232 0.71 RecF/RecN/SMC N terminal domain
DUF258               PF03193.11   161 sp|P33594|NIKE_ECOLI -            268   0.00021   20.5   0.0   1   1   5.5e-07   0.00036   19.7   0.0    22    67    24    70    12    75 0.84 Protein of unknown function, DUF258
Sigma54_activat      PF00158.21   168 sp|P33594|NIKE_ECOLI -            268    0.0028   17.1   0.4   1   2   4.8e-05     0.031   13.7   0.0     6    47    22    63    18    86 0.80 Sigma-54 interaction domain
AAA_29               PF13555.1     62 sp|P33594|NIKE_ECOLI -            268     0.011   15.2   0.1   1   1   3.2e-05     0.021   14.3   0.1    19    39    35    54    24    62 0.83 P-loop containing region of AAA domain
AAA_18               PF13238.1    129 sp|P33594|NIKE_ECOLI -            268     0.018   15.3   0.0   1   1   5.2e-05     0.033   14.4   0.0     1    64    41   100    41   148 0.68 AAA domain
AAA_17               PF13207.1    121 sp|P33594|NIKE_ECOLI -            268     0.019   15.7   0.3   1   1   5.3e-05     0.034   14.9   0.3     2    20    41    59    40   221 0.83 AAA domain
Sigma54_activ_2      PF14532.1    138 sp|P33594|NIKE_ECOLI -            268     0.034   14.1   0.1   1   1   0.00032      0.21   11.6   0.0    10    51    27    68    22   114 0.80 Sigma-54 interaction domain
MMR_HSR1             PF01926.18   116 sp|P33594|NIKE_ECOLI -            268     0.043   13.7   0.1   1   1   0.00013     0.082   12.8   0.1     2    21    41    60    40   140 0.86 50S ribosome-binding GTPase
NB-ARC               PF00931.17   287 sp|P33594|NIKE_ECOLI -            268     0.049   12.4   0.0   1   1   0.00015     0.097   11.5   0.0     7    37    26    56    21    67 0.79 NB-ARC domain
AAA_25               PF13481.1    194 sp|P33594|NIKE_ECOLI -            268     0.073   12.4   1.3   1   1   0.00072      0.46    9.8   1.3    30    54    35    59    25   211 0.68 AAA domain
PRK                  PF00485.13   194 sp|P33594|NIKE_ECOLI -            268     0.079   12.5   0.0   1   1   0.00018      0.11   11.9   0.0     3    78    42   118    40   131 0.76 Phosphoribulokinase / Uridine kinase family
NACHT                PF05729.7    166 sp|P33594|NIKE_ECOLI -            268     0.083   12.5   0.1   1   1   0.00013     0.083   12.5   0.1     2    21    40    59    39    67 0.90 NACHT domain
AAA                  PF00004.24   132 sp|P33594|NIKE_ECOLI -            268     0.085   13.0   0.2   1   1   0.00048      0.31   11.2   0.1     2    21    42    61    41   181 0.72 ATPase family associated with various cellular activities (AAA)
SbcCD_C              PF13558.1     90 sp|P33594|NIKE_ECOLI -            268     0.094   12.6   0.0   1   1   0.00086      0.55   10.1   0.0    63    89   169   195   130   196 0.78 Putative exonuclease SbcCD, C subunit
AAA_5                PF07728.9    139 sp|P33594|NIKE_ECOLI -            268      0.11   12.2   0.5   1   1   0.00054      0.35   10.5   0.2     2    19    41    58    40    68 0.90 AAA domain (dynein-related subfamily)
DUF87                PF01935.12   229 sp|P33594|NIKE_ECOLI -            268      0.11   12.2   0.3   1   1   0.00037      0.24   11.1   0.3    26    44    41    59    28    61 0.89 Domain of unknown function DUF87
AAA_28               PF13521.1    163 sp|P33594|NIKE_ECOLI -            268      0.15   12.0   0.1   1   1   0.00047       0.3   11.0   0.1     2    39    41    84    40   179 0.83 AAA domain
G-alpha              PF00503.15   389 sp|P33594|NIKE_ECOLI -            268      0.16   10.6   0.0   1   1   0.00025      0.16   10.6   0.0    60   121    40   114    23   225 0.78 G-protein alpha subunit
NikR_C               PF08753.6     79 sp|P0A6Z6|NIKR_ECOLI -            133   3.5e-30  103.7   4.0   1   1   1.4e-33   5.1e-30  103.1   4.0     2    78    54   130    53   131 0.97 NikR C terminal nickel binding domain
RHH_1                PF01402.16    39 sp|P0A6Z6|NIKR_ECOLI -            133   2.5e-10   39.7   0.5   1   1   1.1e-13     4e-10   39.1   0.5     1    38     3    41     3    42 0.95 Ribbon-helix-helix protein, copG family
RHH_3                PF12651.2     44 sp|P0A6Z6|NIKR_ECOLI -            133     0.033   13.9   0.1   1   1   1.7e-05     0.063   13.0   0.1     3    23     2    22     2    24 0.92 Ribbon-helix-helix domain
NinE                 PF05322.6     60 sp|Q47270|NINE_ECOLI -             56    0.0012   18.5   0.0   1   1   9.6e-08    0.0014   18.2   0.0    25    59    19    54    15    55 0.88 NINE Protein
Pyr_redox_2          PF07992.9    201 sp|P08201|NIRB_ECOLI -            847   2.2e-36  125.6   0.0   1   1   9.8e-39   9.7e-36  123.5   0.0     1   199     5   285     5   287 0.95 Pyridine nucleotide-disulphide oxidoreductase
NIR_SIR              PF01077.17   157 sp|P08201|NIRB_ECOLI -            847   3.2e-27   94.8   0.1   1   1   8.7e-30   8.6e-27   93.4   0.1     2   150   632   770   631   776 0.94 Nitrite and sulphite reductase 4Fe-4S domain
Fer2_BFD             PF04324.10    55 sp|P08201|NIRB_ECOLI -            847   3.1e-21   75.1   4.8   1   2   1.8e-18   1.7e-15   56.7   2.8     2    53   423   472   422   474 0.93 BFD-like [2Fe-2S] binding domain
Fer2_BFD             PF04324.10    55 sp|P08201|NIRB_ECOLI -            847   3.1e-21   75.1   4.8   2   2     3e-06     0.003   17.5   0.0     4    55   486   536   484   536 0.95 BFD-like [2Fe-2S] binding domain
Pyr_redox            PF00070.22    80 sp|P08201|NIRB_ECOLI -            847   1.5e-15   57.3   0.7   2   2   1.5e-18   1.5e-15   57.3   0.7     2    72   148   219   147   229 0.91 Pyridine nucleotide-disulphide oxidoreductase
NIR_SIR_ferr         PF03460.12    69 sp|P08201|NIRB_ECOLI -            847   4.8e-12   45.3   0.0   1   1     1e-14   9.9e-12   44.3   0.0     3    68   560   622   558   623 0.95 Nitrite/Sulfite reductase ferredoxin-like half domain
Pyr_redox_3          PF13738.1    203 sp|P08201|NIRB_ECOLI -            847   4.1e-08   33.5   0.3   1   3   5.1e-09   5.1e-06   26.7   0.1    77   196    54   174    42   181 0.83 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P08201|NIRB_ECOLI -            847   4.1e-08   33.5   0.3   2   3     7e-05     0.069   13.2   0.3     1    49   149   207   149   230 0.76 Pyridine nucleotide-disulphide oxidoreductase
GIDA                 PF01134.17   392 sp|P08201|NIRB_ECOLI -            847    0.0027   16.6   0.2   2   2   3.9e-05     0.039   12.8   0.2     4    35   150   188   148   217 0.86 Glucose inhibited division protein A
AlaDh_PNT_C          PF01262.16   168 sp|P08201|NIRB_ECOLI -            847     0.008   15.7   1.1   1   1     1e-05    0.0099   15.4   0.1    24    76   149   202   142   231 0.87 Alanine dehydrogenase/PNT, C-terminal domain
K_oxygenase          PF13434.1    341 sp|P08201|NIRB_ECOLI -            847     0.031   13.2   0.0   1   1   0.00011      0.11   11.4   0.0   140   208    94   163    75   186 0.78 L-lysine 6-monooxygenase (NADPH-requiring)
NAD_binding_8        PF13450.1     68 sp|P08201|NIRB_ECOLI -            847      0.05   13.6   0.0   1   1   0.00024      0.23   11.4   0.1     1    26   150   175   150   206 0.91 NAD(P)-binding Rossmann-like domain
FAD_binding_3        PF01494.14   356 sp|P08201|NIRB_ECOLI -            847      0.13   11.3   2.0   1   1   0.00013      0.13   11.2   0.9     5    31   149   175   147   183 0.95 FAD binding domain
Form_Nir_trans       PF01226.12   250 sp|P0AC26|NIRC_ECOLI -            268   5.4e-62  208.9  28.1   1   1   4.3e-66   6.4e-62  208.6  28.1    16   249    20   248     4   249 0.92 Formate/nitrite transporter
Lipoprotein_9        PF03180.9    237 sp|P04846|NLPA_ECOLI -            272   5.8e-92  306.8   0.2   1   1   1.3e-95   6.6e-92  306.7   0.2     1   237    34   272    34   272 1.00 NLPA lipoprotein
OpuAC                PF04069.7    257 sp|P04846|NLPA_ECOLI -            272      0.01   15.2   0.4   1   2   4.6e-06     0.023   14.0   0.1     1   108    32   128    32   147 0.70 Substrate binding domain of ABC-type glycine betaine transport system
DUF2731              PF10806.3    125 sp|P04846|NLPA_ECOLI -            272      0.11   12.7   0.1   2   2   0.00012      0.58   10.4   0.0    58    90   122   155    74   178 0.87 Protein of unknown function (DUF2731)
NLPC_P60             PF00877.14   105 sp|P23898|NLPC_ECOLI -            154   4.4e-31  106.8   0.1   1   1   1.8e-34   5.2e-31  106.5   0.1     1   105    47   153    47   153 0.98 NlpC/P60 family
DUF1175              PF06672.6    217 sp|P23898|NLPC_ECOLI -            154    0.0013   18.1   0.0   2   2   3.5e-06      0.01   15.1   0.0   133   162    93   122    83   147 0.83 Protein of unknown function (DUF1175)
E1-E2_ATPase         PF00122.15   230 sp|P23898|NLPC_ECOLI -            154     0.051   12.5   0.0   1   1   2.5e-05     0.073   12.0   0.0    44    64    89   109    66   110 0.84 E1-E2 ATPase
LPAM_1               PF08139.7     25 sp|P23898|NLPC_ECOLI -            154     0.056   13.6   2.3   1   1   3.5e-05       0.1   12.8   2.3     9    25     2    18     1    18 0.85 Prokaryotic membrane lipoprotein lipid attachment site
N_NLPC_P60           PF12912.2    124 sp|P23898|NLPC_ECOLI -            154     0.086   12.9   0.0   1   1   7.6e-05      0.23   11.5   0.0     2    27     4    29     3    46 0.76 NLPC_P60 stabilising domain, N term
Peptidase_M23        PF01551.17    96 sp|P0ADA3|NLPD_ECOLI -            379   1.2e-30  105.3   0.9   3   3   2.5e-34   1.2e-30  105.3   0.9     3    96   279   372   277   372 0.96 Peptidase family M23
LysM                 PF01476.15    44 sp|P0ADA3|NLPD_ECOLI -            379   9.1e-11   41.4   0.4   1   1     4e-14     2e-10   40.3   0.1     1    43   123   165   123   166 0.98 LysM domain
Biotin_lipoyl_2      PF13533.1     50 sp|P0ADA3|NLPD_ECOLI -            379   0.00024   20.7   0.0   2   2   4.6e-05      0.23   11.1   0.0    16    33   332   349   330   354 0.87 Biotin-lipoyl like
Porin_1              PF00267.16   337 sp|P21420|NMPC_ECOLI -            365  1.5e-145  484.7  28.1   1   1  2.3e-149  1.7e-145  484.5  28.1     1   337    29   365    29   365 0.98 Gram-negative porin
Carb_kinase          PF01256.12   242 sp|P31806|NNR_ECOLI  -            515   6.7e-83  277.6   4.2   2   2   1.1e-85   4.1e-82  275.1   1.7     2   242   258   496   257   496 0.99 Carbohydrate kinase
YjeF_N               PF03853.10   169 sp|P31806|NNR_ECOLI  -            515   8.4e-47  158.9   0.0   1   1   4.1e-50   1.5e-46  158.0   0.0     3   169    40   199    38   199 0.98 YjeF-related protein N-terminus
HK                   PF02110.10   246 sp|P31806|NNR_ECOLI  -            515    0.0016   17.6   0.2   1   1   8.3e-07    0.0031   16.7   0.2   134   244   388   498   374   500 0.88 Hydroxyethylthiazole kinase family
SAM_MT               PF04445.8    235 sp|P31806|NNR_ECOLI  -            515       0.1   11.7   0.0   2   2   6.9e-05      0.26   10.4   0.0   116   219   283   388   276   397 0.81 Putative SAM-dependent methyltransferase
Lactamase_B          PF00753.22   194 sp|Q46877|NORV_ECOLI -            479     1e-27   97.0   0.2   1   1   5.7e-31   1.4e-27   96.6   0.2     2   158    31   179    30   244 0.91 Metallo-beta-lactamase superfamily
Rubredoxin           PF00301.15    47 sp|Q46877|NORV_ECOLI -            479   1.3e-19   69.8   2.7   1   1   9.5e-23   2.3e-19   68.9   2.7     1    47   425   471   425   471 0.98 Rubredoxin
Flavodoxin_1         PF00258.20   143 sp|Q46877|NORV_ECOLI -            479   1.7e-11   44.2   0.0   1   1   1.2e-14     3e-11   43.4   0.0     1   141   256   387   256   389 0.79 Flavodoxin
Lactamase_B_2        PF12706.2    194 sp|Q46877|NORV_ECOLI -            479   1.1e-05   25.0   1.4   1   1   8.1e-09     2e-05   24.2   1.4     2   137    45   166    44   187 0.75 Beta-lactamase superfamily domain
Lactamase_B_3        PF13483.1    163 sp|Q46877|NORV_ECOLI -            479    0.0043   16.7   0.1   1   1   3.3e-06    0.0083   15.8   0.1     7    76    35   136    30   179 0.75 Beta-lactamase superfamily domain
RNA_pol_Rpb2_6       PF00562.23   386 sp|Q46877|NORV_ECOLI -            479    0.0061   15.3   0.0   1   1   3.2e-06     0.008   14.9   0.0   268   310   218   289   215   444 0.78 RNA polymerase Rpb2, domain 6
Pyr_redox_2          PF07992.9    201 sp|P37596|NORW_ECOLI -            377   3.6e-27   95.5   0.0   1   1     3e-29   2.2e-26   92.9   0.0     2   199     5   277     4   279 0.90 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox            PF00070.22    80 sp|P37596|NORW_ECOLI -            377   2.6e-18   66.1   0.0   2   2   6.3e-20   4.7e-17   62.1   0.0     1    76   143   217   143   224 0.95 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P37596|NORW_ECOLI -            377   7.6e-11   42.4   0.0   1   2   6.7e-09     5e-06   26.7   0.0    77   199    52   173    20   177 0.76 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P37596|NORW_ECOLI -            377   7.6e-11   42.4   0.0   2   2   0.00011     0.081   12.9   0.0    82   139   183   240   178   267 0.90 Pyridine nucleotide-disulphide oxidoreductase
K_oxygenase          PF13434.1    341 sp|P37596|NORW_ECOLI -            377   2.8e-10   39.6   0.1   2   3   7.2e-09   5.4e-06   25.5   0.0   139   216    91   167    66   175 0.84 L-lysine 6-monooxygenase (NADPH-requiring)
DAO                  PF01266.19   358 sp|P37596|NORW_ECOLI -            377   4.6e-10   38.9   2.6   2   3   1.2e-05    0.0088   14.9   0.4     2    31   144   173   143   179 0.92 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|P37596|NORW_ECOLI -            377   4.6e-10   38.9   2.6   3   3   4.4e-06    0.0033   16.3   0.1   147   213   183   250   177   281 0.84 FAD dependent oxidoreductase
HI0933_like          PF03486.9    409 sp|P37596|NORW_ECOLI -            377   1.2e-06   27.2   0.6   2   3    0.0013      0.98    7.8   0.3     2    36   143   177   142   181 0.92 HI0933-like protein
HI0933_like          PF03486.9    409 sp|P37596|NORW_ECOLI -            377   1.2e-06   27.2   0.6   3   3   0.00015      0.11   10.8   0.0   113   163   187   236   183   243 0.92 HI0933-like protein
NAD_binding_7        PF13241.1    103 sp|P37596|NORW_ECOLI -            377   3.9e-06   27.0   0.0   2   2   8.3e-07   0.00062   19.9   0.0     7    69   141   236   136   269 0.63 Putative NAD(P)-binding
NAD_binding_9        PF13454.1    156 sp|P37596|NORW_ECOLI -            377   3.5e-05   23.6   5.2   2   4   0.00024      0.18   11.5   0.0   110   155    66   109    43   110 0.80 FAD-NAD(P)-binding
NAD_binding_9        PF13454.1    156 sp|P37596|NORW_ECOLI -            377   3.5e-05   23.6   5.2   4   4   0.00056      0.42   10.3   0.1   106   154   188   236   183   238 0.79 FAD-NAD(P)-binding
3HCDH_N              PF02737.13   180 sp|P37596|NORW_ECOLI -            377    0.0001   22.0   0.1   1   1   4.3e-07   0.00032   20.4   0.1     2    39   144   181   143   238 0.69 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Lycopene_cycl        PF05834.7    374 sp|P37596|NORW_ECOLI -            377   0.00013   20.9   2.5   3   3   0.00077      0.57    9.0   0.0    90   158   186   257   178   268 0.83 Lycopene cyclase protein
TrkA_N               PF02254.13   116 sp|P37596|NORW_ECOLI -            377    0.0025   17.8   0.2   2   2   0.00081       0.6   10.1   0.1     1    37   144   180   144   241 0.89 TrkA-N domain
GIDA                 PF01134.17   392 sp|P37596|NORW_ECOLI -            377    0.0041   16.0   0.5   2   2   0.00013     0.097   11.5   0.3     2    34   144   176   143   199 0.85 Glucose inhibited division protein A
FAD_binding_3        PF01494.14   356 sp|P37596|NORW_ECOLI -            377    0.0043   16.1   2.7   1   2   4.4e-05     0.033   13.2   0.3     3    34   143   174   141   178 0.93 FAD binding domain
NAD_binding_8        PF13450.1     68 sp|P37596|NORW_ECOLI -            377     0.019   14.9   0.0   1   1   0.00016      0.12   12.4   0.0     1    30   146   175   146   203 0.94 NAD(P)-binding Rossmann-like domain
ThiF                 PF00899.16   136 sp|P37596|NORW_ECOLI -            377     0.025   14.3   0.4   1   1   8.7e-05     0.064   13.0   0.4     3    34   142   172   140   180 0.90 ThiF family
ApbA                 PF02558.11   151 sp|P37596|NORW_ECOLI -            377     0.078   12.4   1.6   1   1   0.00035      0.26   10.7   0.3     1    31   144   174   144   181 0.90 Ketopantoate reductase PanE/ApbA
UDPG_MGDP_dh_N       PF03721.9    185 sp|P37596|NORW_ECOLI -            377      0.16   11.3   0.0   1   1   0.00054       0.4   10.0   0.0     2    39   143   180   142   234 0.81 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
SIR2                 PF02146.12   178 sp|P75960|NPD_ECOLI  -            242   1.6e-49  168.0   0.0   1   1   2.7e-53     2e-49  167.7   0.0     1   178    11   184    11   184 0.90 Sir2 family
Glyco_transf_28      PF03033.15   139 sp|P75960|NPD_ECOLI  -            242    0.0031   17.2   0.1   2   2   5.4e-06      0.04   13.6   0.0     3    33   173   204   172   228 0.82 Glycosyltransferase family 28 N-terminal domain
FMN_red              PF03358.10   152 sp|P0A8G6|NQOR_ECOLI -            198   3.9e-14   52.4   0.0   1   1   2.1e-17   5.2e-14   52.0   0.0    14   144    13   143     2   149 0.84 NADPH-dependent FMN reductase
Flavodoxin_1         PF00258.20   143 sp|P0A8G6|NQOR_ECOLI -            198   2.4e-11   43.8   0.1   1   1   1.7e-14   4.1e-11   43.0   0.1     1   138     6   130     6   135 0.81 Flavodoxin
Flavodoxin_5         PF12724.2    143 sp|P0A8G6|NQOR_ECOLI -            198   2.9e-06   27.3   0.0   2   2   8.3e-08    0.0002   21.3   0.0    37    94    62   124    41   139 0.82 Flavodoxin domain
Flavodoxin_2         PF02525.12   199 sp|P0A8G6|NQOR_ECOLI -            198   9.9e-06   25.1   0.0   1   1   5.1e-09   1.3e-05   24.8   0.0     2   138     3   117     2   147 0.74 Flavodoxin-like fold
Flavodoxin_4         PF12682.2    156 sp|P0A8G6|NQOR_ECOLI -            198    0.0012   18.2   0.0   1   1   1.1e-05     0.028   13.7   0.0     1    99     3    94     3   124 0.73 Flavodoxin
Flavodoxin_3         PF12641.2    160 sp|P0A8G6|NQOR_ECOLI -            198     0.064   12.6   0.0   2   2   0.00012      0.29   10.5   0.0    20    64    49    93    37   121 0.87 Flavodoxin domain
NRDD                 PF13597.1    546 sp|P28903|NRDD_ECOLI -            712   8.7e-79  265.0   0.0   1   1   5.7e-81   1.7e-77  260.7   0.0     3   545   115   705   112   706 0.84 Anaerobic ribonucleoside-triphosphate reductase
Gly_radical          PF01228.16   106 sp|P28903|NRDD_ECOLI -            712   5.9e-27   94.1   0.0   1   1   8.5e-30   2.5e-26   92.0   0.0     2   104   582   685   581   687 0.98 Glycine radical
ATP-cone             PF03477.11    90 sp|P28903|NRDD_ECOLI -            712     6e-21   74.6   1.7   1   2   6.7e-24     2e-20   73.0   0.7     2    89     4    89     3    90 0.93 ATP cone domain
HypA                 PF01155.14   113 sp|P28903|NRDD_ECOLI -            712      0.56    9.9   4.1   2   2    0.0003      0.88    9.2   2.2    72    98   643   671   637   678 0.83 Hydrogenase expression/synthesis hypA family
Zn_Tnp_IS1595        PF12760.2     46 sp|P28903|NRDD_ECOLI -            712         4    7.3   7.0   2   2   0.00024      0.73    9.6   2.4    17    36   658   676   655   681 0.80 Transposase zinc-ribbon domain
Fer4_12              PF13353.1    139 sp|P0A9N8|NRDG_ECOLI -            154     5e-51  172.4   0.0   1   1   1.1e-54   5.7e-51  172.2   0.0     1   139    12   151    12   151 0.98 4Fe-4S single cluster domain
Fer4_14              PF13394.1    119 sp|P0A9N8|NRDG_ECOLI -            154   4.6e-32  110.5   0.0   1   1   1.1e-35   5.5e-32  110.2   0.0     1   119    21   130    21   130 0.95 4Fe-4S single cluster domain
Radical_SAM          PF04055.16   166 sp|P0A9N8|NRDG_ECOLI -            154   0.00039   20.6   0.0   1   1   8.9e-08   0.00044   20.4   0.0     3    73    22    93    20   137 0.71 Radical SAM superfamily
Glutaredoxin         PF00462.19    60 sp|P0AC65|NRDH_ECOLI -             81   1.1e-13   50.9   0.0   1   1   4.2e-17   1.3e-13   50.7   0.0     1    57     3    58     3    61 0.95 Glutaredoxin
Thioredoxin_3        PF13192.1     76 sp|P0AC65|NRDH_ECOLI -             81    0.0024   17.6   0.0   1   1   1.2e-06    0.0035   17.1   0.0     1    66     1    66     1    70 0.76 Thioredoxin domain
DUF836               PF05768.9     81 sp|P0AC65|NRDH_ECOLI -             81    0.0027   17.9   0.0   1   1   9.4e-07    0.0028   17.8   0.0     1    57     2    58     2    75 0.80 Glutaredoxin-like domain (DUF836)
GST_N_3              PF13417.1     75 sp|P0AC65|NRDH_ECOLI -             81     0.061   13.5   0.0   1   1   2.6e-05     0.076   13.2   0.0     2    53     6    57     5    63 0.92 Glutathione S-transferase, N-terminal domain
CBS                  PF00571.23    57 sp|P0AC65|NRDH_ECOLI -             81     0.095   12.5   0.0   1   1   7.2e-05      0.21   11.3   0.0    17    36    35    54    30    59 0.91 CBS domain
Flavodoxin_NdrI      PF07972.6    122 sp|P0A772|NRDI_ECOLI -            136   4.3e-47  159.0   0.0   1   1   3.3e-51   4.9e-47  158.8   0.0     1   122     5   123     5   123 0.97 NrdI Flavodoxin like
ATP-cone             PF03477.11    90 sp|P0A8D0|NRDR_ECOLI -            149   2.2e-17   63.2   0.1   1   1     2e-21     3e-17   62.8   0.1     2    89    50   136    49   137 0.98 ATP cone domain
Cytochrom_C552       PF02335.10   435 sp|P0ABK9|NRFA_ECOLI -            478  1.3e-172  574.3   8.0   1   1  1.3e-175  1.7e-172  574.0   8.0     3   433    43   472    41   474 0.98 Cytochrome c552
Cytochrome_C554      PF13435.1    130 sp|P0ABK9|NRFA_ECOLI -            478   7.1e-10   39.0   9.1   1   3   2.6e-06    0.0033   17.4   0.3    48   129   119   213    94   215 0.62 Cytochrome c554 and c-prime
Cytochrome_C554      PF13435.1    130 sp|P0ABK9|NRFA_ECOLI -            478   7.1e-10   39.0   9.1   2   3   9.6e-07    0.0012   18.9   0.1     2    65   160   223   159   240 0.84 Cytochrome c554 and c-prime
Cytochrome_C554      PF13435.1    130 sp|P0ABK9|NRFA_ECOLI -            478   7.1e-10   39.0   9.1   3   3   1.4e-07   0.00017   21.6   4.1    19   105   250   341   236   362 0.61 Cytochrome c554 and c-prime
Cytochrome_C7        PF14522.1     65 sp|P0ABK9|NRFA_ECOLI -            478   1.6e-08   34.0   7.7   1   2   7.2e-06    0.0089   15.6   0.1    11    50   156   223   143   237 0.65 Cytochrome c7
Cytochrome_C7        PF14522.1     65 sp|P0ABK9|NRFA_ECOLI -            478   1.6e-08   34.0   7.7   2   2   3.9e-07   0.00048   19.6   2.2     7    51   274   327   265   338 0.61 Cytochrome c7
Cytochrom_c3_2       PF14537.1     80 sp|P0ABK9|NRFA_ECOLI -            478   2.4e-05   24.5  13.0   2   2   1.5e-06    0.0019   18.5   3.2     2    45   275   331   274   363 0.70 Cytochrome c3
Paired_CXXCH_1       PF09699.5     41 sp|P0ABK9|NRFA_ECOLI -            478   0.00039   19.8  10.8   2   2   9.8e-06     0.012   15.0   0.8     8    40   281   322   275   323 0.89 Doubled CXXCH motif (Paired_CXXCH_1)
Multi-haem_cyto      PF13447.1    267 sp|P0ABK9|NRFA_ECOLI -            478   0.00042   19.4  12.1   1   3   0.00072      0.89    8.5   0.5     2    53   157   232   156   257 0.70 Seven times multi-haem cytochrome CxxCH
Multi-haem_cyto      PF13447.1    267 sp|P0ABK9|NRFA_ECOLI -            478   0.00042   19.4  12.1   3   3   2.6e-05     0.032   13.2   2.4     2    44   279   327   278   368 0.64 Seven times multi-haem cytochrome CxxCH
Cytochrome_CBB3      PF13442.1     67 sp|P0ABK9|NRFA_ECOLI -            478    0.0021   18.1  10.0   4   4   0.00015      0.18   11.9   0.1     9    25   309   334   302   384 0.61 Cytochrome C oxidase, cbb3-type, subunit III
Cytochrom_NNT        PF03264.9    174 sp|P0ABK9|NRFA_ECOLI -            478    0.0037   16.7  17.9   3   4   2.1e-05     0.026   13.9   0.4    46    77   264   292   261   305 0.76 NapC/NirT cytochrome c family, N-terminal region
Dehyd-heme_bind      PF09098.5    167 sp|P0ABK9|NRFA_ECOLI -            478       1.3    8.4   5.2   1   1   0.00034      0.43   10.0   0.2    94   117   308   331   291   344 0.83 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding
NrfD                 PF03916.9    313 sp|P32709|NRFD_ECOLI -            318  1.7e-111  372.6  32.3   1   1  2.6e-115  1.9e-111  372.4  32.3     2   313     5   318     4   318 0.99 Polysulphide reductase, NrfD
UPF0181              PF03701.9     52 sp|P32709|NRFD_ECOLI -            318    0.0018   17.5   0.1   1   1   4.3e-07    0.0032   16.7   0.1    26    46   188   208   185   214 0.86 Uncharacterised protein family (UPF0181)
Cytochrom_C_asm      PF01578.15   214 sp|P32710|NRFE_ECOLI -            552   1.3e-49  168.6  22.0   2   3   8.7e-54   1.3e-49  168.6  22.0     1   212    72   279    72   281 0.97 Cytochrome C assembly protein
CcmH                 PF03918.9    148 sp|P32711|NRFF_ECOLI -            127   2.5e-47  159.5   0.7   1   1     4e-51     3e-47  159.3   0.7     3   125     6   126     4   127 0.91 Cytochrome C biogenesis protein
DUF3797              PF12677.2     49 sp|P32711|NRFF_ECOLI -            127     0.029   13.9   0.0   1   1   6.9e-06     0.051   13.2   0.0    15    34    43    62    33    66 0.88 Domain of unknown function (DUF3797)
NUDIX                PF00293.23   135 sp|P0AFC0|NUDB_ECOLI -            150   6.8e-22   77.5   0.3   1   1   5.3e-26   7.8e-22   77.3   0.3     3   134    10   147     8   148 0.89 NUDIX domain
NUDIX                PF00293.23   135 sp|P32664|NUDC_ECOLI -            257   2.2e-21   75.9   0.1   1   1   4.4e-24   7.2e-21   74.2   0.0     6   125   132   240   128   249 0.90 NUDIX domain
zf-NADH-PPase        PF09297.6     32 sp|P32664|NUDC_ECOLI -            257   3.5e-10   39.2   5.5   1   1   3.6e-13     6e-10   38.4   5.5     1    32    93   124    93   124 0.98 NADH pyrophosphatase zinc ribbon domain
NUDIX-like           PF09296.6     98 sp|P32664|NUDC_ECOLI -            257   4.8e-06   26.8   0.1   1   1   5.7e-09   9.4e-06   25.8   0.1     2    97    11    90    10    91 0.96 NADH pyrophosphatase-like rudimentary NUDIX domain
DZR                  PF12773.2     50 sp|P32664|NUDC_ECOLI -            257     0.013   15.2   1.3   1   1   1.4e-05     0.023   14.5   1.3    11    46    94   130    89   131 0.84 Double zinc ribbon
OrfB_Zn_ribbon       PF07282.6     69 sp|P32664|NUDC_ECOLI -            257     0.043   13.4   1.5   1   1   3.5e-05     0.058   13.0   0.4    15    55    82   122    79   131 0.84 Putative transposase DNA-binding domain
C1_1                 PF00130.17    53 sp|P32664|NUDC_ECOLI -            257       0.1   12.3   2.5   1   1   0.00011      0.18   11.5   2.5     7    38    91   123    88   130 0.90 Phorbol esters/diacylglycerol binding domain (C1 domain)
Zn_ribbon_recom      PF13408.1     58 sp|P32664|NUDC_ECOLI -            257      0.28   11.4   5.5   1   1   0.00044      0.73   10.1   5.5     7    47    97   138    93   140 0.77 Recombinase zinc beta ribbon domain
zf-ribbon_3          PF13248.1     26 sp|P32664|NUDC_ECOLI -            257       1.3    8.2   4.1   1   2   0.00055       0.9    8.8   0.7    15    25    94   104    89   105 0.82 zinc-ribbon domain
NUDIX                PF00293.23   135 sp|P45799|NUDE_ECOLI -            186   3.8e-09   36.3   0.0   1   1   3.3e-13   4.9e-09   35.9   0.0     2    66    47   109    46   175 0.73 NUDIX domain
NUDIX                PF00293.23   135 sp|P77788|NUDG_ECOLI -            135   4.8e-21   74.8   0.2   1   1   1.3e-24   6.5e-21   74.3   0.2     5   132     6   125     3   128 0.83 NUDIX domain
NUDIX_4              PF14815.1    114 sp|P77788|NUDG_ECOLI -            135   1.4e-13   50.3   0.2   1   1   3.6e-17   1.8e-13   49.9   0.2     2   106     8   115     7   118 0.88 NUDIX domain
NUDIX_2              PF13869.1    188 sp|P77788|NUDG_ECOLI -            135     0.017   14.4   0.0   1   1     4e-06      0.02   14.2   0.0    60   102    17    81     3   120 0.66 Nucleotide hydrolase
NUDIX                PF00293.23   135 sp|P52006|NUDI_ECOLI -            141   1.8e-21   76.1   0.1   1   1   2.9e-25   2.2e-21   75.9   0.1     2   130     3   136     2   140 0.88 NUDIX domain
NUDIX                PF00293.23   135 sp|P0AEI6|NUDJ_ECOLI -            153   8.2e-21   74.0   0.2   1   1     7e-25     1e-20   73.7   0.2     2   119     5   115     4   123 0.92 NUDIX domain
NUDIX                PF00293.23   135 sp|P37128|NUDK_ECOLI -            191   3.7e-13   49.2   0.0   1   1   3.4e-17   5.1e-13   48.8   0.0     4   127    47   174    44   184 0.86 NUDIX domain
NUDIX                PF00293.23   135 sp|P43337|NUDL_ECOLI -            192   5.2e-16   58.5   0.0   1   1   4.8e-20   7.2e-16   58.0   0.0     4   124    33   151    29   159 0.87 NUDIX domain
Oxidored_q4          PF00507.14   102 sp|P0AFC3|NUOA_ECOLI -            147   8.7e-27   92.9   1.1   1   1   5.9e-31   8.7e-27   92.9   1.1     2   102    26   125    25   125 0.95 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
Oxidored_q6          PF01058.17   131 sp|P0AFC7|NUOB_ECOLI -            220   2.3e-22   78.9   0.2   1   1   2.2e-26   3.2e-22   78.5   0.2     4   129    64   170    62   172 0.82 NADH ubiquinone oxidoreductase, 20 Kd subunit
Complex1_49kDa       PF00346.14   272 sp|P33599|NUOCD_ECOLI -            596  1.8e-120  401.0   0.0   1   1    3e-124  2.3e-120  400.7   0.0     1   272   325   596   325   596 1.00 Respiratory-chain NADH dehydrogenase, 49 Kd subunit
Complex1_30kDa       PF00329.14   103 sp|P33599|NUOCD_ECOLI -            596   3.2e-34  117.2   0.0   1   1   8.9e-38   6.6e-34  116.2   0.0     4   103    58   167    55   167 0.95 Respiratory-chain NADH dehydrogenase, 30 Kd subunit
2Fe-2S_thioredx      PF01257.14   145 sp|P0AFD1|NUOE_ECOLI -            166     6e-51  171.8   0.0   1   1   4.7e-55     7e-51  171.6   0.0     2   145    23   166    22   166 0.98 Thioredoxin-like [2Fe-2S] ferredoxin
Complex1_51K         PF01512.12   151 sp|P31979|NUOF_ECOLI -            445   1.1e-49  168.0   0.0   1   1   3.2e-53   1.6e-49  167.5   0.0     1   150    54   226    54   227 0.97 Respiratory-chain NADH dehydrogenase 51 Kd subunit
NADH_4Fe-4S          PF10589.4     46 sp|P31979|NUOF_ECOLI -            445     3e-18   64.6   0.0   1   1   1.2e-21   6.1e-18   63.6   0.0     1    46   336   381   336   381 0.97 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
SLBB                 PF10531.4     59 sp|P31979|NUOF_ECOLI -            445   7.4e-08   32.1   0.0   1   1   4.5e-11   2.2e-07   30.6   0.0     5    55   253   296   252   300 0.91 SLBB domain
NADH-G_4Fe-4S_3      PF10588.4     41 sp|P33602|NUOG_ECOLI -            908   5.6e-17   60.6   0.2   1   1   6.8e-20   1.1e-16   59.7   0.2     1    41    88   128    88   128 0.98 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
Fer2_4               PF13510.1     82 sp|P33602|NUOG_ECOLI -            908   2.3e-11   43.3   0.2   1   2   1.7e-13   2.8e-10   39.8   0.1     5    78     3    78     1    82 0.87 2Fe-2S iron-sulfur cluster binding domain
Molybdop_Fe4S4       PF04879.11    55 sp|P33602|NUOG_ECOLI -            908   3.7e-11   42.6   0.1   1   1   6.2e-14     1e-10   41.2   0.1     1    54   221   274   221   275 0.97 Molybdopterin oxidoreductase Fe4S4 domain
Molybdopterin        PF00384.17   432 sp|P33602|NUOG_ECOLI -            908   3.4e-10   39.2   0.0   2   2   4.8e-11     8e-08   31.4   0.0   340   417   562   638   510   643 0.90 Molybdopterin oxidoreductase
Fer2                 PF00111.22    78 sp|P33602|NUOG_ECOLI -            908   2.5e-09   36.7   1.4   1   1   2.8e-12   4.7e-09   35.8   0.2     1    77     4    71     4    72 0.79 2Fe-2S iron-sulfur cluster binding domain
Molydop_binding      PF01568.16   110 sp|P33602|NUOG_ECOLI -            908   3.2e-07   30.1   0.0   1   1   5.1e-10   8.5e-07   28.7   0.0    20    82   829   890   819   904 0.86 Molydopterin dinucleotide binding domain
TPP_enzyme_M         PF00205.17   137 sp|P33602|NUOG_ECOLI -            908    0.0031   17.2   3.2   2   2   5.3e-05     0.087   12.5   2.3     1   118   483   602   483   621 0.70 Thiamine pyrophosphate enzyme, central domain
NADHdh               PF00146.16   311 sp|P0AFD4|NUOH_ECOLI -            325  5.9e-124  413.1  15.7   1   1  4.7e-128    7e-124  412.9  15.7     2   310    14   320    13   321 0.99 NADH dehydrogenase
Fer4                 PF00037.22    24 sp|P0AFD6|NUOI_ECOLI -            180   1.6e-14   52.7  16.5   1   2   6.6e-08   6.1e-05   22.4   8.9     5    24    57    76    56    76 0.95 4Fe-4S binding domain
Fer4                 PF00037.22    24 sp|P0AFD6|NUOI_ECOLI -            180   1.6e-14   52.7  16.5   2   2   6.5e-12     6e-09   35.1   0.8     2    24    93   115    92   115 0.93 4Fe-4S binding domain
Fer4_7               PF12838.2     52 sp|P0AFD6|NUOI_ECOLI -            180   1.5e-12   47.6   8.3   1   1   2.7e-15   2.5e-12   46.9   8.3     1    52    59   113    59   123 0.93 4Fe-4S dicluster domain
Fer4_16              PF13484.1     67 sp|P0AFD6|NUOI_ECOLI -            180   1.4e-10   41.7   6.0   1   2     1e-06   0.00097   19.8   2.9     1    25    59    83    59    90 0.85 4Fe-4S double cluster binding domain
Fer4_16              PF13484.1     67 sp|P0AFD6|NUOI_ECOLI -            180   1.4e-10   41.7   6.0   2   2     1e-07   9.5e-05   23.0   0.1     1    29    98   124    98   167 0.78 4Fe-4S double cluster binding domain
Fer4_21              PF14697.1     59 sp|P0AFD6|NUOI_ECOLI -            180   1.9e-10   40.4   8.3   1   2   4.1e-08   3.8e-05   23.4   4.1    38    58    57    76    47    77 0.89 4Fe-4S dicluster domain
Fer4_21              PF14697.1     59 sp|P0AFD6|NUOI_ECOLI -            180   1.9e-10   40.4   8.3   2   2   8.9e-07   0.00083   19.1   0.1     2    26    93   117    92   135 0.80 4Fe-4S dicluster domain
Fer4_10              PF13237.1     52 sp|P0AFD6|NUOI_ECOLI -            180   2.2e-10   40.1  18.3   1   2   5.9e-10   5.5e-07   29.2  11.4     6    52    57   110    55   110 0.96 4Fe-4S dicluster domain
Fer4_10              PF13237.1     52 sp|P0AFD6|NUOI_ECOLI -            180   2.2e-10   40.1  18.3   2   2   1.2e-07   0.00011   21.9   0.6     3    22    93   115    91   134 0.71 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|P0AFD6|NUOI_ECOLI -            180   2.4e-10   40.5   4.6   1   2   3.4e-07   0.00031   20.9   0.8    27    55    47    75    24    75 0.77 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|P0AFD6|NUOI_ECOLI -            180   2.4e-10   40.5   4.6   2   2   2.8e-07   0.00026   21.1   0.2    39    55    98   114    78   136 0.68 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|P0AFD6|NUOI_ECOLI -            180   4.1e-10   39.5   1.6   1   2   2.1e-06     0.002   18.1   0.3    40    56    54    73    19    87 0.72 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|P0AFD6|NUOI_ECOLI -            180   4.1e-10   39.5   1.6   2   2   2.8e-07   0.00026   20.9   0.1     2    32    96   128    95   167 0.74 4Fe-4S dicluster domain
Fer4_2               PF12797.2     22 sp|P0AFD6|NUOI_ECOLI -            180   1.7e-09   37.0  12.4   1   2   1.5e-06    0.0014   18.3   4.4     7    22    57    72    52    72 0.89 4Fe-4S binding domain
Fer4_2               PF12797.2     22 sp|P0AFD6|NUOI_ECOLI -            180   1.7e-09   37.0  12.4   2   2   4.5e-08   4.2e-05   23.2   1.0     3    22    92   111    90   111 0.91 4Fe-4S binding domain
Fer4_18              PF13746.1     69 sp|P0AFD6|NUOI_ECOLI -            180   1.5e-07   31.7   4.6   1   2   1.4e-06    0.0013   19.0   0.5    43    65    51    73    19    76 0.78 4Fe-4S dicluster domain
Fer4_18              PF13746.1     69 sp|P0AFD6|NUOI_ECOLI -            180   1.5e-07   31.7   4.6   2   2   5.4e-05      0.05   14.0   0.3    50    64    97   111    82   116 0.91 4Fe-4S dicluster domain
Fer4_6               PF12837.2     24 sp|P0AFD6|NUOI_ECOLI -            180   8.7e-07   28.5  17.5   1   2   0.00015      0.14   12.0   9.0     6    24    57    75    57    75 0.94 4Fe-4S binding domain
Fer4_6               PF12837.2     24 sp|P0AFD6|NUOI_ECOLI -            180   8.7e-07   28.5  17.5   2   2   1.5e-07   0.00014   21.5   1.2     3    21    93   111    91   114 0.87 4Fe-4S binding domain
Fer4_4               PF12800.2     17 sp|P0AFD6|NUOI_ECOLI -            180   2.4e-05   24.3  13.5   1   2   7.1e-05     0.066   13.5   5.2     2    16    58    72    57    79 0.92 4Fe-4S binding domain
Fer4_4               PF12800.2     17 sp|P0AFD6|NUOI_ECOLI -            180   2.4e-05   24.3  13.5   2   2   1.5e-05     0.014   15.6   1.1     2    16    97   111    96   121 0.92 4Fe-4S binding domain
Fer4_17              PF13534.1     61 sp|P0AFD6|NUOI_ECOLI -            180   6.2e-05   23.2  10.9   2   2   1.4e-06    0.0013   19.0  11.5     1    58    59   111    59   115 0.80 4Fe-4S dicluster domain
Fer4_13              PF13370.1     58 sp|P0AFD6|NUOI_ECOLI -            180    0.0019   18.5  10.8   1   2     0.001      0.95    9.9   2.8     3    17    57    71    47    76 0.87 4Fe-4S single cluster domain
Fer4_13              PF13370.1     58 sp|P0AFD6|NUOI_ECOLI -            180    0.0019   18.5  10.8   2   2   0.00011     0.098   13.0   1.1     4    18    97   111    94   116 0.89 4Fe-4S single cluster domain
Fer4_3               PF12798.2     15 sp|P0AFD6|NUOI_ECOLI -            180    0.0039   17.6   4.1   2   2   4.2e-06    0.0039   17.6   4.1     1    14    99   112    99   113 0.92 4Fe-4S binding domain
Fer4_15              PF13459.1     65 sp|P0AFD6|NUOI_ECOLI -            180     0.011   16.2   0.3   3   3   1.2e-05     0.011   16.2   0.3     3    21    94   112    92   136 0.84 4Fe-4S single cluster domain
Oxidored_q3          PF00499.15   144 sp|P0AFE0|NUOJ_ECOLI -            184   6.2e-21   74.6  15.2   1   1   2.3e-24   8.4e-21   74.2  15.2     1   141    13   156    13   158 0.76 NADH-ubiquinone/plastoquinone oxidoreductase chain 6
Frizzled             PF01534.12   328 sp|P0AFE0|NUOJ_ECOLI -            184    0.0055   15.5   2.4   1   1   1.9e-06    0.0071   15.1   2.4   101   211    48   161    31   177 0.79 Frizzled/Smoothened family membrane region
MpPF26               PF07666.6    130 sp|P0AFE0|NUOJ_ECOLI -            184       3.2    7.6  12.6   2   2   3.5e-05      0.13   12.1   3.4    16    79    56   113    51   115 0.84 M penetrans paralogue family 26
Oxidored_q2          PF00420.19    95 sp|P0AFE4|NUOK_ECOLI -            100   2.1e-23   81.7   5.4   1   1     3e-27   2.3e-23   81.6   5.4     3    94     8    99     6   100 0.97 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
ATP1G1_PLM_MAT8      PF02038.11    50 sp|P0AFE4|NUOK_ECOLI -            100    0.0062   15.5   0.9   1   1   2.4e-06     0.018   14.0   0.9    18    33     7    22     5    26 0.84 ATP1G1/PLM/MAT8 family
Oxidored_q1          PF00361.15   270 sp|P33607|NUOL_ECOLI -            613   2.5e-86  289.2  14.9   2   3   3.4e-90   2.5e-86  289.2  14.9     1   269   133   405   133   407 0.98 NADH-Ubiquinone/plastoquinone (complex I), various chains
Oxidored_q1_N        PF00662.15    62 sp|P33607|NUOL_ECOLI -            613   1.3e-22   79.1   0.7   1   3   1.7e-26   1.3e-22   79.1   0.7     2    61    62   121    61   122 0.97 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
Oxidored_q1          PF00361.15   270 sp|P0AFE8|NUOM_ECOLI -            509   1.3e-65  221.3  24.6   2   3     9e-70   1.3e-65  221.3  24.6     3   269   135   413   133   414 0.92 NADH-Ubiquinone/plastoquinone (complex I), various chains
Oxidored_q1          PF00361.15   270 sp|P0AFF0|NUON_ECOLI -            485   4.4e-72  242.5  19.9   3   3   8.9e-76   4.4e-72  242.5  19.9     1   268   122   400   122   402 0.98 NADH-Ubiquinone/plastoquinone (complex I), various chains
NADHdeh_related      PF10125.4    219 sp|P0AFF0|NUON_ECOLI -            485   9.7e-05   21.6   4.3   2   2     2e-08   9.7e-05   21.6   4.3    91   170   125   205   101   259 0.73 NADH dehydrogenase I, subunit N related protein
DUF3154              PF11351.3    123 sp|P0AFF0|NUON_ECOLI -            485       0.2   11.3   5.3   1   1   0.00016      0.77    9.5   5.3    62   109   369   417   366   420 0.81 Protein of unknown function (DUF3154)
Nucleos_tra2_C       PF07662.8    210 sp|P33021|NUPX_ECOLI -            416   4.6e-76  254.9  13.3   3   3   9.2e-80   4.6e-76  254.9  13.3     1   210   201   413   201   413 0.97 Na+ dependent nucleoside transporter C-terminus
Nucleos_tra2_N       PF01773.15    75 sp|P33021|NUPX_ECOLI -            416   1.6e-22   79.5   4.3   1   2   3.3e-26   1.6e-22   79.5   4.3     1    75     8    82     8    82 0.99 Na+ dependent nucleoside transporter N-terminus
Gate                 PF07670.9    109 sp|P33021|NUPX_ECOLI -            416   9.4e-08   31.9  20.7   1   2   1.2e-10     6e-07   29.3   6.4     3   102   100   192    99   197 0.94 Nucleoside recognition
Nucleos_tra2_C       PF07662.8    210 sp|P0AFF2|NUPC_ECOLI -            400   1.6e-69  233.6  16.2   2   2   4.2e-73   1.6e-69  233.6  16.2     1   209   193   399   193   400 0.98 Na+ dependent nucleoside transporter C-terminus
Nucleos_tra2_N       PF01773.15    75 sp|P0AFF2|NUPC_ECOLI -            400   2.1e-24   85.6   4.2   1   3   5.6e-28   2.1e-24   85.6   4.2     1    74     9    82     9    83 0.98 Na+ dependent nucleoside transporter N-terminus
Gate                 PF07670.9    109 sp|P0AFF2|NUPC_ECOLI -            400   6.3e-05   22.8   5.0   2   4   1.7e-08   6.3e-05   22.8   5.0     2   106    92   189    91   192 0.94 Nucleoside recognition
PAP_central          PF04928.12   254 sp|P0AFF2|NUPC_ECOLI -            400      0.09   11.5   0.0   1   1   4.3e-05      0.16   10.7   0.0   122   176   163   217   144   234 0.85 Poly(A) polymerase central domain
NusA_N               PF08529.6    122 sp|P0AFF6|NUSA_ECOLI -            495   1.3e-42  144.5   7.5   1   1   1.8e-45   2.9e-42  143.5   7.5     1   121     4   124     4   125 0.99 NusA N-terminal domain
KH_5                 PF13184.1     69 sp|P0AFF6|NUSA_ECOLI -            495   3.6e-28   97.1   1.4   2   3   5.4e-30     9e-27   92.6   0.1     1    67   230   296   230   298 0.98 NusA-like KH domain
HHH_5                PF14520.1     60 sp|P0AFF6|NUSA_ECOLI -            495   5.1e-24   84.2   6.0   1   2   4.2e-11     7e-08   32.5   0.1     3    59   355   411   353   412 0.93 Helix-hairpin-helix domain
HHH_5                PF14520.1     60 sp|P0AFF6|NUSA_ECOLI -            495   5.1e-24   84.2   6.0   2   2   2.9e-17   4.8e-14   52.2   1.8     3    60   430   487   428   487 0.97 Helix-hairpin-helix domain
S1                   PF00575.18    74 sp|P0AFF6|NUSA_ECOLI -            495   1.1e-11   44.6   0.4   1   1   2.7e-14   4.4e-11   42.7   0.1     2    72   132   196   131   198 0.96 S1 RNA binding domain
KH_2                 PF07650.12    78 sp|P0AFF6|NUSA_ECOLI -            495     0.066   12.7   5.1   2   2     4e-05     0.066   12.7   0.0    11    54   289   332   282   340 0.84 KH domain
KH_4                 PF13083.1     73 sp|P0AFF6|NUSA_ECOLI -            495      0.13   11.9   0.0   1   1     8e-05      0.13   11.9   0.0    15    51   290   325   281   326 0.74 KH domain
NusB                 PF01029.13   134 sp|P0A780|NUSB_ECOLI -            139   1.7e-34  118.7   0.2   1   1   2.6e-38   1.9e-34  118.5   0.2     1   133     7   131     7   132 0.93 NusB family
RinB                 PF06116.7     53 sp|P0A780|NUSB_ECOLI -            139     0.063   12.8   0.1   2   2   2.5e-05      0.19   11.3   0.0     5    46    80   119    77   126 0.84 Transcriptional activator RinB
NusG                 PF02357.14    92 sp|P0AFG0|NUSG_ECOLI -            181   5.8e-25   87.3   0.0   1   1   1.1e-28   8.4e-25   86.8   0.0     1    92     7   106     7   106 0.93 Transcription termination factor nusG
KOW                  PF00467.24    32 sp|P0AFG0|NUSG_ECOLI -            181   2.4e-08   33.3   0.2   2   2   1.2e-11   9.1e-08   31.5   0.1     1    29   130   162   130   165 0.87 KOW motif
GTP1_OBG             PF01018.17   156 sp|P42641|OBG_ECOLI  -            390   1.2e-71  239.4   5.5   1   1   1.1e-74   1.7e-71  238.9   5.5     1   156     3   158     3   158 0.99 GTP1/OBG
MMR_HSR1             PF01926.18   116 sp|P42641|OBG_ECOLI  -            390   2.2e-21   75.9   0.0   1   1   2.1e-24   3.5e-21   75.3   0.0     1   116   161   284   161   284 0.83 50S ribosome-binding GTPase
FeoB_N               PF02421.13   156 sp|P42641|OBG_ECOLI  -            390   5.9e-08   32.1   0.0   1   2   4.4e-10   7.3e-07   28.5   0.0     3    57   162   217   160   251 0.93 Ferrous iron transport protein B
Gtr1_RagA            PF04670.7    232 sp|P42641|OBG_ECOLI  -            390    0.0099   15.0   0.0   1   1   9.2e-06     0.015   14.4   0.0     5   138   165   302   162   313 0.80 Gtr1/RagA G protein conserved region
GTP_EFTU             PF00009.22   188 sp|P42641|OBG_ECOLI  -            390     0.031   13.7   0.0   2   2   0.00059      0.97    8.8   0.0   123   185   275   331   253   334 0.80 Elongation factor Tu GTP binding domain
ArgK                 PF03308.11   267 sp|P42641|OBG_ECOLI  -            390     0.072   11.8   0.1   1   2   0.00054       0.9    8.2   0.0    31    50   161   180   145   186 0.87 ArgK protein
Miro                 PF08477.8    119 sp|P42641|OBG_ECOLI  -            390     0.091   13.2   0.0   1   1   0.00012       0.2   12.1   0.0     2   119   162   286   161   286 0.66 Miro-like protein
DUF2016              PF09436.5     73 sp|P42641|OBG_ECOLI  -            390      0.14   11.7   0.0   1   1   0.00017      0.28   10.7   0.0    18    37   103   122    96   125 0.88 Domain of unknown function (DUF2016)
Transket_pyr         PF02779.19   178 sp|P0AFG3|ODO1_ECOLI -            933     6e-67  224.5   0.0   1   1   1.4e-70     1e-66  223.8   0.0     4   178   592   785   589   785 0.99 Transketolase, pyrimidine binding domain
E1_dh                PF00676.15   300 sp|P0AFG3|ODO1_ECOLI -            933   1.9e-46  158.1   0.0   1   1   5.4e-50     4e-46  157.1   0.0    15   282   219   511   207   516 0.84 Dehydrogenase E1 component
2-oxoacid_dh         PF00198.18   231 sp|P0AFG6|ODO2_ECOLI -            405   8.4e-82  273.8   0.0   1   1     3e-85   1.1e-81  273.5   0.0     3   231   175   403   173   403 0.98 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Biotin_lipoyl        PF00364.17    74 sp|P0AFG6|ODO2_ECOLI -            405   7.5e-18   63.9   0.3   1   1   4.8e-21   1.8e-17   62.7   0.2     2    73     5    76     4    77 0.96 Biotin-requiring enzyme
E3_binding           PF02817.12    39 sp|P0AFG6|ODO2_ECOLI -            405   4.3e-15   55.0   2.3   1   2   1.4e-18     5e-15   54.8   0.2     5    39   114   148   111   148 0.96 e3 binding domain
Ribosomal_60s        PF00428.14    88 sp|P0AFG6|ODO2_ECOLI -            405       1.3    9.5  11.6   2   2   0.00014       0.5   10.7   3.8    29    67   140   176   115   181 0.66 60s Acidic ribosomal protein
2-oxoacid_dh         PF00198.18   231 sp|P06959|ODP2_ECOLI -            630   3.7e-78  261.9   0.0   1   1   4.6e-81   5.2e-78  261.4   0.0     3   230   399   629   397   630 0.98 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Biotin_lipoyl        PF00364.17    74 sp|P06959|ODP2_ECOLI -            630   1.1e-66  220.3  35.1   1   3   1.9e-24   2.1e-21   75.3   6.6     2    73     4    73     3    74 0.97 Biotin-requiring enzyme
Biotin_lipoyl        PF00364.17    74 sp|P06959|ODP2_ECOLI -            630   1.1e-66  220.3  35.1   2   3     4e-26   4.6e-23   80.6   5.5     2    73   107   176   106   177 0.96 Biotin-requiring enzyme
Biotin_lipoyl        PF00364.17    74 sp|P06959|ODP2_ECOLI -            630   1.1e-66  220.3  35.1   3   3   6.5e-25   7.4e-22   76.7   7.0     1    73   207   277   207   278 0.97 Biotin-requiring enzyme
Biotin_lipoyl_2      PF13533.1     50 sp|P06959|ODP2_ECOLI -            630   3.8e-16   58.4  23.0   2   6   7.8e-07   0.00089   18.8   0.2     4    45    45    88    42    95 0.83 Biotin-lipoyl like
Biotin_lipoyl_2      PF13533.1     50 sp|P06959|ODP2_ECOLI -            630   3.8e-16   58.4  23.0   4   6     4e-06    0.0045   16.6   0.1     4    35   148   179   145   195 0.80 Biotin-lipoyl like
Biotin_lipoyl_2      PF13533.1     50 sp|P06959|ODP2_ECOLI -            630   3.8e-16   58.4  23.0   6   6   6.2e-07   0.00071   19.1   0.1     4    39   249   284   246   296 0.80 Biotin-lipoyl like
E3_binding           PF02817.12    39 sp|P06959|ODP2_ECOLI -            630   3.9e-16   58.4   0.1   1   1   3.4e-19   3.9e-16   58.4   0.1     3    39   327   363   325   363 0.97 e3 binding domain
RnfC_N               PF13375.1    101 sp|P06959|ODP2_ECOLI -            630   3.5e-12   45.9  16.0   1   5   3.7e-06    0.0043   16.7   0.5    42    89    18    66    11    78 0.82 RnfC Barrel sandwich hybrid domain
RnfC_N               PF13375.1    101 sp|P06959|ODP2_ECOLI -            630   3.5e-12   45.9  16.0   2   5     4e-07   0.00046   19.8   0.9    41    85   120   165    87   179 0.81 RnfC Barrel sandwich hybrid domain
RnfC_N               PF13375.1    101 sp|P06959|ODP2_ECOLI -            630   3.5e-12   45.9  16.0   4   5     3e-05     0.034   13.8   1.6    42    82   222   263   214   277 0.84 RnfC Barrel sandwich hybrid domain
HlyD                 PF00529.15   305 sp|P06959|ODP2_ECOLI -            630   1.8e-11   43.9  28.5   2   6    0.0001      0.11   11.7   0.6     3    64    45   106    43   109 0.87 HlyD family secretion protein
HlyD                 PF00529.15   305 sp|P06959|ODP2_ECOLI -            630   1.8e-11   43.9  28.5   3   6   0.00064      0.73    9.0   0.2    12    37   120   145   119   150 0.90 HlyD family secretion protein
HlyD                 PF00529.15   305 sp|P06959|ODP2_ECOLI -            630   1.8e-11   43.9  28.5   4   6    0.0002      0.23   10.7   0.1     3    46   148   194   146   207 0.81 HlyD family secretion protein
HlyD                 PF00529.15   305 sp|P06959|ODP2_ECOLI -            630   1.8e-11   43.9  28.5   6   6   1.3e-05     0.014   14.6   0.8     3    88   249   337   247   378 0.64 HlyD family secretion protein
GCV_H                PF01597.14   122 sp|P06959|ODP2_ECOLI -            630   2.2e-10   40.3  19.5   1   3   7.5e-06    0.0085   15.7   1.2    38    81    21    64     7    67 0.88 Glycine cleavage H-protein
GCV_H                PF01597.14   122 sp|P06959|ODP2_ECOLI -            630   2.2e-10   40.3  19.5   2   3   4.7e-07   0.00054   19.6   1.5    38    81   124   167    86   170 0.90 Glycine cleavage H-protein
GCV_H                PF01597.14   122 sp|P06959|ODP2_ECOLI -            630   2.2e-10   40.3  19.5   3   3   1.3e-05     0.015   15.0   2.5    38    80   225   267   203   271 0.82 Glycine cleavage H-protein
NQRA                 PF05896.6    257 sp|P06959|ODP2_ECOLI -            630   3.4e-06   26.4  13.4   1   3   0.00021      0.24   10.5   0.4    42    93    19    73    14   101 0.73 Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
NQRA                 PF05896.6    257 sp|P06959|ODP2_ECOLI -            630   3.4e-06   26.4  13.4   2   3     8e-05     0.091   11.9   0.6    42    86   122   169    98   197 0.78 Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
NQRA                 PF05896.6    257 sp|P06959|ODP2_ECOLI -            630   3.4e-06   26.4  13.4   3   3   0.00021      0.24   10.5   1.0    43    91   224   275   193   296 0.69 Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
DUF3597              PF12200.3    127 sp|P06959|ODP2_ECOLI -            630      0.03   14.7  19.0   1   3   0.00036      0.41   11.0   2.1     9    61    73   130    68   138 0.62 Domain of unknown function (DUF3597)
DNA_binding_1        PF01035.15    85 sp|P0AFH0|OGT_ECOLI  -            171   6.5e-33  112.3   0.0   1   1   1.2e-36   8.9e-33  111.8   0.0     1    82    87   168    87   171 0.98 6-O-methylguanine DNA methyltransferase, DNA binding domain
Methyltransf_1N      PF02870.10    77 sp|P0AFH0|OGT_ECOLI  -            171   1.8e-20   73.3   0.0   1   1   3.2e-24   2.4e-20   72.9   0.0     2    76     4    83     3    84 0.97 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
OmpA_membrane        PF01389.12   183 sp|P0A910|OMPA_ECOLI -            346     1e-75  253.3   2.4   1   1   3.5e-79   1.3e-75  252.9   2.4     1   183    23   195    23   195 0.97 OmpA-like transmembrane domain
OMP_b-brl            PF13505.1    176 sp|P0A910|OMPA_ECOLI -            346   1.7e-24   86.7   7.5   1   1   4.6e-28   1.7e-24   86.7   7.5     2   176     8   191     7   191 0.83 Outer membrane protein beta-barrel domain
OmpA                 PF00691.15    97 sp|P0A910|OMPA_ECOLI -            346   9.6e-23   80.4   0.0   1   1   5.6e-26   2.1e-22   79.3   0.0     1    95   222   317   222   319 0.96 OmpA family
DUF2490              PF10677.4    194 sp|P0A910|OMPA_ECOLI -            346     0.044   13.0   0.1   1   2   0.00017      0.64    9.2   0.1    18    69    36    87    27   105 0.83 Protein of unknown function (DUF2490)
Porin_1              PF00267.16   337 sp|P06996|OMPC_ECOLI -            367  1.4e-138  461.7  30.2   1   1  2.2e-142  1.6e-138  461.5  30.2     1   337    27   367    27   367 0.98 Gram-negative porin
Porin_4              PF13609.1    311 sp|P06996|OMPC_ECOLI -            367   7.1e-18   65.1  39.7   1   1   1.3e-21   9.6e-18   64.7  39.7     6   304    13   338     7   345 0.75 Gram-negative porin
Porin_1              PF00267.16   337 sp|P02931|OMPF_ECOLI -            362  5.8e-128  426.8  27.9   1   1  8.8e-132  6.5e-128  426.7  27.9     1   337    28   362    28   362 0.97 Gram-negative porin
Porin_4              PF13609.1    311 sp|P02931|OMPF_ECOLI -            362   2.4e-18   66.7  44.5   1   1   6.1e-22   4.5e-18   65.8  44.5     6   303    13   335     7   362 0.73 Gram-negative porin
KdgM                 PF06178.8    218 sp|P76773|OMPL_ECOLI -            230   1.6e-87  292.6  10.8   1   1   4.9e-91   1.8e-87  292.4  10.8     2   218    15   230    14   230 0.99 Oligogalacturonate-specific porin protein (KdgM)
DUF1597              PF07642.6    344 sp|P76773|OMPL_ECOLI -            230   2.8e-07   29.9   8.9   1   1   2.5e-10   9.1e-07   28.2   8.9   152   326    50   219    13   229 0.78 Outer membrane protein family (DUF1597)
OMP_b-brl            PF13505.1    176 sp|P76773|OMPL_ECOLI -            230   3.5e-06   27.0   7.6   1   1   2.5e-09   9.4e-06   25.6   7.6     2   176     7   230     6   230 0.75 Outer membrane protein beta-barrel domain
DUF3374              PF11854.3    637 sp|P76773|OMPL_ECOLI -            230     0.003   15.8   3.4   1   2   3.2e-06     0.012   13.9   1.5   435   491   106   164   103   190 0.79 Protein of unknown function (DUF3374)
Porin_1              PF00267.16   337 sp|P77747|OMPN_ECOLI -            377  4.7e-148  492.9  27.0   1   1  1.1e-151  5.4e-148  492.7  27.0     1   337    27   377    27   377 0.98 Gram-negative porin
Porin_4              PF13609.1    311 sp|P77747|OMPN_ECOLI -            377   1.1e-24   87.5  37.3   1   1     3e-28   1.5e-24   87.1  37.3     5   304    13   347     6   354 0.79 Gram-negative porin
Ecm33                PF12454.3     40 sp|P77747|OMPN_ECOLI -            377      0.16   11.9   0.6   1   1   7.5e-05      0.37   10.6   0.6     7    20     9    22     4    30 0.86 GPI-anchored cell wall organization protein
Omptin               PF01278.15   295 sp|P09169|OMPT_ECOLI -            317  3.2e-150  499.1  12.3   1   1  2.5e-154  3.6e-150  498.9  12.3     2   295    22   317    20   317 0.99 Omptin family
OmpW                 PF03922.9    192 sp|P0A915|OMPW_ECOLI -            212   2.4e-73  245.8   0.1   1   1   9.4e-77   2.8e-73  245.6   0.1     1   192    23   212    23   212 0.99 OmpW family
OMP_b-brl            PF13505.1    176 sp|P0A915|OMPW_ECOLI -            212   4.1e-15   56.1   6.4   1   1   1.8e-18   5.2e-15   55.8   6.4     1   176     7   212     7   212 0.76 Outer membrane protein beta-barrel domain
OprF                 PF05736.6    184 sp|P0A915|OMPW_ECOLI -            212     6e-05   22.6   0.2   1   1     6e-08   0.00018   21.1   0.1    47   120    54   129     5   145 0.84 OprF membrane domain
Opacity              PF02462.10   132 sp|P0A915|OMPW_ECOLI -            212    0.0063   16.4   0.3   2   2   1.3e-05     0.039   13.8   0.1    43   115   109   184   103   199 0.73 Opacity family porin protein
OMP_b-brl_2          PF13568.1    173 sp|P0A915|OMPW_ECOLI -            212     0.019   14.7   1.9   1   1     1e-05      0.03   14.1   0.8    91   163   103   174    60   209 0.85 Outer membrane protein beta-barrel domain
OMP_b-brl            PF13505.1    176 sp|P0A917|OMPX_ECOLI -            171   6.6e-27   94.5  13.5   1   1   2.6e-30   7.7e-27   94.3  13.5     2   176     9   171     5   171 0.87 Outer membrane protein beta-barrel domain
Ail_Lom              PF06316.6    199 sp|P0A917|OMPX_ECOLI -            171   1.6e-23   83.2   4.7   1   2   5.4e-18   1.6e-14   53.8   1.3     1   126     1   115     1   127 0.77 Enterobacterial Ail/Lom protein
Ail_Lom              PF06316.6    199 sp|P0A917|OMPX_ECOLI -            171   1.6e-23   83.2   4.7   2   2   5.5e-11   1.6e-07   31.0   0.1   154   199   126   171   120   171 0.93 Enterobacterial Ail/Lom protein
OMP_b-brl_3          PF14905.1    506 sp|P0A917|OMPX_ECOLI -            171   0.00012   20.8   4.0   1   1   4.5e-08   0.00013   20.7   4.0   320   427    46   153    32   171 0.71 Outer membrane protein beta-barrel family
Phenol_MetA_deg      PF13557.1    248 sp|P0A917|OMPX_ECOLI -            171    0.0021   17.9  10.0   1   1   7.8e-07    0.0023   17.7  10.0   104   231    26   152    15   171 0.78 Putative MetA-pathway of phenol degradation
MOSP_C               PF02722.10   201 sp|P0A917|OMPX_ECOLI -            171    0.0094   15.5   0.0   1   1   6.7e-06      0.02   14.4   0.0   131   172   114   155    85   160 0.74 Major Outer Sheath Protein C-terminal region
Peptidase_M3         PF01432.15   458 sp|P27298|OPDA_ECOLI -            680  3.5e-177  590.0   0.0   1   1  2.9e-181  4.3e-177  589.7   0.0     1   457   222   677   222   678 0.99 Peptidase family M3
Sulfatase            PF00884.18   308 sp|P39401|OPGB_ECOLI -            763   1.5e-22   80.1   0.2   1   1     6e-26   2.2e-22   79.6   0.2     2   307   163   446   162   447 0.85 Sulfatase
PilN                 PF05137.8     78 sp|P39401|OPGB_ECOLI -            763     0.037   13.8   0.0   1   1   4.2e-05      0.16   11.8   0.0    29    57   362   390   350   406 0.85 Fimbrial assembly protein (PilN)
DUF2157              PF09925.4    145 sp|P39401|OPGB_ECOLI -            763       5.1    6.6   8.7   1   2   0.00015      0.56    9.8   2.8    67   123     5    60     3    72 0.86 Predicted membrane protein (DUF2157)
Acyl_transf_3        PF01757.17   340 sp|P75920|OPGC_ECOLI -            385   1.9e-41  142.0  46.4   1   1   4.3e-45   2.1e-41  141.8  46.4     2   339    10   356     9   357 0.95 Acyltransferase family
Phage_Coat_Gp8       PF05371.7     52 sp|P75920|OPGC_ECOLI -            385     0.004   16.6   0.2   1   1   2.9e-06     0.014   14.9   0.2    17    47   129   159   125   162 0.91 Phage major coat protein, Gp8
DUF3311              PF11755.3     66 sp|P75920|OPGC_ECOLI -            385     0.074   12.5   0.1   2   3   1.5e-05     0.074   12.5   0.1    16    53   124   165   120   173 0.73 Protein of unknown function (DUF3311)
MdoG                 PF04349.7    484 sp|P40120|OPGD_ECOLI -            551  6.2e-151  502.9   0.1   1   1  1.5e-154  7.4e-151  502.6   0.1     1   482    45   534    45   536 0.92 Periplasmic glucan biosynthesis protein, MdoG
EpoR_lig-bind        PF09067.5    104 sp|P40120|OPGD_ECOLI -            551    0.0065   16.4   0.1   2   2   1.2e-05      0.06   13.3   0.0    19    60   385   428   380   435 0.80 Erythropoietin receptor, ligand binding
TAT_signal           PF10518.4     26 sp|P40120|OPGD_ECOLI -            551    0.0068   16.3   2.1   1   2   4.7e-06     0.023   14.6   0.6     2    25     1    24     1    25 0.91 TAT (twin-arginine translocation) pathway signal sequence
Sulfatase            PF00884.18   308 sp|P75785|OPGE_ECOLI -            527   2.4e-43  148.5   1.2   1   1   8.4e-47   3.1e-43  148.1   1.2     1   308   217   483   217   483 0.93 Sulfatase
p53-inducible11      PF14936.1    179 sp|P75785|OPGE_ECOLI -            527     0.015   15.2   0.4   1   1   7.1e-06     0.026   14.4   0.4    96   133    41    78    38   117 0.92 Tumour protein p53-inducible protein 11
DUF1705              PF08019.7    156 sp|P75785|OPGE_ECOLI -            527     0.097   12.1   2.4   1   1   4.4e-05      0.16   11.4   2.4     4   124    44   163    41   166 0.74 Domain of unknown function (DUF1705)
MdoG                 PF04349.7    484 sp|P33136|OPGG_ECOLI -            511  1.1e-262  871.4   1.2   1   1  1.8e-266  1.3e-262  871.2   1.2     1   483    23   508    23   509 1.00 Periplasmic glucan biosynthesis protein, MdoG
Med7                 PF05983.6    162 sp|P33136|OPGG_ECOLI -            511      0.14   11.9   0.0   1   2   5.1e-05      0.38   10.5   0.0    33    79   109   150    78   161 0.86 MED7 protein
Glycos_transf_2      PF00535.21   169 sp|P62517|OPGH_ECOLI -            847   1.4e-19   70.3   0.0   1   1   5.8e-23   2.2e-19   69.7   0.0     2   168   246   429   245   430 0.98 Glycosyl transferase family 2
Glyco_trans_2_3      PF13632.1    193 sp|P62517|OPGH_ECOLI -            847   3.5e-16   59.4   3.3   2   2   9.5e-20   3.5e-16   59.4   3.3     2   186   342   533   341   591 0.74 Glycosyl transferase family group 2
Glyco_tranf_2_3      PF13641.1    228 sp|P62517|OPGH_ECOLI -            847   8.6e-15   55.1   0.1   1   1   5.6e-18   2.1e-14   53.9   0.0     2   228   243   493   242   493 0.84 Glycosyltransferase like family 2
Glyco_transf_21      PF13506.1    175 sp|P62517|OPGH_ECOLI -            847     2e-08   33.7   0.0   1   1   1.9e-11   7.2e-08   31.9   0.0     6   149   312   469   308   492 0.76 Glycosyl transferase family 21
SBP_bac_5            PF00496.17   374 sp|P23843|OPPA_ECOLI -            543   3.8e-87  292.5   9.3   1   1   7.6e-91   5.6e-87  291.9   9.3     3   373    83   463    81   464 0.92 Bacterial extracellular solute-binding proteins, family 5 Middle
DUF708               PF05341.6    105 sp|P23843|OPPA_ECOLI -            543     0.019   14.7   1.0   2   2   1.2e-05     0.086   12.6   0.3    33    87   447   501   444   513 0.86 Protein of unknown function (DUF708)
BPD_transp_1         PF00528.17   185 sp|P0AFH2|OPPB_ECOLI -            306   1.2e-38  132.4  18.3   2   2   8.3e-43   1.2e-38  132.4  18.3     1   185   112   306   112   306 0.99 Binding-protein-dependent transport system inner membrane component
BPD_transp_1         PF00528.17   185 sp|P0AFH6|OPPC_ECOLI -            302   6.9e-26   90.9   9.9   3   3   9.3e-30   6.9e-26   90.9   9.9     1   182   119   300   115   302 0.98 Binding-protein-dependent transport system inner membrane component
OppC_N               PF12911.2     56 sp|P0AFH6|OPPC_ECOLI -            302   1.8e-19   68.8   0.4   1   1   2.5e-23   1.8e-19   68.8   0.4     1    55    22    76    22    77 0.94 N-terminal TM domain of oligopeptide transport permease C
ABC_tran             PF00005.22   137 sp|P77737|OPPF_ECOLI -            334   3.7e-31  108.2   0.0   1   1   7.1e-34   5.3e-31  107.7   0.0     2   136    41   192    40   193 0.91 ABC transporter
oligo_HPY            PF08352.7     64 sp|P77737|OPPF_ECOLI -            334   1.4e-19   70.1   0.2   1   1   3.5e-22   2.6e-19   69.3   0.2     1    64   244   311   244   311 0.99 Oligopeptide/dipeptide transporter, C-terminal region
AAA_21               PF13304.1    303 sp|P77737|OPPF_ECOLI -            334   1.6e-06   28.3   0.0   2   2   3.2e-06    0.0024   17.9   0.0   220   294   148   220    85   229 0.78 AAA domain
AAA_10               PF12846.2    304 sp|P77737|OPPF_ECOLI -            334   0.00028   20.4   0.0   1   2   0.00014      0.11   11.9   0.0     6    33    55    82    51   118 0.89 AAA-like domain
AAA_25               PF13481.1    194 sp|P77737|OPPF_ECOLI -            334     0.001   18.4   1.0   1   2   1.1e-05    0.0084   15.5   0.1    26    69    40    93    24   101 0.73 AAA domain
AAA_22               PF13401.1    131 sp|P77737|OPPF_ECOLI -            334    0.0031   17.6   0.5   1   1   4.9e-05     0.036   14.2   0.5     9   122    55   221    49   230 0.62 AAA domain
SMC_N                PF02463.14   220 sp|P77737|OPPF_ECOLI -            334    0.0099   15.1   0.0   1   1   3.4e-05     0.025   13.7   0.0    27   205    53   231    38   244 0.75 RecF/RecN/SMC N terminal domain
AAA_16               PF13191.1    185 sp|P77737|OPPF_ECOLI -            334     0.015   15.3   0.4   1   1   3.9e-05     0.029   14.3   0.4    23    54    49    80    37   221 0.87 AAA ATPase domain
AAA_29               PF13555.1     62 sp|P77737|OPPF_ECOLI -            334     0.015   14.7   0.1   1   1   3.5e-05     0.026   14.0   0.1    13    46    41    73    38    82 0.79 P-loop containing region of AAA domain
NACHT                PF05729.7    166 sp|P77737|OPPF_ECOLI -            334     0.022   14.3   0.1   1   1     6e-05     0.045   13.4   0.1     2    25    52    75    51    81 0.84 NACHT domain
PRK                  PF00485.13   194 sp|P77737|OPPF_ECOLI -            334     0.026   14.0   0.0   1   1   6.9e-05     0.051   13.1   0.0     2    23    53    74    52    96 0.85 Phosphoribulokinase / Uridine kinase family
MobB                 PF03205.9    140 sp|P77737|OPPF_ECOLI -            334      0.05   13.3   0.1   1   1   0.00012     0.087   12.5   0.1     3    32    53    82    51    90 0.89 Molybdopterin guanine dinucleotide synthesis protein B
AAA                  PF00004.24   132 sp|P77737|OPPF_ECOLI -            334     0.054   13.6   0.0   1   1   0.00015      0.11   12.6   0.0     3    52    55   109    53   151 0.69 ATPase family associated with various cellular activities (AAA)
DUF258               PF03193.11   161 sp|P77737|OPPF_ECOLI -            334     0.075   12.2   0.0   1   1   0.00019      0.14   11.3   0.0    34    61    49    76    27    92 0.79 Protein of unknown function, DUF258
Sigma54_activat      PF00158.21   168 sp|P77737|OPPF_ECOLI -            334     0.094   12.1   0.2   1   1   0.00057      0.42   10.0   0.0    27    48    55    76    35    84 0.81 Sigma-54 interaction domain
AAA_17               PF13207.1    121 sp|P77737|OPPF_ECOLI -            334      0.11   13.3   0.0   1   1   0.00027       0.2   12.4   0.0     3    19    54    70    52   132 0.83 AAA domain
RNA_helicase         PF00910.17   107 sp|P77737|OPPF_ECOLI -            334      0.11   12.6   0.0   1   1    0.0003      0.22   11.7   0.0     3    20    55    72    53   114 0.84 RNA helicase
DUF87                PF01935.12   229 sp|P77737|OPPF_ECOLI -            334      0.13   12.0   0.2   1   1   0.00062      0.46   10.2   0.2    26    45    53    72    43    81 0.87 Domain of unknown function DUF87
MMR_HSR1             PF01926.18   116 sp|P77737|OPPF_ECOLI -            334      0.15   11.9   0.0   1   1   0.00041       0.3   11.0   0.0     2    21    53    72    52    88 0.82 50S ribosome-binding GTPase
ATP-synt_ab          PF00006.20   215 sp|P77737|OPPF_ECOLI -            334      0.16   11.4   0.0   1   1   0.00029      0.21   11.0   0.0    10    39    45    74    36   160 0.86 ATP synthase alpha/beta family, nucleotide-binding domain
ABC_tran             PF00005.22   137 sp|P76027|OPPD_ECOLI -            337   3.9e-28   98.4   0.0   1   1   3.8e-31   5.2e-28   98.0   0.0     2   136    40   196    39   197 0.87 ABC transporter
oligo_HPY            PF08352.7     64 sp|P76027|OPPD_ECOLI -            337   2.2e-21   75.9   0.1   1   1     3e-24   4.1e-21   75.0   0.1     1    64   248   312   248   312 0.99 Oligopeptide/dipeptide transporter, C-terminal region
AAA_21               PF13304.1    303 sp|P76027|OPPD_ECOLI -            337   9.9e-12   45.4   0.2   2   2   7.3e-14   9.9e-11   42.1   0.0   227   302   159   232    85   233 0.83 AAA domain
SMC_N                PF02463.14   220 sp|P76027|OPPD_ECOLI -            337   7.9e-05   21.9   0.1   1   1   1.1e-07   0.00014   21.1   0.1    28   205    53   233    42   249 0.67 RecF/RecN/SMC N terminal domain
AAA_15               PF13175.1    415 sp|P76027|OPPD_ECOLI -            337   0.00032   19.8   0.1   2   2   4.3e-06    0.0058   15.7   0.1   372   411   189   228   183   232 0.93 AAA ATPase domain
AAA_10               PF12846.2    304 sp|P76027|OPPD_ECOLI -            337    0.0014   18.1   1.3   2   2   0.00067      0.91    8.8   0.0   215   263   181   229   150   235 0.82 AAA-like domain
AAA_25               PF13481.1    194 sp|P76027|OPPD_ECOLI -            337    0.0021   17.4   0.3   1   2     9e-05      0.12   11.7   0.0    30    65    46    81    27   119 0.85 AAA domain
AAA_29               PF13555.1     62 sp|P76027|OPPD_ECOLI -            337      0.02   14.4   1.3   1   1   2.4e-05     0.032   13.7   0.3    20    52    47    78    37    88 0.77 P-loop containing region of AAA domain
ATP-synt_ab          PF00006.20   215 sp|P76027|OPPD_ECOLI -            337     0.025   14.0   0.2   1   1   4.1e-05     0.055   12.9   0.2     5    89    39   163    36   167 0.91 ATP synthase alpha/beta family, nucleotide-binding domain
RNase_T              PF00929.19   164 sp|P0A784|ORN_ECOLI  -            181   4.1e-34  118.2   0.0   1   1   3.1e-38   4.7e-34  118.0   0.0     1   163     9   170     9   171 0.97 Exonuclease
DUF2566              PF10753.4     55 sp|P64453|ORTT_ECOLI -             57   1.3e-29  101.8   5.3   1   1   2.8e-33   1.4e-29  101.7   5.3     1    55     3    57     3    57 0.99 Protein of unknown function (DUF2566)
HlyIII               PF03006.15   222 sp|P64453|ORTT_ECOLI -             57     0.017   14.5   3.0   1   1   3.1e-06     0.015   14.6   3.0   107   146     4    43     1    57 0.79 Haemolysin-III related
2TM                  PF13239.1     83 sp|P64453|ORTT_ECOLI -             57      0.13   12.3   2.5   1   1   2.7e-05      0.13   12.3   2.5    15    45     3    48     1    57 0.61 2TM domain
OsmC                 PF02566.14   100 sp|P0C0L2|OSMC_ECOLI -            143   1.6e-19   69.9   0.1   1   1   1.4e-23   2.1e-19   69.5   0.1     2    99    42   139    41   140 0.89 OsmC-like protein
OpuAC                PF04069.7    257 sp|P33362|OSMF_ECOLI -            305   3.4e-60  203.5   3.6   1   1   2.6e-64   3.8e-60  203.3   3.6     2   257    26   300    25   300 0.96 Substrate binding domain of ABC-type glycine betaine transport system
OTCace               PF00185.19   158 sp|P04391|OTC1_ECOLI -            334   6.9e-51  172.2   0.2   1   1   2.1e-54   1.6e-50  171.0   0.2     2   157   156   330   155   331 0.97 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
OTCace_N             PF02729.16   142 sp|P04391|OTC1_ECOLI -            334   1.6e-47  160.7   0.0   1   1   3.3e-51   2.5e-47  160.1   0.0     1   142     7   148     7   148 0.99 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace               PF00185.19   158 sp|P06960|OTC2_ECOLI -            334   5.9e-51  172.4   0.3   1   1   1.4e-54   1.1e-50  171.6   0.3     2   157   156   330   155   331 0.96 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
OTCace_N             PF02729.16   142 sp|P06960|OTC2_ECOLI -            334     1e-47  161.3   0.0   1   1   2.5e-51   1.9e-47  160.5   0.0     1   142     7   148     7   148 0.99 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
Glyco_transf_20      PF00982.16   474 sp|P31677|OTSA_ECOLI -            474  6.7e-152  506.2   0.0   1   1    1e-155  7.6e-152  506.0   0.0    27   474    17   453     2   453 0.96 Glycosyltransferase family 20
Trehalose_PPase      PF02358.11   235 sp|P31678|OTSB_ECOLI -            266   9.8e-55  185.0   0.0   1   1   2.4e-58   1.2e-54  184.7   0.0     1   231    18   230    18   234 0.96 Trehalose-phosphatase
Hydrolase_3          PF08282.7    254 sp|P31678|OTSB_ECOLI -            266   7.1e-06   25.7   0.0   1   2     1e-05      0.05   13.1   0.0     2    66    18    86    17   107 0.83 haloacid dehalogenase-like hydrolase
Hydrolase_3          PF08282.7    254 sp|P31678|OTSB_ECOLI -            266   7.1e-06   25.7   0.0   2   2   5.6e-05      0.28   10.7   0.0   152   217   142   205   120   226 0.82 haloacid dehalogenase-like hydrolase
TPP_enzyme_N         PF02776.13   172 sp|P0AFI0|OXC_ECOLI  -            564   2.3e-47  160.6   1.1   1   2   3.4e-50   1.7e-46  157.8   0.3     3   171    10   178     8   179 0.96 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_M         PF00205.17   137 sp|P0AFI0|OXC_ECOLI  -            564   4.5e-33  113.9   0.3   1   2   2.5e-36   1.2e-32  112.4   0.1     2   135   202   327   201   329 0.93 Thiamine pyrophosphate enzyme, central domain
TPP_enzyme_C         PF02775.16   153 sp|P0AFI0|OXC_ECOLI  -            564   2.8e-25   88.6   0.9   2   2   3.1e-28   1.5e-24   86.2   0.0     9   153   402   540   395   540 0.89 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
P5CR_dimer           PF14748.1    107 sp|P0A9L8|P5CR_ECOLI -            269     2e-40  137.1   1.0   1   1   2.5e-43   3.7e-40  136.2   1.0     2   107   161   266   160   266 0.97 Pyrroline-5-carboxylate reductase dimerisation
F420_oxidored        PF03807.12    96 sp|P0A9L8|P5CR_ECOLI -            269   6.2e-24   84.2   0.6   1   1   9.1e-27   1.4e-23   83.1   0.6     1    96     4    99     4    99 0.98 NADP oxidoreductase coenzyme F420-dependent
NAD_binding_2        PF03446.10   163 sp|P0A9L8|P5CR_ECOLI -            269     7e-10   38.9   0.1   1   1   1.2e-12   1.7e-09   37.7   0.1     2    93     3    96     2   117 0.88 NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_Gly3P_dh_N       PF01210.18   157 sp|P0A9L8|P5CR_ECOLI -            269   0.00053   19.7   3.0   1   1   4.2e-06    0.0063   16.2   3.0     1   111     4   105     4   131 0.77 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
GFO_IDH_MocA         PF01408.17   120 sp|P0A9L8|P5CR_ECOLI -            269    0.0011   19.5   0.1   1   1   1.8e-06    0.0026   18.2   0.0     2    72     4    73     3    92 0.88 Oxidoreductase family, NAD-binding Rossmann fold
2-Hacid_dh_C         PF02826.14   178 sp|P0A9L8|P5CR_ECOLI -            269     0.009   15.1   0.1   1   2   1.6e-05     0.023   13.8   0.1    36    99     2    71     1   109 0.81 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
PDH                  PF02153.12   258 sp|P0A9L8|P5CR_ECOLI -            269     0.016   14.1   0.4   1   1   2.4e-05     0.035   12.9   0.3    20    79    40    97    29   120 0.78 Prephenate dehydrogenase
FAD_binding_4        PF01565.18   139 sp|P0A9L8|P5CR_ECOLI -            269     0.017   14.6   4.4   1   2   0.00016      0.24   10.8   0.0    43    85    72   112    57   131 0.80 FAD binding domain
Shikimate_DH         PF01488.15   135 sp|P0A9L8|P5CR_ECOLI -            269     0.027   14.5   0.2   1   1   5.4e-05     0.079   13.0   0.1    12    86     2    74     1   111 0.79 Shikimate / quinate 5-dehydrogenase
ApbA                 PF02558.11   151 sp|P0A9L8|P5CR_ECOLI -            269     0.047   13.1   3.5   1   1   0.00017      0.25   10.7   3.5     3   123     7   119     5   128 0.69 Ketopantoate reductase PanE/ApbA
PLA1                 PF02253.10   260 sp|P0A921|PA1_ECOLI  -            289   1.7e-93  312.8   5.0   1   1   1.4e-97     2e-93  312.5   5.0     8   260    39   286    33   286 0.98 Phospholipase A1
Fer2                 PF00111.22    78 sp|P76081|PAAE_ECOLI -            356     1e-17   63.6   0.6   1   1   5.2e-21   1.9e-17   62.7   0.6     2    77   267   341   266   342 0.91 2Fe-2S iron-sulfur cluster binding domain
FAD_binding_6        PF00970.19    99 sp|P76081|PAAE_ECOLI -            356   2.2e-16   59.7   0.0   1   1     1e-19   3.7e-16   59.0   0.0     2    99     7   105     6   105 0.91 Oxidoreductase FAD-binding domain
NAD_binding_1        PF00175.16   109 sp|P76081|PAAE_ECOLI -            356   6.1e-16   58.9   0.0   1   1   2.7e-19     1e-15   58.2   0.0     2   108   118   226   117   227 0.92 Oxidoreductase NAD-binding domain
NAD_binding_6        PF08030.7    156 sp|P76081|PAAE_ECOLI -            356   0.00026   20.9   0.0   1   1   3.2e-07    0.0012   18.7   0.0     6    83   117   187   114   266 0.81 Ferric reductase NAD binding domain
ECH                  PF00378.15   245 sp|P76082|PAAF_ECOLI -            255   2.4e-73  246.2   2.7   1   1   5.9e-77   2.9e-73  246.0   2.7     4   245     8   247     6   247 0.99 Enoyl-CoA hydratase/isomerase family
ECH_C                PF13766.1    118 sp|P76082|PAAF_ECOLI -            255   1.7e-05   24.9   0.6   2   2   7.1e-09   3.5e-05   23.9   0.2    31    91   185   245   160   253 0.91 2-enoyl-CoA Hydratase C-terminal region
ECH                  PF00378.15   245 sp|P77467|PAAG_ECOLI -            262   3.5e-61  206.4   0.0   1   1   5.3e-65   3.9e-61  206.2   0.0     3   244     8   253     6   254 0.96 Enoyl-CoA hydratase/isomerase family
ECH_C                PF13766.1    118 sp|P77467|PAAG_ECOLI -            262   0.00066   19.8   0.2   1   1   1.9e-07    0.0014   18.7   0.0    29    93   190   254   170   261 0.86 2-enoyl-CoA Hydratase C-terminal region
3HCDH_N              PF02737.13   180 sp|P76083|PAAH_ECOLI -            475     7e-65  218.0   1.2   1   1     7e-68     7e-65  218.0   1.2     1   178     7   184     7   186 0.99 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
3HCDH                PF00725.17    97 sp|P76083|PAAH_ECOLI -            475   1.3e-46  156.9   0.0   1   2     2e-31   1.9e-28   98.6   0.0     1    97   188   285   188   285 0.98 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
3HCDH                PF00725.17    97 sp|P76083|PAAH_ECOLI -            475   1.3e-46  156.9   0.0   2   2   4.6e-18   4.6e-15   55.8   0.0     1    80   387   466   387   472 0.96 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
NAD_binding_2        PF03446.10   163 sp|P76083|PAAH_ECOLI -            475   2.5e-06   27.4   1.7   1   1   3.4e-09   3.4e-06   27.0   0.2     2    91     6   117     5   149 0.69 NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_Gly3P_dh_N       PF01210.18   157 sp|P76083|PAAH_ECOLI -            475   4.6e-05   23.1   3.0   1   1   1.3e-07   0.00013   21.7   3.0     2   148     8   173     7   180 0.70 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
2-Hacid_dh_C         PF02826.14   178 sp|P76083|PAAH_ECOLI -            475    0.0034   16.5   0.1   1   1   6.3e-06    0.0062   15.7   0.1    36    71     5    40     2   106 0.90 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
UDPG_MGDP_dh_N       PF03721.9    185 sp|P76083|PAAH_ECOLI -            475    0.0039   16.5   0.1   1   1   8.4e-06    0.0083   15.5   0.1     2    38     7    43     6    90 0.86 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
DAO                  PF01266.19   358 sp|P76083|PAAH_ECOLI -            475    0.0041   16.0   1.0   1   1   7.2e-06    0.0071   15.2   0.2     2    29     8    35     7   113 0.88 FAD dependent oxidoreductase
AlaDh_PNT_C          PF01262.16   168 sp|P76083|PAAH_ECOLI -            475    0.0047   16.5   1.1   1   1   1.3e-05     0.012   15.1   0.1    21    61     6    46     2    92 0.85 Alanine dehydrogenase/PNT, C-terminal domain
F420_oxidored        PF03807.12    96 sp|P76083|PAAH_ECOLI -            475    0.0087   16.4   3.0   1   1   1.4e-05     0.014   15.8   1.1     1    39     7    41     7    94 0.78 NADP oxidoreductase coenzyme F420-dependent
Pyr_redox            PF00070.22    80 sp|P76083|PAAH_ECOLI -            475     0.016   15.6   0.3   1   1   4.3e-05     0.042   14.2   0.3     2    39     8    46     7    59 0.91 Pyridine nucleotide-disulphide oxidoreductase
TrkA_N               PF02254.13   116 sp|P76083|PAAH_ECOLI -            475     0.018   14.9   0.8   1   2   0.00044      0.44   10.5   0.1     1    38     8    45     8    70 0.85 TrkA-N domain
Saccharop_dh         PF03435.13   386 sp|P76083|PAAH_ECOLI -            475     0.022   13.7   1.6   1   1   2.2e-05     0.022   13.7   0.2     1    69     8    78     8   136 0.90 Saccharopine dehydrogenase
DFP                  PF04127.10   185 sp|P76083|PAAH_ECOLI -            475     0.035   13.7   0.2   1   1   9.9e-05     0.097   12.2   0.2    26    96    11    88     4   123 0.64 DNA / pantothenate metabolism flavoprotein
NAD_binding_8        PF13450.1     68 sp|P76083|PAAH_ECOLI -            475     0.053   13.5   2.6   1   1   0.00019      0.18   11.8   0.6     1    28    10    37    10    51 0.93 NAD(P)-binding Rossmann-like domain
Pyr_redox_2          PF07992.9    201 sp|P76083|PAAH_ECOLI -            475     0.062   13.1   0.1   1   1   0.00013      0.13   12.0   0.1     2    29     8    39     7   127 0.75 Pyridine nucleotide-disulphide oxidoreductase
4HBT                 PF03061.17    79 sp|P76084|PAAI_ECOLI -            140   6.3e-22   77.4   0.2   1   1   3.6e-25   1.1e-21   76.7   0.0     3    79    50   123    48   123 0.96 Thioesterase superfamily
DUF4442              PF14539.1    132 sp|P76084|PAAI_ECOLI -            140   0.00016   21.6   0.1   1   1   7.3e-08   0.00022   21.2   0.1    18   124    21   123     8   129 0.80 Domain of unknown function (DUF4442)
4HBT_3               PF13622.1    255 sp|P76084|PAAI_ECOLI -            140    0.0054   16.5   0.1   1   1   2.3e-06    0.0069   16.1   0.1   174   248    55   124    28   129 0.60 Thioesterase-like superfamily
PS-DH                PF14765.1    296 sp|P76084|PAAI_ECOLI -            140     0.017   14.2   0.0   1   1   6.4e-06     0.019   14.1   0.0   224   283    69   127    25   134 0.83 Polyketide synthase dehydratase
MaoC_dehydrat_N      PF13452.1    132 sp|P76084|PAAI_ECOLI -            140     0.086   12.6   0.2   1   1   0.00019      0.56    9.9   0.2    71   120    71   120     3   124 0.58 N-terminal half of MaoC dehydratase
Thiolase_N           PF00108.18   264 sp|P0C7L2|PAAJ_ECOLI -            401   3.5e-81  272.0   0.1   1   1   9.2e-85   4.6e-81  271.6   0.1     1   264     1   269     1   269 0.95 Thiolase, N-terminal domain
Thiolase_C           PF02803.13   123 sp|P0C7L2|PAAJ_ECOLI -            401   2.5e-46  156.0   0.2   1   1     1e-49     5e-46  155.1   0.2     2   123   277   400   276   400 0.96 Thiolase, C-terminal domain
ketoacyl-synt        PF00109.21   254 sp|P0C7L2|PAAJ_ECOLI -            401   0.00066   19.2   0.5   1   1   3.6e-07    0.0018   17.8   0.5   176   224    90   137    82   144 0.79 Beta-ketoacyl synthase, N-terminal domain
AMP-binding_C_2      PF14535.1     96 sp|P76085|PAAK_ECOLI -            437   5.4e-27   93.6   0.0   1   1   3.7e-30   1.4e-26   92.3   0.0     1    96   336   432   336   432 0.97 AMP-binding enzyme C-terminal domain
AMP-binding          PF00501.23   417 sp|P76085|PAAK_ECOLI -            437   2.4e-21   75.6   0.2   1   1   1.3e-24   4.8e-21   74.6   0.2   152   417    72   335    10   335 0.71 AMP-binding enzyme
LuxE                 PF04443.7    366 sp|P76085|PAAK_ECOLI -            437     0.011   14.4   0.0   1   1   4.9e-06     0.018   13.7   0.0    25   127    13   122     3   135 0.85 Acyl-protein synthetase, LuxE
Hexapep              PF00132.19    36 sp|P77181|PAAY_ECOLI -            196   6.6e-17   60.1  16.0   1   4   1.9e-09   1.4e-05   24.3   0.1     3    36    12    45    10    45 0.90 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P77181|PAAY_ECOLI -            196   6.6e-17   60.1  16.0   3   4   3.7e-08   0.00027   20.2   3.2     1    34    71   103    71   103 0.97 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P77181|PAAY_ECOLI -            196   6.6e-17   60.1  16.0   4   4   2.6e-12   1.9e-08   33.4   2.6     1    35    88   122    88   123 0.95 Bacterial transferase hexapeptide (six repeats)
Hexapep_2            PF14602.1     34 sp|P77181|PAAY_ECOLI -            196   2.5e-08   33.3  13.1   1   4   5.4e-06      0.04   13.4   0.0     7    32    16    43    15    44 0.90 Hexapeptide repeat of succinyl-transferase
Hexapep_2            PF14602.1     34 sp|P77181|PAAY_ECOLI -            196   2.5e-08   33.3  13.1   3   4   4.9e-06     0.036   13.6   1.9     2    32    72   103    71   105 0.94 Hexapeptide repeat of succinyl-transferase
Hexapep_2            PF14602.1     34 sp|P77181|PAAY_ECOLI -            196   2.5e-08   33.3  13.1   4   4   1.1e-07   0.00084   18.8   1.8     6    32    93   121    90   123 0.90 Hexapeptide repeat of succinyl-transferase
PaaX_C               PF08223.6    172 sp|P76086|PAAX_ECOLI -            316     1e-54  184.8   2.8   1   1   1.9e-58   1.4e-54  184.3   2.8     1   172   104   274   104   274 0.98 PaaX-like protein C-terminal domain
PaaX                 PF07848.7     70 sp|P76086|PAAX_ECOLI -            316   3.7e-29  100.5   0.5   1   1   9.4e-33   6.9e-29   99.6   0.5     3    70    20    87    18    87 0.98 PaaX-like protein
Aldedh               PF00171.17   462 sp|P77455|PAAZ_ECOLI -            681   5.3e-59  199.7   0.2   1   1   1.7e-62   6.4e-59  199.4   0.2    30   461    40   498    12   499 0.82 Aldehyde dehydrogenase family
MaoC_dehydratas      PF01575.14   123 sp|P77455|PAAZ_ECOLI -            681     2e-30  104.6   0.0   1   1   1.2e-33   4.6e-30  103.5   0.0     7   119   537   648   532   652 0.92 MaoC like domain
MaoC_dehydrat_N      PF13452.1    132 sp|P77455|PAAZ_ECOLI -            681    0.0043   16.8   0.6   3   3   0.00012      0.46   10.2   0.0    13   130   546   664   534   665 0.77 N-terminal half of MaoC dehydratase
Chorismate_bind      PF00425.13   257 sp|P05041|PABB_ECOLI -            453   2.3e-90  302.4   0.0   1   1   7.8e-94   2.9e-90  302.0   0.0     2   257   190   443   189   443 0.98 chorismate binding enzyme
Anth_synt_I_N        PF04715.8    140 sp|P05041|PABB_ECOLI -            453   3.2e-29  101.7   0.1   1   2     7e-32   2.6e-28   98.7   0.0     9   139    22   153    16   154 0.90 Anthranilate synthase component I, N terminal region
NDUF_B6              PF09782.4    156 sp|P05041|PABB_ECOLI -            453     0.023   14.5   0.3   1   1   1.2e-05     0.043   13.6   0.3    15    75   147   206   141   223 0.80 NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit
DUF273               PF03314.9    222 sp|P05041|PABB_ECOLI -            453     0.091   12.0   0.1   1   1   4.5e-05      0.17   11.2   0.1   168   217   147   197   141   202 0.80 Protein of unknown function, DUF273
Aminotran_4          PF01063.14   231 sp|P28305|PABC_ECOLI -            269   2.1e-42  145.1   0.0   1   1   1.7e-46   2.6e-42  144.8   0.0     2   225    38   259    37   266 0.87 Aminotransferase class IV
PagP                 PF07017.6    147 sp|P37001|PAGP_ECOLI -            186   4.5e-75  249.8   5.4   1   1   3.7e-79   5.5e-75  249.5   5.4     1   147    36   183    36   183 0.99 Antimicrobial peptide resistance and lipid A acylation protein PagP
OmpA                 PF00691.15    97 sp|P0A912|PAL_ECOLI  -            173   1.1e-19   70.5   0.0   1   1   2.9e-23   2.1e-19   69.6   0.0     1    97    72   167    72   167 0.95 OmpA family
Serglycin            PF04360.7    150 sp|P0A912|PAL_ECOLI  -            173    0.0067   16.1   0.1   1   1   1.2e-06    0.0093   15.7   0.1    73   135    14    79     3    92 0.83 Serglycin
Pantoate_transf      PF02548.10   261 sp|P31057|PANB_ECOLI -            264  2.4e-107  357.9   0.2   1   1  3.7e-111  2.7e-107  357.7   0.2     2   261     3   260     2   260 0.99 Ketopantoate hydroxymethyltransferase
PEP_mutase           PF13714.1    238 sp|P31057|PANB_ECOLI -            264    0.0013   18.0   0.5   1   1   5.5e-07     0.004   16.3   0.5     3   107    11   116     9   212 0.84 Phosphoenolpyruvate phosphomutase
Pantoate_ligase      PF02569.10   280 sp|P31663|PANC_ECOLI -            283  7.2e-124  412.0   0.1   1   1  2.2e-127    8e-124  411.9   0.1     1   280     1   280     1   280 0.98 Pantoate-beta-alanine ligase
FAD_syn              PF06574.7    158 sp|P31663|PANC_ECOLI -            283     0.034   13.7   0.0   1   2   5.1e-05      0.19   11.3   0.0    18    81    33    91    22   101 0.81 FAD synthetase
DUF4136              PF13590.1    151 sp|P31663|PANC_ECOLI -            283      0.16   11.9   0.0   1   1   7.7e-05      0.29   11.2   0.0    20    69   205   257   201   267 0.85 Domain of unknown function (DUF4136)
Asp_decarbox         PF02261.11   116 sp|P0A790|PAND_ECOLI -            126   3.1e-49  165.4   0.0   1   1   2.3e-53   3.5e-49  165.2   0.0     1   115     1   115     1   116 0.99 Aspartate decarboxylase
ApbA_C               PF08546.6    125 sp|P0A9J4|PANE_ECOLI -            303   1.4e-39  134.9   0.2   1   1   8.6e-43   2.1e-39  134.3   0.2     1   125   168   289   168   289 0.97 Ketopantoate reductase PanE/ApbA C terminal
ApbA                 PF02558.11   151 sp|P0A9J4|PANE_ECOLI -            303   9.9e-29   99.7   0.1   1   1   6.1e-32   1.5e-28   99.1   0.1     1   150     3   143     3   144 0.88 Ketopantoate reductase PanE/ApbA
NAD_Gly3P_dh_N       PF01210.18   157 sp|P0A9J4|PANE_ECOLI -            303   0.00097   18.9   0.2   1   3   5.3e-06     0.013   15.2   0.1     1   119     2   111     2   122 0.87 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_binding_2        PF03446.10   163 sp|P0A9J4|PANE_ECOLI -            303     0.096   12.5   0.0   1   1   9.3e-05      0.23   11.2   0.0     2    74     1    80     1   139 0.79 NAD binding domain of 6-phosphogluconate dehydrogenase
F420_oxidored        PF03807.12    96 sp|P0A9J4|PANE_ECOLI -            303      0.11   12.9   0.0   1   1   0.00023      0.56   10.6   0.0     1    83     2    85     2    94 0.75 NADP oxidoreductase coenzyme F420-dependent
ThiF                 PF00899.16   136 sp|P0A9J4|PANE_ECOLI -            303      0.15   11.9   1.3   1   2   0.00028      0.69    9.7   0.3     4    25     2    23     1    31 0.92 ThiF family
SSF                  PF00474.12   406 sp|P16256|PANF_ECOLI -            483  9.5e-143  475.6  29.8   1   1  7.9e-147  1.2e-142  475.3  29.8     1   406    36   432    36   432 1.00 Sodium:solute symporter family
DUF3749              PF12568.3    128 sp|P37613|PANM_ECOLI -            127   1.4e-47  160.5   0.0   1   1   5.1e-51   1.5e-47  160.3   0.0     1   128     2   125     2   125 0.98 Acetyltransferase (GNAT) domain
Acetyltransf_7       PF13508.1     79 sp|P37613|PANM_ECOLI -            127   3.2e-05   23.9   0.0   1   1   1.5e-08   4.3e-05   23.5   0.0     2    67    36   101    35   119 0.82 Acetyltransferase (GNAT) domain
Acetyltransf_10      PF13673.1    117 sp|P37613|PANM_ECOLI -            127   0.00042   20.4   0.1   1   1   2.6e-07   0.00078   19.5   0.1    30   100    23    95     9   117 0.77 Acetyltransferase (GNAT) domain
Acetyltransf_1       PF00583.19    83 sp|P37613|PANM_ECOLI -            127    0.0011   18.9   0.2   1   1   8.5e-07    0.0025   17.8   0.1     2    52    43    87    42   118 0.88 Acetyltransferase (GNAT) family
FR47                 PF08445.5     86 sp|P37613|PANM_ECOLI -            127      0.06   13.1   0.1   1   1   4.4e-05      0.13   12.0   0.1    10    47    49    86    40    89 0.77 FR47-like protein
DNA_topoisoIV        PF00521.15   426 sp|P0AFI2|PARC_ECOLI -            752    5e-133  444.0   0.0   1   1  1.2e-136  5.9e-133  443.8   0.0     1   426    29   466    29   466 0.97 DNA gyrase/topoisomerase IV, subunit A
DNA_gyraseA_C        PF03989.8     48 sp|P0AFI2|PARC_ECOLI -            752   9.2e-11   40.8   0.0   2   3   4.5e-07    0.0022   17.2   0.0     2    41   593   630   592   636 0.91 DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C        PF03989.8     48 sp|P0AFI2|PARC_ECOLI -            752   9.2e-11   40.8   0.0   3   3   7.6e-08   0.00037   19.7   0.0     1    36   641   675   641   685 0.95 DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseB          PF00204.20   173 sp|P20083|PARE_ECOLI -            630     4e-40  136.8   0.0   1   1   2.5e-43   7.4e-40  135.9   0.0     1   169   218   384   218   388 0.90 DNA gyrase B
DNA_gyraseB_C        PF00986.16    65 sp|P20083|PARE_ECOLI -            630   6.9e-25   86.5   2.7   1   1   4.5e-28   1.3e-24   85.6   2.7     2    65   554   620   553   620 0.92 DNA gyrase B subunit, carboxyl terminus
Toprim               PF01751.17   100 sp|P20083|PARE_ECOLI -            630   1.9e-19   69.4   0.0   1   1   1.3e-22     4e-19   68.4   0.0     1    98   413   522   413   524 0.97 Toprim domain
HATPase_c            PF02518.21   111 sp|P20083|PARE_ECOLI -            630   4.5e-13   48.8   0.1   1   1   2.6e-16   7.8e-13   48.1   0.1     2   109    28   170    27   172 0.93 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3          PF13589.1    137 sp|P20083|PARE_ECOLI -            630   0.00027   20.5   0.0   1   1   1.9e-07   0.00055   19.5   0.0     9    48    38    77    34   152 0.69 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Aminotran_3          PF00202.16   339 sp|P42588|PAT_ECOLI  -            459  3.7e-103  344.9   0.0   1   1  3.6e-107  5.3e-103  344.4   0.0     8   338    74   396    68   397 0.95 Aminotransferase class-III
SLT                  PF01464.15   121 sp|Q46790|PBL_ECOLI  -            158   1.5e-29  101.9   0.1   1   1   1.2e-33   1.7e-29  101.7   0.1     2   117    28   149    27   153 0.95 Transglycosylase SLT domain
Transpeptidase       PF00905.17   304 sp|P0AD65|PBP2_ECOLI -            633   2.3e-90  302.7   0.1   1   1   4.1e-94     3e-90  302.3   0.1     2   304   272   609   271   609 0.97 Penicillin binding protein transpeptidase domain
PBP_dimer            PF03717.10   179 sp|P0AD65|PBP2_ECOLI -            633   5.5e-44  150.3   1.2   1   1   1.1e-47   8.4e-44  149.7   1.2     2   178    64   239    63   240 0.93 Penicillin-binding Protein dimerisation domain
Peptidase_S11        PF00768.15   241 sp|P0AFI5|PBP7_ECOLI -            310   4.7e-89  297.8   1.0   1   1   1.5e-92   5.7e-89  297.5   1.0     2   240    30   261    29   262 0.98 D-alanyl-D-alanine carboxypeptidase
Beta-lactamase2      PF13354.1    197 sp|P0AFI5|PBP7_ECOLI -            310   1.7e-12   47.1   0.2   1   1   6.1e-16   2.3e-12   46.7   0.2     1   142    48   191    48   257 0.86 Beta-lactamase enzyme family
Peptidase_S13        PF02113.10   444 sp|P0AFI5|PBP7_ECOLI -            310   2.9e-05   22.7   1.3   1   2   5.6e-06     0.021   13.3   0.2     6    56    30    78    24   100 0.82 D-Ala-D-Ala carboxypeptidase 3 (S13) family
Peptidase_S13        PF02113.10   444 sp|P0AFI5|PBP7_ECOLI -            310   2.9e-05   22.7   1.3   2   2   0.00015      0.57    8.6   0.1   304   363   137   194   112   197 0.71 D-Ala-D-Ala carboxypeptidase 3 (S13) family
Beta-lactamase       PF00144.19   330 sp|P0AFI5|PBP7_ECOLI -            310   0.00015   20.9   0.3   1   2     2e-05     0.072   12.0   0.0    17    66    43    79    25    91 0.82 Beta-lactamase
Transgly             PF00912.17   178 sp|P02918|PBPA_ECOLI -            850   1.5e-67  226.3   0.0   1   1   4.2e-71   3.1e-67  225.3   0.0     1   177    54   229    54   230 0.98 Transglycosylase
Transpeptidase       PF00905.17   304 sp|P02918|PBPA_ECOLI -            850   3.3e-28   98.6   3.4   1   3   1.4e-29   1.1e-25   90.3   0.1     2   204   428   609   427   673 0.79 Penicillin binding protein transpeptidase domain
Transgly             PF00912.17   178 sp|P02919|PBPB_ECOLI -            844   2.8e-56  189.6   0.0   1   1   1.8e-59   4.5e-56  188.9   0.0    10   177   209   380   198   381 0.95 Transglycosylase
UB2H                 PF14814.1     85 sp|P02919|PBPB_ECOLI -            844     2e-27   94.7   0.1   1   1   1.6e-30     4e-27   93.7   0.1     1    85   113   197   113   197 0.99 Bifunctional transglycosylase second domain
PBP1_TM              PF14812.1     81 sp|P02919|PBPB_ECOLI -            844   2.1e-27   95.2   2.0   1   1   8.4e-31   2.1e-27   95.2   2.0     1    81     1    79     1    79 0.90 Transmembrane domain of transglycosylase PBP1 at N-terminal
Transpeptidase       PF00905.17   304 sp|P02919|PBPB_ECOLI -            844   1.3e-25   90.0   0.3   1   1   4.8e-28   1.2e-24   86.9   0.3     2   284   473   725   472   744 0.86 Penicillin binding protein transpeptidase domain
DUF4106              PF13388.1    422 sp|P02919|PBPB_ECOLI -            844      0.17   10.7   5.6   1   1   0.00011      0.27   10.1   5.6   204   242   790   828   739   834 0.74 Protein of unknown function (DUF4106)
Transgly             PF00912.17   178 sp|P76577|PBPC_ECOLI -            770   5.3e-54  182.2   0.0   1   1   1.4e-57   7.1e-54  181.8   0.0    10   177    60   226    49   227 0.94 Transglycosylase
BiPBP_C              PF06832.7     90 sp|P76577|PBPC_ECOLI -            770   2.9e-18   65.5   0.1   1   1   2.2e-21   1.1e-17   63.7   0.0     6    90   686   767   681   767 0.96 Penicillin-Binding Protein C-terminus Family
Transpeptidase       PF00905.17   304 sp|P76577|PBPC_ECOLI -            770   1.3e-13   50.6   0.0   1   1   4.9e-17   2.4e-13   49.7   0.0     5   282   305   535   301   548 0.84 Penicillin binding protein transpeptidase domain
PEPCK_ATP            PF01293.15   467 sp|P22259|PCKA_ECOLI -            540  2.6e-216  718.6   0.0   1   1    1e-219    3e-216  718.4   0.0     3   467    21   493    19   493 0.98 Phosphoenolpyruvate carboxykinase
AAA_33               PF13671.1    143 sp|P22259|PCKA_ECOLI -            540   0.00013   21.8   0.1   2   2   0.00013      0.39   10.5   0.1     1    17   243   259   243   266 0.88 AAA domain
PEPCK                PF00821.13   587 sp|P22259|PCKA_ECOLI -            540     0.047   11.8   0.1   2   2   4.2e-05      0.13   10.4   0.0   252   342   250   330   230   354 0.77 Phosphoenolpyruvate carboxykinase
AAA_16               PF13191.1    185 sp|P22259|PCKA_ECOLI -            540      0.11   12.4   0.0   1   1   8.9e-05      0.26   11.2   0.0    18    59   235   282   225   398 0.73 AAA ATPase domain
PolyA_pol_arg_C      PF12626.2    124 sp|P0ABF1|PCNB_ECOLI -            465   9.6e-43  144.7   2.1   1   1   5.1e-46   1.9e-42  143.8   2.1     1   123   335   458   335   459 0.94 Polymerase A arginine-rich C-terminus
PolyA_pol            PF01743.15   126 sp|P0ABF1|PCNB_ECOLI -            465   1.1e-39  135.4   0.6   2   2   1.3e-42   4.8e-39  133.4   0.1     1   126    62   193    62   193 0.93 Poly A polymerase head domain
PolyA_pol_RNAbd      PF12627.2     64 sp|P0ABF1|PCNB_ECOLI -            465   1.1e-21   76.2   0.2   1   2   1.1e-24   4.2e-21   74.2   0.0     1    61   220   280   220   283 0.96 Probable RNA and SrmB- binding site of polymerase A
HGTP_anticodon       PF03129.15    94 sp|P0ABF1|PCNB_ECOLI -            465     0.061   13.2   0.0   1   1   3.6e-05      0.13   12.1   0.0     1    57    28   108    28   120 0.94 Anticodon binding domain
PdxA                 PF04166.7    299 sp|P19624|PDXA_ECOLI -            329  1.3e-123  411.9   0.0   1   1  1.1e-127  1.6e-123  411.6   0.0     6   299    29   322    25   322 0.99 Pyridoxal phosphate biosynthetic protein PdxA
2-Hacid_dh_C         PF02826.14   178 sp|P05459|PDXB_ECOLI -            378   5.2e-32  110.4   0.0   1   1   2.2e-35   8.3e-32  109.7   0.0    30   177   110   255   103   256 0.86 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
DUF3410              PF11890.3     82 sp|P05459|PDXB_ECOLI -            378   5.7e-24   83.5   0.0   1   1   2.5e-27   9.3e-24   82.8   0.0     2    82   289   369   288   369 0.98 Domain of unknown function (DUF3410)
2-Hacid_dh           PF00389.25   133 sp|P05459|PDXB_ECOLI -            378   1.6e-18   66.4   0.0   1   1     6e-22   2.2e-18   65.9   0.0     2   126     4   281     3   285 0.94 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
NAD_binding_2        PF03446.10   163 sp|P05459|PDXB_ECOLI -            378     0.047   13.5   0.0   2   2   4.5e-05      0.17   11.7   0.0     3    94   118   207   116   230 0.73 NAD binding domain of 6-phosphogluconate dehydrogenase
Pyridox_oxidase      PF01243.15    89 sp|P0AFI7|PDXH_ECOLI -            218   4.2e-25   87.5   0.0   1   1   1.2e-28     6e-25   87.0   0.0     2    86    40   122    39   125 0.95 Pyridoxamine 5'-phosphate oxidase
PNPOx_C              PF10590.4     42 sp|P0AFI7|PDXH_ECOLI -            218   8.8e-20   69.9   2.7   1   1   4.7e-23   2.3e-19   68.5   2.7     1    42   178   218   178   218 0.98 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
ThuA                 PF06283.6    217 sp|P0AFI7|PDXH_ECOLI -            218     0.085   12.5   0.0   1   1   2.4e-05      0.12   12.0   0.0   152   198    50    90    28   102 0.81 Trehalose utilisation
PdxJ                 PF03740.8    239 sp|P0A794|PDXJ_ECOLI -            243  7.6e-106  352.6   4.5   1   1  1.2e-109  8.7e-106  352.3   4.5     2   237     5   238     4   240 0.99 Pyridoxal phosphate biosynthesis protein PdxJ
AP_endonuc_2         PF01261.19   213 sp|P0A794|PDXJ_ECOLI -            243    0.0017   17.6   4.7   1   1   6.4e-06     0.048   12.9   4.7     4   126    34   187    29   237 0.61 Xylose isomerase-like TIM barrel
Phos_pyr_kin         PF08543.7    246 sp|P40191|PDXK_ECOLI -            283   3.5e-26   91.9   0.0   2   2   1.3e-29   9.6e-26   90.4   0.0    60   234    88   266    66   275 0.90 Phosphomethylpyrimidine kinase
PfkB                 PF00294.19   301 sp|P40191|PDXK_ECOLI -            283   2.6e-16   59.6   0.0   1   1   4.5e-20   3.3e-16   59.2   0.0   137   281    96   256    38   263 0.84 pfkB family carbohydrate kinase
Phos_pyr_kin         PF08543.7    246 sp|P77150|PDXY_ECOLI -            287   1.6e-15   56.9   0.0   1   1   8.7e-19   2.2e-15   56.5   0.0    53   234    68   257    51   268 0.83 Phosphomethylpyrimidine kinase
PfkB                 PF00294.19   301 sp|P77150|PDXY_ECOLI -            287   4.4e-11   42.4   0.1   2   2   1.1e-13   2.6e-10   39.9   0.0   175   284   132   250    96   263 0.83 pfkB family carbohydrate kinase
Carb_kinase          PF01256.12   242 sp|P77150|PDXY_ECOLI -            287   0.00023   20.5   0.4   1   1   4.5e-07    0.0011   18.3   0.4   117   223   140   260   117   277 0.71 Carbohydrate kinase
SsgA                 PF04686.7    100 sp|P77150|PDXY_ECOLI -            287     0.004   16.8   0.0   1   1   5.7e-06     0.014   15.0   0.0    27    51   202   226   193   231 0.90 Streptomyces sporulation and cell division protein, SsgA
NIF                  PF03031.13   159 sp|P77150|PDXY_ECOLI -            287     0.033   13.8   0.1   1   1   2.2e-05     0.056   13.1   0.1    41    74   240   274   232   286 0.84 NLI interacting factor-like phosphatase
Archease             PF01951.11   137 sp|P77150|PDXY_ECOLI -            287       0.1   12.5   0.1   1   1   7.8e-05      0.19   11.6   0.1    14    48   235   269   231   277 0.86 Archease protein family (MTH1598/TM1083)
Phage_lambda_P       PF06992.6    233 sp|P77528|PEAD_ECOLI -             78   1.4e-47  162.0   0.6   1   1     1e-51   1.5e-47  161.8   0.6   156   233     1    78     1    78 0.99 Replication protein P
Peptidase_M17        PF00883.16   311 sp|P37095|PEPB_ECOLI -            427  1.3e-117  392.0   0.0   1   1  2.2e-121  1.6e-117  391.8   0.0     4   310   110   422   107   423 0.98 Cytosol aminopeptidase family, catalytic domain
DUF3663              PF12404.3     77 sp|P37095|PEPB_ECOLI -            427   1.3e-33  114.5   0.1   1   1   3.3e-37   2.4e-33  113.7   0.1     1    77     5    81     5    81 0.99 Peptidase
Peptidase_M20        PF01546.23   189 sp|P15288|PEPD_ECOLI -            485   3.7e-24   85.2   0.1   1   1   6.6e-28   4.9e-24   84.8   0.1     1   188    72   480    72   481 0.93 Peptidase family M20/M25/M40
M20_dimer            PF07687.9    112 sp|P15288|PEPD_ECOLI -            485   7.2e-09   35.3   0.0   1   2   2.6e-11   1.9e-07   30.8   0.0     4   110   209   293   200   295 0.84 Peptidase dimerisation domain
Peptidase_S51        PF03575.12   154 sp|P0A7C6|PEPE_ECOLI -            229   4.9e-45  153.0   0.0   1   1   1.2e-48   5.9e-45  152.7   0.0     1   152    49   200    49   202 0.98 Peptidase family S51
BPL_N                PF09825.4    367 sp|P0A7C6|PEPE_ECOLI -            229    0.0085   14.9   0.0   1   1   2.5e-06     0.012   14.3   0.0    50   120    80   151    67   158 0.91 Biotin-protein ligase, N terminal
GATase_3             PF07685.9    158 sp|P0A7C6|PEPE_ECOLI -            229     0.077   12.5   0.0   1   1   2.1e-05      0.11   12.1   0.0     4    83    76   155    73   175 0.83 CobB/CobQ-like glutamine amidotransferase domain
Peptidase_M24        PF00557.19   207 sp|P21165|PEPQ_ECOLI -            443   4.2e-43  147.3   0.1   1   1   1.1e-46   5.3e-43  147.0   0.1     1   207   168   430   168   430 0.83 Metallopeptidase family M24
DUF3793              PF12672.2    176 sp|P21165|PEPQ_ECOLI -            443     0.019   14.5   0.0   1   1   7.3e-06     0.036   13.6   0.0   104   127   320   355   279   362 0.72 Protein of unknown function (DUF3793)
Peptidase_M20        PF01546.23   189 sp|P29745|PEPT_ECOLI -            408   8.2e-20   71.1   0.0   1   1   4.4e-23   1.3e-19   70.4   0.0    35   188   139   402    74   403 0.84 Peptidase family M20/M25/M40
M20_dimer            PF07687.9    112 sp|P29745|PEPT_ECOLI -            408   1.5e-11   44.0   0.1   1   1   9.5e-15   2.8e-11   43.1   0.1     2   108   206   302   205   309 0.87 Peptidase dimerisation domain
Peptidase_M42        PF05343.9    292 sp|P29745|PEPT_ECOLI -            408   2.6e-06   26.4   0.0   1   2   4.4e-08   0.00013   20.8   0.0   134   194   140   201   110   235 0.90 M42 glutamyl aminopeptidase
Alba                 PF01918.16    70 sp|P29745|PEPT_ECOLI -            408     0.023   14.2   0.0   1   1   1.5e-05     0.045   13.3   0.0    12    55   295   407   289   408 0.66 Alba
Peptidase_M28        PF04389.12   179 sp|P29745|PEPT_ECOLI -            408      0.12   12.1   0.1   1   1   8.9e-05      0.26   10.9   0.1    19    70   134   182   126   214 0.84 Peptidase family M28
UPF0118              PF01594.11   327 sp|P0AFI9|PERM_ECOLI -            353   2.8e-83  279.6  41.1   1   1   4.2e-87   3.1e-83  279.4  41.1     3   326    20   345    18   346 0.97 Domain of unknown function DUF20
PFK                  PF00365.15   282 sp|P0A796|PFKA_ECOLI -            320  1.3e-129  431.1   2.2   1   1  3.2e-133  1.6e-129  430.8   2.2     1   281     3   277     3   278 0.98 Phosphofructokinase
NAD_kinase           PF01513.16   285 sp|P0A796|PFKA_ECOLI -            320   0.00082   18.2   0.0   1   1   2.7e-07    0.0013   17.5   0.0    67   107    85   124    57   126 0.88 ATP-NAD kinase
PfkB                 PF00294.19   301 sp|P06999|PFKB_ECOLI -            309   1.4e-59  201.7   0.4   1   1   2.3e-63   1.7e-59  201.4   0.4     8   298    14   296     7   299 0.92 pfkB family carbohydrate kinase
Phos_pyr_kin         PF08543.7    246 sp|P06999|PFKB_ECOLI -            309   8.6e-09   34.9   0.4   2   2   2.8e-12   2.1e-08   33.7   0.2   107   223   167   278   154   291 0.85 Phosphomethylpyrimidine kinase
Radical_SAM          PF04055.16   166 sp|P0A9N4|PFLA_ECOLI -            246   2.1e-32  112.5   0.1   1   1   5.7e-36   2.8e-32  112.1   0.1     1   158    24   178    24   184 0.96 Radical SAM superfamily
Fer4_12              PF13353.1    139 sp|P0A9N4|PFLA_ECOLI -            246   1.5e-18   67.2   0.0   1   1   4.2e-22   2.1e-18   66.7   0.0     1   133    16   145    16   151 0.87 4Fe-4S single cluster domain
Fer4_14              PF13394.1    119 sp|P0A9N4|PFLA_ECOLI -            246   6.5e-11   42.3   0.1   1   1   2.4e-14   1.2e-10   41.4   0.1     5    92    27   111    23   136 0.83 4Fe-4S single cluster domain
Radical_SAM          PF04055.16   166 sp|P32675|PFLC_ECOLI -            292   2.1e-22   80.0   0.0   1   1   5.8e-26   2.9e-22   79.6   0.0     1   157    41   222    41   231 0.94 Radical SAM superfamily
Fer4_12              PF13353.1    139 sp|P32675|PFLC_ECOLI -            292   1.5e-10   41.3   0.1   1   1     1e-13   5.1e-10   39.6   0.1     2    83    34   146    33   187 0.82 4Fe-4S single cluster domain
Fer4_14              PF13394.1    119 sp|P32675|PFLC_ECOLI -            292   1.1e-06   28.6   0.7   1   1   4.4e-09   2.2e-05   24.4   0.7     3   106    42   172    40   183 0.85 4Fe-4S single cluster domain
Radical_SAM          PF04055.16   166 sp|P75794|PFLE_ECOLI -            299   8.1e-30  104.1   0.0   1   1   7.2e-33   1.3e-29  103.4   0.0     1   158    19   229    19   234 0.98 Radical SAM superfamily
Fer4_12              PF13353.1    139 sp|P75794|PFLE_ECOLI -            299   1.3e-11   44.7   0.4   1   1   1.7e-13   3.1e-10   40.3   0.4     2    84    12   153    11   161 0.83 4Fe-4S single cluster domain
Fer4_14              PF13394.1    119 sp|P75794|PFLE_ECOLI -            299   1.7e-07   31.2   2.2   1   1   3.1e-08   5.7e-05   23.1   2.2     1    92    20   164    19   183 0.77 4Fe-4S single cluster domain
Fer4_13              PF13370.1     58 sp|P75794|PFLE_ECOLI -            299    0.0067   16.7   0.4   1   1   1.2e-05     0.023   15.0   0.3     8    58    54    99    47    99 0.82 4Fe-4S single cluster domain
Fer4_19              PF06902.6     64 sp|P75794|PFLE_ECOLI -            299     0.012   15.4   0.2   1   1   1.6e-05     0.029   14.1   0.2     8    61    44    99    40   102 0.87 Divergent 4Fe-4S mono-cluster
Fer4_15              PF13459.1     65 sp|P75794|PFLE_ECOLI -            299      0.11   13.0   4.0   1   1   4.5e-05     0.083   13.4   1.4     9    65    53    99    45    99 0.74 4Fe-4S single cluster domain
G3P_antiterm         PF04309.7    175 sp|P75794|PFLE_ECOLI -            299      0.11   11.4   0.0   1   1   0.00011      0.21   10.6   0.0    32    68   200   236   190   242 0.86 Glycerol-3-phosphate responsive antiterminator
Glyco_tranf_2_3      PF13641.1    228 sp|P75905|PGAC_ECOLI -            441   4.1e-41  141.2   0.0   1   1   2.5e-44   4.1e-41  141.2   0.0     1   228    75   299    75   299 0.96 Glycosyltransferase like family 2
Glycos_transf_2      PF00535.21   169 sp|P75905|PGAC_ECOLI -            441   2.7e-36  124.7   0.0   1   1   2.6e-39   4.2e-36  124.1   0.0     1   168    78   245    78   246 0.95 Glycosyl transferase family 2
Glyco_trans_2_3      PF13632.1    193 sp|P75905|PGAC_ECOLI -            441   9.4e-26   90.7  12.9   1   1   5.7e-29   9.4e-26   90.7  12.9     1   178   158   363   158   423 0.72 Glycosyl transferase family group 2
Glyco_transf_21      PF13506.1    175 sp|P75905|PGAC_ECOLI -            441   1.4e-14   53.7   0.1   1   1   1.3e-17   2.1e-14   53.1   0.1    17   175   141   298    99   298 0.88 Glycosyl transferase family 21
Chitin_synth_2       PF03142.10   527 sp|P75905|PGAC_ECOLI -            441   2.5e-08   32.7   5.8   1   2   7.7e-10   1.3e-06   27.1   0.0   177   305   131   257    85   261 0.85 Chitin synthase
Glyco_tranf_2_2      PF10111.4    281 sp|P75905|PGAC_ECOLI -            441   5.5e-08   32.2   0.1   1   1   5.8e-11   9.5e-08   31.4   0.1     1   111    78   178    78   185 0.94 Glycosyltransferase like family 2
Glyco_tranf_2_4      PF13704.1     97 sp|P75905|PGAC_ECOLI -            441   1.8e-05   24.9   0.2   1   1     2e-08   3.3e-05   24.1   0.2     2    87    85   171    84   176 0.77 Glycosyl transferase family 2
Cellulose_synt       PF03552.9    722 sp|P75905|PGAC_ECOLI -            441   0.00013   20.4   4.0   2   2     1e-06    0.0017   16.7   6.7   415   549   245   378   198   414 0.77 Cellulose synthase
MARVEL               PF01284.18   144 sp|P75905|PGAC_ECOLI -            441       1.6    8.5  19.4   2   2   0.00018      0.29   10.9   3.4    77   104   323   350   307   392 0.75 Membrane-associating domain
GHL13                PF14883.1    294 sp|P75906|PGAB_ECOLI -            672    3e-136  453.3   4.6   1   1  8.6e-140  4.3e-136  452.8   4.6     1   294   318   645   318   645 0.92 Hypothetical glycosyl hydrolase family 13
Polysacc_deac_1      PF01522.16   124 sp|P75906|PGAB_ECOLI -            672   1.3e-31  108.7   0.0   1   1   7.7e-35   3.8e-31  107.2   0.0     2   123   102   270   101   271 0.92 Polysaccharide deacetylase
DUF187               PF02638.10   311 sp|P75906|PGAB_ECOLI -            672    0.0011   17.8   0.0   2   3   2.3e-06     0.012   14.5   0.0   131   224   435   534   424   568 0.88 Glycosyl hydrolase like GH101
PGK                  PF00162.14   384 sp|P0A799|PGK_ECOLI  -            387  8.7e-142  472.2   0.3   1   1  6.7e-146    1e-141  472.0   0.3     2   384     6   373     5   373 0.99 Phosphoglycerate kinase
HAD_2                PF13419.1    176 sp|P77366|PGMB_ECOLI -            219   1.4e-22   80.7   0.0   1   1   4.4e-26   1.6e-22   80.5   0.0     1   176     6   190     6   190 0.87 Haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P77366|PGMB_ECOLI -            219   1.4e-11   45.2   0.0   1   1   5.5e-15     2e-11   44.6   0.0     3   214     5   183     3   184 0.85 haloacid dehalogenase-like hydrolase
Hydrolase_like       PF13242.1     75 sp|P77366|PGMB_ECOLI -            219   5.7e-07   29.1   0.0   1   1   2.9e-10   1.1e-06   28.2   0.0     3    56   146   198   144   208 0.93 HAD-hyrolase-like
HAD                  PF12710.2    192 sp|P77366|PGMB_ECOLI -            219    0.0035   17.5   0.0   1   1   1.7e-06    0.0064   16.6   0.0     1   122     6   127     6   191 0.56 haloacid dehalogenase-like hydrolase
PGM_PMM_I            PF02878.11   138 sp|P36938|PGM_ECOLI  -            546   9.9e-36  122.2   0.1   1   2     1e-38   3.7e-35  120.4   0.1     2   133    40   179    39   183 0.97 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
PGM_PMM_III          PF02880.11   113 sp|P36938|PGM_ECOLI  -            546   2.9e-28   98.1   0.0   1   1   1.6e-31   5.8e-28   97.1   0.0     1   113   320   440   320   440 0.95 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
PGM_PMM_II           PF02879.11   104 sp|P36938|PGM_ECOLI  -            546   3.9e-13   49.6   0.0   1   1   3.2e-16   1.2e-12   48.0   0.0     2   104   210   317   209   317 0.90 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
PGM_PMM_IV           PF00408.15    73 sp|P36938|PGM_ECOLI  -            546     4e-13   49.1   0.0   1   1   3.2e-16   1.2e-12   47.6   0.0    12    72   479   539   465   542 0.90 Phosphoglucomutase/phosphomannomutase, C-terminal domain
PAP2                 PF01569.16   129 sp|P0A924|PGPB_ECOLI -            254   2.7e-28   98.2   1.2   2   2   3.7e-32   2.7e-28   98.2   1.2     6   126    78   232    73   234 0.89 PAP2 superfamily
PAP2_C               PF14360.1     74 sp|P0A924|PGPB_ECOLI -            254       8.3    6.7   9.0   2   2   3.8e-05      0.28   11.4   1.1     8    70   161   224   158   228 0.72 PAP2 superfamily C-terminal
CDP-OH_P_transf      PF01066.16   101 sp|P0ABF8|PGSA_ECOLI -            182   1.8e-16   60.2  10.8   1   2   1.2e-20   1.8e-16   60.2  10.8     2    77     3    91     2   141 0.81 CDP-alcohol phosphatidyltransferase
AA_permease          PF00324.16   478 sp|P24207|PHEP_ECOLI -            458  1.7e-117  392.7  42.3   1   1  3.9e-121  1.9e-117  392.5  42.3     1   457    27   444    27   458 0.94 Amino acid permease
AA_permease_2        PF13520.1    426 sp|P24207|PHEP_ECOLI -            458   2.7e-43  148.1  46.9   1   1   6.9e-47   3.4e-43  147.7  46.9     9   408    31   430    27   452 0.83 Amino acid permease
Glu_syn_central      PF04898.9    288 sp|P24207|PHEP_ECOLI -            458     0.083   12.1   0.0   1   1   2.9e-05      0.14   11.3   0.0   184   240    27    83    16    96 0.83 Glutamate synthase central domain
ABC_tran             PF00005.22   137 sp|P16677|PHNC_ECOLI -            262   2.8e-35  121.5   0.0   1   1   1.1e-37   4.8e-35  120.8   0.0     1   137    20   181    20   181 0.96 ABC transporter
AAA_21               PF13304.1    303 sp|P16677|PHNC_ECOLI -            262   1.6e-09   38.1   0.0   1   2   0.00013     0.053   13.4   0.0     3    22    34    53    32   108 0.84 AAA domain
AAA_21               PF13304.1    303 sp|P16677|PHNC_ECOLI -            262   1.6e-09   38.1   0.0   2   2   1.5e-07   6.5e-05   23.0   0.0   236   298   152   212   132   218 0.89 AAA domain
AAA_29               PF13555.1     62 sp|P16677|PHNC_ECOLI -            262   9.7e-06   25.0   0.1   1   1   5.8e-08   2.5e-05   23.7   0.1    14    51    22    58    12    62 0.77 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|P16677|PHNC_ECOLI -            262   1.2e-05   25.3   4.9   1   1   4.7e-07    0.0002   21.4   4.8    12    80    19    83    15   240 0.53 AAA ATPase domain
AAA_22               PF13401.1    131 sp|P16677|PHNC_ECOLI -            262   4.8e-05   23.5   0.4   1   2   1.4e-05     0.006   16.7   0.1     3    24    29    50    26    72 0.92 AAA domain
DUF258               PF03193.11   161 sp|P16677|PHNC_ECOLI -            262   9.3e-05   21.6   0.0   1   1   3.6e-07   0.00015   20.9   0.0    16    58    10    53     2    92 0.82 Protein of unknown function, DUF258
AAA_15               PF13175.1    415 sp|P16677|PHNC_ECOLI -            262   0.00019   20.5   0.0   2   2   0.00028      0.12   11.4   0.0   371   410   170   211   158   213 0.89 AAA ATPase domain
AAA_25               PF13481.1    194 sp|P16677|PHNC_ECOLI -            262   0.00021   20.7   0.9   1   2   4.2e-05     0.018   14.4   0.0    31    65    28    61     9    78 0.79 AAA domain
SMC_N                PF02463.14   220 sp|P16677|PHNC_ECOLI -            262   0.00021   20.5   0.1   1   1   0.00023     0.096   11.9   0.1   135   197   106   210     8   230 0.47 RecF/RecN/SMC N terminal domain
AAA_23               PF13476.1    202 sp|P16677|PHNC_ECOLI -            262    0.0003   21.1   0.0   1   1     1e-06   0.00044   20.6   0.0     7    48    14    59    11   103 0.84 AAA domain
SbcCD_C              PF13558.1     90 sp|P16677|PHNC_ECOLI -            262    0.0012   18.7   0.1   1   1     1e-05    0.0043   16.9   0.1    26    89   146   196   129   197 0.84 Putative exonuclease SbcCD, C subunit
AAA_18               PF13238.1    129 sp|P16677|PHNC_ECOLI -            262    0.0017   18.6   0.1   1   1     2e-05    0.0086   16.3   0.0     1    23    33    61    33   109 0.72 AAA domain
MMR_HSR1             PF01926.18   116 sp|P16677|PHNC_ECOLI -            262     0.002   18.0   0.5   1   1     4e-05     0.017   15.0   0.5     2    21    33    56    32   232 0.64 50S ribosome-binding GTPase
Mg_chelatase         PF01078.16   207 sp|P16677|PHNC_ECOLI -            262    0.0027   16.8   0.8   1   2   3.6e-05     0.015   14.4   0.2     4    47    12    55     9    71 0.89 Magnesium chelatase, subunit ChlI
NACHT                PF05729.7    166 sp|P16677|PHNC_ECOLI -            262    0.0032   17.1   0.0   1   1   1.5e-05    0.0065   16.1   0.0     2    27    32    57    31    82 0.87 NACHT domain
AAA_5                PF07728.9    139 sp|P16677|PHNC_ECOLI -            262    0.0035   17.0   0.2   1   1     2e-05    0.0084   15.8   0.1     2    24    33    56    32    73 0.88 AAA domain (dynein-related subfamily)
AAA_33               PF13671.1    143 sp|P16677|PHNC_ECOLI -            262    0.0051   16.6   1.7   1   1   3.2e-05     0.013   15.3   1.7     1    20    32    51    32   255 0.87 AAA domain
AAA_17               PF13207.1    121 sp|P16677|PHNC_ECOLI -            262    0.0052   17.6   0.1   1   1   3.9e-05     0.016   15.9   0.0     2    20    33    51    32   106 0.88 AAA domain
AAA_28               PF13521.1    163 sp|P16677|PHNC_ECOLI -            262    0.0052   16.7   0.1   1   1   3.3e-05     0.014   15.3   0.0     2    22    33    53    32   100 0.70 AAA domain
AAA_30               PF13604.1    196 sp|P16677|PHNC_ECOLI -            262    0.0066   16.0   0.5   1   1     8e-05     0.034   13.7   0.0     3    44    15    56    13    89 0.66 AAA domain
AAA_10               PF12846.2    304 sp|P16677|PHNC_ECOLI -            262    0.0092   15.4   2.9   1   2   0.00014     0.061   12.7   0.2     4    21    33    50    31    56 0.88 AAA-like domain
PhoH                 PF02562.11   205 sp|P16677|PHNC_ECOLI -            262     0.019   14.1   0.3   1   2   0.00031      0.13   11.4   0.0     4    35    11    46     9    77 0.86 PhoH-like protein
AAA_19               PF13245.1     76 sp|P16677|PHNC_ECOLI -            262     0.033   13.9   0.1   1   1   0.00025      0.11   12.3   0.1     8    51    28    70    21    89 0.68 Part of AAA domain
PRK                  PF00485.13   194 sp|P16677|PHNC_ECOLI -            262     0.038   13.5   0.0   1   1   0.00036      0.15   11.5   0.0     2    65    33    96    32   143 0.78 Phosphoribulokinase / Uridine kinase family
MobB                 PF03205.9    140 sp|P16677|PHNC_ECOLI -            262     0.046   13.4   0.0   1   1   0.00025      0.11   12.2   0.0     2    21    32    51    31    63 0.86 Molybdopterin guanine dinucleotide synthesis protein B
G-alpha              PF00503.15   389 sp|P16677|PHNC_ECOLI -            262     0.047   12.3   0.0   1   1   0.00016     0.067   11.8   0.0    61    87    33    59    17   108 0.80 G-protein alpha subunit
T2SE                 PF00437.15   272 sp|P16677|PHNC_ECOLI -            262     0.049   12.5   0.1   1   1   0.00021     0.089   11.6   0.1   105   155     8    57     2    65 0.76 Type II/IV secretion system protein
UPF0079              PF02367.12   123 sp|P16677|PHNC_ECOLI -            262      0.05   13.2   0.0   1   1   0.00028      0.12   12.0   0.0    11    39    26    54    13    63 0.82 Uncharacterised P-loop hydrolase UPF0079
Arch_ATPase          PF01637.13   234 sp|P16677|PHNC_ECOLI -            262     0.067   12.8   0.0   1   1    0.0003      0.13   11.9   0.0    20    41    30    51    14    95 0.82 Archaeal ATPase
cobW                 PF02492.14   178 sp|P16677|PHNC_ECOLI -            262      0.12   11.8   0.2   1   1   0.00058      0.24   10.8   0.2     3    21    33    51    31    67 0.85 CobW/HypB/UreG, nucleotide-binding domain
Rad17                PF03215.10   519 sp|P16677|PHNC_ECOLI -            262      0.13   10.8   0.0   1   1   0.00045      0.19   10.3   0.0    32    67    17    52     5    62 0.87 Rad17 cell cycle checkpoint protein
AAA_14               PF13173.1    128 sp|P16677|PHNC_ECOLI -            262      0.14   12.0   0.0   1   1    0.0012      0.52   10.2   0.0     2    22    30    50    29    66 0.88 AAA domain
RNA_helicase         PF00910.17   107 sp|P16677|PHNC_ECOLI -            262      0.16   12.1   0.0   1   1   0.00096      0.41   10.8   0.0     2    23    34    55    33    99 0.80 RNA helicase
AAA_24               PF13479.1    213 sp|P16677|PHNC_ECOLI -            262      0.21   11.1   0.8   1   1   0.00092      0.39   10.2   0.1     5    23    32    50    29    61 0.89 AAA domain
BPD_transp_1         PF00528.17   185 sp|P16683|PHNE_ECOLI -            259   1.1e-22   80.4   5.1   2   2   1.5e-26   1.1e-22   80.4   5.1     2   179    88   258    87   259 0.98 Binding-protein-dependent transport system inner membrane component
DUF3816              PF12822.2    172 sp|P16683|PHNE_ECOLI -            259     0.047   13.5   5.6   1   1   1.2e-05     0.089   12.6   5.6    10   115    80   221    72   252 0.74 Protein of unknown function (DUF3816)
PhnH                 PF05845.7    192 sp|P16686|PHNH_ECOLI -            194   1.5e-67  226.8   0.7   1   1   2.2e-71   1.6e-67  226.6   0.7     1   192     3   193     3   193 0.99 Bacterial phosphonate metabolism protein (PhnH)
Staphostatin_A       PF09022.5    105 sp|P16686|PHNH_ECOLI -            194     0.031   14.1   0.0   1   1   5.7e-06     0.042   13.6   0.0    19    72    31    84    20   115 0.84 Staphostatin A
PhnJ                 PF06007.6    279 sp|P16688|PHNJ_ECOLI -            281  1.7e-155  515.8   0.1   1   1  1.3e-159  1.9e-155  515.6   0.1     3   278     5   280     3   281 0.99 Phosphonate metabolism protein PhnJ
PhnG                 PF06754.7    147 sp|P16685|PHNG_ECOLI -            150   1.7e-60  202.8   3.9   1   1   2.6e-64     2e-60  202.7   3.9     2   147     4   149     3   149 0.99 Phosphonate metabolism protein PhnG
DUF2345              PF10106.4    156 sp|P16685|PHNG_ECOLI -            150     0.025   14.1   0.1   1   1   5.5e-06     0.041   13.4   0.1    73   115    10    52     3    89 0.89 Uncharacterized protein conserved in bacteria (DUF2345)
ABC_tran             PF00005.22   137 sp|P16678|PHNK_ECOLI -            252   5.4e-33  114.1   0.0   1   1     2e-35     7e-33  113.8   0.0     2   136    22   173    21   174 0.92 ABC transporter
AAA_21               PF13304.1    303 sp|P16678|PHNK_ECOLI -            252   1.1e-10   42.0   0.0   1   2   2.9e-05      0.01   15.8   0.0     3    20    35    52    33    83 0.87 AAA domain
AAA_21               PF13304.1    303 sp|P16678|PHNK_ECOLI -            252   1.1e-10   42.0   0.0   2   2   6.2e-08   2.2e-05   24.5   0.0   234   299   143   206    92   208 0.81 AAA domain
AAA_29               PF13555.1     62 sp|P16678|PHNK_ECOLI -            252   2.4e-06   26.9   0.0   1   1     2e-08   7.2e-06   25.4   0.0    12    59    21    68    19    70 0.84 P-loop containing region of AAA domain
oligo_HPY            PF08352.7     64 sp|P16678|PHNK_ECOLI -            252   2.8e-06   27.5   0.0   1   1   1.4e-08     5e-06   26.7   0.0     1    26   225   250   225   252 0.94 Oligopeptide/dipeptide transporter, C-terminal region
AAA_22               PF13401.1    131 sp|P16678|PHNK_ECOLI -            252   2.8e-05   24.2   0.3   1   1   8.7e-07   0.00031   20.9   0.3     9   128    36   209    31   212 0.75 AAA domain
AAA_25               PF13481.1    194 sp|P16678|PHNK_ECOLI -            252   5.4e-05   22.6   0.4   1   1   6.2e-07   0.00022   20.6   0.4    29    97    28    91    16   205 0.75 AAA domain
AAA_15               PF13175.1    415 sp|P16678|PHNK_ECOLI -            252   7.7e-05   21.9   0.0   1   2   0.00013     0.045   12.7   0.0    23    43    32    62    11    79 0.71 AAA ATPase domain
AAA_23               PF13476.1    202 sp|P16678|PHNK_ECOLI -            252   0.00013   22.3   0.0   1   1   4.3e-07   0.00015   22.1   0.0     9    53    20    65    18   137 0.85 AAA domain
AAA_16               PF13191.1    185 sp|P16678|PHNK_ECOLI -            252   0.00049   20.1   0.5   1   1   2.6e-06   0.00092   19.2   0.5    25    55    32    64    25   206 0.74 AAA ATPase domain
NACHT                PF05729.7    166 sp|P16678|PHNK_ECOLI -            252   0.00081   19.0   0.0   1   1   6.7e-06    0.0024   17.5   0.0     3    25    34    56    32    84 0.84 NACHT domain
AAA_18               PF13238.1    129 sp|P16678|PHNK_ECOLI -            252   0.00081   19.6   0.0   1   1   5.3e-06    0.0019   18.5   0.0     3    42    36    75    34    91 0.82 AAA domain
AAA_17               PF13207.1    121 sp|P16678|PHNK_ECOLI -            252   0.00093   20.0   0.1   1   1   5.1e-06    0.0018   19.0   0.0     1    32    33    66    33   184 0.81 AAA domain
NTPase_1             PF03266.10   168 sp|P16678|PHNK_ECOLI -            252    0.0016   18.1   0.1   1   2   0.00018     0.064   12.9   0.1     2    26    34    58    33    65 0.86 NTPase
DUF258               PF03193.11   161 sp|P16678|PHNK_ECOLI -            252    0.0045   16.2   0.0   1   1     2e-05     0.007   15.5   0.0    24    69    19    65     6    71 0.82 Protein of unknown function, DUF258
NB-ARC               PF00931.17   287 sp|P16678|PHNK_ECOLI -            252    0.0048   15.7   0.0   1   1     2e-05    0.0069   15.2   0.0    21    61    33    76    30    93 0.75 NB-ARC domain
SbcCD_C              PF13558.1     90 sp|P16678|PHNK_ECOLI -            252    0.0054   16.6   0.0   1   1   3.2e-05     0.011   15.5   0.0    51    89   151   189   143   190 0.85 Putative exonuclease SbcCD, C subunit
MobB                 PF03205.9    140 sp|P16678|PHNK_ECOLI -            252    0.0055   16.4   0.0   1   1   2.5e-05     0.009   15.7   0.0     2    25    33    56    32    64 0.85 Molybdopterin guanine dinucleotide synthesis protein B
UPF0079              PF02367.12   123 sp|P16678|PHNK_ECOLI -            252    0.0062   16.1   0.0   1   1   4.9e-05     0.017   14.7   0.0    11    45    27    62    21    84 0.82 Uncharacterised P-loop hydrolase UPF0079
AAA_19               PF13245.1     76 sp|P16678|PHNK_ECOLI -            252     0.014   15.1   0.0   1   1   9.9e-05     0.035   13.8   0.0    12    48    33    71    27    96 0.71 Part of AAA domain
Arch_ATPase          PF01637.13   234 sp|P16678|PHNK_ECOLI -            252     0.015   14.9   0.0   1   1   7.2e-05     0.025   14.2   0.0    22    67    33    77    28    94 0.84 Archaeal ATPase
AAA_10               PF12846.2    304 sp|P16678|PHNK_ECOLI -            252     0.017   14.5   0.0   1   1   0.00013     0.044   13.2   0.0     6    24    36    54    33    64 0.85 AAA-like domain
Pox_A32              PF04665.7    241 sp|P16678|PHNK_ECOLI -            252      0.02   14.1   0.0   1   1   9.3e-05     0.033   13.4   0.0    16    37    34    55    32    63 0.87 Poxvirus A32 protein
AAA_5                PF07728.9    139 sp|P16678|PHNK_ECOLI -            252     0.024   14.3   0.0   1   1   0.00015     0.054   13.2   0.0     4    24    36    59    34    85 0.83 AAA domain (dynein-related subfamily)
cobW                 PF02492.14   178 sp|P16678|PHNK_ECOLI -            252     0.028   13.8   0.1   1   1   0.00013     0.045   13.2   0.1     2    22    33    53    32    63 0.84 CobW/HypB/UreG, nucleotide-binding domain
AAA_33               PF13671.1    143 sp|P16678|PHNK_ECOLI -            252     0.033   14.0   0.2   1   1    0.0002      0.07   13.0   0.2     4    26    36    58    33   213 0.75 AAA domain
PRK                  PF00485.13   194 sp|P16678|PHNK_ECOLI -            252     0.045   13.2   0.0   1   1    0.0003      0.11   12.1   0.0     1    25    33    57    33    91 0.79 Phosphoribulokinase / Uridine kinase family
SMC_N                PF02463.14   220 sp|P16678|PHNK_ECOLI -            252     0.048   12.8   0.1   1   1   0.00042      0.15   11.2   0.1    26    62    33    68    20   226 0.65 RecF/RecN/SMC N terminal domain
DUF87                PF01935.12   229 sp|P16678|PHNK_ECOLI -            252     0.053   13.3   0.0   1   1   0.00025      0.09   12.5   0.0    26    48    34    56    22    62 0.89 Domain of unknown function DUF87
AAA_30               PF13604.1    196 sp|P16678|PHNK_ECOLI -            252     0.059   12.9   0.0   1   1   0.00052      0.18   11.3   0.0    20    48    33    61    29    77 0.84 AAA domain
AAA                  PF00004.24   132 sp|P16678|PHNK_ECOLI -            252     0.066   13.4   0.0   1   2    0.0025      0.89    9.7   0.0     3    23    36    56    34   102 0.79 ATPase family associated with various cellular activities (AAA)
RNA_helicase         PF00910.17   107 sp|P16678|PHNK_ECOLI -            252     0.097   12.8   0.0   1   1   0.00054      0.19   11.9   0.0     3    28    36    61    34    77 0.73 RNA helicase
AAA_28               PF13521.1    163 sp|P16678|PHNK_ECOLI -            252     0.099   12.5   0.0   1   1    0.0012      0.44   10.4   0.0     4    30    36    66    34    97 0.75 AAA domain
DUF3987              PF13148.1    378 sp|P16678|PHNK_ECOLI -            252       0.1   11.1   0.0   1   1   0.00043      0.15   10.5   0.0    44    85    36    77    33    87 0.90 Protein of unknown function (DUF3987)
Mg_chelatase         PF01078.16   207 sp|P16678|PHNK_ECOLI -            252      0.11   11.6   0.0   1   1   0.00063      0.22   10.6   0.0    27    70    36    79    31   113 0.81 Magnesium chelatase, subunit ChlI
ATP-synt_ab          PF00006.20   215 sp|P16678|PHNK_ECOLI -            252      0.12   11.8   0.0   1   1   0.00042      0.15   11.5   0.0     7    39    23    55    18   112 0.89 ATP synthase alpha/beta family, nucleotide-binding domain
Septin               PF00735.13   281 sp|P16678|PHNK_ECOLI -            252      0.13   11.2   0.0   1   1   0.00054      0.19   10.6   0.0     9    33    36    59    32    88 0.76 Septin
MMR_HSR1             PF01926.18   116 sp|P16678|PHNK_ECOLI -            252      0.14   12.1   0.0   1   1   0.00063      0.22   11.4   0.0     2    21    34    53    33    91 0.82 50S ribosome-binding GTPase
KAP_NTPase           PF07693.9    325 sp|P16678|PHNK_ECOLI -            252      0.14   11.1   0.0   1   1    0.0004      0.14   11.1   0.0    19    47    30    58    23   165 0.85 KAP family P-loop domain
Miro                 PF08477.8    119 sp|P16678|PHNK_ECOLI -            252      0.14   12.6   0.0   1   1   0.00064      0.23   11.9   0.0     3    25    35    57    34    83 0.78 Miro-like protein
GTP_EFTU             PF00009.22   188 sp|P16678|PHNK_ECOLI -            252      0.14   11.5   0.0   1   1   0.00068      0.24   10.8   0.0     6    47    34    73    32    84 0.71 Elongation factor Tu GTP binding domain
PduV-EutP            PF10662.4    143 sp|P16678|PHNK_ECOLI -            252      0.15   11.5   0.0   1   1   0.00081      0.29   10.6   0.0     6    23    36    53    32    74 0.79 Ethanolamine utilisation - propanediol utilisation
AAA_24               PF13479.1    213 sp|P16678|PHNK_ECOLI -            252      0.27   10.7   0.5   1   1    0.0014      0.48    9.9   0.2     8    23    36    51    33    56 0.87 AAA domain
PhnI                 PF05861.7    359 sp|P16687|PHNI_ECOLI -            354  6.8e-168  557.7   0.0   1   1  5.1e-172  7.6e-168  557.6   0.0     1   357     1   352     1   354 0.99 Bacterial phosphonate metabolism protein (PhnI)
ABC_tran             PF00005.22   137 sp|P16679|PHNL_ECOLI -            226   2.1e-29  102.5   0.0   1   1     6e-32   2.6e-29  102.2   0.0     1   137    24   178    24   178 0.91 ABC transporter
AAA_21               PF13304.1    303 sp|P16679|PHNL_ECOLI -            226   5.4e-07   29.8   0.0   2   2     2e-06   0.00088   19.3   0.0   233   291   146   201   132   203 0.89 AAA domain
AAA_16               PF13191.1    185 sp|P16679|PHNL_ECOLI -            226   1.9e-06   28.0   0.2   1   1   6.7e-09   2.9e-06   27.3   0.2    23    52    33    69    24   214 0.72 AAA ATPase domain
SMC_N                PF02463.14   220 sp|P16679|PHNL_ECOLI -            226   3.3e-06   26.5   0.0   2   2   2.7e-06    0.0012   18.1   0.0   134   202   147   211   140   222 0.81 RecF/RecN/SMC N terminal domain
AAA_25               PF13481.1    194 sp|P16679|PHNL_ECOLI -            226   0.00016   21.1   0.1   1   2   3.2e-06    0.0014   18.0   0.0    31    76    32    94    20   149 0.83 AAA domain
AAA_33               PF13671.1    143 sp|P16679|PHNL_ECOLI -            226   0.00019   21.3   0.2   1   1   1.5e-06   0.00067   19.5   0.1     2    22    37    57    36   151 0.53 AAA domain
AAA_22               PF13401.1    131 sp|P16679|PHNL_ECOLI -            226   0.00031   20.9   0.0   1   1     1e-06   0.00046   20.3   0.0     5    47    35    81    31   212 0.79 AAA domain
AAA_29               PF13555.1     62 sp|P16679|PHNL_ECOLI -            226   0.00033   20.1   0.0   1   1   1.5e-06   0.00064   19.1   0.0    20    43    32    54    24    67 0.79 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|P16679|PHNL_ECOLI -            226    0.0004   19.6   0.0   1   1   1.3e-06   0.00055   19.1   0.0    34    68    33    67     5    97 0.81 Protein of unknown function, DUF258
AAA_17               PF13207.1    121 sp|P16679|PHNL_ECOLI -            226    0.0017   19.1   0.0   1   1   6.8e-06     0.003   18.3   0.0     1    35    36    73    36   135 0.77 AAA domain
NACHT                PF05729.7    166 sp|P16679|PHNL_ECOLI -            226    0.0023   17.6   0.0   1   1   3.2e-05     0.014   15.0   0.0     2    21    36    55    35    63 0.90 NACHT domain
SbcCD_C              PF13558.1     90 sp|P16679|PHNL_ECOLI -            226    0.0032   17.3   0.3   1   1   0.00011     0.049   13.5   0.3    64    89   168   193   139   194 0.88 Putative exonuclease SbcCD, C subunit
AAA_14               PF13173.1    128 sp|P16679|PHNL_ECOLI -            226    0.0046   16.8   0.0   1   1   1.9e-05    0.0082   16.0   0.0     3    39    35    71    33   106 0.82 AAA domain
UPF0079              PF02367.12   123 sp|P16679|PHNL_ECOLI -            226    0.0089   15.6   0.0   1   1   3.4e-05     0.015   14.9   0.0    11    39    30    58    24    68 0.82 Uncharacterised P-loop hydrolase UPF0079
AAA_30               PF13604.1    196 sp|P16679|PHNL_ECOLI -            226     0.021   14.3   0.0   1   1   0.00022     0.094   12.2   0.0    14    40    30    56    26    86 0.82 AAA domain
FtsK_SpoIIIE         PF01580.13   205 sp|P16679|PHNL_ECOLI -            226     0.034   13.6   0.0   1   1   0.00014      0.06   12.8   0.0    40    61    36    57    10    63 0.81 FtsK/SpoIIIE family
Viral_helicase1      PF01443.13   234 sp|P16679|PHNL_ECOLI -            226      0.04   13.4   0.0   1   1   0.00014     0.061   12.8   0.0     2    21    38    57    37    99 0.81 Viral (Superfamily 1) RNA helicase
DAP3                 PF10236.4    309 sp|P16679|PHNL_ECOLI -            226     0.042   12.7   0.0   1   1   0.00014     0.062   12.2   0.0    22    43    33    54    23    65 0.86 Mitochondrial ribosomal death-associated protein 3
AAA_19               PF13245.1     76 sp|P16679|PHNL_ECOLI -            226     0.054   13.2   0.5   1   1    0.0015      0.64    9.8   0.0    11    36    35    66    26   105 0.66 Part of AAA domain
MobB                 PF03205.9    140 sp|P16679|PHNL_ECOLI -            226     0.054   13.1   0.0   1   1   0.00044      0.19   11.4   0.0     3    24    37    58    35    79 0.74 Molybdopterin guanine dinucleotide synthesis protein B
DUF815               PF05673.8    250 sp|P16679|PHNL_ECOLI -            226     0.054   12.4   0.0   1   1   0.00018     0.078   11.8   0.0    52    81    33    62    22   111 0.79 Protein of unknown function (DUF815)
AAA_10               PF12846.2    304 sp|P16679|PHNL_ECOLI -            226     0.068   12.5   0.0   1   1   0.00027      0.12   11.8   0.0     6    47    39    79    35   161 0.79 AAA-like domain
RNA_helicase         PF00910.17   107 sp|P16679|PHNL_ECOLI -            226     0.071   13.2   0.0   1   1   0.00027      0.12   12.5   0.0     1    23    37    59    37    97 0.81 RNA helicase
IstB_IS21            PF01695.12   178 sp|P16679|PHNL_ECOLI -            226     0.075   12.4   0.0   1   1   0.00091       0.4   10.0   0.0    44    67    31    54    16    77 0.88 IstB-like ATP binding protein
AAA_23               PF13476.1    202 sp|P16679|PHNL_ECOLI -            226      0.09   13.0   0.0   1   1   0.00034      0.15   12.4   0.0    22    39    37    54    28    57 0.89 AAA domain
Septin               PF00735.13   281 sp|P16679|PHNL_ECOLI -            226     0.093   11.7   0.0   1   1    0.0003      0.13   11.2   0.0     7    37    37    66    34    93 0.74 Septin
MMR_HSR1             PF01926.18   116 sp|P16679|PHNL_ECOLI -            226     0.097   12.6   0.0   1   1   0.00034      0.15   12.0   0.0     2    21    37    56    36   169 0.88 50S ribosome-binding GTPase
AAA_18               PF13238.1    129 sp|P16679|PHNL_ECOLI -            226       0.1   12.8   0.0   1   1   0.00038      0.16   12.2   0.0     1    20    37    56    37    81 0.79 AAA domain
NB-ARC               PF00931.17   287 sp|P16679|PHNL_ECOLI -            226      0.11   11.3   0.0   1   1   0.00033      0.14   10.9   0.0    20    40    35    55    23    73 0.87 NB-ARC domain
cobW                 PF02492.14   178 sp|P16679|PHNL_ECOLI -            226      0.12   11.7   0.0   1   1   0.00044      0.19   11.1   0.0     2    22    36    56    35    71 0.85 CobW/HypB/UreG, nucleotide-binding domain
Gtr1_RagA            PF04670.7    232 sp|P16679|PHNL_ECOLI -            226      0.14   11.2   0.0   1   1   0.00047      0.21   10.7   0.0     2    27    37    62    36    69 0.93 Gtr1/RagA G protein conserved region
SIS_2                PF13580.1    138 sp|P16679|PHNL_ECOLI -            226      0.15   11.7   0.3   1   1    0.0016       0.7    9.6   0.1   115   136   184   205   178   206 0.92 SIS domain
G-alpha              PF00503.15   389 sp|P16679|PHNL_ECOLI -            226      0.25    9.9   0.0   1   1   0.00082      0.36    9.4   0.0    61    85    37    61    26    76 0.84 G-protein alpha subunit
AAA_18               PF13238.1    129 sp|P16690|PHNN_ECOLI -            185   2.7e-08   34.2   0.0   1   1   8.3e-11     2e-07   31.3   0.0     1   118     6   138     6   147 0.68 AAA domain
AAA_33               PF13671.1    143 sp|P16690|PHNN_ECOLI -            185   1.7e-07   31.1   0.2   1   1   2.1e-10   5.3e-07   29.6   0.2     1   136     5   150     5   153 0.72 AAA domain
Guanylate_kin        PF00625.16   183 sp|P16690|PHNN_ECOLI -            185   2.2e-05   23.9   0.0   1   1   1.1e-08   2.7e-05   23.6   0.0     2   152     3   149     2   177 0.80 Guanylate kinase
ABC_tran             PF00005.22   137 sp|P16690|PHNN_ECOLI -            185     0.021   15.1   0.0   1   1   1.1e-05     0.026   14.8   0.0    11    67     3    56     1   181 0.85 ABC transporter
DUF258               PF03193.11   161 sp|P16690|PHNN_ECOLI -            185     0.046   12.9   0.0   1   1   2.7e-05     0.068   12.3   0.0    35    61     3    29     1    53 0.85 Protein of unknown function, DUF258
PhoH                 PF02562.11   205 sp|P0A9K1|PHOH_ECOLI -            354     1e-75  253.5   0.0   1   1   7.9e-79   1.3e-75  253.1   0.0     2   204   149   353   148   354 0.98 PhoH-like protein
AAA_30               PF13604.1    196 sp|P0A9K1|PHOH_ECOLI -            354   6.9e-06   25.7   1.5   1   2   0.00017      0.28   10.7   0.0     3    57   153   207   151   217 0.68 AAA domain
AAA_30               PF13604.1    196 sp|P0A9K1|PHOH_ECOLI -            354   6.9e-06   25.7   1.5   2   2   1.7e-05     0.028   14.0   0.0    93   133   268   307   250   347 0.83 AAA domain
AAA_22               PF13401.1    131 sp|P0A9K1|PHOH_ECOLI -            354   0.00013   22.0   0.2   1   1   1.8e-06     0.003   17.7   0.2     2   111   164   291   162   308 0.66 AAA domain
IstB_IS21            PF01695.12   178 sp|P0A9K1|PHOH_ECOLI -            354    0.0043   16.4   0.0   1   1   5.9e-06    0.0097   15.3   0.0    32    72   151   191   138   203 0.85 IstB-like ATP binding protein
Zot                  PF05707.7    193 sp|P0A9K1|PHOH_ECOLI -            354     0.037   13.4   0.0   1   1   5.5e-05     0.091   12.2   0.0     3    92   169   281   167   290 0.71 Zonular occludens toxin (Zot)
AAA_19               PF13245.1     76 sp|P0A9K1|PHOH_ECOLI -            354     0.051   13.3   0.0   1   1   7.5e-05      0.12   12.0   0.0     6    47   162   201   158   212 0.77 Part of AAA domain
DUF2075              PF09848.4    352 sp|P0A9K1|PHOH_ECOLI -            354     0.071   12.0   0.1   1   1   0.00014      0.24   10.3   0.0     1    97   166   282   166   301 0.66 Uncharacterized conserved protein (DUF2075)
DEAD_2               PF06733.10   174 sp|P0A9K1|PHOH_ECOLI -            354     0.092   12.1   0.0   1   1   0.00011      0.18   11.1   0.0   143   168   266   291   244   296 0.82 DEAD_2
Porin_1              PF00267.16   337 sp|P02932|PHOE_ECOLI -            351  7.4e-142  472.5  24.9   1   1  2.3e-145  8.4e-142  472.3  24.9     1   337    27   351    27   351 0.98 Gram-negative porin
Porin_4              PF13609.1    311 sp|P02932|PHOE_ECOLI -            351   9.9e-22   77.8  32.0   1   1   2.7e-25   9.9e-22   77.8  32.0     4   304    10   325     5   334 0.76 Gram-negative porin
OMP_b-brl            PF13505.1    176 sp|P02932|PHOE_ECOLI -            351   3.8e-05   23.7  35.2   1   2   1.3e-05     0.048   13.5   8.2     3   121     9   144     6   164 0.63 Outer membrane protein beta-barrel domain
OMP_b-brl            PF13505.1    176 sp|P02932|PHOE_ECOLI -            351   3.8e-05   23.7  35.2   2   2   7.6e-06     0.028   14.3  20.7    21   176   165   351   148   351 0.60 Outer membrane protein beta-barrel domain
DUF2320              PF10082.4    381 sp|P02932|PHOE_ECOLI -            351   0.00048   18.9   5.2   1   1   5.1e-07    0.0019   17.0   5.2   261   381   231   351    25   351 0.93 Uncharacterized protein conserved in bacteria (DUF2320)
PhoH                 PF02562.11   205 sp|P0A9K3|PHOL_ECOLI -            346   7.9e-97  322.4   0.0   1   1  7.7e-100     1e-96  322.0   0.0     2   205   118   321   117   321 0.99 PhoH-like protein
AAA_30               PF13604.1    196 sp|P0A9K3|PHOL_ECOLI -            346   7.1e-08   32.2   0.0   1   1   2.5e-10   3.4e-07   30.0   0.0     4   133   123   274   121   276 0.85 AAA domain
AAA_19               PF13245.1     76 sp|P0A9K3|PHOL_ECOLI -            346   4.7e-05   23.0   1.0   1   1   1.3e-07   0.00017   21.2   0.1    16    57   141   180   127   184 0.80 Part of AAA domain
IstB_IS21            PF01695.12   178 sp|P0A9K3|PHOL_ECOLI -            346   0.00056   19.3   0.0   1   1   1.2e-06    0.0016   17.8   0.0    53    74   141   162   111   176 0.82 IstB-like ATP binding protein
DEAD                 PF00270.24   169 sp|P0A9K3|PHOL_ECOLI -            346   0.00096   18.6   0.0   1   1   1.2e-06    0.0016   17.9   0.0     1    46   122   178   122   291 0.71 DEAD/DEAH box helicase
AAA_22               PF13401.1    131 sp|P0A9K3|PHOL_ECOLI -            346     0.002   18.2   0.0   1   1     5e-06    0.0067   16.5   0.0     7   109   138   256   132   274 0.73 AAA domain
AAA_25               PF13481.1    194 sp|P0A9K3|PHOL_ECOLI -            346    0.0036   16.7   0.0   1   1   5.5e-06    0.0075   15.6   0.0    15    82   118   189   109   249 0.69 AAA domain
Zot                  PF05707.7    193 sp|P0A9K3|PHOL_ECOLI -            346     0.015   14.8   0.1   1   1   0.00011      0.15   11.4   0.1     2    90   137   246   136   258 0.52 Zonular occludens toxin (Zot)
AAA_16               PF13191.1    185 sp|P0A9K3|PHOL_ECOLI -            346     0.016   15.2   0.0   1   1   2.2e-05      0.03   14.3   0.0    30   102   141   223   133   338 0.83 AAA ATPase domain
KH_1                 PF00013.24    60 sp|P0A9K3|PHOL_ECOLI -            346     0.053   13.1   0.0   1   1   0.00014      0.19   11.3   0.0    16    58    23    61    20    63 0.85 KH domain
PhoU                 PF01895.14    88 sp|P0A9K7|PHOU_ECOLI -            241   2.6e-34  117.4   9.6   1   2   1.6e-20   1.2e-16   60.9   2.2     2    86    26   111    25   113 0.96 PhoU domain
PhoU                 PF01895.14    88 sp|P0A9K7|PHOU_ECOLI -            241   2.6e-34  117.4   9.6   2   2   1.1e-20   8.5e-17   61.3   0.9     1    87   128   212   128   213 0.91 PhoU domain
Mer2                 PF09074.5    190 sp|P0A9K7|PHOU_ECOLI -            241     0.021   14.7   1.9   1   1   3.8e-06     0.028   14.3   1.3    66   142     5    82     2   122 0.82 Mer2
PHP                  PF02811.14   175 sp|P77766|PHPDC_ECOLI -            293   7.4e-33  113.7   0.1   1   1   6.7e-37   9.9e-33  113.3   0.1     1   169    10   233    10   239 0.92 PHP domain
PTE                  PF02126.13   308 sp|P45548|PHP_ECOLI  -            292  7.9e-129  429.0   0.3   1   1  1.2e-132  8.8e-129  428.9   0.3     1   308     1   292     1   292 0.99 Phosphotriesterase family
Bmp                  PF02608.9    306 sp|P45548|PHP_ECOLI  -            292      0.13   10.9   0.0   1   1   2.5e-05      0.18   10.4   0.0   200   273    63   135    45   151 0.80 Basic membrane protein
FAD_binding_7        PF03441.9    277 sp|P00914|PHR_ECOLI  -            472  8.7e-107  356.4   1.1   1   1  1.5e-110  1.1e-106  356.0   1.1     3   276   205   468   203   469 0.96 FAD binding domain of DNA photolyase
DNA_photolyase       PF00875.13   165 sp|P00914|PHR_ECOLI  -            472   4.2e-46  156.7   0.3   1   2   1.8e-49   1.3e-45  155.0   0.2     2   159     5   168     4   174 0.93 DNA photolyase
Phosphorylase        PF00343.15   713 sp|P0AC86|PHSG_ECOLI -            815         0 1233.0   0.3   1   1         0         0 1232.8   0.3     1   713   101   812   101   812 1.00 Carbohydrate phosphorylase
Phosphorylase        PF00343.15   713 sp|P00490|PHSM_ECOLI -            797         0 1154.0   0.9   2   2         0         0 1153.9   0.3     1   712    91   796    91   797 0.99 Carbohydrate phosphorylase
Amidohydro_4         PF13147.1    304 sp|Q46806|PHYDA_ECOLI -            461   7.3e-28   98.3   0.7   1   1     3e-31   8.9e-28   98.0   0.7     1   304    45   392    45   392 0.89 Amidohydrolase
Amidohydro_1         PF01979.15   333 sp|Q46806|PHYDA_ECOLI -            461   2.3e-12   47.2   0.9   1   2   2.6e-08   7.8e-05   22.4   1.8     1   136    50   192    50   279 0.58 Amidohydrolase family
Amidohydro_1         PF01979.15   333 sp|Q46806|PHYDA_ECOLI -            461   2.3e-12   47.2   0.9   2   2   5.2e-08   0.00015   21.4   0.0   284   333   334   395   290   395 0.78 Amidohydrolase family
Amidohydro_5         PF13594.1     68 sp|Q46806|PHYDA_ECOLI -            461     2e-11   43.5   0.6   1   1   3.1e-14   9.1e-11   41.4   0.6     2    68    22    90     3    90 0.76 Amidohydrolase
Amidohydro_3         PF07969.6    404 sp|Q46806|PHYDA_ECOLI -            461   1.5e-06   27.6   0.1   3   3     4e-06     0.012   14.8   0.0   325   404   296   393   161   393 0.77 Amidohydrolase family
DUF3928              PF13065.1     95 sp|Q46806|PHYDA_ECOLI -            461     0.086   13.1   0.1   1   1   5.7e-05      0.17   12.1   0.1    18    82   123   187   113   195 0.89 Protein of unknown function (DUF3928)
PCMT                 PF01135.14   210 sp|P0A7A5|PIMT_ECOLI -            208   2.3e-82  275.6   0.0   1   1   2.4e-85   2.7e-82  275.3   0.0     2   209     5   206     4   207 0.98 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_18      PF12847.2    112 sp|P0A7A5|PIMT_ECOLI -            208   2.9e-08   34.2   0.0   1   1   4.3e-11   4.9e-08   33.5   0.0     2   108    76   169    75   193 0.82 Methyltransferase domain
RrnaAD               PF00398.15   262 sp|P0A7A5|PIMT_ECOLI -            208   5.4e-07   28.8   0.0   1   1   6.3e-10   7.2e-07   28.4   0.0    16   116    61   161    54   182 0.81 Ribosomal RNA adenine dimethylase
Methyltransf_26      PF13659.1    117 sp|P0A7A5|PIMT_ECOLI -            208   7.5e-07   29.1   0.0   1   1   1.1e-09   1.2e-06   28.4   0.0     2    76    77   147    76   188 0.85 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P0A7A5|PIMT_ECOLI -            208   1.4e-06   27.9   0.0   1   1   1.8e-09   2.1e-06   27.4   0.0     3    84    75   157    73   201 0.76 Methyltransferase domain
MTS                  PF05175.9    170 sp|P0A7A5|PIMT_ECOLI -            208    0.0014   18.0   0.0   1   1   1.8e-06     0.002   17.4   0.0    24   104    68   147    64   180 0.89 Methyltransferase small domain
Methyltransf_23      PF13489.1    161 sp|P0A7A5|PIMT_ECOLI -            208     0.003   17.2   0.0   1   1   4.2e-06    0.0048   16.6   0.0    12    85    67   148    58   182 0.68 Methyltransferase domain
NodS                 PF05401.6    201 sp|P0A7A5|PIMT_ECOLI -            208     0.023   14.1   0.0   1   1     3e-05     0.035   13.5   0.0    25   113    61   148    56   151 0.80 Nodulation protein S (NodS)
CMAS                 PF02353.15   273 sp|P0A7A5|PIMT_ECOLI -            208     0.038   13.0   0.0   1   1   5.4e-05     0.061   12.3   0.0    51   132    64   146    57   153 0.85 Mycolic acid cyclopropane synthetase
GCD14                PF08704.5    247 sp|P0A7A5|PIMT_ECOLI -            208     0.061   12.8   0.0   1   1   7.7e-05     0.088   12.2   0.0    29    63    64    98    53   138 0.76 tRNA methyltransferase complex GCD14 subunit
Methyltransf_11      PF08241.7     95 sp|P0A7A5|PIMT_ECOLI -            208     0.072   13.5   0.0   1   1    0.0002      0.23   11.9   0.0     1    66    80   147    80   156 0.84 Methyltransferase domain
Methyltransf_32      PF13679.1    141 sp|P0A7A5|PIMT_ECOLI -            208     0.081   12.6   0.0   1   1   0.00011      0.12   12.0   0.0    18    69    69   119    58   147 0.72 Methyltransferase domain
DREV                 PF05219.7    265 sp|P0A7A5|PIMT_ECOLI -            208      0.13   11.1   0.0   1   1   0.00018      0.21   10.4   0.0    95   138    76   123    62   146 0.77 DREV methyltransferase
Resolvase            PF00239.16   141 sp|P03014|PINE_ECOLI -            184     1e-50  171.2   0.0   1   1   2.9e-54   1.4e-50  170.7   0.0     2   140     3   135     2   136 0.98 Resolvase, N terminal domain
HTH_7                PF02796.10    45 sp|P03014|PINE_ECOLI -            184   3.4e-13   49.2   0.0   1   1   1.5e-16   7.4e-13   48.1   0.0     1    44   138   181   138   182 0.96 Helix-turn-helix domain of resolvase
HTH_23               PF13384.1     50 sp|P03014|PINE_ECOLI -            184      0.12   12.0   0.7   2   2   0.00011      0.53   10.0   0.0     3    36   144   177   142   182 0.90 Homeodomain-like domain
Resolvase            PF00239.16   141 sp|P76611|PINH_ECOLI -             79   4.5e-09   36.2   0.0   1   1   6.4e-13   4.8e-09   36.2   0.0    46    98     4    56     1    70 0.91 Resolvase, N terminal domain
MOZART1              PF12554.3     48 sp|P76611|PINH_ECOLI -             79     0.042   13.3   0.0   1   1   9.9e-06     0.074   12.5   0.0    28    44    41    57    35    59 0.84 Mitotic-spindle organizing gamma-tubulin ring associated
Resolvase            PF00239.16   141 sp|P77170|PINQ_ECOLI -            196     6e-40  136.3   0.7   1   1   4.5e-43   7.5e-40  136.0   0.0     1   140     4   144     4   145 0.92 Resolvase, N terminal domain
HTH_7                PF02796.10    45 sp|P77170|PINQ_ECOLI -            196   1.2e-11   44.2   0.0   1   1   1.7e-14   2.9e-11   43.0   0.0     1    44   147   190   147   191 0.97 Helix-turn-helix domain of resolvase
HTH_28               PF13518.1     52 sp|P77170|PINQ_ECOLI -            196   9.5e-06   25.5   0.0   1   1   1.4e-08   2.3e-05   24.2   0.0     1    37   156   192   156   195 0.92 Helix-turn-helix domain
HTH_38               PF13936.1     44 sp|P77170|PINQ_ECOLI -            196   0.00022   20.6   0.2   2   2   8.4e-07    0.0014   18.1   0.0     5    39   152   186   149   187 0.93 Helix-turn-helix domain
HTH_11               PF08279.7     55 sp|P77170|PINQ_ECOLI -            196    0.0003   20.3   0.3   2   2   2.9e-05     0.048   13.3   0.2    13    39   165   191   155   193 0.83 HTH domain
HTH_23               PF13384.1     50 sp|P77170|PINQ_ECOLI -            196   0.00049   19.6   0.1   1   1   6.3e-07     0.001   18.6   0.1     4    40   154   190   152   193 0.90 Homeodomain-like domain
HTH_29               PF13551.1    112 sp|P77170|PINQ_ECOLI -            196     0.001   19.1   1.0   2   2   2.4e-05      0.04   14.0   0.0     4    37   160   192   158   196 0.89 Winged helix-turn helix
LysM                 PF01476.15    44 sp|P77170|PINQ_ECOLI -            196     0.026   14.3   0.1   1   1   4.8e-05     0.079   12.8   0.0     3    34   164   195   163   196 0.86 LysM domain
Resolvase            PF00239.16   141 sp|P0ADI0|PINR_ECOLI -            196   5.3e-40  136.5   0.5   1   1     5e-43   7.5e-40  136.0   0.0     1   140     4   144     4   145 0.92 Resolvase, N terminal domain
HTH_7                PF02796.10    45 sp|P0ADI0|PINR_ECOLI -            196   2.2e-11   43.4   0.0   1   1   3.7e-14   5.4e-11   42.1   0.0     1    44   147   190   147   191 0.96 Helix-turn-helix domain of resolvase
HTH_28               PF13518.1     52 sp|P0ADI0|PINR_ECOLI -            196   2.9e-05   23.9   0.0   1   1   5.1e-08   7.6e-05   22.6   0.0     2    37   157   192   156   195 0.87 Helix-turn-helix domain
HTH_38               PF13936.1     44 sp|P0ADI0|PINR_ECOLI -            196   0.00015   21.2   0.1   2   2   6.7e-07     0.001   18.6   0.0     5    39   152   186   149   187 0.93 Helix-turn-helix domain
HTH_11               PF08279.7     55 sp|P0ADI0|PINR_ECOLI -            196   0.00033   20.2   0.3   2   2   3.6e-05     0.053   13.1   0.2    13    39   165   191   156   193 0.83 HTH domain
HTH_23               PF13384.1     50 sp|P0ADI0|PINR_ECOLI -            196    0.0014   18.1   0.1   1   1     2e-06     0.003   17.1   0.1     4    40   154   190   152   193 0.88 Homeodomain-like domain
HTH_29               PF13551.1    112 sp|P0ADI0|PINR_ECOLI -            196    0.0028   17.7   0.8   2   2   3.6e-05     0.054   13.6   0.0     4    37   160   192   157   196 0.88 Winged helix-turn helix
LysM                 PF01476.15    44 sp|P0ADI0|PINR_ECOLI -            196     0.026   14.3   0.1   1   1   5.3e-05     0.079   12.8   0.0     3    34   164   195   163   196 0.86 LysM domain
Sigma70_r4           PF04545.11    50 sp|P0ADI0|PINR_ECOLI -            196     0.041   13.1   0.0   1   1   6.7e-05     0.099   11.9   0.0     4    37   151   184   150   190 0.94 Sigma-70, region 4
PHO4                 PF01384.15   326 sp|P0AFJ7|PITA_ECOLI -            499  7.4e-101  337.0  19.8   1   1  2.3e-104  8.6e-101  336.8  19.8     1   326    30   488    30   488 0.92 Phosphate transporter family
Myc_target_1         PF15179.1    197 sp|P0AFJ7|PITA_ECOLI -            499     0.087   12.3   4.8   2   2   0.00014      0.51    9.8   0.0    24    65   158   202   134   213 0.73 Myc target protein 1
PHO4                 PF01384.15   326 sp|P43676|PITB_ECOLI -            499  8.4e-102  340.1  17.1   1   1    2e-105  9.8e-102  339.9  17.1     1   326    30   488    30   488 0.92 Phosphate transporter family
Myc_target_1         PF15179.1    197 sp|P43676|PITB_ECOLI -            499     0.028   14.0   6.2   2   2   9.6e-06     0.048   13.2   0.0    13    68   147   203   134   214 0.80 Myc target protein 1
ATP-grasp_5          PF13549.1    222 sp|P76594|PKA_ECOLI  -            886     4e-75  251.8   0.2   1   1   8.5e-78   9.7e-75  250.5   0.1     1   221   472   693   472   694 0.96 ATP-grasp domain
Succ_CoA_lig         PF13607.1    138 sp|P76594|PKA_ECOLI  -            886   1.1e-46  157.8   0.1   1   1   1.9e-49   2.2e-46  156.9   0.1     1   138   147   280   147   280 0.97 Succinyl-CoA ligase like flavodoxin domain
CoA_binding_2        PF13380.1    116 sp|P76594|PKA_ECOLI  -            886   6.7e-24   84.2   0.0   1   2   8.2e-26   9.4e-23   80.5   0.0     1   114    13   130    13   132 0.96 CoA binding domain
Acetyltransf_1       PF00583.19    83 sp|P76594|PKA_ECOLI  -            886   9.5e-11   41.5   0.0   1   1   3.1e-13   3.6e-10   39.7   0.0     9    82   780   863   775   864 0.81 Acetyltransferase (GNAT) family
Acetyltransf_3       PF13302.1    142 sp|P76594|PKA_ECOLI  -            886   1.1e-09   38.6   0.0   1   1   1.9e-12   2.2e-09   37.6   0.0     1   142   725   864   725   864 0.81 Acetyltransferase (GNAT) domain
Acetyltransf_4       PF13420.1    155 sp|P76594|PKA_ECOLI  -            886   1.1e-06   28.6   0.0   2   2     1e-07   0.00012   22.0   0.0     4   135   731   864   728   871 0.80 Acetyltransferase (GNAT) domain
CoA_binding          PF02629.14    96 sp|P76594|PKA_ECOLI  -            886    0.0031   17.9   0.0   1   1   9.6e-06     0.011   16.2   0.0     3    93    12   100    10   102 0.95 CoA binding domain
Acetyltransf_7       PF13508.1     79 sp|P76594|PKA_ECOLI  -            886    0.0032   17.5   0.0   1   1   7.3e-06    0.0083   16.2   0.0     8    56   787   836   780   860 0.87 Acetyltransferase (GNAT) domain
Acetyltransf_8       PF13523.1    152 sp|P76594|PKA_ECOLI  -            886     0.013   15.3   0.0   1   1   2.8e-05     0.032   14.1   0.0    56   137   775   864   735   870 0.76 Acetyltransferase (GNAT) domain
FR47                 PF08445.5     86 sp|P76594|PKA_ECOLI  -            886     0.034   13.9   0.0   1   1   0.00012      0.14   11.9   0.0    25    80   810   866   805   871 0.84 FR47-like protein
ATP-grasp_4          PF13535.1    184 sp|P76594|PKA_ECOLI  -            886     0.039   13.6   0.0   1   1   0.00015      0.17   11.5   0.0     8    76   486   560   480   580 0.80 ATP-grasp domain
Acetyltransf_CG      PF14542.1     78 sp|P76594|PKA_ECOLI  -            886     0.077   12.8   0.0   1   1   0.00022      0.25   11.2   0.0    29    57   813   841   802   843 0.93 GCN5-related N-acetyl-transferase
CPSase_L_D2          PF02786.12   211 sp|P76594|PKA_ECOLI  -            886      0.12   11.5   0.0   1   1   0.00024      0.27   10.4   0.0     4    44   485   523   482   526 0.86 Carbamoyl-phosphate synthase L chain, ATP binding domain
AA_permease          PF00324.16   478 sp|P0AA47|PLAP_ECOLI -            452   8.7e-39  133.1  37.9   1   1   1.5e-42   1.1e-38  132.8  37.9     2   428    23   418    22   438 0.82 Amino acid permease
AA_permease_2        PF13520.1    426 sp|P0AA47|PLAP_ECOLI -            452   2.4e-35  121.8  36.3   1   1   6.4e-39   4.7e-35  120.9  36.3    34   399    53   411    24   438 0.81 Amino acid permease
Acyltransferase      PF01553.16   132 sp|P0A7A7|PLSB_ECOLI -            807   1.9e-25   88.8   0.0   1   1   2.2e-29   3.3e-25   88.0   0.0     2   131   282   424   281   425 0.95 Acyltransferase
Acyltransferase      PF01553.16   132 sp|P26647|PLSC_ECOLI -            245   3.6e-33  113.8   0.0   1   1     7e-37   5.2e-33  113.2   0.0     3   132    54   180    52   180 0.95 Acyltransferase
Glycos_transf_4      PF00953.16   159 sp|P26647|PLSC_ECOLI -            245     0.088   12.6   0.7   1   1   9.4e-05       0.7    9.6   0.7    53    94   159   200     1   204 0.72 Glycosyl transferase family 4
FA_synthesis         PF02504.10   323 sp|P27247|PLSX_ECOLI -            356  7.8e-128  425.8   0.0   1   1    6e-132  8.9e-128  425.6   0.0     1   323     4   331     4   331 0.99 Fatty acid synthesis protein
G3P_acyltransf       PF02660.10   178 sp|P60782|PLSY_ECOLI -            205   3.7e-57  192.7  10.4   1   1   2.9e-61   4.3e-57  192.5  10.4     1   177    10   184    10   185 0.96 Glycerol-3-phosphate acyltransferase
PmbA_TldD            PF01523.11   293 sp|P0AFK0|PMBA_ECOLI -            450   6.8e-66  222.5   0.0   1   1   7.1e-70     1e-65  221.8   0.0     1   292    34   326    34   327 0.96 Putative modulator of DNA gyrase
PmrD                 PF11183.3     82 sp|P37590|PMRD_ECOLI -             88   1.2e-46  156.3   0.8   1   1   9.1e-51   1.4e-46  156.2   0.8     1    82     1    82     1    82 1.00 Polymyxin resistance protein PmrD
Isochorismatase      PF00857.15   174 sp|P21369|PNCA_ECOLI -            213   1.6e-38  132.4   0.0   1   1   1.2e-42   1.8e-38  132.1   0.0     2   174     5   207     4   207 0.96 Isochorismatase family
NAPRTase             PF04095.11   245 sp|P18133|PNCB_ECOLI -            400   3.5e-79  265.5   0.0   1   1   6.3e-83   4.7e-79  265.1   0.0     1   244   169   394   169   395 0.99 Nicotinate phosphoribosyltransferase (NAPRTase) family
HBS1_N               PF08938.5     79 sp|P18133|PNCB_ECOLI -            400     0.062   13.4   0.5   1   1   2.5e-05      0.18   11.9   0.1    38    63    12    36     6    39 0.82 HBS1 N-terminus
CinA                 PF02464.12   155 sp|P0A6G3|PNCC_ECOLI -            165   1.2e-61  206.7   2.5   1   1   8.8e-66   1.3e-61  206.5   2.5     3   153     8   159     6   161 0.98 Competence-damaged protein
RNase_PH             PF01138.16   132 sp|P05055|PNP_ECOLI  -            711   3.2e-41  140.7   0.0   1   2   1.9e-21   2.8e-18   66.4   0.0     5   132    16   144    13   144 0.89 3' exoribonuclease family, domain 1
RNase_PH             PF01138.16   132 sp|P05055|PNP_ECOLI  -            711   3.2e-41  140.7   0.0   2   2   6.2e-23   9.2e-20   71.3   0.0     2   132   324   456   323   456 0.90 3' exoribonuclease family, domain 1
PNPase               PF03726.9     83 sp|P05055|PNP_ECOLI  -            711   2.6e-26   91.6   2.1   1   1   1.8e-29   2.6e-26   91.6   2.1     2    83   242   320   241   320 0.98 Polyribonucleotide nucleotidyltransferase, RNA binding domain
RNase_PH_C           PF03725.10    68 sp|P05055|PNP_ECOLI  -            711   2.1e-24   85.2   8.2   1   3   2.7e-19     4e-16   58.6   0.1     1    67   147   210   147   211 0.97 3' exoribonuclease family, domain 2
RNase_PH_C           PF03725.10    68 sp|P05055|PNP_ECOLI  -            711   2.1e-24   85.2   8.2   3   3     4e-10     6e-07   29.3   0.8     1    66   459   527   459   529 0.92 3' exoribonuclease family, domain 2
S1                   PF00575.18    74 sp|P05055|PNP_ECOLI  -            711   6.9e-23   80.5   2.7   1   1   4.6e-26   6.9e-23   80.5   2.7     3    74   620   690   618   690 0.97 S1 RNA binding domain
KH_1                 PF00013.24    60 sp|P05055|PNP_ECOLI  -            711   1.2e-12   47.2   6.5   1   1   1.5e-15   2.2e-12   46.4   5.2     2    60   556   612   555   612 0.93 KH domain
KH_3                 PF13014.1     43 sp|P05055|PNP_ECOLI  -            711   3.2e-07   29.8   0.5   1   1   7.5e-10   1.1e-06   28.1   0.5     2    38   565   594   564   603 0.86 KH domain
KH_2                 PF07650.12    78 sp|P05055|PNP_ECOLI  -            711     0.004   16.6   0.5   1   1   2.7e-06     0.004   16.6   0.5    28    68   557   597   546   606 0.86 KH domain
S1_2                 PF13509.1     61 sp|P05055|PNP_ECOLI  -            711    0.0075   16.1   0.3   1   1   1.7e-05     0.025   14.4   0.0     1    37   621   657   621   690 0.76 S1 domain
DUF4172              PF13776.1     82 sp|P05055|PNP_ECOLI  -            711      0.14   12.2   0.5   1   1   0.00052      0.77    9.8   0.1     9    71   229   292   224   295 0.86 Domain of unknown function (DUF4172)
AlaDh_PNT_C          PF01262.16   168 sp|P07001|PNTA_ECOLI -            510   7.3e-57  191.5   1.4   1   1   6.7e-60   1.1e-56  190.9   1.4     2   168   147   311   146   311 0.98 Alanine dehydrogenase/PNT, C-terminal domain
AlaDh_PNT_N          PF05222.10   136 sp|P07001|PNTA_ECOLI -            510   2.2e-52  176.6   0.0   1   1   2.7e-55   4.5e-52  175.6   0.0     1   136     4   137     4   137 0.99 Alanine dehydrogenase/PNT, N-terminal domain
DUF3814              PF12769.2     87 sp|P07001|PNTA_ECOLI -            510   1.7e-37  127.4   7.5   1   1   2.6e-40   4.3e-37  126.1   7.0     3    87   427   509   425   509 0.96 Domain of unknown function (DUF3814)
ADH_zinc_N           PF00107.21   130 sp|P07001|PNTA_ECOLI -            510     4e-05   23.1   0.7   2   2     3e-05     0.049   13.1   0.4     3    38   177   212   175   257 0.78 Zinc-binding dehydrogenase
2-Hacid_dh_C         PF02826.14   178 sp|P07001|PNTA_ECOLI -            510   0.00034   19.8   0.2   1   2   4.6e-05     0.075   12.1   0.0    31    86   160   215   128   218 0.79 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Pyr_redox            PF00070.22    80 sp|P07001|PNTA_ECOLI -            510    0.0087   16.4   0.9   1   1   3.3e-05     0.054   13.9   0.4     1    52   167   218   167   221 0.90 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|P07001|PNTA_ECOLI -            510     0.031   14.1   0.1   1   1   5.5e-05     0.091   12.6   0.1     1    33   167   199   167   280 0.88 Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8        PF13450.1     68 sp|P07001|PNTA_ECOLI -            510      0.23   11.5   1.0   1   1   0.00037      0.61   10.1   0.7     1    30   170   199   170   200 0.92 NAD(P)-binding Rossmann-like domain
PNTB                 PF02233.11   464 sp|P0AB67|PNTB_ECOLI -            462  8.2e-230  763.3  19.7   1   1  1.2e-233  9.2e-230  763.1  19.7     2   464     5   462     4   462 0.98 NAD(P) transhydrogenase beta subunit
TPP_enzyme_M         PF00205.17   137 sp|P0AB67|PNTB_ECOLI -            462     0.044   13.5   1.3   2   2   4.4e-05      0.33   10.7   0.4     2    90   297   392   296   458 0.73 Thiamine pyrophosphate enzyme, central domain
NMN_transporter      PF04973.7    182 sp|P0AFK2|PNUC_ECOLI -            239     2e-46  157.7  27.1   1   1   1.5e-48   2.2e-44  151.0  27.1     1   180    23   227    23   229 0.94 Nicotinamide mononucleotide transporter
ABC_tran             PF00005.22   137 sp|P69874|POTA_ECOLI -            378   1.4e-34  119.3   0.0   1   1   4.4e-37   2.8e-34  118.3   0.0     3   135    35   174    33   176 0.88 ABC transporter
TOBE_2               PF08402.5     75 sp|P69874|POTA_ECOLI -            378   4.7e-09   36.1   0.0   1   1   1.7e-11   1.1e-08   34.9   0.0     1    75   292   372   292   372 0.85 TOBE domain
AAA_21               PF13304.1    303 sp|P69874|POTA_ECOLI -            378   2.1e-08   34.5   0.0   1   2   0.00015     0.098   12.6   0.0     4    23    48    67    45    92 0.75 AAA domain
AAA_21               PF13304.1    303 sp|P69874|POTA_ECOLI -            378   2.1e-08   34.5   0.0   2   2   1.1e-06    0.0007   19.6   0.0   233   298   144   207   115   212 0.92 AAA domain
AAA_22               PF13401.1    131 sp|P69874|POTA_ECOLI -            378   1.8e-05   24.8   1.2   1   1   7.4e-07   0.00048   20.2   1.2     4   125    43   207    40   212 0.67 AAA domain
SMC_N                PF02463.14   220 sp|P69874|POTA_ECOLI -            378   0.00013   21.2   0.4   1   1   3.9e-06    0.0025   17.0   0.4   111   209   122   219    25   228 0.60 RecF/RecN/SMC N terminal domain
AAA_25               PF13481.1    194 sp|P69874|POTA_ECOLI -            378    0.0023   17.3   0.0   1   2   0.00064      0.41   10.0   0.0    31    51    41    61    26    94 0.84 AAA domain
AAA                  PF00004.24   132 sp|P69874|POTA_ECOLI -            378    0.0023   18.1   0.2   1   1   2.6e-05     0.017   15.3   0.2     2    50    47    95    46   228 0.72 ATPase family associated with various cellular activities (AAA)
NB-ARC               PF00931.17   287 sp|P69874|POTA_ECOLI -            378    0.0024   16.7   0.2   1   2   0.00021      0.13   11.0   0.0     7    39    31    63    28    71 0.86 NB-ARC domain
AAA_17               PF13207.1    121 sp|P69874|POTA_ECOLI -            378    0.0087   16.8   0.0   1   1   6.2e-05      0.04   14.7   0.0     6    45    50    87    46   111 0.74 AAA domain
AAA_16               PF13191.1    185 sp|P69874|POTA_ECOLI -            378    0.0089   16.0   0.9   1   1   3.5e-05     0.023   14.7   0.9    23    44    42    63    34   217 0.84 AAA ATPase domain
AAA_28               PF13521.1    163 sp|P69874|POTA_ECOLI -            378     0.012   15.6   0.2   1   2     0.001      0.65    9.9   0.0     4    22    48    66    45    88 0.85 AAA domain
AAA_5                PF07728.9    139 sp|P69874|POTA_ECOLI -            378     0.017   14.8   0.2   1   1   0.00026      0.17   11.6   0.0     3    22    47    66    46    84 0.80 AAA domain (dynein-related subfamily)
AAA_18               PF13238.1    129 sp|P69874|POTA_ECOLI -            378     0.017   15.4   0.1   1   1    0.0002      0.13   12.5   0.0     3    28    48    77    47   104 0.72 AAA domain
ABC_ATPase           PF09818.4    448 sp|P69874|POTA_ECOLI -            378     0.019   13.5   0.0   1   1   0.00024      0.16   10.5   0.0   323   414   148   224   138   241 0.79 Predicted ATPase of the ABC class
DUF258               PF03193.11   161 sp|P69874|POTA_ECOLI -            378      0.02   14.0   0.0   1   1   6.1e-05      0.04   13.1   0.0    23    67    30    75    19    95 0.82 Protein of unknown function, DUF258
Rad17                PF03215.10   519 sp|P69874|POTA_ECOLI -            378     0.021   13.5   0.0   1   1   4.3e-05     0.028   13.1   0.0    46    66    44    64    24   111 0.85 Rad17 cell cycle checkpoint protein
AAA_14               PF13173.1    128 sp|P69874|POTA_ECOLI -            378      0.03   14.2   0.0   1   1   0.00019      0.13   12.2   0.0     2    42    43    81    42   110 0.64 AAA domain
AAA_19               PF13245.1     76 sp|P69874|POTA_ECOLI -            378      0.03   14.0   0.0   1   1   0.00012     0.074   12.8   0.0    13    35    46    67    36    97 0.79 Part of AAA domain
Mg_chelatase         PF01078.16   207 sp|P69874|POTA_ECOLI -            378      0.11   11.6   0.0   1   1   0.00033      0.21   10.7   0.0    19    88    40   109    28   144 0.81 Magnesium chelatase, subunit ChlI
AAA_29               PF13555.1     62 sp|P69874|POTA_ECOLI -            378      0.16   11.5   0.0   1   1   0.00054      0.35   10.4   0.0    19    40    40    60    27    65 0.84 P-loop containing region of AAA domain
BPD_transp_1         PF00528.17   185 sp|P0AFK4|POTB_ECOLI -            275   1.2e-17   64.0  15.8   2   2   8.2e-22   1.2e-17   64.0  15.8     1   183    73   272    73   274 0.84 Binding-protein-dependent transport system inner membrane component
BPD_transp_1         PF00528.17   185 sp|P0AFK6|POTC_ECOLI -            264   5.7e-20   71.5  16.3   2   2   7.7e-24   5.7e-20   71.5  16.3     2   181    75   253    74   257 0.90 Binding-protein-dependent transport system inner membrane component
DUF3341              PF11821.3    173 sp|P0AFK6|POTC_ECOLI -            264     0.039   13.4   3.7   1   1     1e-05     0.077   12.4   3.7    56   116    63   123    50   141 0.85 Protein of unknown function (DUF3341)
SBP_bac_8            PF13416.1    281 sp|P0AFK9|POTD_ECOLI -            348     7e-43  147.3   7.8   1   1   3.2e-46   9.5e-43  146.9   7.8     2   278    42   313    41   317 0.91 Bacterial extracellular solute-binding protein
SBP_bac_6            PF13343.1    242 sp|P0AFK9|POTD_ECOLI -            348   4.2e-41  140.8   3.7   1   1   1.8e-44   5.4e-41  140.5   3.7     4   241    77   323    74   324 0.92 Bacterial extracellular solute-binding protein
SBP_bac_11           PF13531.1    230 sp|P0AFK9|POTD_ECOLI -            348   5.2e-16   58.9   0.0   1   1   2.8e-19   8.2e-16   58.3   0.0    16   222    42   285    37   293 0.82 Bacterial extracellular solute-binding protein
SBP_bac_1            PF01547.20   315 sp|P0AFK9|POTD_ECOLI -            348   1.7e-13   50.9  11.2   1   1   1.1e-16   3.1e-13   50.1  11.2    13   314    41   284    31   285 0.74 Bacterial extracellular solute-binding protein
Lipoprotein_8        PF02030.10   493 sp|P0AFK9|POTD_ECOLI -            348   1.6e-09   36.8   0.1   1   2   2.1e-12   6.2e-09   34.8   0.1    21    98    22   104     1   114 0.76 Hypothetical lipoprotein (MG045 family)
AA_permease_2        PF13520.1    426 sp|P0AAF1|POTE_ECOLI -            439   2.4e-50  171.3  53.8   1   1   5.6e-54   2.8e-50  171.1  53.8     2   415    10   415     9   428 0.91 Amino acid permease
AA_permease          PF00324.16   478 sp|P0AAF1|POTE_ECOLI -            439   3.6e-21   75.0  45.7   1   1   9.3e-25   4.6e-21   74.7  45.7     4   418    16   403    13   423 0.89 Amino acid permease
DUF3714              PF12508.3    200 sp|P0AAF1|POTE_ECOLI -            439      0.15   11.5   0.1   1   1   5.3e-05      0.26   10.7   0.1    94   119   135   161   122   162 0.91 Protein of unknown function (DUF3714)
ABC_tran             PF00005.22   137 sp|P31134|POTG_ECOLI -            377   5.3e-37  127.1   0.0   1   1   1.2e-39   7.9e-37  126.6   0.0     2   136    36   177    35   178 0.89 ABC transporter
TOBE_2               PF08402.5     75 sp|P31134|POTG_ECOLI -            377     4e-19   68.3   0.0   1   1   1.4e-21   9.5e-19   67.1   0.0     1    75   295   375   295   375 0.93 TOBE domain
AAA_21               PF13304.1    303 sp|P31134|POTG_ECOLI -            377   1.6e-09   38.1   0.0   1   2   0.00013     0.086   12.7   0.1     2    22    48    68    47    93 0.85 AAA domain
AAA_21               PF13304.1    303 sp|P31134|POTG_ECOLI -            377   1.6e-09   38.1   0.0   2   2   6.9e-08   4.7e-05   23.5   0.0   208   298   122   209    86   214 0.84 AAA domain
DUF258               PF03193.11   161 sp|P31134|POTG_ECOLI -            377   2.7e-05   23.4   0.0   1   2   8.5e-07   0.00057   19.0   0.0    17    66    26    76    11    80 0.80 Protein of unknown function, DUF258
AAA_22               PF13401.1    131 sp|P31134|POTG_ECOLI -            377   0.00089   19.4   0.3   1   1   1.5e-05    0.0099   16.0   0.3     4   124    45   208    41   239 0.68 AAA domain
AAA_16               PF13191.1    185 sp|P31134|POTG_ECOLI -            377    0.0027   17.7   0.4   1   1     1e-05    0.0071   16.3   0.4    24    46    45    66    32   198 0.81 AAA ATPase domain
SMC_N                PF02463.14   220 sp|P31134|POTG_ECOLI -            377    0.0036   16.5   0.1   2   2   0.00063      0.42    9.7   0.1   133   184   146   193    94   228 0.66 RecF/RecN/SMC N terminal domain
AAA_28               PF13521.1    163 sp|P31134|POTG_ECOLI -            377    0.0068   16.3   0.1   1   1   5.8e-05     0.039   13.8   0.0     2    20    48    66    47    78 0.88 AAA domain
AAA_29               PF13555.1     62 sp|P31134|POTG_ECOLI -            377    0.0072   15.8   0.0   1   1   2.1e-05     0.014   14.9   0.0    17    40    40    62    28    65 0.80 P-loop containing region of AAA domain
AAA_33               PF13671.1    143 sp|P31134|POTG_ECOLI -            377     0.011   15.6   0.2   1   1   0.00013      0.09   12.6   0.2     3    33    49   126    47   236 0.54 AAA domain
ATP-synt_ab          PF00006.20   215 sp|P31134|POTG_ECOLI -            377     0.025   14.0   0.1   1   1     7e-05     0.047   13.1   0.0     3    39    32    69    30   145 0.82 ATP synthase alpha/beta family, nucleotide-binding domain
MMR_HSR1             PF01926.18   116 sp|P31134|POTG_ECOLI -            377     0.031   14.2   0.0   1   2    0.0011      0.74    9.7   0.0     2    21    48    67    47    89 0.87 50S ribosome-binding GTPase
AAA_25               PF13481.1    194 sp|P31134|POTG_ECOLI -            377     0.036   13.4   0.1   1   1   0.00019      0.13   11.6   0.0    30    54    42    66    19    74 0.89 AAA domain
Rad17                PF03215.10   519 sp|P31134|POTG_ECOLI -            377     0.061   11.9   0.0   1   1   0.00014     0.096   11.3   0.0    32    70    32    70    26   103 0.83 Rad17 cell cycle checkpoint protein
NACHT                PF05729.7    166 sp|P31134|POTG_ECOLI -            377     0.071   12.7   0.0   1   1    0.0002      0.14   11.8   0.0     4    21    49    66    46    82 0.92 NACHT domain
AAA_17               PF13207.1    121 sp|P31134|POTG_ECOLI -            377     0.082   13.7   0.0   1   1   0.00042      0.28   11.9   0.0     3    20    49    66    47    96 0.88 AAA domain
Miro                 PF08477.8    119 sp|P31134|POTG_ECOLI -            377     0.085   13.3   0.0   1   1   0.00024      0.16   12.4   0.0     3    25    49    71    48   145 0.90 Miro-like protein
AAA_14               PF13173.1    128 sp|P31134|POTG_ECOLI -            377      0.11   12.3   0.0   1   1   0.00037      0.25   11.2   0.0     2    24    45    67    44   100 0.84 AAA domain
SbcCD_C              PF13558.1     90 sp|P31134|POTG_ECOLI -            377      0.16   11.8   0.0   1   1    0.0013      0.89    9.5   0.0    32    84   149   188   136   191 0.71 Putative exonuclease SbcCD, C subunit
AAA_10               PF12846.2    304 sp|P31134|POTG_ECOLI -            377      0.19   11.1   0.1   1   1   0.00078      0.52    9.6   0.1     4    22    48    66    46    78 0.84 AAA-like domain
AAA_23               PF13476.1    202 sp|P31134|POTG_ECOLI -            377      0.21   11.8   0.0   1   1   0.00045       0.3   11.3   0.0     8    38    27    64    20    67 0.68 AAA domain
BPD_transp_1         PF00528.17   185 sp|P31135|POTH_ECOLI -            317   7.7e-24   84.2  18.8   2   2   5.2e-28   7.7e-24   84.2  18.8     1   183   117   313   113   315 0.91 Binding-protein-dependent transport system inner membrane component
BPD_transp_1         PF00528.17   185 sp|P0AFL1|POTI_ECOLI -            281   2.1e-14   53.4  20.7   2   2   2.8e-18   2.1e-14   53.4  20.7     3   184    81   273    79   274 0.86 Binding-protein-dependent transport system inner membrane component
DUF3938              PF13074.1    102 sp|P0AFL1|POTI_ECOLI -            281     0.038   13.8   0.1   2   2   4.4e-05      0.32   10.8   0.1    28    57   236   265   213   269 0.87 Protein of unknown function (DUF3938)
SBP_bac_8            PF13416.1    281 sp|P31133|POTF_ECOLI -            370     3e-37  128.8   2.3   1   1   1.3e-40   3.9e-37  128.5   2.3     3   280    46   336    44   337 0.86 Bacterial extracellular solute-binding protein
SBP_bac_6            PF13343.1    242 sp|P31133|POTF_ECOLI -            370   1.2e-27   96.7   0.9   1   1   5.7e-31   1.7e-27   96.3   0.9     5   216    80   318    59   349 0.85 Bacterial extracellular solute-binding protein
SBP_bac_1            PF01547.20   315 sp|P31133|POTF_ECOLI -            370   5.4e-17   62.4   6.9   1   1   2.8e-20   8.3e-17   61.8   6.9    17   312    44   303    34   306 0.75 Bacterial extracellular solute-binding protein
SBP_bac_11           PF13531.1    230 sp|P31133|POTF_ECOLI -            370   9.5e-08   31.9   0.0   1   1   1.6e-10   4.6e-07   29.7   0.0    15   226    44   310    32   313 0.79 Bacterial extracellular solute-binding protein
Lipoprotein_8        PF02030.10   493 sp|P31133|POTF_ECOLI -            370   0.00022   19.8   0.1   1   2     6e-05      0.18   10.2   0.0    13    97    17   105     3   119 0.74 Hypothetical lipoprotein (MG045 family)
TPP_enzyme_N         PF02776.13   172 sp|P07003|POXB_ECOLI -            572   4.3e-43  146.7   0.9   1   2   1.6e-45   5.9e-42  143.0   0.1     2   170     4   170     3   172 0.98 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_C         PF02775.16   153 sp|P07003|POXB_ECOLI -            572   2.6e-40  137.4   2.2   1   1     8e-44     3e-40  137.3   0.4     1   153   379   525   379   525 0.96 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
TPP_enzyme_M         PF00205.17   137 sp|P07003|POXB_ECOLI -            572     1e-27   96.5   0.0   1   1   6.4e-31   2.4e-27   95.3   0.0     1   137   191   319   191   319 0.96 Thiamine pyrophosphate enzyme, central domain
DUF137               PF02006.11   178 sp|P07003|POXB_ECOLI -            572     0.084   12.2   0.0   2   2   0.00011      0.39   10.0   0.0   111   168   286   342   277   351 0.84 Protein of unknown function DUF137
His_Phos_2           PF00328.17   347 sp|P07102|PPA_ECOLI  -            432   1.4e-40  139.7   0.0   1   1   1.1e-44   1.7e-40  139.4   0.0     1   344    29   372    29   377 0.84 Histidine phosphatase superfamily (branch 2)
Alk_phosphatase      PF00245.15   421 sp|P00634|PPB_ECOLI  -            471    2e-145  484.7   3.1   1   2  3.1e-138  1.2e-134  449.2   0.9     1   350    64   428    64   431 0.99 Alkaline phosphatase
Alk_phosphatase      PF00245.15   421 sp|P00634|PPB_ECOLI  -            471    2e-145  484.7   3.1   2   2   6.3e-13   2.3e-09   36.4   0.0   381   421   430   470   428   470 0.96 Alkaline phosphatase
Metalloenzyme        PF01676.13   252 sp|P00634|PPB_ECOLI  -            471   1.5e-07   31.0   3.0   3   3   1.1e-09   4.1e-06   26.3   0.7   126   217   322   446   313   466 0.83 Metalloenzyme superfamily
Phosphodiest         PF01663.17   365 sp|P00634|PPB_ECOLI  -            471   2.8e-05   23.6   0.0   1   1   1.2e-08   4.6e-05   22.9   0.0   148   258   296   410   225   448 0.69 Type I phosphodiesterase / nucleotide pyrophosphatase
Sulfatase            PF00884.18   308 sp|P00634|PPB_ECOLI  -            471    0.0028   16.8   1.1   1   1   7.3e-05      0.27   10.3   1.1   221   254   368   398    65   470 0.77 Sulfatase
N_methyl_2           PF13544.1     31 sp|P36647|PPDD_ECOLI -            146   3.5e-09   35.7   0.7   1   1   1.7e-12   6.2e-09   34.9   0.7    11    31     2    22     1    22 0.94 Type IV pilin N-term methylation site GFxxxE
N_methyl             PF07963.7     20 sp|P36647|PPDD_ECOLI -            146   3.6e-07   29.5   3.7   1   1   1.9e-10     7e-07   28.6   3.7     1    20     5    24     5    24 0.96 Prokaryotic N-terminal methylation motif
N_methyl_3           PF13633.1     22 sp|P36647|PPDD_ECOLI -            146   0.00021   20.9   4.9   1   1   1.1e-07    0.0004   20.0   4.9     1    19     7    25     7    28 0.90 Prokaryotic N-terminal methylation site
Pilin                PF00114.14   108 sp|P36647|PPDD_ECOLI -            146   0.00087   19.9   0.2   1   1   3.1e-07    0.0012   19.5   0.2     2    97    36   125    36   137 0.82 Pilin (bacterial filament)
Pro_isomerase        PF00160.16   155 sp|P0AFL3|PPIA_ECOLI -            190   6.3e-48  162.9   0.6   1   1   4.9e-52   7.3e-48  162.6   0.6     4   155    33   188    30   188 0.89 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Pro_isomerase        PF00160.16   155 sp|P23869|PPIB_ECOLI -            164   7.7e-47  159.3   1.6   1   1   5.8e-51   8.6e-47  159.2   1.6     2   155     2   162     1   162 0.88 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Rotamase             PF00639.16    95 sp|P0A9L5|PPIC_ECOLI -             93   1.2e-22   80.4   0.0   1   1     3e-26   1.5e-22   80.1   0.0     1    93     9    89     9    91 0.96 PPIC-type PPIASE domain
Rotamase_3           PF13616.1    117 sp|P0A9L5|PPIC_ECOLI -             93     1e-19   70.9   0.0   1   1   2.2e-23   1.1e-19   70.8   0.0    16   115     5    91     1    93 0.93 PPIC-type PPIASE domain
Rotamase_2           PF13145.1    121 sp|P0A9L5|PPIC_ECOLI -             93   8.2e-06   26.4   0.0   1   1   1.8e-09   9.1e-06   26.3   0.0    27   105     9    89     2    93 0.76 PPIC-type PPIASE domain
PP_kinase_C          PF13090.1    353 sp|P0A7B1|PPK_ECOLI  -            688  2.6e-147  490.0   0.2   1   1  9.1e-151  3.4e-147  489.6   0.2     3   352   333   681   331   682 0.99 Polyphosphate kinase C-terminal domain
PP_kinase            PF02503.12   207 sp|P0A7B1|PPK_ECOLI  -            688   1.2e-49  168.6   0.9   1   1   5.3e-53     2e-49  167.9   0.9     2   204   118   321   117   324 0.95 Polyphosphate kinase middle domain
PP_kinase_N          PF13089.1    109 sp|P0A7B1|PPK_ECOLI  -            688     1e-31  109.2   3.0   1   1   3.2e-35   1.2e-31  109.0   1.5     1   109     6   111     6   111 0.96 Polyphosphate kinase N-terminal domain
PLDc_2               PF13091.1    126 sp|P0A7B1|PPK_ECOLI  -            688   4.9e-13   48.9   0.2   1   2   5.3e-12     2e-08   34.0   0.4    12   123   369   489   354   491 0.85 PLD-like domain
PLDc_2               PF13091.1    126 sp|P0A7B1|PPK_ECOLI  -            688   4.9e-13   48.9   0.2   2   2   3.3e-05      0.12   12.1   0.0    20   114   541   633   519   645 0.72 PLD-like domain
DiS_P_DiS            PF06750.8     92 sp|Q46836|PPPA_ECOLI -            269     1e-36  124.5   0.4   1   1   5.1e-40   1.9e-36  123.7   0.4     2    89    20   119    19   122 0.95 Bacterial Peptidase A24 N-terminal domain
Peptidase_A24        PF01478.13   106 sp|Q46836|PPPA_ECOLI -            269   7.1e-22   77.5  11.8   2   2   1.9e-25   7.1e-22   77.5  11.8     1   105   130   239   130   240 0.96 Type IV leader peptidase family
Ogr_Delta            PF04606.7     47 sp|Q46836|PPPA_ECOLI -            269       1.4    8.6   4.5   1   2   0.00022      0.83    9.3   0.5     1    12    65    76    65    80 0.93 Ogr/Delta-like zinc finger
PPDK_N               PF01326.14   329 sp|P23538|PPSA_ECOLI -            792   1.3e-98  330.1   1.6   1   2  9.4e-101   2.3e-97  325.9   2.3     3   313    20   348    18   361 0.96 Pyruvate phosphate dikinase, PEP/pyruvate binding domain
PEP-utilizers_C      PF02896.13   294 sp|P23538|PPSA_ECOLI -            792     3e-59  200.3   0.0   1   1     2e-62     5e-59  199.5   0.0    16   291   480   789   468   792 0.90 PEP-utilising enzyme, TIM barrel domain
PEP-utilizers        PF00391.18    81 sp|P23538|PPSA_ECOLI -            792     3e-27   93.9   0.4   1   1   3.1e-30   7.7e-27   92.6   0.4     4    81   382   457   379   460 0.90 PEP-utilising enzyme, mobile domain
Polysacc_deac_2      PF04748.8    213 sp|P23538|PPSA_ECOLI -            792     0.006   15.6   0.0   2   2   1.4e-05     0.035   13.1   0.0   115   197   687   767   674   777 0.89 Divergent polysaccharide deacetylase
HpcH_HpaI            PF03328.9    221 sp|P23538|PPSA_ECOLI -            792      0.02   13.7   0.2   3   3   8.4e-05      0.21   10.4   0.0    87   162   642   714   629   766 0.70 HpcH/HpaI aldolase/citrate lyase family
Tautomerase          PF01361.16    60 sp|P31992|PPTA_ECOLI -             77   4.3e-14   51.8   0.0   1   1   1.2e-17     6e-14   51.3   0.0     1    51     2    53     2    55 0.98 Tautomerase enzyme
Tautomerase_2        PF14552.1     82 sp|P31992|PPTA_ECOLI -             77    0.0052   16.7   0.1   1   1   1.3e-06    0.0064   16.4   0.1    32    79     4    52     1    54 0.89 Tautomerase enzyme
DUF1904              PF08921.6    108 sp|P31992|PPTA_ECOLI -             77     0.045   13.7   0.0   1   1   1.3e-05     0.063   13.3   0.0    56   101     2    51     1    54 0.77 Domain of unknown function (DUF1904)
Ppx-GppA             PF02541.11   285 sp|P0AFL6|PPX_ECOLI  -            513  2.3e-105  351.8   0.1   1   2  1.2e-108    6e-105  350.5   0.0     1   284    26   308    26   309 0.99 Ppx/GppA phosphatase family
FtsA                 PF14450.1    120 sp|P0AFL6|PPX_ECOLI  -            513   0.00073   19.3   0.0   2   2   0.00018      0.89    9.4   0.0     2    30   140   168   139   200 0.85 Cell division protein FtsA
HD                   PF01966.17   122 sp|P0AFL6|PPX_ECOLI  -            513     0.005   16.8   0.0   1   1   2.4e-06     0.012   15.6   0.0     6    93   334   417   331   443 0.84 HD domain
PqiA                 PF04403.8    160 sp|P0AFL9|PQIA_ECOLI -            417   6.1e-94  311.9  26.1   1   2   4.8e-41   7.8e-38  129.5   5.8     3   158    49   202    47   204 0.96 Paraquat-inducible protein A
PqiA                 PF04403.8    160 sp|P0AFL9|PQIA_ECOLI -            417   6.1e-94  311.9  26.1   2   2   3.1e-59   5.2e-56  188.6  12.3     1   157   252   410   252   413 0.95 Paraquat-inducible protein A
DZR                  PF12773.2     50 sp|P0AFL9|PQIA_ECOLI -            417   0.00025   20.8   8.8   1   2   1.4e-05     0.023   14.5   1.3     4    40     2    41     1    46 0.86 Double zinc ribbon
DZR                  PF12773.2     50 sp|P0AFL9|PQIA_ECOLI -            417   0.00025   20.8   8.8   2   2   0.00028      0.46   10.3   1.1    13    49   222   241   206   251 0.63 Double zinc ribbon
Mu-like_Com          PF10122.4     51 sp|P0AFL9|PQIA_ECOLI -            417     0.032   13.2   4.5   1   2   0.00014      0.22   10.5   0.4     3    33     9    39     7    54 0.74 Mu-like prophage protein Com
zf-ribbon_3          PF13248.1     26 sp|P0AFL9|PQIA_ECOLI -            417      0.29   10.3  13.3   2   2   0.00031      0.51    9.6   3.7     4    22   223   241   220   244 0.89 zinc-ribbon domain
Zn-ribbon_8          PF09723.5     42 sp|P0AFL9|PQIA_ECOLI -            417      0.68    9.9   8.2   1   2   0.00053      0.87    9.5   0.2     8    36    13    39    12    44 0.86 Zinc ribbon domain
zf-RING_3            PF14369.1     35 sp|P0AFL9|PQIA_ECOLI -            417       1.1    9.3  11.2   1   2   0.00017      0.28   11.2   0.7     5    28    13    37    12    39 0.85 zinc-finger
MCE                  PF02470.15    81 sp|P43671|PQIB_ECOLI -            546   6.2e-32  109.4   0.3   1   3   6.7e-13   8.2e-10   38.5   0.2     2    81    42   133    41   133 0.96 mce related protein
MCE                  PF02470.15    81 sp|P43671|PQIB_ECOLI -            546   6.2e-32  109.4   0.3   2   3   3.7e-08   4.5e-05   23.3   0.0     3    56   158   217   156   247 0.82 mce related protein
MCE                  PF02470.15    81 sp|P43671|PQIB_ECOLI -            546   6.2e-32  109.4   0.3   3   3   1.3e-14   1.7e-11   43.9   0.0     5    80   288   388   284   389 0.88 mce related protein
DASH_Duo1            PF08651.5     78 sp|P43671|PQIB_ECOLI -            546     0.001   18.6   2.1   1   1   1.8e-06    0.0023   17.4   0.8     6    46   424   466   418   469 0.78 DASH complex subunit Duo1
BLOC1_2              PF10046.4     99 sp|P43671|PQIB_ECOLI -            546    0.0029   17.6   2.0   1   1   2.4e-06    0.0029   17.6   2.0     4    96   436   526   433   529 0.90 Biogenesis of lysosome-related organelles complex-1 subunit 2
PilJ                 PF13675.1    112 sp|P43671|PQIB_ECOLI -            546    0.0096   16.2   3.0   1   1   1.6e-05      0.02   15.1   3.0    15    98   437   524   434   537 0.87 Type IV pili methyl-accepting chemotaxis transducer N-term
BAR                  PF03114.13   230 sp|P43671|PQIB_ECOLI -            546     0.011   15.2   1.7   1   1   1.6e-05      0.02   14.4   1.7    31   117   436   521   418   532 0.88 BAR domain
EzrA                 PF06160.7    560 sp|P43671|PQIB_ECOLI -            546     0.012   13.8   3.5   1   1   1.4e-05     0.017   13.3   3.5   380   495   417   533   410   535 0.87 Septation ring formation regulator, EzrA
DUF445               PF04286.7    367 sp|P43671|PQIB_ECOLI -            546     0.027   14.0   0.1   1   1   3.3e-05     0.041   13.4   0.1   106   210   417   525   341   541 0.79 Protein of unknown function (DUF445)
Reo_sigmaC           PF04582.7    326 sp|P43671|PQIB_ECOLI -            546      0.21   10.7   3.2   2   2   0.00027      0.34   10.0   0.9    26   118   410   506   406   530 0.73 Reovirus sigma C capsid protein
OmpH                 PF03938.9    158 sp|P43671|PQIB_ECOLI -            546      0.21   11.4   5.5   1   1   0.00031      0.39   10.6   5.5    45   128   437   525   413   535 0.70 Outer membrane protein (OmpH-like)
Peptidase_M16_C      PF05193.16   184 sp|P31828|PQQL_ECOLI -            931   5.8e-43  146.7   1.1   2   3   2.4e-26   1.7e-22   79.9   0.1     2   182   207   386   206   388 0.86 Peptidase M16 inactive domain
Peptidase_M16_C      PF05193.16   184 sp|P31828|PQQL_ECOLI -            931   5.8e-43  146.7   1.1   3   3   1.3e-20     1e-16   61.1   0.0    15   183   698   862   687   863 0.93 Peptidase M16 inactive domain
Peptidase_M16        PF00675.15   149 sp|P31828|PQQL_ECOLI -            931   7.9e-43  145.7   5.3   1   4   1.5e-45   1.1e-41  142.0   0.0     1   148    46   203    46   204 0.96 Insulinase (Peptidase family M16)
Peptidase_S41        PF03572.13   169 sp|P23865|PRC_ECOLI  -            682   4.3e-52  175.9   0.1   1   1     2e-55   7.4e-52  175.1   0.1     1   168   356   529   356   530 0.94 Peptidase family S41
DUF3340              PF11818.3    143 sp|P23865|PRC_ECOLI  -            682   6.6e-42  142.8   5.6   1   1   1.8e-45   6.6e-42  142.8   5.6     5   142   536   670   533   671 0.98 C-terminal domain of tail specific protease (DUF3340)
PDZ                  PF00595.19    81 sp|P23865|PRC_ECOLI  -            682   3.7e-15   55.8   0.5   1   1     2e-18   7.3e-15   54.9   0.5     5    81   240   320   236   320 0.93 PDZ domain (Also known as DHR or GLGF)
PDZ_2                PF13180.1     82 sp|P23865|PRC_ECOLI  -            682   0.00014   21.6   1.0   1   1     1e-07   0.00038   20.2   1.0     2    76   247   329   246   334 0.75 PDZ domain
DHO_dh               PF01180.16   295 sp|P25889|PREA_ECOLI -            411   4.5e-35  121.0   0.0   1   1   4.5e-38   5.6e-35  120.7   0.0     2   295     6   304     5   304 0.84 Dihydroorotate dehydrogenase
Fer4_21              PF14697.1     59 sp|P25889|PREA_ECOLI -            411   2.7e-18   65.5  11.4   2   2   2.2e-21   2.7e-18   65.5  11.4     2    59   338   395   337   395 0.94 4Fe-4S dicluster domain
Dus                  PF01207.12   310 sp|P25889|PREA_ECOLI -            411   6.4e-08   31.7   0.1   1   1   9.6e-11   1.2e-07   30.9   0.1    43   153    91   198    80   203 0.83 Dihydrouridine synthase (Dus)
Fer4                 PF00037.22    24 sp|P25889|PREA_ECOLI -            411   1.8e-07   30.4  27.8   2   3   2.8e-07   0.00035   20.0   3.3     2    18   338   354   337   357 0.91 4Fe-4S binding domain
Fer4                 PF00037.22    24 sp|P25889|PREA_ECOLI -            411   1.8e-07   30.4  27.8   3   3   1.4e-07   0.00018   20.9   9.5     4    24   374   394   371   394 0.93 4Fe-4S binding domain
Fer4_9               PF13187.1     55 sp|P25889|PREA_ECOLI -            411   3.1e-05   24.1  14.8   1   1   2.5e-08   3.1e-05   24.1  14.8     1    55   343   393   340   393 0.89 4Fe-4S dicluster domain
Fer4_7               PF12838.2     52 sp|P25889|PREA_ECOLI -            411   3.4e-05   24.1  16.9   1   1   2.8e-08   3.4e-05   24.1  16.9     1    52   343   392   343   392 0.91 4Fe-4S dicluster domain
Fer4_6               PF12837.2     24 sp|P25889|PREA_ECOLI -            411    0.0001   22.0  21.1   1   2   1.3e-07   0.00016   21.4   1.1     2    20   337   355   336   362 0.87 4Fe-4S binding domain
Fer4_6               PF12837.2     24 sp|P25889|PREA_ECOLI -            411    0.0001   22.0  21.1   2   2   0.00051      0.63   10.0   7.7     2    24   371   393   370   393 0.91 4Fe-4S binding domain
Fer4_10              PF13237.1     52 sp|P25889|PREA_ECOLI -            411   0.00013   21.6  12.6   2   3   1.1e-07   0.00013   21.6  12.6     2    52   337   389   336   389 0.95 4Fe-4S dicluster domain
Fer4_10              PF13237.1     52 sp|P25889|PREA_ECOLI -            411   0.00013   21.6  12.6   3   3   0.00034      0.43   10.4   5.0     4    21   373   390   370   407 0.74 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|P25889|PREA_ECOLI -            411   0.00085   19.3  16.9   2   2   3.3e-05     0.041   13.9  16.1     2    56   341   391   340   392 0.67 4Fe-4S dicluster domain
Fer4_2               PF12797.2     22 sp|P25889|PREA_ECOLI -            411    0.0032   17.2   2.6   1   2   2.6e-06    0.0032   17.2   2.6     3    20   337   354   336   354 0.92 4Fe-4S binding domain
Fer4_2               PF12797.2     22 sp|P25889|PREA_ECOLI -            411    0.0032   17.2   2.6   2   2   0.00012      0.15   12.0   3.3     7    22   375   390   374   390 0.92 4Fe-4S binding domain
Ligase_CoA           PF00549.14   153 sp|P25889|PREA_ECOLI -            411     0.065   12.8   0.0   1   1   0.00016       0.2   11.2   0.0    82   143    71   134    69   143 0.80 CoA-ligase
Fer4_17              PF13534.1     61 sp|P25889|PREA_ECOLI -            411       1.3    9.4  19.4   2   3   0.00048      0.59   10.5   1.1    41    57   339   355   309   359 0.77 4Fe-4S dicluster domain
Fer4_20              PF14691.1    111 sp|P76440|PRET_ECOLI -            412   1.3e-34  118.1   0.9   1   1   4.2e-37   2.4e-34  117.3   0.9     5   110     7   113     3   114 0.94 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
Pyr_redox_2          PF07992.9    201 sp|P76440|PRET_ECOLI -            412   8.8e-17   61.6   0.0   1   1   2.8e-18   1.6e-15   57.5   0.0     1   199   126   384   126   386 0.79 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox            PF00070.22    80 sp|P76440|PRET_ECOLI -            412   5.7e-14   52.2   1.4   1   2   7.3e-06    0.0042   17.4   0.1     1    35   126   160   126   216 0.80 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox            PF00070.22    80 sp|P76440|PRET_ECOLI -            412   5.7e-14   52.2   1.4   2   2   2.5e-10   1.4e-07   31.7   0.1     2    77   256   329   255   332 0.80 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P76440|PRET_ECOLI -            412   7.9e-12   45.6   1.0   1   3   2.7e-08   1.5e-05   25.1   0.0     1    42   128   168   128   191 0.81 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P76440|PRET_ECOLI -            412   7.9e-12   45.6   1.0   2   3   0.00013     0.072   13.1   0.0   120   200   204   287   181   289 0.65 Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8        PF13450.1     68 sp|P76440|PRET_ECOLI -            412   3.7e-09   36.4   0.0   1   1   1.6e-11   9.3e-09   35.1   0.0     1    37   129   165   129   184 0.92 NAD(P)-binding Rossmann-like domain
DAO                  PF01266.19   358 sp|P76440|PRET_ECOLI -            412   1.9e-07   30.3   1.0   1   2   1.2e-06   0.00069   18.6   0.1     1    43   126   161   126   184 0.85 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|P76440|PRET_ECOLI -            412   1.9e-07   30.3   1.0   2   2   0.00051      0.29    9.9   0.1   156   218   300   358   277   397 0.77 FAD dependent oxidoreductase
HI0933_like          PF03486.9    409 sp|P76440|PRET_ECOLI -            412     1e-06   27.5   0.8   1   2   2.7e-08   1.5e-05   23.6   0.0     2    36   126   160   125   164 0.94 HI0933-like protein
NAD_binding_7        PF13241.1    103 sp|P76440|PRET_ECOLI -            412   6.2e-06   26.4   1.3   1   2   0.00063      0.36   11.1   0.0     9    62   126   185   123   218 0.64 Putative NAD(P)-binding
NAD_binding_7        PF13241.1    103 sp|P76440|PRET_ECOLI -            412   6.2e-06   26.4   1.3   2   2   0.00017     0.095   12.9   0.4     9    56   255   300   253   408 0.69 Putative NAD(P)-binding
Amino_oxidase        PF01593.19   450 sp|P76440|PRET_ECOLI -            412   7.1e-06   25.3   0.0   1   2   1.2e-05    0.0069   15.5   0.0     2    31   135   164   134   167 0.96 Flavin containing amine oxidoreductase
FAD_binding_3        PF01494.14   356 sp|P76440|PRET_ECOLI -            412   2.7e-05   23.4   0.5   1   2   2.2e-07   0.00013   21.1   0.0     3    34   126   157   125   169 0.93 FAD binding domain
AlaDh_PNT_C          PF01262.16   168 sp|P76440|PRET_ECOLI -            412     4e-05   23.2   0.4   1   2     6e-06    0.0034   16.9   0.1     5    52   109   156   105   158 0.91 Alanine dehydrogenase/PNT, C-terminal domain
FAD_binding_2        PF00890.19   417 sp|P76440|PRET_ECOLI -            412   4.4e-05   22.5   0.1   1   1   1.9e-07   0.00011   21.1   0.0     2    33   127   158   126   164 0.92 FAD binding domain
Thi4                 PF01946.12   230 sp|P76440|PRET_ECOLI -            412     5e-05   22.5   0.1   1   1   2.3e-07   0.00013   21.1   0.0    20    59   127   166   121   211 0.89 Thi4 family
Shikimate_DH         PF01488.15   135 sp|P76440|PRET_ECOLI -            412   0.00034   20.7   0.8   2   2   7.5e-05     0.043   13.9   0.1     8    45   248   286   241   293 0.85 Shikimate / quinate 5-dehydrogenase
GIDA                 PF01134.17   392 sp|P76440|PRET_ECOLI -            412   0.00056   18.8   0.1   1   1   4.5e-06    0.0025   16.7   0.0     1    29   126   167   126   216 0.69 Glucose inhibited division protein A
XdhC_C               PF13478.1    136 sp|P76440|PRET_ECOLI -            412    0.0018   18.5   0.1   2   2   0.00023      0.13   12.5   0.0     2    39   257   296   256   354 0.80 XdhC Rossmann domain
NAD_binding_9        PF13454.1    156 sp|P76440|PRET_ECOLI -            412    0.0032   17.2   0.1   1   2   0.00018       0.1   12.3   0.0     1    39   128   161   128   175 0.84 FAD-NAD(P)-binding
FAD_oxidored         PF12831.2    428 sp|P76440|PRET_ECOLI -            412    0.0047   16.0   0.0   1   1   1.3e-05    0.0074   15.4   0.0     2    41   127   166   126   183 0.93 FAD dependent oxidoreductase
3HCDH_N              PF02737.13   180 sp|P76440|PRET_ECOLI -            412     0.053   13.1   0.6   1   1   0.00016     0.093   12.3   0.0     1    32   126   157   126   192 0.92 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
UDPG_MGDP_dh_N       PF03721.9    185 sp|P76440|PRET_ECOLI -            412     0.092   12.1   0.1   1   1   0.00036       0.2   10.9   0.1     2    34   126   158   125   200 0.89 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
DEAD                 PF00270.24   169 sp|P17888|PRIA_ECOLI -            732   2.8e-19   69.2   0.0   1   2   5.3e-22   9.9e-19   67.4   0.0     4   165   203   363   200   367 0.83 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|P17888|PRIA_ECOLI -            732     6e-11   42.0   0.0   2   2   4.7e-11   8.7e-08   31.9   0.0    20    78   519   589   501   589 0.80 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|P17888|PRIA_ECOLI -            732   3.6e-10   39.9   0.0   1   1   5.4e-13     1e-09   38.5   0.0     3   182   198   359   196   361 0.79 Type III restriction enzyme, res subunit
AAA_30               PF13604.1    196 sp|P17888|PRIA_ECOLI -            732    0.0081   15.7   1.0   1   1   6.5e-06     0.012   15.2   0.1     1    84   198   287   198   330 0.65 AAA domain
TrwB_AAD_bind        PF10412.4    386 sp|P17888|PRIA_ECOLI -            732     0.031   12.9   0.0   1   1   4.4e-05     0.081   11.5   0.0    18    49   220   251   210   263 0.91 Type IV secretion-system coupling protein DNA-binding domain
AAA_19               PF13245.1     76 sp|P17888|PRIA_ECOLI -            732     0.031   14.0   0.0   1   1   5.4e-05     0.099   12.4   0.0    10    62   217   269   208   287 0.78 Part of AAA domain
zinc-ribbons_6       PF07191.7     70 sp|P17888|PRIA_ECOLI -            732     0.058   13.1   7.6   1   1   7.5e-05      0.14   11.9   7.6     3    38   444   481   442   484 0.89 zinc-ribbons
SSB                  PF00436.20   104 sp|P07013|PRIB_ECOLI -            104   4.5e-13   48.9   0.0   1   1   3.3e-17   4.9e-13   48.8   0.0     2    96     3    92     2   100 0.89 Single-strand binding protein family
PrmA                 PF06325.8    295 sp|P0A8T1|PRMA_ECOLI -            293  1.3e-105  352.7   0.0   1   1    2e-108  1.5e-105  352.5   0.0     1   294     2   292     2   293 0.99 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_26      PF13659.1    117 sp|P0A8T1|PRMA_ECOLI -            293   2.1e-11   43.8   0.0   1   1   6.4e-14   4.8e-11   42.7   0.0     1    78   159   231   159   253 0.79 Methyltransferase domain
MTS                  PF05175.9    170 sp|P0A8T1|PRMA_ECOLI -            293     3e-11   42.9   0.0   1   1   6.4e-14   4.7e-11   42.3   0.0    17   105   142   230   127   238 0.82 Methyltransferase small domain
Methyltransf_18      PF12847.2    112 sp|P0A8T1|PRMA_ECOLI -            293   3.1e-11   43.8   0.1   1   1   6.8e-14     5e-11   43.1   0.1     2    77   159   230   158   273 0.81 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P0A8T1|PRMA_ECOLI -            293   1.7e-10   40.7   0.0   1   1   3.2e-13   2.4e-10   40.1   0.0     4    80   159   230   156   277 0.79 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|P0A8T1|PRMA_ECOLI -            293   1.7e-07   31.0   0.0   1   1   4.1e-10     3e-07   30.2   0.0    21    85   157   230   138   272 0.74 Methyltransferase domain
UPF0020              PF01170.13   180 sp|P0A8T1|PRMA_ECOLI -            293   9.6e-06   25.2   0.1   1   1   2.2e-08   1.7e-05   24.5   0.1    29   113   159   230   155   231 0.85 Putative RNA methylase family UPF0020
Methyltransf_12      PF08242.7     99 sp|P0A8T1|PRMA_ECOLI -            293   1.2e-05   25.6   0.0   1   1   3.4e-08   2.5e-05   24.6   0.0     2    73   164   230   163   244 0.76 Methyltransferase domain
Cons_hypoth95        PF03602.10   183 sp|P0A8T1|PRMA_ECOLI -            293   2.3e-05   23.8   0.0   1   1   5.7e-08   4.2e-05   23.0   0.0    34    97   150   213   138   232 0.86 Conserved hypothetical protein 95
Methyltransf_11      PF08241.7     95 sp|P0A8T1|PRMA_ECOLI -            293   2.3e-05   24.7   0.0   1   1   5.9e-08   4.4e-05   23.9   0.0     2    65   164   228   163   238 0.76 Methyltransferase domain
N6_N4_Mtase          PF01555.13   231 sp|P0A8T1|PRMA_ECOLI -            293   7.2e-05   22.3   0.0   1   1   1.3e-07   9.8e-05   21.9   0.0   151   229   112   197    83   199 0.69 DNA methylase
Methyltransf_32      PF13679.1    141 sp|P0A8T1|PRMA_ECOLI -            293   0.00054   19.6   0.0   1   1   1.1e-06   0.00082   19.0   0.0    26    83   159   209   144   229 0.83 Methyltransferase domain
PCMT                 PF01135.14   210 sp|P0A8T1|PRMA_ECOLI -            293   0.00077   19.0   0.0   1   1   1.6e-06    0.0012   18.4   0.0    62   124   145   207   134   217 0.83 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Met_10               PF02475.11   200 sp|P0A8T1|PRMA_ECOLI -            293     0.001   18.7   0.0   1   1   2.1e-06    0.0015   18.1   0.0   102   176   159   230   153   240 0.83 Met-10+ like-protein
Methyltransf_25      PF13649.1    101 sp|P0A8T1|PRMA_ECOLI -            293    0.0021   18.4   0.0   1   1   5.3e-06     0.004   17.5   0.0     1    50   162   207   162   241 0.76 Methyltransferase domain
Methyltransf_9       PF08003.6    315 sp|P0A8T1|PRMA_ECOLI -            293    0.0026   16.5   0.0   1   1   5.1e-06    0.0038   15.9   0.0   113   148   156   191   150   228 0.81 Protein of unknown function (DUF1698)
FmrO                 PF07091.6    251 sp|P0A8T1|PRMA_ECOLI -            293    0.0032   16.5   0.0   1   1   7.3e-06    0.0054   15.7   0.0   107   175   160   227   150   232 0.88 Ribosomal RNA methyltransferase (FmrO)
CMAS                 PF02353.15   273 sp|P0A8T1|PRMA_ECOLI -            293    0.0056   15.8   0.0   1   1   1.1e-05    0.0083   15.2   0.0    56   119   153   215   148   230 0.86 Mycolic acid cyclopropane synthetase
Methyltransf_15      PF09445.5    164 sp|P0A8T1|PRMA_ECOLI -            293    0.0087   15.6   0.0   1   1   1.7e-05     0.013   15.0   0.0     2    54   160   213   159   232 0.88 RNA cap guanine-N2 methyltransferase
Ubie_methyltran      PF01209.13   233 sp|P0A8T1|PRMA_ECOLI -            293     0.054   12.5   0.0   1   1   0.00017      0.13   11.3   0.0    45    99   156   209   151   225 0.86 ubiE/COQ5 methyltransferase family
MTS                  PF05175.9    170 sp|P39199|PRMB_ECOLI -            310     2e-20   72.8   0.0   1   1   4.8e-23   3.1e-20   72.2   0.0    31   138   132   260   124   273 0.92 Methyltransferase small domain
Methyltransf_26      PF13659.1    117 sp|P39199|PRMB_ECOLI -            310   6.6e-19   68.0   0.0   1   1   1.7e-21   1.1e-18   67.3   0.0     2   116   134   263   133   264 0.92 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P39199|PRMB_ECOLI -            310   3.4e-16   59.1   0.0   1   1   9.3e-19     6e-16   58.3   0.0     2   118   131   270   130   294 0.80 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P39199|PRMB_ECOLI -            310   6.8e-13   49.1   0.0   1   1   2.1e-15   1.3e-12   48.2   0.0     3   110   134   261   132   263 0.82 Methyltransferase domain
PrmA                 PF06325.8    295 sp|P39199|PRMB_ECOLI -            310   1.9e-08   33.8   0.0   1   1   4.3e-11   2.7e-08   33.2   0.0   159   232   130   207   124   208 0.84 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_25      PF13649.1    101 sp|P39199|PRMB_ECOLI -            310   1.2e-07   31.9   0.0   1   1   3.9e-10   2.5e-07   30.9   0.0     1    73   136   206   136   256 0.90 Methyltransferase domain
UPF0020              PF01170.13   180 sp|P39199|PRMB_ECOLI -            310   1.7e-06   27.7   0.0   1   1   4.6e-09     3e-06   26.9   0.0    30   117   134   211   123   218 0.85 Putative RNA methylase family UPF0020
Methyltransf_15      PF09445.5    164 sp|P39199|PRMB_ECOLI -            310   2.8e-06   27.0   0.0   1   1   6.6e-09   4.2e-06   26.3   0.0     3    80   135   210   133   214 0.92 RNA cap guanine-N2 methyltransferase
Met_10               PF02475.11   200 sp|P39199|PRMB_ECOLI -            310     5e-06   26.2   0.0   1   1   1.3e-08   8.5e-06   25.4   0.0   100   179   131   210   122   222 0.91 Met-10+ like-protein
Methyltransf_12      PF08242.7     99 sp|P39199|PRMB_ECOLI -            310   9.6e-06   26.0   0.0   1   1   2.5e-07   0.00016   22.0   0.0     1    72   137   206   137   218 0.86 Methyltransferase domain
Ubie_methyltran      PF01209.13   233 sp|P39199|PRMB_ECOLI -            310   5.1e-05   22.5   0.0   1   1   1.2e-07     8e-05   21.8   0.0    45    98   130   182   121   196 0.88 ubiE/COQ5 methyltransferase family
Cons_hypoth95        PF03602.10   183 sp|P39199|PRMB_ECOLI -            310   5.8e-05   22.5   0.0   1   1   1.5e-07   9.8e-05   21.8   0.0    42   128   132   214   117   227 0.82 Conserved hypothetical protein 95
Methyltransf_4       PF02390.12   197 sp|P39199|PRMB_ECOLI -            310     0.001   18.1   0.0   1   1   3.1e-06     0.002   17.2   0.0    16    77   129   191   114   204 0.85 Putative methyltransferase
N6_Mtase             PF02384.11   311 sp|P39199|PRMB_ECOLI -            310    0.0019   17.3   0.0   1   1   4.5e-06    0.0029   16.7   0.0    44   139   130   214   115   234 0.79 N-6 DNA Methylase
Methyltransf_11      PF08241.7     95 sp|P39199|PRMB_ECOLI -            310    0.0019   18.6   0.0   1   1   7.9e-06    0.0051   17.2   0.0     1    45   137   182   137   220 0.79 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|P39199|PRMB_ECOLI -            310     0.003   17.3   0.0   1   1   4.7e-05      0.03   14.0   0.0    20   119   130   266   114   303 0.65 Methyltransferase domain
Methyltransf_10      PF05971.7    299 sp|P39199|PRMB_ECOLI -            310     0.031   13.4   0.0   1   1     7e-05     0.045   12.8   0.0   101   198   130   221   107   259 0.74 Protein of unknown function (DUF890)
Methyltransf_24      PF13578.1    106 sp|P39199|PRMB_ECOLI -            310     0.033   15.0   0.0   1   1   0.00038      0.25   12.2   0.0     4    88   142   219   140   231 0.78 Methyltransferase domain
Methyltransf_16      PF10294.4    174 sp|P39199|PRMB_ECOLI -            310     0.036   13.5   0.0   1   1   9.9e-05     0.064   12.7   0.0    44    98   130   183   116   208 0.79 Putative methyltransferase
N6_N4_Mtase          PF01555.13   231 sp|P39199|PRMB_ECOLI -            310     0.042   13.3   0.0   1   1   0.00052      0.33   10.3   0.0     2    62   202   268   201   303 0.84 DNA methylase
DUF938               PF06080.7    204 sp|P39199|PRMB_ECOLI -            310     0.093   12.2   0.0   1   1   0.00023      0.15   11.6   0.0    13    99   116   206   113   214 0.79 Protein of unknown function (DUF938)
Rsm22                PF09243.5    275 sp|P39199|PRMB_ECOLI -            310      0.14   11.1   0.0   1   1   0.00038      0.25   10.3   0.0    34   107   132   204   126   214 0.80 Mitochondrial small ribosomal subunit Rsm22
FmrO                 PF07091.6    251 sp|P39199|PRMB_ECOLI -            310      0.17   10.8   0.1   1   1   0.00043      0.28   10.1   0.1   103   175   130   204   119   206 0.90 Ribosomal RNA methyltransferase (FmrO)
Methyltransf_31      PF13847.1    152 sp|P0ACC1|PRMC_ECOLI -            277     2e-21   76.1   0.0   1   1   4.4e-24   2.8e-21   75.6   0.0     2   117   108   242   107   268 0.85 Methyltransferase domain
MTS                  PF05175.9    170 sp|P0ACC1|PRMC_ECOLI -            277   3.8e-20   71.9   0.0   1   1   1.1e-22     7e-20   71.0   0.0    27   138   106   236    94   251 0.87 Methyltransferase small domain
Methyltransf_18      PF12847.2    112 sp|P0ACC1|PRMC_ECOLI -            277   2.1e-16   60.5   0.1   1   1   7.5e-19   4.8e-16   59.3   0.1     4   110   112   237   109   239 0.73 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P0ACC1|PRMC_ECOLI -            277   5.4e-16   58.6   0.1   1   1   2.1e-18   1.4e-15   57.3   0.1     3   114   112   237   110   240 0.89 Methyltransferase domain
Methyltransf_4       PF02390.12   197 sp|P0ACC1|PRMC_ECOLI -            277   1.2e-08   34.2   0.0   1   1     3e-11     2e-08   33.5   0.0    22    77   112   167    90   183 0.88 Putative methyltransferase
PrmA                 PF06325.8    295 sp|P0ACC1|PRMC_ECOLI -            277   2.5e-06   26.8   0.0   1   1   6.2e-09     4e-06   26.1   0.0   153   232   101   183    94   184 0.78 Ribosomal protein L11 methyltransferase (PrmA)
Cons_hypoth95        PF03602.10   183 sp|P0ACC1|PRMC_ECOLI -            277   3.1e-06   26.7   0.0   1   1   1.1e-08     7e-06   25.5   0.0    42   128   109   190    92   199 0.86 Conserved hypothetical protein 95
PCMT                 PF01135.14   210 sp|P0ACC1|PRMC_ECOLI -            277   7.1e-06   25.6   0.0   1   1   1.6e-08     1e-05   25.1   0.0    53   132    87   167    71   175 0.82 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
UPF0020              PF01170.13   180 sp|P0ACC1|PRMC_ECOLI -            277   7.2e-06   25.6   0.0   1   1   1.8e-08   1.2e-05   25.0   0.0    38   116   117   186   102   195 0.81 Putative RNA methylase family UPF0020
Methyltransf_11      PF08241.7     95 sp|P0ACC1|PRMC_ECOLI -            277   3.7e-05   24.1   0.0   1   1   9.8e-08   6.3e-05   23.3   0.0     1    46   114   163   114   236 0.89 Methyltransferase domain
Methyltransf_16      PF10294.4    174 sp|P0ACC1|PRMC_ECOLI -            277   4.7e-05   22.9   0.0   1   1   1.1e-07   7.3e-05   22.2   0.0    45   111   108   172    96   184 0.84 Putative methyltransferase
Methyltransf_23      PF13489.1    161 sp|P0ACC1|PRMC_ECOLI -            277   5.2e-05   23.0   0.0   1   1   1.5e-07   9.5e-05   22.1   0.0    13    60    99   162    92   237 0.72 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|P0ACC1|PRMC_ECOLI -            277   7.3e-05   23.1   0.0   1   1   5.3e-07   0.00034   21.0   0.0     1    65   114   195   114   234 0.57 Methyltransferase domain
Methyltransf_15      PF09445.5    164 sp|P0ACC1|PRMC_ECOLI -            277   0.00026   20.5   0.0   1   1   6.2e-07    0.0004   19.9   0.0     4    70   113   180   111   194 0.88 RNA cap guanine-N2 methyltransferase
Methyltransf_25      PF13649.1    101 sp|P0ACC1|PRMC_ECOLI -            277   0.00054   20.2   0.0   1   1     3e-06    0.0019   18.5   0.0     1    60   113   170   113   239 0.83 Methyltransferase domain
TehB                 PF03848.9    192 sp|P0ACC1|PRMC_ECOLI -            277   0.00055   19.1   0.0   1   1   1.5e-06   0.00099   18.3   0.0    30   100   109   182    95   187 0.88 Tellurite resistance protein TehB
N6_Mtase             PF02384.11   311 sp|P0ACC1|PRMC_ECOLI -            277    0.0038   16.3   0.0   1   1   7.2e-06    0.0046   16.0   0.0   103   173   152   224    99   252 0.79 N-6 DNA Methylase
Ubie_methyltran      PF01209.13   233 sp|P0ACC1|PRMC_ECOLI -            277      0.01   14.9   0.0   1   1   2.7e-05     0.017   14.2   0.0    46   106   108   167    98   173 0.90 ubiE/COQ5 methyltransferase family
Methyltransf_32      PF13679.1    141 sp|P0ACC1|PRMC_ECOLI -            277     0.012   15.2   0.0   1   1   2.8e-05     0.018   14.7   0.0    13    90    99   167    95   231 0.79 Methyltransferase domain
GidB                 PF02527.10   184 sp|P0ACC1|PRMC_ECOLI -            277     0.013   14.6   0.0   1   1   3.9e-05     0.025   13.6   0.0    50   120   111   181    89   183 0.85 rRNA small subunit methyltransferase G
Met_10               PF02475.11   200 sp|P0ACC1|PRMC_ECOLI -            277     0.023   14.2   0.0   1   1   5.6e-05     0.036   13.6   0.0    96   178   104   185    99   195 0.86 Met-10+ like-protein
DUF938               PF06080.7    204 sp|P0ACC1|PRMC_ECOLI -            277     0.026   14.0   0.0   1   1   8.1e-05     0.052   13.0   0.0    20    78   104   162    92   167 0.84 Protein of unknown function (DUF938)
Methyltransf_2       PF00891.13   242 sp|P0ACC1|PRMC_ECOLI -            277     0.035   13.2   0.0   1   1   0.00013     0.087   12.0   0.0   104   148   112   163   106   176 0.81 O-methyltransferase
Aldedh               PF00171.17   462 sp|P07004|PROA_ECOLI -            417   4.4e-21   74.7   3.6   1   2   2.1e-20   1.5e-16   59.7   1.6    37   298     8   282     2   304 0.80 Aldehyde dehydrogenase family
Aldedh               PF00171.17   462 sp|P07004|PROA_ECOLI -            417   4.4e-21   74.7   3.6   2   2   7.7e-07    0.0057   15.0   0.0   377   437   320   379   318   408 0.79 Aldehyde dehydrogenase family
DUF1487              PF07368.6    215 sp|P07004|PROA_ECOLI -            417     0.051   12.8   0.2   1   1   1.2e-05     0.088   12.0   0.2    12    88   231   305   224   324 0.80 Protein of unknown function (DUF1487)
AA_kinase            PF00696.23   242 sp|P0A7B5|PROB_ECOLI -            367   2.6e-43  148.3   2.2   1   1   6.7e-47   3.3e-43  147.9   2.2     2   241     6   234     5   235 0.93 Amino acid kinase family
PUA                  PF01472.15    74 sp|P0A7B5|PROB_ECOLI -            367   9.4e-23   79.7   0.1   1   1   6.1e-26     3e-22   78.1   0.1     1    74   276   350   276   350 0.98 PUA domain
HAD                  PF12710.2    192 sp|P0A7B5|PROB_ECOLI -            367      0.12   12.5   0.3   1   1   6.7e-05      0.33   11.0   0.3    90   122    28    59     9   253 0.87 haloacid dehalogenase-like hydrolase
Sugar_tr             PF00083.19   451 sp|P0C0L7|PROP_ECOLI -            500   4.9e-71  239.6  26.1   1   1   5.1e-74   6.9e-71  239.1  26.1     3   446    28   448    25   453 0.95 Sugar (and other) transporter
MFS_1                PF07690.11   352 sp|P0C0L7|PROP_ECOLI -            500   7.7e-36  123.5  39.8   1   2   1.1e-28   1.5e-25   89.6  15.6    32   254    64   309    30   311 0.74 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P0C0L7|PROP_ECOLI -            500   7.7e-36  123.5  39.8   2   2   1.2e-13   1.6e-10   40.2  21.1    38   166   301   436   298   467 0.79 Major Facilitator Superfamily
Osmo_CC              PF08946.5     46 sp|P0C0L7|PROP_ECOLI -            500   2.8e-25   88.0   8.8   1   1     4e-28   5.4e-25   87.1   8.8     1    46   454   499   454   499 0.99 Osmosensory transporter coiled coil
MFS_2                PF13347.1    428 sp|P0C0L7|PROP_ECOLI -            500   4.6e-06   25.3  36.4   1   3   0.00049      0.66    8.3   4.4   275   328    81   140    46   194 0.71 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P0C0L7|PROP_ECOLI -            500   4.6e-06   25.3  36.4   2   3   9.6e-08   0.00013   20.5  11.7   138   342   161   378   144   389 0.58 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P0C0L7|PROP_ECOLI -            500   4.6e-06   25.3  36.4   3   3   2.9e-07   0.00039   18.9  16.7     9   200   266   440   259   462 0.73 MFS/sugar transport protein
MFS_3                PF05977.8    524 sp|P0C0L7|PROP_ECOLI -            500    0.0053   14.9  15.7   1   2   0.00017      0.24    9.4   0.2    47   119    63   141    57   150 0.74 Transmembrane secretion effector
MFS_3                PF05977.8    524 sp|P0C0L7|PROP_ECOLI -            500    0.0053   14.9  15.7   2   2   0.00031      0.41    8.6  10.2    32   187   282   437   249   451 0.74 Transmembrane secretion effector
MFS_1_like           PF12832.2     77 sp|P0C0L7|PROP_ECOLI -            500     0.034   13.9   6.9   2   2   3.3e-05     0.045   13.5   0.1    22    73   281   333   277   337 0.84 MFS_1 like family
CM_2                 PF01817.16    81 sp|P0C0L7|PROP_ECOLI -            500     0.068   13.2   0.7   1   1   8.4e-05      0.11   12.5   0.7     2    28   472   498   472   500 0.91 Chorismate mutase type II
PDR_assoc            PF08370.6     65 sp|P0C0L7|PROP_ECOLI -            500     0.069   12.6   0.3   1   1   0.00018      0.25   10.8   0.3    26    57   254   285   247   291 0.87 Plant PDR ABC transporter associated
Prefoldin            PF02996.12   120 sp|P0C0L7|PROP_ECOLI -            500     0.097   12.3   0.6   1   1   0.00012      0.16   11.6   0.6    73   112   454   493   452   498 0.91 Prefoldin subunit
MerR-DNA-bind        PF09278.6     65 sp|P0C0L7|PROP_ECOLI -            500      0.18   12.2   0.7   1   1   0.00029       0.4   11.1   0.7    33    63   455   485   446   494 0.63 MerR, DNA binding
TRI12                PF06609.8    599 sp|P0C0L7|PROP_ECOLI -            500      0.75    7.9  16.8   2   2   3.3e-05     0.044   11.9   9.1    51   203   269   423   248   449 0.66 Fungal trichothecene efflux pump (TRI12)
ProQ                 PF04352.8    115 sp|P45577|PROQ_ECOLI -            232   7.6e-44  148.0   0.2   1   1   6.2e-47   1.8e-43  146.7   0.2     2   114     6   118     5   121 0.98 ProQ/FINO family
S1                   PF00575.18    74 sp|P45577|PROQ_ECOLI -            232     0.014   15.5   0.0   1   1   1.8e-05     0.053   13.6   0.0     8    36   201   229   197   230 0.91 S1 RNA binding domain
TP53IP5              PF15331.1    220 sp|P45577|PROQ_ECOLI -            232      0.68    9.8   7.4   1   1   0.00033      0.98    9.2   7.4    86   176   100   187    82   196 0.71 Cellular tumour antigen p53-inducible 5
ABC_tran             PF00005.22   137 sp|P14175|PROV_ECOLI -            400     1e-34  119.7   0.0   1   1   2.7e-37   1.9e-34  118.9   0.0     2   136    45   192    44   193 0.94 ABC transporter
AAA_21               PF13304.1    303 sp|P14175|PROV_ECOLI -            400   7.4e-08   32.6   0.1   2   2   7.6e-08   5.3e-05   23.3   0.0   220   299   148   225    84   229 0.76 AAA domain
CBS                  PF00571.23    57 sp|P14175|PROV_ECOLI -            400   2.6e-07   30.3   0.0   2   2   6.3e-07   0.00044   19.9   0.0    32    56   369   393   347   394 0.85 CBS domain
AAA_16               PF13191.1    185 sp|P14175|PROV_ECOLI -            400   4.8e-05   23.4   0.6   1   1   1.1e-06   0.00074   19.5   0.6    22    57    52    87    44   233 0.50 AAA ATPase domain
ABC_ATPase           PF09818.4    448 sp|P14175|PROV_ECOLI -            400   0.00021   20.0   0.3   2   2    0.0001     0.073   11.6   0.0   322   379   164   221   155   245 0.82 Predicted ATPase of the ABC class
AAA_22               PF13401.1    131 sp|P14175|PROV_ECOLI -            400    0.0015   18.6   0.6   1   1   2.1e-05     0.015   15.4   0.5     3   122    53   221    51   254 0.63 AAA domain
AAA_30               PF13604.1    196 sp|P14175|PROV_ECOLI -            400    0.0026   17.3   0.2   1   1   3.2e-05     0.023   14.3   0.0    16    50    52    86    45    92 0.82 AAA domain
AAA_29               PF13555.1     62 sp|P14175|PROV_ECOLI -            400    0.0037   16.7   0.0   1   1   1.1e-05    0.0075   15.7   0.0    19    40    51    71    43    85 0.79 P-loop containing region of AAA domain
SMC_N                PF02463.14   220 sp|P14175|PROV_ECOLI -            400    0.0049   16.1   0.7   1   1   0.00017      0.12   11.6   0.7    26   205    56   229    41   243 0.62 RecF/RecN/SMC N terminal domain
DUF258               PF03193.11   161 sp|P14175|PROV_ECOLI -            400    0.0049   16.0   0.3   1   1   2.1e-05     0.015   14.4   0.1    32    57    50    76    26   108 0.78 Protein of unknown function, DUF258
AAA_10               PF12846.2    304 sp|P14175|PROV_ECOLI -            400    0.0085   15.5   2.4   1   2   0.00046      0.32   10.3   0.2     4    26    57    79    54    97 0.78 AAA-like domain
AAA_17               PF13207.1    121 sp|P14175|PROV_ECOLI -            400    0.0086   16.8   0.1   1   1     4e-05     0.028   15.2   0.1     2    22    57    77    56   230 0.88 AAA domain
AAA_18               PF13238.1    129 sp|P14175|PROV_ECOLI -            400      0.01   16.1   0.0   1   1   0.00011     0.077   13.3   0.0     2    31    58    91    58   116 0.79 AAA domain
AAA                  PF00004.24   132 sp|P14175|PROV_ECOLI -            400     0.012   15.7   0.0   1   1   0.00069      0.49   10.5   0.0     3    67    59   191    57   240 0.69 ATPase family associated with various cellular activities (AAA)
BCA_ABC_TP_C         PF12399.3     23 sp|P14175|PROV_ECOLI -            400     0.051   13.2   0.1   1   1   0.00014     0.099   12.3   0.1     6    16   247   257   246   257 0.95 Branched-chain amino acid ATP-binding cassette transporter
AAA_33               PF13671.1    143 sp|P14175|PROV_ECOLI -            400     0.065   13.1   0.1   1   1   0.00027      0.19   11.5   0.1     3    19    58    74    56   158 0.77 AAA domain
Mg_chelatase         PF01078.16   207 sp|P14175|PROV_ECOLI -            400      0.11   11.6   0.0   1   1   0.00043      0.31   10.1   0.0    21    69    53   101    38   130 0.79 Magnesium chelatase, subunit ChlI
DUF87                PF01935.12   229 sp|P14175|PROV_ECOLI -            400      0.12   12.1   0.1   1   1   0.00042       0.3   10.8   0.0    27    57    58    87    55    88 0.75 Domain of unknown function DUF87
SbcCD_C              PF13558.1     90 sp|P14175|PROV_ECOLI -            400      0.12   12.2   0.0   1   1   0.00042       0.3   11.0   0.0    60    81   179   200   163   209 0.74 Putative exonuclease SbcCD, C subunit
APS_kinase           PF01583.15   157 sp|P14175|PROV_ECOLI -            400      0.13   11.9   0.0   1   1   0.00034      0.24   11.0   0.0     3    41    55    92    53   123 0.78 Adenylylsulphate kinase
AAA_19               PF13245.1     76 sp|P14175|PROV_ECOLI -            400      0.13   12.0   0.0   1   1   0.00042       0.3   10.8   0.0     7    37    51    80    46   114 0.80 Part of AAA domain
BPD_transp_1         PF00528.17   185 sp|P14176|PROW_ECOLI -            354   2.7e-26   92.2  16.2   2   2   1.8e-30   2.7e-26   92.2  16.2     1   176   163   324   163   332 0.91 Binding-protein-dependent transport system inner membrane component
AA_permease          PF00324.16   478 sp|P0AAE2|PROY_ECOLI -            457  1.8e-104  349.7  48.2   1   1    3e-108  2.2e-104  349.4  48.2     1   473    15   451    15   455 0.96 Amino acid permease
AA_permease_2        PF13520.1    426 sp|P0AAE2|PROY_ECOLI -            457   1.1e-47  162.6  56.6   1   1   1.6e-51   1.2e-47  162.4  56.6     2   425    12   442    11   445 0.88 Amino acid permease
Metallophos          PF00149.23   200 sp|P55798|PRP1_ECOLI -            218   2.8e-15   56.2   1.5   1   1   6.8e-19   3.4e-15   55.9   1.5     2   171    18   159    17   205 0.86 Calcineurin-like phosphoesterase
Metallophos_2        PF12850.2    156 sp|P55798|PRP1_ECOLI -            218   1.7e-06   27.9   0.1   1   1   5.4e-10   2.7e-06   27.3   0.1     6   138    22   208    18   212 0.66 Calcineurin-like phosphoesterase superfamily domain
FBPase_2             PF06874.6    641 sp|P55798|PRP1_ECOLI -            218     0.015   13.3   0.1   1   1   4.4e-06     0.022   12.8   0.1   188   236    48    95    45    99 0.84 Firmicute fructose-1,6-bisphosphatase
Metallophos          PF00149.23   200 sp|P55799|PRP2_ECOLI -            218   8.8e-15   54.6   3.3   1   1   3.5e-18   2.6e-14   53.0   3.3     2   196    16   187    15   191 0.82 Calcineurin-like phosphoesterase
Metallophos_2        PF12850.2    156 sp|P55799|PRP2_ECOLI -            218   3.5e-07   30.1   0.0   1   1   8.6e-11   6.4e-07   29.3   0.0     3   136    17   206    16   212 0.60 Calcineurin-like phosphoesterase superfamily domain
PEP_mutase           PF13714.1    238 sp|P77541|PRPB_ECOLI -            296   1.3e-53  181.6   4.4   1   1   2.1e-57   1.6e-53  181.4   4.4     1   233    10   250    10   255 0.92 Phosphoenolpyruvate phosphomutase
ICL                  PF00463.16   526 sp|P77541|PRPB_ECOLI -            296   1.3e-16   59.9   1.9   1   1   4.6e-20   3.4e-16   58.5   1.9   150   255    80   183    71   213 0.86 Isocitrate lyase family
Citrate_synt         PF00285.16   356 sp|P31660|PRPC_ECOLI -            389  2.6e-116  388.2   0.0   1   1  2.1e-120  3.2e-116  387.9   0.0     2   356    22   370    22   370 0.98 Citrate synthase
MmgE_PrpD            PF03972.9    445 sp|P77243|PRPD_ECOLI -            483  3.8e-178  592.2   0.0   1   1  2.9e-182  4.3e-178  592.0   0.0     2   445    14   475    13   475 0.98 MmgE/PrpD family
AMP-binding          PF00501.23   417 sp|P77495|PRPE_ECOLI -            628   1.4e-85  287.2   0.0   1   1   2.2e-89   1.6e-85  286.9   0.0     2   416    59   500    58   501 0.86 AMP-binding enzyme
AMP-binding_C        PF13193.1     73 sp|P77495|PRPE_ECOLI -            628     4e-19   69.3   0.1   1   1   1.6e-22   1.2e-18   67.8   0.1     1    73   509   592   509   592 0.93 AMP-binding enzyme C-terminal domain
PS_Dcarbxylase       PF02666.10   202 sp|P0A8K1|PSD_ECOLI  -            322   2.3e-62  209.9   0.0   1   1   3.7e-66   2.8e-62  209.6   0.0     1   198    63   281    63   285 0.93 Phosphatidylserine decarboxylase
Peptidase_C48        PF02902.14   216 sp|P0A8K1|PSD_ECOLI  -            322      0.16   11.5   0.0   1   1   3.3e-05      0.25   10.9   0.0     2    51    32    82    31    85 0.92 Ulp1 protease family, C-terminal catalytic domain
PsiE                 PF06146.7     69 sp|P0A7C8|PSIE_ECOLI -            136     2e-16   59.9   5.7   2   2   1.3e-20     2e-16   59.9   5.7     5    69    62   123    58   123 0.95 Phosphate-starvation-inducible E
PspA_IM30            PF04012.7    221 sp|P0AFM6|PSPA_ECOLI -            222   7.4e-48  162.8  32.6   1   1   4.2e-51   8.9e-48  162.5  32.6     1   220     2   217     2   219 0.97 PspA/IM30 family
AAA_13               PF13166.1    712 sp|P0AFM6|PSPA_ECOLI -            222      0.78    8.1  19.4   1   2   7.2e-06     0.015   13.7  10.5   333   457     6   132     3   143 0.92 AAA domain
Pox_A_type_inc       PF04508.7     23 sp|P0AFM6|PSPA_ECOLI -            222       1.9    8.5   8.1   2   2   0.00031      0.66    9.9   0.3     5    20   117   132   115   134 0.89 Viral A-type inclusion protein repeat
DUF1068              PF06364.7    176 sp|P0AFM6|PSPA_ECOLI -            222       4.7    6.7  10.9   1   3    0.0001      0.22   11.1   1.9   134   169    38    74    26    81 0.88 Protein of unknown function (DUF1068)
TBPIP                PF07106.8    169 sp|P0AFM6|PSPA_ECOLI -            222       6.1    6.3  20.3   2   3   0.00012      0.25   10.8   4.6    64   129    84   149    74   160 0.87 Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
SlyX                 PF04102.7     69 sp|P0AFM6|PSPA_ECOLI -            222       8.6    6.8  20.3   2   4   8.9e-05      0.19   12.1   1.8     4    52    99   147    95   160 0.60 SlyX
PspB                 PF06667.7     75 sp|P0AFM9|PSPB_ECOLI -             74   8.3e-32  108.9   0.4   1   1   5.5e-35   9.1e-32  108.8   0.4     1    74     1    73     1    74 0.97 Phage shock protein B
BatA                 PF07584.6     77 sp|P0AFM9|PSPB_ECOLI -             74    0.0019   18.3   0.9   1   1   1.3e-06    0.0022   18.1   0.9     5    54     7    57     1    64 0.84 Aerotolerance regulator N-terminal
AIP3                 PF03915.8    424 sp|P0AFM9|PSPB_ECOLI -             74     0.022   13.6   0.2   1   1   1.5e-05     0.024   13.5   0.2   242   277    37    72    32    74 0.93 Actin interacting protein 3
CcmH                 PF03918.9    148 sp|P0AFM9|PSPB_ECOLI -             74     0.025   13.5   0.1   1   1   2.4e-05      0.04   12.9   0.1   106   147     7    47     2    48 0.80 Cytochrome C biogenesis protein
YPEB                 PF14620.1    361 sp|P0AFM9|PSPB_ECOLI -             74     0.059   12.3   0.4   1   1     4e-05     0.066   12.2   0.4   109   150    32    73    24    74 0.87 YpeB sporulation
MCD                  PF05292.6    354 sp|P0AFM9|PSPB_ECOLI -             74     0.093   11.4   0.0   1   1     6e-05     0.099   11.3   0.0   233   283    23    73    13    74 0.81 Malonyl-CoA decarboxylase (MCD)
P22_AR_C             PF10548.4     74 sp|P0AFM9|PSPB_ECOLI -             74      0.12   12.2   0.8   1   1    0.0001      0.17   11.7   0.0     6    39    33    66    28    71 0.92 P22AR C-terminal domain
IncA                 PF04156.9    191 sp|P0AFM9|PSPB_ECOLI -             74      0.36   10.4   4.8   1   1   0.00024      0.39   10.2   4.8    82   112    35    65     2    71 0.65 IncA protein
Phageshock_PspD      PF09584.5     66 sp|P0AFV8|PSPD_ECOLI -             73   2.4e-31  107.2   4.5   1   1   1.8e-35   2.7e-31  107.0   4.5     1    64    10    71    10    73 0.98 Phage shock protein PspD (Phageshock_PspD)
PspC                 PF04024.7     61 sp|P0AFN2|PSPC_ECOLI -            119   3.6e-19   67.9   0.5   1   1   1.2e-22   4.6e-19   67.6   0.5     1    60     7    68     7    69 0.92 PspC domain
PSD1                 PF07587.6    266 sp|P0AFN2|PSPC_ECOLI -            119   0.00069   19.1   0.1   1   1   2.4e-07    0.0009   18.7   0.1    39    88    68   116    61   118 0.91 Protein of unknown function (DUF1553)
IncA                 PF04156.9    191 sp|P0AFN2|PSPC_ECOLI -            119     0.073   12.6   0.0   1   1   2.5e-05     0.093   12.3   0.0    36   108    35   102    19   116 0.73 IncA protein
Kinase-PPPase        PF03618.9    255 sp|P0A8A4|PSRP_ECOLI -            277   3.7e-82  275.6   0.0   1   1   2.8e-86   4.2e-82  275.4   0.0     1   255     9   267     9   267 0.97 Kinase/pyrophosphorylase
PLDc_2               PF13091.1    126 sp|P23830|PSS_ECOLI  -            451   1.5e-22   79.6   0.0   1   2   2.5e-08   0.00019   21.2   0.0     1    90    40   152    40   157 0.72 PLD-like domain
PLDc_2               PF13091.1    126 sp|P23830|PSS_ECOLI  -            451   1.5e-22   79.6   0.0   2   2   3.3e-19   2.5e-15   56.3   0.0     4   123   259   406   256   409 0.84 PLD-like domain
PLDc                 PF00614.17    28 sp|P23830|PSS_ECOLI  -            451   1.4e-13   50.1   2.2   1   2   1.2e-07   0.00087   19.0   0.3     3    28   135   159   133   159 0.94 Phospholipase D Active site motif
PLDc                 PF00614.17    28 sp|P23830|PSS_ECOLI  -            451   1.4e-13   50.1   2.2   2   2   2.3e-11   1.7e-07   30.8   0.1     2    28   353   379   352   379 0.94 Phospholipase D Active site motif
BPD_transp_1         PF00528.17   185 sp|P07654|PSTA_ECOLI -            296   1.6e-30  105.9  18.6   2   2   2.2e-34   1.6e-30  105.9  18.6     1   175   101   289    97   293 0.95 Binding-protein-dependent transport system inner membrane component
UPF0233              PF06781.7     87 sp|P07654|PSTA_ECOLI -            296       4.4    6.9   8.5   1   3   6.2e-05      0.46   10.1   0.1    14    55    11    52     2    62 0.78 Uncharacterised protein family (UPF0233)
ABC_tran             PF00005.22   137 sp|P0AAH0|PSTB_ECOLI -            257   9.2e-35  119.9   0.0   1   1   2.5e-37   1.3e-34  119.4   0.0     1   136    26   181    26   182 0.97 ABC transporter
AAA_21               PF13304.1    303 sp|P0AAH0|PSTB_ECOLI -            257   2.6e-14   53.9   0.0   1   2   1.9e-07   9.7e-05   22.4   0.0     1    44    38    84    38    93 0.78 AAA domain
AAA_21               PF13304.1    303 sp|P0AAH0|PSTB_ECOLI -            257   2.6e-14   53.9   0.0   2   2   1.6e-09   8.1e-07   29.2   0.0   219   298   130   211   101   213 0.82 AAA domain
SMC_N                PF02463.14   220 sp|P0AAH0|PSTB_ECOLI -            257   1.7e-07   30.7   0.0   1   1   1.6e-09     8e-07   28.5   0.0    11   206    24   219    13   229 0.71 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P0AAH0|PSTB_ECOLI -            257   3.2e-05   23.3   0.0   1   1   1.2e-07   6.2e-05   22.4   0.0    10    41    21    54    12    69 0.79 P-loop containing region of AAA domain
AAA_23               PF13476.1    202 sp|P0AAH0|PSTB_ECOLI -            257   4.4e-05   23.9   0.7   1   1   1.1e-07   5.5e-05   23.5   0.7     1    39    10    56    10   200 0.83 AAA domain
AAA_22               PF13401.1    131 sp|P0AAH0|PSTB_ECOLI -            257   4.6e-05   23.5   0.0   1   1   2.3e-07   0.00012   22.2   0.0     4    95    36   179    32   214 0.61 AAA domain
DUF258               PF03193.11   161 sp|P0AAH0|PSTB_ECOLI -            257   7.4e-05   21.9   0.0   1   1   2.4e-07   0.00012   21.2   0.0    21    57    21    58     3    85 0.80 Protein of unknown function, DUF258
AAA_16               PF13191.1    185 sp|P0AAH0|PSTB_ECOLI -            257   0.00014   21.8   0.1   1   1   3.7e-06    0.0019   18.2   0.1    25    52    37    75    23   240 0.50 AAA ATPase domain
Rad17                PF03215.10   519 sp|P0AAH0|PSTB_ECOLI -            257    0.0015   17.3   0.0   1   1   4.1e-06    0.0021   16.8   0.0    34    77    25    68    23    90 0.81 Rad17 cell cycle checkpoint protein
PRK                  PF00485.13   194 sp|P0AAH0|PSTB_ECOLI -            257    0.0069   15.9   0.0   1   1   4.3e-05     0.022   14.3   0.0     4    28    41    65    38    92 0.77 Phosphoribulokinase / Uridine kinase family
Arch_ATPase          PF01637.13   234 sp|P0AAH0|PSTB_ECOLI -            257     0.015   15.0   0.0   1   1   9.8e-05      0.05   13.2   0.0     8    44    26    60    23    79 0.82 Archaeal ATPase
AAA_33               PF13671.1    143 sp|P0AAH0|PSTB_ECOLI -            257     0.022   14.6   0.0   1   1   9.1e-05     0.046   13.5   0.0     1    18    38    55    38    94 0.89 AAA domain
MobB                 PF03205.9    140 sp|P0AAH0|PSTB_ECOLI -            257     0.024   14.3   0.3   1   2   0.00095      0.49   10.1   0.0     2    20    38    56    37    61 0.86 Molybdopterin guanine dinucleotide synthesis protein B
AAA_14               PF13173.1    128 sp|P0AAH0|PSTB_ECOLI -            257     0.024   14.5   0.0   1   1   0.00011     0.056   13.3   0.0     2    27    36    61    35   100 0.76 AAA domain
AAA_10               PF12846.2    304 sp|P0AAH0|PSTB_ECOLI -            257     0.025   14.0   0.1   1   1   0.00016     0.083   12.3   0.1     1    21    36    56    36    68 0.84 AAA-like domain
AAA_17               PF13207.1    121 sp|P0AAH0|PSTB_ECOLI -            257     0.037   14.8   0.1   1   1   0.00013     0.069   13.9   0.1     3    22    40    59    38   181 0.81 AAA domain
PhoH                 PF02562.11   205 sp|P0AAH0|PSTB_ECOLI -            257      0.05   12.8   0.0   1   1   0.00051      0.26   10.4   0.0    16    92    33   140    23   232 0.55 PhoH-like protein
AAA_25               PF13481.1    194 sp|P0AAH0|PSTB_ECOLI -            257     0.058   12.7   0.0   1   1   0.00028      0.14   11.5   0.0    30    50    33    53    24    55 0.89 AAA domain
AAA_18               PF13238.1    129 sp|P0AAH0|PSTB_ECOLI -            257      0.06   13.6   0.0   1   1   0.00021      0.11   12.8   0.0     3    23    41    76    40   149 0.77 AAA domain
Adeno_IVa2           PF02456.10   370 sp|P0AAH0|PSTB_ECOLI -            257     0.074   11.6   0.0   1   2   0.00063      0.32    9.5   0.0    77   107    25    56     3    67 0.72 Adenovirus IVa2 protein
RNA_helicase         PF00910.17   107 sp|P0AAH0|PSTB_ECOLI -            257     0.082   13.0   0.0   1   1   0.00039       0.2   11.8   0.0     3    23    41    61    39   106 0.87 RNA helicase
AAA_30               PF13604.1    196 sp|P0AAH0|PSTB_ECOLI -            257     0.094   12.2   0.0   1   1   0.00074      0.38   10.3   0.0    17    43    35    61    28    78 0.87 AAA domain
AAA_5                PF07728.9    139 sp|P0AAH0|PSTB_ECOLI -            257       0.1   12.3   0.0   1   1   0.00049      0.25   11.0   0.0     4    23    41    60    39    74 0.85 AAA domain (dynein-related subfamily)
AAA_24               PF13479.1    213 sp|P0AAH0|PSTB_ECOLI -            257      0.12   11.9   0.0   1   1   0.00064      0.33   10.5   0.0     6    30    39    63    34   111 0.85 AAA domain
NACHT                PF05729.7    166 sp|P0AAH0|PSTB_ECOLI -            257      0.12   12.0   0.0   1   1   0.00072      0.37   10.4   0.0     2    20    38    56    37    61 0.86 NACHT domain
G-alpha              PF00503.15   389 sp|P0AAH0|PSTB_ECOLI -            257      0.12   11.0   0.0   1   1   0.00024      0.12   11.0   0.0    61    83    39    61    26   223 0.88 G-protein alpha subunit
AAA_28               PF13521.1    163 sp|P0AAH0|PSTB_ECOLI -            257      0.13   12.2   0.0   1   1   0.00053      0.27   11.1   0.0     3    20    40    57    38    71 0.87 AAA domain
BPD_transp_1         PF00528.17   185 sp|P0AGH8|PSTC_ECOLI -            319   1.6e-17   63.5  20.4   2   2   2.2e-21   1.6e-17   63.5  20.4     3   175    95   304    89   314 0.87 Binding-protein-dependent transport system inner membrane component
DUF1158              PF06643.6     82 sp|P0AGH8|PSTC_ECOLI -            319      0.03   14.6   2.3   2   2   7.8e-06     0.058   13.7   0.1    21    72   258   312   246   315 0.90 Protein of unknown function (DUF1158)
PBP_like_2           PF12849.2    281 sp|P0AG82|PSTS_ECOLI -            346   9.8e-56  189.2   7.2   1   1   2.7e-59   1.3e-55  188.8   7.2    10   278    27   306     8   308 0.91 PBP superfamily domain
PBP_like             PF12727.2    193 sp|P0AG82|PSTS_ECOLI -            346   1.7e-10   40.1   0.0   1   1   7.8e-14   3.9e-10   39.0   0.0     3   168    47   236    45   302 0.76 PBP superfamily domain
SBP_bac_11           PF13531.1    230 sp|P0AG82|PSTS_ECOLI -            346   0.00046   19.8   0.2   1   1   1.6e-07   0.00081   19.0   0.2     5   170    33   225    29   277 0.65 Bacterial extracellular solute-binding protein
Indigoidine_A        PF04227.7    293 sp|P33025|PSUG_ECOLI -            312    4e-136  452.9   4.5   1   1  6.1e-140  4.5e-136  452.8   4.5     1   293    15   307    15   307 0.99 Indigoidine synthase A like protein
PfkB                 PF00294.19   301 sp|P30235|PSUK_ECOLI -            313   1.3e-59  201.8   0.1   1   1   2.1e-63   1.5e-59  201.5   0.1     2   297     5   295     4   299 0.94 pfkB family carbohydrate kinase
Phos_pyr_kin         PF08543.7    246 sp|P30235|PSUK_ECOLI -            313   5.6e-05   22.4   0.0   1   1   1.8e-08   0.00013   21.2   0.0   117   233   178   288   138   296 0.84 Phosphomethylpyrimidine kinase
Nucleos_tra2_C       PF07662.8    210 sp|P33024|PSUT_ECOLI -            416   3.4e-76  255.3  13.2   3   3   6.9e-80   3.4e-76  255.3  13.2     1   210   201   413   201   413 0.97 Na+ dependent nucleoside transporter C-terminus
Nucleos_tra2_N       PF01773.15    75 sp|P33024|PSUT_ECOLI -            416   6.7e-24   84.0   3.7   1   2   1.3e-27   6.7e-24   84.0   3.7     1    75     8    82     8    82 0.99 Na+ dependent nucleoside transporter N-terminus
Gate                 PF07670.9    109 sp|P33024|PSUT_ECOLI -            416   1.2e-07   31.6  23.6   1   2   1.9e-10   9.4e-07   28.7   6.9     2   100    99   190    98   197 0.91 Nucleoside recognition
PEP-utilizers_C      PF02896.13   294 sp|P08839|PT1_ECOLI  -            575  2.1e-124  414.1   0.2   1   1  7.8e-128  2.9e-124  413.7   0.2     1   293   250   541   250   542 0.99 PEP-utilising enzyme, TIM barrel domain
PEP-utilisers_N      PF05524.8    123 sp|P08839|PT1_ECOLI  -            575   2.1e-31  108.3   5.0   1   1   5.5e-35   2.1e-31  108.3   5.0     2   123     3   127     2   127 0.96 PEP-utilising enzyme, N-terminal
PEP-utilizers        PF00391.18    81 sp|P08839|PT1_ECOLI  -            575   7.5e-25   86.3   0.2   1   1     6e-28   2.2e-24   84.8   0.2     9    80   152   224   147   225 0.93 PEP-utilising enzyme, mobile domain
HpcH_HpaI            PF03328.9    221 sp|P08839|PT1_ECOLI  -            575    0.0015   17.4   0.2   1   1   9.2e-07    0.0034   16.2   0.2    64   155   360   457   358   495 0.85 HpcH/HpaI aldolase/citrate lyase family
PEP-utilizers_C      PF02896.13   294 sp|P37177|PT1P_ECOLI -            748  2.6e-107  358.0   0.0   1   1  1.8e-110  3.8e-107  357.5   0.0     5   293   420   707   416   708 0.98 PEP-utilising enzyme, TIM barrel domain
PEP-utilisers_N      PF05524.8    123 sp|P37177|PT1P_ECOLI -            748   2.2e-25   88.8   1.6   1   1   2.8e-28     6e-25   87.4   1.6     2   123   172   295   171   295 0.96 PEP-utilising enzyme, N-terminal
PEP-utilizers        PF00391.18    81 sp|P37177|PT1P_ECOLI -            748   1.6e-18   66.0   0.1   1   1   1.8e-21   3.8e-18   64.8   0.1     6    81   316   391   311   391 0.94 PEP-utilising enzyme, mobile domain
GAF                  PF01590.21   154 sp|P37177|PT1P_ECOLI -            748   2.2e-17   63.5   0.4   1   1   3.2e-20   6.7e-17   62.0   0.1     2   152    18   152    17   154 0.97 GAF domain
GAF_2                PF13185.1    148 sp|P37177|PT1P_ECOLI -            748   4.4e-14   53.2   0.0   1   1   4.8e-17     1e-13   52.0   0.0     4   147    18   154    15   155 0.82 GAF domain
GAF_3                PF13492.1    129 sp|P37177|PT1P_ECOLI -            748   5.5e-10   39.4   0.1   1   1   6.4e-13   1.3e-09   38.1   0.1     3   125    19   152    17   156 0.78 GAF domain
PTA_PTB              PF01515.14   319 sp|P0A9M8|PTA_ECOLI  -            714  3.9e-128  427.0   0.9   2   2  9.2e-132  4.6e-128  426.7   0.2     2   319   392   707   391   707 0.99 Phosphate acetyl/butaryl transferase
AAA_26               PF13500.1    199 sp|P0A9M8|PTA_ECOLI  -            714   3.3e-44  150.8   0.2   1   1   1.6e-47     8e-44  149.6   0.2     2   198     4   230     3   231 0.88 AAA domain
DRTGG                PF07085.7    105 sp|P0A9M8|PTA_ECOLI  -            714   3.3e-31  106.9   0.0   2   2     3e-34   1.5e-30  104.8   0.0     1   104   234   345   234   346 0.98 DRTGG domain
PEP-utilizers_C      PF02896.13   294 sp|P77439|PTFX1_ECOLI -            831  2.7e-104  348.1   0.0   1   1  1.4e-107    4e-104  347.6   0.0     2   293   360   650   359   651 0.99 PEP-utilising enzyme, TIM barrel domain
PTS_EIIA_2           PF00359.17   144 sp|P77439|PTFX1_ECOLI -            831   7.4e-34  116.5   0.1   1   1   9.6e-37   2.9e-33  114.6   0.0     3   143   687   827   685   828 0.96 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
PEP-utilisers_N      PF05524.8    123 sp|P77439|PTFX1_ECOLI -            831   2.8e-18   65.8   0.3   1   1   9.5e-22   2.8e-18   65.8   0.3     2   123   118   235   117   235 0.92 PEP-utilising enzyme, N-terminal
PEP-utilizers        PF00391.18    81 sp|P77439|PTFX1_ECOLI -            831   9.5e-18   63.5   0.0   1   1   6.7e-21     2e-17   62.5   0.0     8    81   260   334   254   334 0.94 PEP-utilising enzyme, mobile domain
PTS-HPr              PF00381.14    84 sp|P77439|PTFX1_ECOLI -            831   1.5e-16   60.0   0.0   1   1   1.1e-19   3.2e-16   58.9   0.0     1    82     1    84     1    86 0.96 PTS HPr component phosphorylation site
PEP-utilizers_C      PF02896.13   294 sp|P32670|PTFX2_ECOLI -            833  4.4e-111  370.4   0.0   1   1  1.9e-114  5.7e-111  370.0   0.0     2   293   363   653   362   654 0.99 PEP-utilising enzyme, TIM barrel domain
PTS_EIIA_2           PF00359.17   144 sp|P32670|PTFX2_ECOLI -            833   6.5e-33  113.4   0.0   1   1   4.3e-36   1.3e-32  112.5   0.0     2   143   689   829   688   830 0.97 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
PEP-utilizers        PF00391.18    81 sp|P32670|PTFX2_ECOLI -            833   2.1e-19   68.8   0.0   1   1   2.2e-22   6.7e-19   67.2   0.0     7    81   262   337   259   337 0.94 PEP-utilising enzyme, mobile domain
PTS-HPr              PF00381.14    84 sp|P32670|PTFX2_ECOLI -            833   3.3e-17   62.1   0.0   1   1   2.8e-20   8.2e-17   60.8   0.0     5    83     6    86     2    87 0.94 PTS HPr component phosphorylation site
PEP-utilisers_N      PF05524.8    123 sp|P32670|PTFX2_ECOLI -            833     7e-14   51.6   1.1   1   1   3.8e-17   1.1e-13   51.0   0.0     2   123   119   238   118   238 0.87 PEP-utilising enzyme, N-terminal
PTS-HPr              PF00381.14    84 sp|P0AA04|PTHP_ECOLI -             85   1.4e-31  108.2   0.2   1   1   9.9e-36   1.5e-31  108.1   0.2     1    82     1    82     1    84 0.98 PTS HPr component phosphorylation site
Pept_tRNA_hydro      PF01195.14   184 sp|P0A7D1|PTH_ECOLI  -            194   5.7e-64  214.9   0.0   1   1   4.3e-68   6.4e-64  214.8   0.0     1   184     5   189     5   189 0.99 Peptidyl-tRNA hydrolase
Peptidase_M16        PF00675.15   149 sp|P05458|PTRA_ECOLI -            962     3e-38  130.9   0.0   1   1   1.6e-41   8.1e-38  129.5   0.0     2   148    55   191    54   192 0.98 Insulinase (Peptidase family M16)
Peptidase_M16_C      PF05193.16   184 sp|P05458|PTRA_ECOLI -            962   2.4e-37  128.3   0.4   1   3   1.2e-25     6e-22   78.2   0.0     5   182   216   394   214   396 0.88 Peptidase M16 inactive domain
Peptidase_M16_C      PF05193.16   184 sp|P05458|PTRA_ECOLI -            962   2.4e-37  128.3   0.4   3   3   5.3e-16   2.6e-12   46.7   0.0     1   181   681   855   681   858 0.86 Peptidase M16 inactive domain
ALIX_LYPXL_bnd       PF13949.1    296 sp|P05458|PTRA_ECOLI -            962     0.077   11.9   0.2   1   1     3e-05      0.15   11.0   0.2   245   280   615   650   599   653 0.91 ALIX V-shaped domain binding to HIV
Peptidase_S9_N       PF02897.10   414 sp|P24555|PTRB_ECOLI -            686  3.5e-116  388.1   3.0   1   1  1.1e-119  4.2e-116  387.9   3.0     1   413     3   403     3   404 0.96 Prolyl oligopeptidase, N-terminal beta-propeller domain
Peptidase_S9         PF00326.16   213 sp|P24555|PTRB_ECOLI -            686   8.1e-70  234.3   0.1   1   1   3.5e-73   1.3e-69  233.6   0.1     2   210   462   676   461   679 0.97 Prolyl oligopeptidase family
Abhydrolase_6        PF12697.2    228 sp|P24555|PTRB_ECOLI -            686    0.0033   17.3   0.0   1   1   2.3e-06    0.0084   16.0   0.0    46   151   502   611   447   655 0.60 Alpha/beta hydrolase family
PTS-HPr              PF00381.14    84 sp|P0A9N0|PTSO_ECOLI -             90     7e-25   86.7   0.4   1   1   5.5e-29   8.2e-25   86.5   0.4     2    84     3    86     2    86 0.96 PTS HPr component phosphorylation site
GATase_2             PF00310.16   361 sp|P0AG16|PUR1_ECOLI -            505   3.1e-31  108.3   0.7   1   2   1.5e-07   0.00044   19.0   0.1     1    57     2    47     2    54 0.89 Glutamine amidotransferases class-II
GATase_2             PF00310.16   361 sp|P0AG16|PUR1_ECOLI -            505   3.1e-31  108.3   0.7   2   2   1.7e-28   5.2e-25   87.9   0.1   183   360    54   210    49   211 0.91 Glutamine amidotransferases class-II
GATase_6             PF13522.1    133 sp|P0AG16|PUR1_ECOLI -            505   9.7e-18   64.4   0.0   1   1     8e-21   2.4e-17   63.1   0.0     9   132    63   209    52   210 0.80 Glutamine amidotransferase domain
GATase_7             PF13537.1    125 sp|P0AG16|PUR1_ECOLI -            505   4.4e-16   58.7   0.0   1   1   3.1e-19   9.2e-16   57.7   0.0     3   124    74   215    72   216 0.85 Glutamine amidotransferase domain
Pribosyltran         PF00156.22   125 sp|P0AG16|PUR1_ECOLI -            505   3.7e-13   49.2   0.1   1   1   2.3e-16   6.8e-13   48.4   0.1    10   123   276   395   269   397 0.91 Phosphoribosyl transferase domain
GATase_4             PF13230.1    272 sp|P0AG16|PUR1_ECOLI -            505   2.3e-07   29.7   0.0   1   1   1.3e-10   3.9e-07   29.0   0.0    62   167    57   165     1   213 0.71 Glutamine amidotransferases class-II
GARS_A               PF01071.14   194 sp|P15640|PUR2_ECOLI -            429   1.3e-86  289.1   0.1   1   1   1.2e-89   1.7e-86  288.7   0.1     1   194   103   296   103   296 0.99 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
GARS_N               PF02844.10   100 sp|P15640|PUR2_ECOLI -            429   4.3e-38  129.7   0.1   1   1   5.7e-41   8.4e-38  128.8   0.1     1   100     1   102     1   102 0.95 Phosphoribosylglycinamide synthetase, N domain
GARS_C               PF02843.11    93 sp|P15640|PUR2_ECOLI -            429     9e-31  105.9   0.1   1   1   3.8e-33   5.7e-30  103.3   0.0     1    92   330   423   330   424 0.96 Phosphoribosylglycinamide synthetase, C domain
ATP-grasp_4          PF13535.1    184 sp|P15640|PUR2_ECOLI -            429   5.4e-15   55.6   0.0   1   1   7.4e-18   1.1e-14   54.5   0.0     5   180   105   292   103   294 0.79 ATP-grasp domain
ATPgrasp_Ter         PF15632.1    330 sp|P15640|PUR2_ECOLI -            429   1.9e-08   33.4   0.0   1   2   4.5e-10   6.6e-07   28.3   0.0    54   223    52   207    35   213 0.81 ATP-grasp in the biosynthetic pathway with Ter operon
ATP-grasp_3          PF02655.9    161 sp|P15640|PUR2_ECOLI -            429     2e-07   31.0   0.0   1   1   2.2e-10   3.2e-07   30.3   0.0     3   159   104   292   103   294 0.79 ATP-grasp domain
CPSase_L_D2          PF02786.12   211 sp|P15640|PUR2_ECOLI -            429   1.4e-05   24.5   0.0   1   1   2.1e-08   3.1e-05   23.3   0.0     6   138   109   244   104   293 0.67 Carbamoyl-phosphate synthase L chain, ATP binding domain
ATP-grasp            PF02222.17   172 sp|P15640|PUR2_ECOLI -            429     9e-05   21.8   0.0   1   1   9.8e-08   0.00014   21.2   0.0     2    83   113   200   112   222 0.84 ATP-grasp domain
RimK                 PF08443.6    190 sp|P15640|PUR2_ECOLI -            429     0.015   14.8   0.0   1   1   1.6e-05     0.023   14.1   0.0     3   110   104   214   102   232 0.77 RimK-like ATP-grasp domain
ATP-grasp_2          PF08442.5    202 sp|P15640|PUR2_ECOLI -            429     0.036   13.4   0.0   1   1   4.4e-05     0.065   12.6   0.0     8    81   109   177   106   211 0.83 ATP-grasp domain
Formyl_trans_N       PF00551.14   181 sp|P08179|PUR3_ECOLI -            212   1.6e-65  220.0   0.0   1   1   1.3e-69   1.9e-65  219.8   0.0     1   181     1   181     1   181 0.99 Formyl transferase
GATase_5             PF13507.1    259 sp|P15254|PUR4_ECOLI -           1295  1.7e-103  345.0   0.0   1   1  5.6e-107  2.8e-103  344.3   0.0     1   257  1039  1292  1039  1293 0.97 CobB/CobQ-like glutamine amidotransferase domain
AIRS_C               PF02769.17   153 sp|P15254|PUR4_ECOLI -           1295   4.3e-47  159.9   2.6   1   2     4e-26     2e-22   79.8   0.0     2   151   432   589   431   591 0.93 AIR synthase related protein, C-terminal domain
AIRS_C               PF02769.17   153 sp|P15254|PUR4_ECOLI -           1295   4.3e-47  159.9   2.6   2   2   5.7e-26   2.8e-22   79.3   1.2     2   150   822   966   821   969 0.89 AIR synthase related protein, C-terminal domain
AIRS                 PF00586.19    96 sp|P15254|PUR4_ECOLI -           1295   1.1e-27   96.0   3.0   1   2   1.1e-30   5.7e-27   93.8   0.0     1    96   257   389   257   389 0.98 AIR synthase related protein, N-terminal domain
AIRS_C               PF02769.17   153 sp|P08178|PUR5_ECOLI -            345   1.6e-35  122.3   0.0   1   1   3.2e-39   2.4e-35  121.7   0.0     2   148   177   339   176   344 0.96 AIR synthase related protein, C-terminal domain
AIRS                 PF00586.19    96 sp|P08178|PUR5_ECOLI -            345   2.7e-18   65.9   0.1   1   1   6.2e-22   4.6e-18   65.2   0.1     4    96    46   142    20   142 0.91 AIR synthase related protein, N-terminal domain
SAICAR_synt          PF01259.13   249 sp|P0A7D7|PUR7_ECOLI -            237   3.5e-75  252.3   0.0   1   1   5.3e-79   3.9e-75  252.1   0.0     2   247     4   234     3   236 0.98 SAICAR synthetase
Peptidase_M42        PF05343.9    292 sp|P0A7D7|PUR7_ECOLI -            237      0.09   11.5   0.0   1   1   1.8e-05      0.13   10.9   0.0   205   258    33    83    25    95 0.80 M42 glutamyl aminopeptidase
Lyase_1              PF00206.15   312 sp|P0AB89|PUR8_ECOLI -            456   6.5e-85  285.0   0.0   1   1   1.1e-88   8.5e-85  284.6   0.0     1   305    14   312    14   320 0.97 Lyase
ASL_C                PF08328.6    115 sp|P0AB89|PUR8_ECOLI -            456   6.6e-55  183.8   0.0   1   1     2e-58   1.5e-54  182.7   0.0     1   115   331   445   331   445 1.00 Adenylosuccinate lyase C-terminal
AICARFT_IMPCHas      PF01808.13   315 sp|P15639|PUR9_ECOLI -            529  1.2e-146  487.7   4.5   1   1  4.2e-150  1.6e-146  487.4   4.5     1   315   137   461   137   461 0.99 AICARFT/IMPCHase bienzyme
MGS                  PF02142.17    95 sp|P15639|PUR9_ECOLI -            529   4.3e-32  109.8   0.0   1   1   2.7e-35   9.9e-32  108.7   0.0     1    95    19   132    19   132 0.99 MGS-like domain
NSP2_assoc           PF14758.1    203 sp|P15639|PUR9_ECOLI -            529      0.11   12.6   0.0   1   1   6.9e-05      0.26   11.4   0.0    93   144   246   299   232   306 0.85 Non-essential region of nsp2 of arterivirus polyprotein
Adenylsucc_synt      PF00709.16   421 sp|P0A7D4|PURA_ECOLI -            432  4.8e-177  588.8   0.0   1   1  3.7e-181  5.5e-177  588.6   0.0     2   420     5   424     4   425 0.99 Adenylosuccinate synthetase
AIRC                 PF00731.15   150 sp|P0AG18|PURE_ECOLI -            169   3.4e-66  221.1   1.9   1   1   5.2e-70   3.8e-66  220.9   1.9     2   150     9   159     8   159 0.99 AIR carboxylase
RraB                 PF06877.6    104 sp|P0AG18|PURE_ECOLI -            169     0.062   13.9   0.0   1   1   1.6e-05      0.12   13.0   0.0    20    53    33    66    31    70 0.92 Regulator of ribonuclease activity B
ATP-grasp            PF02222.17   172 sp|P09029|PURK_ECOLI -            355   1.4e-56  190.5   0.0   1   1   2.3e-60   1.7e-56  190.2   0.0     2   171    88   253    86   254 0.97 ATP-grasp domain
ATP-grasp_4          PF13535.1    184 sp|P09029|PURK_ECOLI -            355   8.6e-10   38.6   0.0   1   1   2.4e-13   1.8e-09   37.6   0.0     4   179    79   243    76   248 0.84 ATP-grasp domain
ATP-grasp            PF02222.17   172 sp|P33221|PURT_ECOLI -            392   3.2e-56  189.3   0.0   1   1   3.1e-59     5e-56  188.7   0.0     2   171   123   294   122   295 0.98 ATP-grasp domain
ATP-grasp_4          PF13535.1    184 sp|P33221|PURT_ECOLI -            392   5.5e-19   68.6   0.0   1   1   6.8e-22   1.1e-18   67.6   0.0    10   179   120   284   110   289 0.86 ATP-grasp domain
Dala_Dala_lig_C      PF07478.8    203 sp|P33221|PURT_ECOLI -            392   6.4e-08   32.2   0.0   1   2   4.2e-10     7e-07   28.8   0.0    23   175   139   284   113   295 0.76 D-ala D-ala ligase C-terminus
ATP-grasp_3          PF02655.9    161 sp|P33221|PURT_ECOLI -            392   4.8e-07   29.7   0.0   1   1   9.5e-10   1.6e-06   28.1   0.0     9   159   118   285   113   287 0.82 ATP-grasp domain
CPSase_L_D2          PF02786.12   211 sp|P33221|PURT_ECOLI -            392   8.9e-07   28.4   0.0   1   1   9.1e-10   1.5e-06   27.6   0.0    15    89   126   198   114   218 0.82 Carbamoyl-phosphate synthase L chain, ATP binding domain
CPSase_L_chain       PF00289.17   110 sp|P33221|PURT_ECOLI -            392   3.3e-05   23.9   0.7   1   1   9.6e-08   0.00016   21.7   0.2     3    99    13    98    11   107 0.84 Carbamoyl-phosphate synthase L chain, N-terminal domain
2-Hacid_dh_C         PF02826.14   178 sp|P33221|PURT_ECOLI -            392   0.00066   18.8   0.0   1   1   7.2e-07    0.0012   18.0   0.0    36    73    12    49     5    67 0.83 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
RimK                 PF08443.6    190 sp|P33221|PURT_ECOLI -            392   0.00096   18.6   0.0   1   1     3e-06     0.005   16.3   0.0    16   174   127   289   113   304 0.74 RimK-like ATP-grasp domain
Epimerase            PF01370.16   236 sp|P33221|PURT_ECOLI -            392      0.11   11.9   0.0   1   1   0.00011      0.18   11.2   0.0     6    71    19    81    15    95 0.81 NAD dependent epimerase/dehydratase family
Formyl_trans_N       PF00551.14   181 sp|P37051|PURU_ECOLI -            280   2.6e-55  186.8   0.0   1   1   6.4e-59   3.2e-55  186.4   0.0     2   181    86   262    85   262 0.99 Formyl transferase
ACT                  PF01842.20    66 sp|P37051|PURU_ECOLI -            280   1.2e-07   31.0   0.0   1   1   4.9e-11   2.4e-07   30.0   0.0     2    63     8    69     7    72 0.91 ACT domain
ACT_6                PF13740.1     76 sp|P37051|PURU_ECOLI -            280      0.13   12.0   0.0   1   1   6.5e-05      0.32   10.7   0.0     6    32    10    36     7    75 0.80 ACT domain
Pro_dh               PF01619.13   313 sp|P09546|PUTA_ECOLI -           1320  1.8e-120  401.6   0.0   1   1    9e-124  2.7e-120  401.0   0.0     1   312   260   573   260   574 0.99 Proline dehydrogenase
Aldedh               PF00171.17   462 sp|P09546|PUTA_ECOLI -           1320  5.5e-111  371.1   0.3   1   1  3.2e-114  9.4e-111  370.3   0.3     7   450   659  1103   654  1111 0.94 Aldehyde dehydrogenase family
Pro_dh-DNA_bdg       PF14850.1    114 sp|P09546|PUTA_ECOLI -           1320   3.8e-52  175.3   0.0   1   1   3.4e-55     1e-51  173.9   0.0     1   114   146   259   146   259 0.99 DNA-binding domain of Proline dehydrogenase
DUF169               PF02596.10   217 sp|P09546|PUTA_ECOLI -           1320      0.13   11.5   0.0   1   1   0.00011      0.33   10.2   0.0   101   157  1225  1279  1214  1288 0.79 Uncharacterised ArCR, COG2043
Aldedh               PF00171.17   462 sp|P23883|PUUC_ECOLI -            495  3.8e-170  566.2   0.0   1   1  5.7e-174  4.3e-170  566.0   0.0     5   462    32   489    28   489 0.97 Aldehyde dehydrogenase family
LuxC                 PF05893.9    400 sp|P23883|PUUC_ECOLI -            495    0.0002   20.2   0.0   1   1   4.5e-08   0.00034   19.4   0.0    86   261   155   328   145   336 0.82 Acyl-CoA reductase (LuxC)
Gln-synt_C           PF00120.19   259 sp|P78061|PUUA_ECOLI -            472   1.4e-76  257.0   0.0   1   1   1.3e-80   1.9e-76  256.6   0.0     3   257   135   388   133   390 0.95 Glutamine synthetase, catalytic domain
DAO                  PF01266.19   358 sp|P37906|PUUB_ECOLI -            426   5.8e-72  242.5   0.2   1   1   8.6e-75   6.7e-72  242.3   0.2     1   358    29   381    29   381 0.96 FAD dependent oxidoreductase
Thi4                 PF01946.12   230 sp|P37906|PUUB_ECOLI -            426   1.8e-07   30.4   0.2   1   1   4.3e-10   3.4e-07   29.6   0.2     9    64    19    75    12   102 0.91 Thi4 family
NAD_binding_8        PF13450.1     68 sp|P37906|PUUB_ECOLI -            426   2.6e-06   27.3   0.7   1   1   1.3e-08     1e-05   25.4   0.7     1    42    32    71    32    88 0.82 NAD(P)-binding Rossmann-like domain
FAD_binding_3        PF01494.14   356 sp|P37906|PUUB_ECOLI -            426   6.9e-06   25.3   0.6   1   1   8.9e-09   6.9e-06   25.3   0.6     2    33    28    59    27    68 0.94 FAD binding domain
FAD_binding_2        PF00890.19   417 sp|P37906|PUUB_ECOLI -            426   2.8e-05   23.1   0.9   1   1   5.9e-08   4.6e-05   22.4   0.9     1    32    29    60    29    79 0.86 FAD binding domain
Amino_oxidase        PF01593.19   450 sp|P37906|PUUB_ECOLI -            426     4e-05   22.8   0.5   1   2   1.5e-06    0.0012   18.0   0.2     2    23    38    59    37    62 0.94 Flavin containing amine oxidoreductase
UDPG_MGDP_dh_N       PF03721.9    185 sp|P37906|PUUB_ECOLI -            426   0.00035   20.0   0.7   1   1   7.8e-07   0.00061   19.2   0.7     3    31    30    58    28    62 0.92 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
GIDA                 PF01134.17   392 sp|P37906|PUUB_ECOLI -            426   0.00038   19.4   0.4   1   2   1.2e-05    0.0091   14.8   0.1     1    29    29    57    29   102 0.83 Glucose inhibited division protein A
Pyr_redox_2          PF07992.9    201 sp|P37906|PUUB_ECOLI -            426   0.00042   20.2   1.0   1   1   1.4e-06    0.0011   18.8   1.0     1    49    29    81    29   237 0.82 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox            PF00070.22    80 sp|P37906|PUUB_ECOLI -            426    0.0017   18.7   0.4   1   1     5e-06    0.0039   17.5   0.4     2    31    30    59    29    79 0.94 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P37906|PUUB_ECOLI -            426    0.0022   18.0   0.3   1   2   1.5e-05     0.012   15.6   0.2     1    34    31    62    31    91 0.89 Pyridine nucleotide-disulphide oxidoreductase
FAD_oxidored         PF12831.2    428 sp|P37906|PUUB_ECOLI -            426    0.0027   16.8   0.1   1   1   4.8e-06    0.0038   16.3   0.1     1    33    29    61    29   118 0.87 FAD dependent oxidoreductase
HI0933_like          PF03486.9    409 sp|P37906|PUUB_ECOLI -            426    0.0071   14.8   0.7   1   2   2.3e-05     0.018   13.5   0.2     1    32    28    59    28    86 0.93 HI0933-like protein
NAD_binding_7        PF13241.1    103 sp|P37906|PUUB_ECOLI -            426     0.017   15.3   0.0   1   1   4.7e-05     0.036   14.3   0.0     9    39    29    59    26   135 0.83 Putative NAD(P)-binding
Lycopene_cycl        PF05834.7    374 sp|P37906|PUUB_ECOLI -            426     0.018   13.9   0.8   1   1   5.3e-05     0.042   12.7   0.2     1    34    29    60    29    66 0.93 Lycopene cyclase protein
3HCDH_N              PF02737.13   180 sp|P37906|PUUB_ECOLI -            426      0.02   14.5   0.4   1   1     5e-05     0.039   13.6   0.4     2    31    30    59    29    77 0.93 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Trp_halogenase       PF04820.9    454 sp|P37906|PUUB_ECOLI -            426     0.066   11.8   0.1   1   1   0.00012     0.091   11.3   0.1     1    43    29    68    29    94 0.84 Tryptophan halogenase
NAD_binding_9        PF13454.1    156 sp|P37906|PUUB_ECOLI -            426      0.11   12.2   0.4   1   1   0.00037      0.29   10.8   0.0     2    62    32    84    31    98 0.81 FAD-NAD(P)-binding
Peptidase_C26        PF07722.8    217 sp|P76038|PUUD_ECOLI -            254   5.2e-69  232.0   0.0   1   1   1.6e-72   6.1e-69  231.7   0.0     1   217     8   224     8   224 0.97 Peptidase C26
GATase               PF00117.23   192 sp|P76038|PUUD_ECOLI -            254   5.2e-12   45.6   0.0   1   1   1.9e-15   7.2e-12   45.1   0.0    43   190    62   241    31   243 0.70 Glutamine amidotransferase class-I
GATase_3             PF07685.9    158 sp|P76038|PUUD_ECOLI -            254     0.079   12.5   0.1   1   1   0.00025      0.94    9.0   0.1     5    55    59   120    55   126 0.59 CobB/CobQ-like glutamine amidotransferase domain
DJ-1_PfpI            PF01965.19   147 sp|P76038|PUUD_ECOLI -            254      0.14   11.6   0.0   1   1   6.1e-05      0.23   10.9   0.0    61   128    97   168    60   184 0.79 DJ-1/PfpI family
Aminotran_3          PF00202.16   339 sp|P50457|PUUE_ECOLI -            421  1.2e-108  362.9   0.6   1   1    2e-112  1.5e-108  362.6   0.6     3   338    27   359    25   360 0.97 Aminotransferase class-III
Aminotran_1_2        PF00155.16   363 sp|P50457|PUUE_ECOLI -            421   3.1e-05   23.0   0.1   1   1   1.9e-08   0.00014   20.9   0.1   125   281   159   326    40   391 0.61 Aminotransferase class I and II
AA_permease          PF00324.16   478 sp|P76037|PUUP_ECOLI -            461   2.2e-43  148.3  35.4   1   1   5.4e-47   2.7e-43  148.0  35.4     2   431    27   425    26   442 0.81 Amino acid permease
AA_permease_2        PF13520.1    426 sp|P76037|PUUP_ECOLI -            461   5.3e-32  110.8  37.0   1   1   1.3e-35   6.5e-32  110.5  37.0    39   400    61   416    22   436 0.79 Amino acid permease
Tetraspannin         PF00335.15   221 sp|P76037|PUUP_ECOLI -            461       1.5    8.0  12.6   1   2   4.4e-05      0.22   10.7   6.8     6    66   156   224   151   264 0.66 Tetraspanin family
SSF                  PF00474.12   406 sp|P07117|PUTP_ECOLI -            502  3.2e-148  493.7  29.5   1   1  6.7e-152    5e-148  493.0  29.5     1   406    35   437    35   437 0.99 Sodium:solute symporter family
4HB_MCP_1            PF12729.2    181 sp|P07117|PUTP_ECOLI -            502       1.5    8.1   4.1   1   2   5.9e-05      0.44    9.8   0.1     2    34     1    33     1    36 0.92 Four helix bundle sensory module for signal transduction
OTCace_N             PF02729.16   142 sp|P0A786|PYRB_ECOLI -            311   1.8e-43  147.5   0.1   1   1   4.3e-47   3.2e-43  146.8   0.1     1   141     8   148     8   149 0.95 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace               PF00185.19   158 sp|P0A786|PYRB_ECOLI -            311   2.4e-36  125.0   0.1   1   1   5.9e-40   4.4e-36  124.1   0.1     1   157   154   303   154   304 0.94 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Amidohydro_1         PF01979.15   333 sp|P05020|PYRC_ECOLI -            348   2.3e-27   96.5   0.0   1   1   4.1e-31     3e-27   96.1   0.0     8   295    15   310    10   323 0.91 Amidohydrolase family
Amidohydro_2         PF04909.9    273 sp|P05020|PYRC_ECOLI -            348     0.024   14.1   0.2   1   1   5.1e-06     0.038   13.5   0.2     2   172    15   179    14   255 0.73 Amidohydrolase
DHO_dh               PF01180.16   295 sp|P0A7E1|PYRD_ECOLI -            336   1.1e-91  306.8   0.2   1   1   1.8e-95   1.4e-91  306.5   0.2     4   290    47   335    45   336 0.97 Dihydroorotate dehydrogenase
DAHP_synth_2         PF01474.11   439 sp|P0A7E1|PYRD_ECOLI -            336      0.11   10.8   0.0   1   1   2.2e-05      0.17   10.2   0.0   284   314   213   243   198   256 0.88 Class-II DAHP synthetase family
Pribosyltran         PF00156.22   125 sp|P0A7E3|PYRE_ECOLI -            213   5.1e-17   61.7   0.1   1   2   3.4e-20   1.3e-16   60.4   0.0     3   123    39   152    37   154 0.94 Phosphoribosyl transferase domain
TAF4                 PF05236.9    264 sp|P0A7E3|PYRE_ECOLI -            213     0.016   14.5   0.0   1   1   5.1e-06     0.019   14.2   0.0   227   263   163   207   128   208 0.73 Transcription initiation factor TFIID component TAF4 family
PRTase_2             PF15609.1    191 sp|P0A7E3|PYRE_ECOLI -            213      0.12   11.6   0.0   1   1   5.1e-05      0.19   11.0   0.0   121   184   117   181   101   189 0.77 Phosphoribosyl transferase
RIX1                 PF08167.7    165 sp|P0A7E3|PYRE_ECOLI -            213      0.14   11.7   0.0   1   1   5.4e-05       0.2   11.3   0.0    48   109   128   201   125   206 0.85 rRNA processing/ribosome biogenesis
OMPdecase            PF00215.19   226 sp|P08244|PYRF_ECOLI -            245   1.2e-54  185.0   0.0   1   1   9.3e-59   1.4e-54  184.9   0.0     1   226    15   237    15   237 0.96 Orotidine 5'-phosphate decarboxylase / HUMPS family
CTP_synth_N          PF06418.9    276 sp|P0A7E5|PYRG_ECOLI -            545    1e-130  434.8   0.0   1   1  4.2e-134  1.6e-130  434.1   0.0     1   276     3   276     3   276 0.98 CTP synthase N-terminus
GATase               PF00117.23   192 sp|P0A7E5|PYRG_ECOLI -            545   5.4e-52  176.0   0.0   1   1   2.6e-55   9.5e-52  175.2   0.0     2   192   301   535   300   535 0.90 Glutamine amidotransferase class-I
Peptidase_C26        PF07722.8    217 sp|P0A7E5|PYRG_ECOLI -            545   1.2e-10   41.2   0.7   2   2     2e-13   7.4e-10   38.6   0.1    99   217   365   517   359   517 0.80 Peptidase C26
CbiA                 PF01656.18   195 sp|P0A7E5|PYRG_ECOLI -            545   1.4e-05   24.6   0.0   1   1   8.6e-09   3.2e-05   23.4   0.0     8   109    14   148     7   178 0.73 CobQ/CobB/MinD/ParA nucleotide binding domain
AA_kinase            PF00696.23   242 sp|P0A7E9|PYRH_ECOLI -            241   7.2e-28   97.7   0.2   1   1     7e-32     1e-27   97.2   0.2     1   242    10   219    10   219 0.76 Amino acid kinase family
PyrI                 PF01948.13    96 sp|P0A7F3|PYRI_ECOLI -            153   7.7e-37  125.2   0.0   1   1   2.3e-40   1.1e-36  124.6   0.0     2    94     5    97     4    99 0.97 Aspartate carbamoyltransferase regulatory chain, allosteric domain
PyrI_C               PF02748.10    52 sp|P0A7F3|PYRI_ECOLI -            153   8.5e-21   73.1   1.7   1   1   2.7e-24   1.3e-20   72.5   1.7     1    51   101   151   101   152 0.95 Aspartate carbamoyltransferase regulatory chain, metal binding domain
zf-BED               PF02892.10    45 sp|P0A7F3|PYRI_ECOLI -            153     0.023   14.4   0.2   1   1   7.1e-06     0.035   13.8   0.2    16    29   135   148   112   153 0.76 BED zinc finger
ADH_zinc_N           PF00107.21   130 sp|P28304|QOR1_ECOLI -            327   2.9e-30  104.4   0.0   1   1     1e-33     5e-30  103.7   0.0     1   108   152   258   152   285 0.89 Zinc-binding dehydrogenase
ADH_zinc_N_2         PF13602.1    127 sp|P28304|QOR1_ECOLI -            327   1.2e-15   58.5   0.0   1   1   4.1e-19     2e-15   57.7   0.0     2   123   185   321   184   325 0.81 Zinc-binding dehydrogenase
ADH_N                PF08240.7    109 sp|P28304|QOR1_ECOLI -            327   1.6e-13   50.3   0.0   1   2   2.3e-16   1.1e-12   47.6   0.0     2    62    29    88    28    97 0.95 Alcohol dehydrogenase GroES-like domain
Band_7               PF01145.20   179 sp|P0AA53|QMCA_ECOLI -            305   2.6e-35  121.9   0.5   1   2   1.7e-39   2.6e-35  121.9   0.5     1   178    21   203    21   204 0.96 SPFH domain / Band 7 family
NmrA                 PF05368.8    233 sp|P39315|QOR2_ECOLI -            286     2e-24   86.1   0.4   1   1   2.7e-27   3.1e-24   85.5   0.4     1   232     2   220     2   221 0.89 NmrA-like family
NAD_binding_10       PF13460.1    183 sp|P39315|QOR2_ECOLI -            286   2.4e-18   66.8   3.7   1   1   3.6e-21   4.1e-18   66.0   3.7     1   181     2   182     2   184 0.89 NADH(P)-binding
NAD_binding_4        PF07993.7    249 sp|P39315|QOR2_ECOLI -            286   3.9e-06   25.9   0.0   1   1   6.5e-09   7.4e-06   25.0   0.0     1    41     4    44     4    98 0.85 Male sterility protein
3Beta_HSD            PF01073.14   280 sp|P39315|QOR2_ECOLI -            286   4.2e-06   25.6   0.1   1   1     9e-09     1e-05   24.3   0.1     2   117     4   105     3   128 0.83 3-beta hydroxysteroid dehydrogenase/isomerase family
TrkA_N               PF02254.13   116 sp|P39315|QOR2_ECOLI -            286   6.9e-06   26.0   0.1   1   1   1.5e-08   1.7e-05   24.8   0.1     1    58     2    62     2    78 0.88 TrkA-N domain
Saccharop_dh         PF03435.13   386 sp|P39315|QOR2_ECOLI -            286   1.1e-05   24.6   0.2   1   1   1.3e-08   1.5e-05   24.1   0.2     1   100     2   129     2   161 0.78 Saccharopine dehydrogenase
adh_short            PF00106.20   167 sp|P39315|QOR2_ECOLI -            286   5.8e-05   23.0   0.6   1   3   5.1e-08   5.8e-05   23.0   0.6     4    75     3    67     1    72 0.83 short chain dehydrogenase
Epimerase            PF01370.16   236 sp|P39315|QOR2_ECOLI -            286   9.8e-05   21.8   0.1   1   1   4.4e-07    0.0005   19.5   0.1     1    64     2    66     2   128 0.83 NAD dependent epimerase/dehydratase family
KR                   PF08659.5    181 sp|P39315|QOR2_ECOLI -            286   0.00026   20.7   0.4   1   1   2.3e-07   0.00026   20.7   0.4     4    77     3    68     1    74 0.87 KR domain
RmlD_sub_bind        PF04321.12   287 sp|P39315|QOR2_ECOLI -            286    0.0079   15.1   1.4   1   2   0.00041      0.47    9.2   0.1     3    49     2    65     1   103 0.70 RmlD substrate binding domain
Polysacc_synt_2      PF02719.10   294 sp|P39315|QOR2_ECOLI -            286     0.027   13.3   0.1   1   2   0.00042      0.48    9.2   0.0     1    42     2    44     2    67 0.76 Polysaccharide biosynthesis protein
DapB_N               PF01113.15   124 sp|P39315|QOR2_ECOLI -            286     0.071   13.0   0.1   1   1   0.00013      0.15   12.0   0.1     3    40     2    39     1    72 0.71 Dihydrodipicolinate reductase, N-terminus
Semialdhyde_dh       PF01118.19   121 sp|P39315|QOR2_ECOLI -            286      0.14   12.4   2.5   1   1   0.00013      0.15   12.3   0.4     2   110     2   114     1   124 0.69 Semialdehyde dehydrogenase, NAD binding domain
Queuosine_synth      PF02547.10   341 sp|P0A7F9|QUEA_ECOLI -            356  2.4e-144  480.2   0.0   1   1  1.8e-148  2.7e-144  480.1   0.0     2   341     3   344     2   344 0.96 Queuosine biosynthesis protein
QueC                 PF06508.8    210 sp|P77756|QUEC_ECOLI -            231   2.8e-84  281.5   0.0   1   1   1.8e-87   3.3e-84  281.3   0.0     1   209     3   213     3   214 0.99 Queuosine biosynthesis protein QueC
Arginosuc_synth      PF00764.14   388 sp|P77756|QUEC_ECOLI -            231   2.6e-05   23.4   0.1   1   1   2.3e-08   4.3e-05   22.7   0.1     1    59     5    63     5    75 0.91 Arginosuccinate synthase
Asn_synthase         PF00733.16   255 sp|P77756|QUEC_ECOLI -            231   2.6e-05   23.8   0.0   1   1   2.4e-08   4.4e-05   23.1   0.0    21    80     5    64     2    77 0.90 Asparagine synthase
ThiI                 PF02568.9    197 sp|P77756|QUEC_ECOLI -            231   0.00077   18.9   0.0   1   2   2.9e-06    0.0054   16.2   0.1     5   115     3   122     1   126 0.71 Thiamine biosynthesis protein (ThiI)
ATP_bind_3           PF01171.15   182 sp|P77756|QUEC_ECOLI -            231    0.0063   16.0   0.0   1   1     6e-06     0.011   15.2   0.0     2    45     4    43     3    70 0.80 PP-loop family
PAPS_reduct          PF01507.14   174 sp|P77756|QUEC_ECOLI -            231      0.01   15.6   0.0   1   2   3.1e-05     0.057   13.2   0.0     2    54     4    56     3    91 0.88 Phosphoadenosine phosphosulfate reductase family
ATP_bind_4           PF01902.12   219 sp|P77756|QUEC_ECOLI -            231     0.046   13.0   0.0   1   1   3.9e-05     0.073   12.4   0.0     2    27     3    29     1    62 0.85 ATP-binding region
NAD_synthase         PF02540.12   242 sp|P77756|QUEC_ECOLI -            231     0.053   12.4   0.0   1   1     5e-05     0.092   11.6   0.0    19    79     2    60     1    78 0.85 NAD synthase
PTPS                 PF01242.14   123 sp|P65870|QUED_ECOLI -            121     1e-35  122.0   0.0   1   1   1.5e-39   1.1e-35  121.9   0.0     2   123     6   121     5   121 0.97 6-pyruvoyl tetrahydropterin synthase
Antimicrobial_6      PF08036.6     39 sp|P65870|QUED_ECOLI -            121     0.043   13.5   0.1   1   1   1.3e-05     0.097   12.4   0.1    14    28    21    35    18    39 0.92 Diapausin family of antimicrobial peptide
Fer4_14              PF13394.1    119 sp|P64554|QUEE_ECOLI -            223     1e-17   64.2   0.1   1   1     4e-21     2e-17   63.3   0.1     1   114    24   139    24   147 0.83 4Fe-4S single cluster domain
Radical_SAM          PF04055.16   166 sp|P64554|QUEE_ECOLI -            223   1.7e-10   41.3   0.1   1   1   5.3e-14   2.6e-10   40.7   0.1     2   139    26   181    25   196 0.83 Radical SAM superfamily
Fer4_12              PF13353.1    139 sp|P64554|QUEE_ECOLI -            223   3.4e-07   30.4   0.1   1   1   9.9e-11   4.9e-07   29.9   0.1     2    98    13   126    12   141 0.76 4Fe-4S single cluster domain
QueF_N               PF14819.1    110 sp|Q46920|QUEF_ECOLI -            282   7.2e-49  164.4   0.0   1   2   4.4e-52   2.2e-48  162.9   0.0     1   110    21   131    21   131 0.99 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
QueF                 PF14489.1     81 sp|Q46920|QUEF_ECOLI -            282     3e-35  119.9   0.1   1   2   7.8e-08   0.00039   20.3   0.0     4    44    76   115    75   131 0.72 QueF-like protein
QueF                 PF14489.1     81 sp|Q46920|QUEF_ECOLI -            282     3e-35  119.9   0.1   2   2   7.7e-32   3.8e-28   97.2   0.0     1    77   196   270   196   273 0.98 QueF-like protein
C8                   PF08742.6     74 sp|Q46920|QUEF_ECOLI -            282     0.014   15.5   0.0   1   1   1.1e-05     0.052   13.7   0.0    25    71   225   270   216   272 0.90 C8 domain
DUF1730              PF08331.5     78 sp|P39288|QUEG_ECOLI -            379   4.7e-29   99.8   0.0   1   1   1.1e-31   1.2e-28   98.5   0.0     1    78    62   140    62   140 0.99 Domain of unknown function (DUF1730)
Fer4_16              PF13484.1     67 sp|P39288|QUEG_ECOLI -            379   3.2e-15   56.6   3.5   1   1   5.6e-18   5.9e-15   55.7   3.5     2    67   193   256   192   256 0.99 4Fe-4S double cluster binding domain
Fer4_10              PF13237.1     52 sp|P39288|QUEG_ECOLI -            379   8.7e-09   35.0   3.2   1   1   2.1e-11   2.2e-08   33.7   3.4     5    52   189   254   185   254 0.96 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|P39288|QUEG_ECOLI -            379   5.2e-06   26.6   1.1   1   2   2.4e-06    0.0026   17.9   0.1    35    55   183   208   126   208 0.77 4Fe-4S dicluster domain
Fer4_7               PF12838.2     52 sp|P39288|QUEG_ECOLI -            379   0.00039   20.7   7.1   1   2   0.00033      0.35   11.3   4.0    35    52   190   207   183   207 0.88 4Fe-4S dicluster domain
Fer4_7               PF12838.2     52 sp|P39288|QUEG_ECOLI -            379   0.00039   20.7   7.1   2   2   2.7e-06    0.0029   17.9   7.2     2    51   193   256   192   257 0.72 4Fe-4S dicluster domain
Fer4_18              PF13746.1     69 sp|P39288|QUEG_ECOLI -            379   0.00092   19.5   0.3   1   2   0.00014      0.15   12.5   0.0    45    65   186   206   103   208 0.87 4Fe-4S dicluster domain
Fer4_6               PF12837.2     24 sp|P39288|QUEG_ECOLI -            379     0.061   13.2  15.8   1   2    0.0009      0.96    9.4   6.0    12    24   193   208   190   208 0.77 4Fe-4S binding domain
Fer4                 PF00037.22    24 sp|P39288|QUEG_ECOLI -            379      0.74    9.5  16.7   1   2   0.00067      0.71    9.5   7.8     5    23   190   208   188   209 0.91 4Fe-4S binding domain
AAA_25               PF13481.1    194 sp|P24554|RADA_ECOLI -            460   2.5e-26   92.2   0.0   1   1   7.4e-29   4.1e-26   91.5   0.0    10   194    72   226    63   226 0.90 AAA domain
KaiC                 PF06745.8    227 sp|P24554|RADA_ECOLI -            460   5.4e-18   64.9   0.1   1   2   5.8e-14   3.2e-11   42.7   0.1     2    77    78   151    77   162 0.93 KaiC
KaiC                 PF06745.8    227 sp|P24554|RADA_ECOLI -            460   5.4e-18   64.9   0.1   2   2   3.7e-07    0.0002   20.5   0.0   104   203   159   261   149   278 0.78 KaiC
ChlI                 PF13541.1    121 sp|P24554|RADA_ECOLI -            460   5.4e-12   45.2   0.0   1   1   2.2e-14   1.2e-11   44.1   0.0    35   121   348   433   319   433 0.92 Subunit ChlI of Mg-chelatase
Lon_C                PF05362.8    205 sp|P24554|RADA_ECOLI -            460   4.4e-08   32.6   0.1   1   1   1.8e-10     1e-07   31.5   0.1    94   200   356   455   347   457 0.88 Lon protease (S16) C-terminal proteolytic domain
Rad51                PF08423.6    256 sp|P24554|RADA_ECOLI -            460   2.1e-05   23.5   0.4   1   1   3.4e-06    0.0019   17.1   0.4    16   188    73   222    63   231 0.64 Rad51
DnaB_C               PF03796.10   259 sp|P24554|RADA_ECOLI -            460   2.3e-05   23.4   0.3   1   2   3.7e-06     0.002   17.0   0.0     3    66    78   140    76   143 0.81 DnaB-like helicase C terminal domain
RecA                 PF00154.16   323 sp|P24554|RADA_ECOLI -            460   2.6e-05   23.4   0.1   1   1   8.9e-08   4.9e-05   22.5   0.0    17   140    61   179    49   189 0.77 recA bacterial DNA recombination protein
DUF2075              PF09848.4    352 sp|P24554|RADA_ECOLI -            460    0.0004   19.4   0.1   1   1   1.4e-06   0.00077   18.5   0.1     3    55    97   146    95   220 0.74 Uncharacterized conserved protein (DUF2075)
AAA_24               PF13479.1    213 sp|P24554|RADA_ECOLI -            460   0.00053   19.6   0.0   1   1   3.8e-06    0.0021   17.6   0.0     6    81    98   183    95   226 0.83 AAA domain
AAA_14               PF13173.1    128 sp|P24554|RADA_ECOLI -            460   0.00098   19.0   0.0   1   1   2.9e-06    0.0016   18.3   0.0     3    73    96   182    94   227 0.66 AAA domain
ABC_tran             PF00005.22   137 sp|P24554|RADA_ECOLI -            460    0.0017   18.6   0.0   1   1   5.7e-06    0.0032   17.7   0.0     8    80    92   166    88   211 0.70 ABC transporter
GvpD                 PF07088.6    484 sp|P24554|RADA_ECOLI -            460    0.0021   16.4   0.0   1   2   3.8e-05     0.021   13.1   0.0     9    46    94   131    84   158 0.90 GvpD gas vesicle protein
Zeta_toxin           PF06414.7    201 sp|P24554|RADA_ECOLI -            460    0.0027   16.8   0.1   1   1   8.8e-06    0.0048   16.0   0.1    18    41    97   120    95   134 0.84 Zeta toxin
AAA_16               PF13191.1    185 sp|P24554|RADA_ECOLI -            460    0.0035   17.3   0.1   1   1     2e-05     0.011   15.7   0.0    24    87    95   169    81   217 0.66 AAA ATPase domain
AAA_22               PF13401.1    131 sp|P24554|RADA_ECOLI -            460    0.0042   17.2   0.1   1   1   1.7e-05    0.0091   16.1   0.1     6   123    97   219    94   223 0.76 AAA domain
Miro                 PF08477.8    119 sp|P24554|RADA_ECOLI -            460    0.0045   17.4   0.0   1   1   1.7e-05    0.0093   16.4   0.0     2   115    98   219    97   223 0.67 Miro-like protein
T2SE                 PF00437.15   272 sp|P24554|RADA_ECOLI -            460    0.0046   15.8   0.1   1   1   2.5e-05     0.014   14.3   0.0    97   163    64   131    33   188 0.83 Type II/IV secretion system protein
cobW                 PF02492.14   178 sp|P24554|RADA_ECOLI -            460     0.007   15.8   0.0   1   1   2.2e-05     0.012   15.0   0.0     2    37    97   132    96   186 0.84 CobW/HypB/UreG, nucleotide-binding domain
AAA                  PF00004.24   132 sp|P24554|RADA_ECOLI -            460     0.011   15.9   0.0   1   1   3.9e-05     0.021   15.0   0.0     1    75    98   190    98   230 0.74 ATPase family associated with various cellular activities (AAA)
NTPase_1             PF03266.10   168 sp|P24554|RADA_ECOLI -            460     0.016   14.9   0.6   1   2   0.00016     0.087   12.5   0.1     2    26    98   122    97   147 0.85 NTPase
FtsK_SpoIIIE         PF01580.13   205 sp|P24554|RADA_ECOLI -            460      0.02   14.3   0.4   1   1   8.8e-05     0.049   13.1   0.1    38    71    95   124    78   144 0.80 FtsK/SpoIIIE family
AAA_19               PF13245.1     76 sp|P24554|RADA_ECOLI -            460     0.022   14.5   0.2   1   1   0.00015     0.081   12.6   0.2    11    49    96   129    87   149 0.77 Part of AAA domain
DZR                  PF12773.2     50 sp|P24554|RADA_ECOLI -            460     0.054   13.3   0.6   1   1   0.00021      0.12   12.2   0.6     7    37     3    30     1    40 0.79 Double zinc ribbon
AAA_29               PF13555.1     62 sp|P24554|RADA_ECOLI -            460     0.057   12.9   0.2   1   1   0.00023      0.13   11.8   0.2    23    40    95   112    91   125 0.85 P-loop containing region of AAA domain
AAA_5                PF07728.9    139 sp|P24554|RADA_ECOLI -            460     0.061   13.0   0.0   1   1   0.00023      0.13   12.0   0.0     2    83    98   189    97   211 0.78 AAA domain (dynein-related subfamily)
PAXNEB               PF05625.6    363 sp|P24554|RADA_ECOLI -            460     0.096   11.4   0.2   1   1   0.00029      0.16   10.7   0.2    29    53    76   100    69   115 0.89 PAXNEB protein
Viral_helicase1      PF01443.13   234 sp|P24554|RADA_ECOLI -            460      0.13   11.7   0.0   1   1   0.00033      0.18   11.2   0.0     1    23    98   125    98   192 0.68 Viral (Superfamily 1) RNA helicase
Ribosomal_S30AE      PF02482.14    97 sp|P0AD49|RAIA_ECOLI -            113   1.2e-28   99.3   0.1   1   1     1e-32   1.5e-28   99.0   0.1     2    95     3    93     2    95 0.96 Sigma 54 modulation protein / S30EA ribosomal protein
RapA_C               PF12137.3    362 sp|P60240|RAPA_ECOLI -            968  2.9e-161  536.3   1.1   1   1  3.1e-164  4.1e-161  535.8   1.1     1   362   604   966   604   966 1.00 RNA polymerase recycling family C-terminal
SNF2_N               PF00176.18   299 sp|P60240|RAPA_ECOLI -            968   5.8e-37  127.0   0.0   1   1   7.2e-40   9.7e-37  126.3   0.0    23   261   168   422   157   468 0.83 SNF2 family N-terminal domain
Helicase_C           PF00271.26    78 sp|P60240|RAPA_ECOLI -            968   1.4e-13   50.4   0.0   1   1   2.7e-16   3.6e-13   49.1   0.0     3    78   524   601   522   601 0.96 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|P60240|RAPA_ECOLI -            968   1.8e-08   34.4   0.0   1   1   5.2e-11     7e-08   32.5   0.0    24   183   169   317   151   318 0.75 Type III restriction enzyme, res subunit
DEAD                 PF00270.24   169 sp|P60240|RAPA_ECOLI -            968   2.3e-08   33.7   0.0   1   2   1.2e-10   1.6e-07   31.0   0.0    16   163   172   317   155   321 0.76 DEAD/DEAH box helicase
Aconitase_B_N        PF11791.3    154 sp|P60240|RAPA_ECOLI -            968     0.045   13.5   0.0   1   1   0.00011      0.15   11.9   0.0    84   123   370   408   363   424 0.85 Aconitate B N-terminal domain
AAA_22               PF13401.1    131 sp|P60240|RAPA_ECOLI -            968     0.047   13.8   0.0   1   1   0.00023      0.31   11.1   0.0    72   125   248   316   167   320 0.59 AAA domain
COG2                 PF06148.6    133 sp|P60240|RAPA_ECOLI -            968     0.097   12.5   5.0   2   2   0.00049      0.66    9.8   1.6    23   131   853   959   850   961 0.86 COG (conserved oligomeric Golgi) complex component, COG2
Flavi_DEAD           PF07652.9    148 sp|P60240|RAPA_ECOLI -            968      0.11   12.2   0.0   1   1   0.00018      0.24   11.1   0.0    70   137   248   317   180   327 0.76 Flavivirus DEAD domain
ATP_bind_2           PF03668.10   284 sp|P0A894|RAPZ_ECOLI -            284  2.1e-147  489.6   0.0   1   1  1.4e-150  2.3e-147  489.5   0.0     1   284     1   282     1   282 1.00 P-loop ATPase protein family
AAA_18               PF13238.1    129 sp|P0A894|RAPZ_ECOLI -            284     4e-05   23.9   0.0   1   1     9e-07    0.0015   18.8   0.0     2   115     5   102     5   118 0.74 AAA domain
AAA_17               PF13207.1    121 sp|P0A894|RAPZ_ECOLI -            284    0.0044   17.8   0.0   1   1   7.1e-06     0.012   16.4   0.0     3    30     5    31     3   221 0.78 AAA domain
FtsK_SpoIIIE         PF01580.13   205 sp|P0A894|RAPZ_ECOLI -            284     0.029   13.8   0.0   1   1   3.8e-05     0.062   12.7   0.0    41    58     4    21     3    29 0.96 FtsK/SpoIIIE family
AAA_28               PF13521.1    163 sp|P0A894|RAPZ_ECOLI -            284     0.033   14.1   0.0   1   1   3.3e-05     0.054   13.4   0.0     3    80     5    87     3   114 0.70 AAA domain
AAA_10               PF12846.2    304 sp|P0A894|RAPZ_ECOLI -            284     0.039   13.3   0.8   1   2   0.00022      0.36   10.2   0.2     4    21     4    21     2    39 0.89 AAA-like domain
AAA_22               PF13401.1    131 sp|P0A894|RAPZ_ECOLI -            284     0.065   13.3   0.0   1   1   9.4e-05      0.16   12.1   0.0     7    26     4    23     2    86 0.91 AAA domain
MgsA_C               PF12002.3    168 sp|P0AAZ4|RARA_ECOLI -            447   2.6e-68  228.9   0.6   1   1   1.2e-70   4.5e-68  228.1   0.6     1   167   268   435   268   436 0.99 MgsA AAA+ ATPase C terminal
AAA                  PF00004.24   132 sp|P0AAZ4|RARA_ECOLI -            447   2.5e-18   66.5   0.1   1   2   7.6e-20   2.9e-17   63.1   0.0     1   126    53   159    53   165 0.91 ATPase family associated with various cellular activities (AAA)
RuvB_N               PF05496.7    234 sp|P0AAZ4|RARA_ECOLI -            447   3.8e-16   58.8   0.1   1   2   5.6e-18   2.1e-15   56.3   0.0    15   133    17   138     7   155 0.79 Holliday junction DNA helicase ruvB N-terminus
AAA_5                PF07728.9    139 sp|P0AAZ4|RARA_ECOLI -            447   9.7e-08   31.8   0.1   1   1   3.4e-09   1.3e-06   28.2   0.1     2   102    53   143    52   236 0.84 AAA domain (dynein-related subfamily)
AAA_19               PF13245.1     76 sp|P0AAZ4|RARA_ECOLI -            447   1.5e-07   31.0   0.4   1   1   4.4e-09   1.7e-06   27.6   0.0    10    62    51    95    43   134 0.65 Part of AAA domain
Mg_chelatase         PF01078.16   207 sp|P0AAZ4|RARA_ECOLI -            447   3.9e-07   29.4   0.4   1   2   2.4e-06   0.00093   18.4   0.1    19    44    47    72    26   104 0.78 Magnesium chelatase, subunit ChlI
AAA_22               PF13401.1    131 sp|P0AAZ4|RARA_ECOLI -            447   1.2e-06   28.7   1.1   1   1     1e-06   0.00038   20.5   0.2     6    87    52   123    46   144 0.81 AAA domain
Sigma54_activat      PF00158.21   168 sp|P0AAZ4|RARA_ECOLI -            447   5.8e-06   25.8   0.0   2   2   2.1e-05    0.0078   15.6   0.0    93   131   106   144    93   175 0.86 Sigma-54 interaction domain
AAA_16               PF13191.1    185 sp|P0AAZ4|RARA_ECOLI -            447   1.4e-05   25.1   0.2   1   2     2e-05    0.0074   16.2   0.0    18    51    44    77    31    88 0.77 AAA ATPase domain
DNA_pol3_delta2      PF13177.1    162 sp|P0AAZ4|RARA_ECOLI -            447   1.7e-05   24.5   0.0   2   2   3.3e-06    0.0013   18.4   0.0    67   161    75   165    69   166 0.83 DNA polymerase III, delta subunit
AAA_17               PF13207.1    121 sp|P0AAZ4|RARA_ECOLI -            447   5.9e-05   23.8   0.0   1   1   3.7e-07   0.00014   22.6   0.0     6    60    57   109    54   187 0.76 AAA domain
AAA_3                PF07726.6    131 sp|P0AAZ4|RARA_ECOLI -            447   6.3e-05   22.6   0.0   1   1   9.9e-07   0.00038   20.0   0.0     2    99    53   143    51   152 0.87 ATPase family associated with various cellular activities (AAA)
AAA_30               PF13604.1    196 sp|P0AAZ4|RARA_ECOLI -            447   8.2e-05   22.2   0.1   1   1   1.3e-05    0.0049   16.4   0.1    21   119    53   132    43   224 0.76 AAA domain
AAA_14               PF13173.1    128 sp|P0AAZ4|RARA_ECOLI -            447   9.9e-05   22.2   0.0   1   1   5.6e-07   0.00021   21.1   0.0     5   125    53   168    51   181 0.67 AAA domain
AAA_2                PF07724.9    171 sp|P0AAZ4|RARA_ECOLI -            447   0.00014   21.8   0.0   1   1   1.7e-06   0.00066   19.6   0.0     5   109    52   136    49   238 0.88 AAA domain (Cdc48 subfamily)
IstB_IS21            PF01695.12   178 sp|P0AAZ4|RARA_ECOLI -            447   0.00014   21.3   0.1   1   1   1.5e-06   0.00057   19.3   0.0    48   115    51   113    47   129 0.68 IstB-like ATP binding protein
RNA_helicase         PF00910.17   107 sp|P0AAZ4|RARA_ECOLI -            447   0.00022   21.3   0.0   1   2   0.00029      0.11   12.6   0.0     2    26    54    78    53    94 0.82 RNA helicase
Sigma54_activ_2      PF14532.1    138 sp|P0AAZ4|RARA_ECOLI -            447   0.00041   20.4   0.0   1   1   1.9e-06   0.00074   19.5   0.0    24   104    53   138    43   168 0.79 Sigma-54 interaction domain
ATP-synt_ab          PF00006.20   215 sp|P0AAZ4|RARA_ECOLI -            447   0.00064   19.2   0.0   1   1   6.2e-06    0.0023   17.4   0.0    18    78    53   114    49   126 0.86 ATP synthase alpha/beta family, nucleotide-binding domain
ResIII               PF04851.10   184 sp|P0AAZ4|RARA_ECOLI -            447   0.00071   19.4   0.3   2   2    0.0011       0.4   10.4   0.0   127   163    86   123    74   144 0.72 Type III restriction enzyme, res subunit
AAA_33               PF13671.1    143 sp|P0AAZ4|RARA_ECOLI -            447    0.0016   18.3   0.0   1   1     1e-05     0.004   17.0   0.0     3    42    54   100    53   158 0.70 AAA domain
AAA_28               PF13521.1    163 sp|P0AAZ4|RARA_ECOLI -            447    0.0023   17.9   0.1   1   1   2.7e-05      0.01   15.7   0.0     3    45    54   109    52   133 0.62 AAA domain
ABC_tran             PF00005.22   137 sp|P0AAZ4|RARA_ECOLI -            447    0.0027   17.9   0.0   1   1   1.3e-05    0.0048   17.2   0.0    14    67    53   101    44   211 0.73 ABC transporter
DUF815               PF05673.8    250 sp|P0AAZ4|RARA_ECOLI -            447    0.0041   16.0   0.0   1   1   1.7e-05    0.0064   15.4   0.0    53   122    50   122    17   137 0.75 Protein of unknown function (DUF815)
AAA_11               PF13086.1    236 sp|P0AAZ4|RARA_ECOLI -            447    0.0082   15.7   0.1   1   1   4.9e-05     0.019   14.5   0.0    20    75    53   100    39   179 0.76 AAA domain
AAA_18               PF13238.1    129 sp|P0AAZ4|RARA_ECOLI -            447     0.016   15.5   0.0   1   1   9.5e-05     0.036   14.3   0.0     3    21    55    73    54   131 0.78 AAA domain
cobW                 PF02492.14   178 sp|P0AAZ4|RARA_ECOLI -            447      0.02   14.3   0.0   1   1   0.00011     0.044   13.2   0.0     3    50    53   101    51   116 0.84 CobW/HypB/UreG, nucleotide-binding domain
AAA_25               PF13481.1    194 sp|P0AAZ4|RARA_ECOLI -            447      0.02   14.2   0.2   1   1   0.00021     0.082   12.3   0.1    18    50    38    67    21    79 0.75 AAA domain
AAA_24               PF13479.1    213 sp|P0AAZ4|RARA_ECOLI -            447     0.024   14.2   0.0   1   1   0.00015     0.057   13.0   0.0     5    33    52    80    50   119 0.82 AAA domain
T2SE                 PF00437.15   272 sp|P0AAZ4|RARA_ECOLI -            447     0.029   13.2   0.0   1   1   0.00016     0.062   12.1   0.0   129   162    51    84    17   100 0.84 Type II/IV secretion system protein
NACHT                PF05729.7    166 sp|P0AAZ4|RARA_ECOLI -            447     0.031   13.9   0.0   1   1    0.0007      0.27   10.8   0.0     3    23    53    73    51    80 0.86 NACHT domain
DUF2075              PF09848.4    352 sp|P0AAZ4|RARA_ECOLI -            447     0.069   12.1   0.4   1   1    0.0013      0.48    9.3   0.4     6    74    55   122    51   286 0.72 Uncharacterized conserved protein (DUF2075)
TIP49                PF06068.8    398 sp|P0AAZ4|RARA_ECOLI -            447     0.091   11.4   0.0   1   1   0.00058      0.22   10.1   0.0    27    86    29    86    16   111 0.79 TIP49 C-terminus
DUF258               PF03193.11   161 sp|P0AAZ4|RARA_ECOLI -            447     0.091   11.9   0.0   1   1   0.00042      0.16   11.1   0.0    36    70    51    85    38   108 0.89 Protein of unknown function, DUF258
PhoH                 PF02562.11   205 sp|P0AAZ4|RARA_ECOLI -            447      0.11   11.7   0.1   1   1    0.0011      0.43    9.7   0.0    21    52    52    81    39   102 0.76 PhoH-like protein
NTPase_1             PF03266.10   168 sp|P0AAZ4|RARA_ECOLI -            447      0.11   12.2   0.1   1   1   0.00058      0.22   11.2   0.1     2    40    53    90    52   144 0.70 NTPase
MobB                 PF03205.9    140 sp|P0AAZ4|RARA_ECOLI -            447      0.16   11.6   0.0   1   1   0.00097      0.37   10.4   0.0     6    29    56    79    52    91 0.82 Molybdopterin guanine dinucleotide synthesis protein B
Parvo_NS1            PF01057.12   272 sp|P0AAZ4|RARA_ECOLI -            447      0.17   10.7   0.0   1   1     0.002      0.75    8.6   0.0   117   136    53    72    37   108 0.91 Parvovirus non-structural protein NS1
EamA                 PF00892.15   126 sp|P27844|RARD_ECOLI -            296   2.5e-17   63.0  33.6   1   2   4.8e-16   2.4e-12   47.0  12.2     1   123    18   142    18   145 0.90 EamA-like transporter family
EamA                 PF00892.15   126 sp|P27844|RARD_ECOLI -            296   2.5e-17   63.0  33.6   2   2   1.3e-08   6.7e-05   22.9  12.5     1   125   159   284   159   285 0.83 EamA-like transporter family
EmrE                 PF13536.1    113 sp|P27844|RARD_ECOLI -            296   3.2e-08   33.7  35.1   1   3   1.4e-11     7e-08   32.6  13.3     4   108    42   147    39   151 0.90 Multidrug resistance efflux transporter
TPT                  PF03151.11   153 sp|P27844|RARD_ECOLI -            296    0.0085   15.7  11.1   1   2   1.7e-06    0.0085   15.7  11.1    37   149    37   141     9   142 0.85 Triose-phosphate Transporter family
Polyketide_cyc       PF03364.15   130 sp|P0AGL5|RATA_ECOLI -            158   1.3e-31  109.3   0.0   1   1   4.1e-35   1.5e-31  109.0   0.0     1   130    23   148    23   148 0.99 Polyketide cyclase / dehydrase and lipid transport
Polyketide_cyc2      PF10604.4    139 sp|P0AGL5|RATA_ECOLI -            158   3.4e-11   43.4   0.0   1   1   1.1e-14   4.2e-11   43.1   0.0     1   129    14   146    14   154 0.73 Polyketide cyclase / dehydrase and lipid transport
COXG                 PF06240.8    140 sp|P0AGL5|RATA_ECOLI -            158     0.025   14.2   0.0   1   2   2.3e-05     0.086   12.5   0.0     5    61    23    82    19    89 0.82 Carbon monoxide dehydrogenase subunit G (CoxG)
Fe_dep_repr_C        PF02742.10    71 sp|P0AGL5|RATA_ECOLI -            158     0.089   12.4   0.0   1   1   6.1e-05      0.23   11.1   0.0    34    55   109   130   102   135 0.90 Iron dependent repressor, metal binding and dimerisation domain
Ub-RnfH              PF03658.9     84 sp|P52119|RATB_ECOLI -             96   1.9e-38  130.1   0.1   1   1   2.9e-42   2.2e-38  130.0   0.1     1    84     5    88     5    88 0.99 RnfH family Ubiquitin
Ub-Mut7C             PF14451.1     81 sp|P52119|RATB_ECOLI -             96     0.056   12.9   0.0   1   1   2.2e-05      0.16   11.4   0.0    25    74    20    75    10    80 0.77 Mut7-C ubiquitin
AAA_5                PF07728.9    139 sp|P31473|RAVA_ECOLI -            498   6.4e-25   87.5   0.0   1   1   7.1e-28   1.2e-24   86.6   0.0     1   139    41   171    41   171 0.92 AAA domain (dynein-related subfamily)
DUF3763              PF12592.3     57 sp|P31473|RAVA_ECOLI -            498   4.4e-22   77.4   1.3   1   1   7.4e-25   1.2e-21   76.0   1.3     3    57   444   498   442   498 0.97 Protein of unknown function (DUF3763)
AAA_16               PF13191.1    185 sp|P31473|RAVA_ECOLI -            498   9.9e-05   22.4   0.2   1   1   2.4e-07    0.0004   20.4   0.2    19    81    34    97    22   313 0.80 AAA ATPase domain
AAA_3                PF07726.6    131 sp|P31473|RAVA_ECOLI -            498   0.00014   21.4   0.0   1   1   1.5e-07   0.00024   20.6   0.0     2   111    42   156    41   173 0.77 ATPase family associated with various cellular activities (AAA)
Mg_chelatase         PF01078.16   207 sp|P31473|RAVA_ECOLI -            498   0.00017   20.7   0.0   1   2   1.6e-06    0.0027   16.9   0.0     8    49    25    66    20    78 0.84 Magnesium chelatase, subunit ChlI
Sigma54_activat      PF00158.21   168 sp|P31473|RAVA_ECOLI -            498   0.00024   20.6   0.0   1   1   2.8e-06    0.0047   16.4   0.0    18   148    35   160    24   180 0.62 Sigma-54 interaction domain
AAA                  PF00004.24   132 sp|P31473|RAVA_ECOLI -            498   0.00067   19.8   0.0   1   1   9.7e-07    0.0016   18.6   0.0     1   128    42   175    42   179 0.68 ATPase family associated with various cellular activities (AAA)
AAA_PrkA             PF08298.6    358 sp|P31473|RAVA_ECOLI -            498      0.01   14.5   0.0   2   2   0.00023      0.38    9.3   0.0   237   303   111   172   100   181 0.85 PrkA AAA domain
AAA_2                PF07724.9    171 sp|P31473|RAVA_ECOLI -            498     0.067   13.1   0.0   1   1   8.6e-05      0.14   12.0   0.0     6   101    42   129    39   156 0.84 AAA domain (Cdc48 subfamily)
Y1_Tnp               PF01797.11   121 sp|Q47152|RAYT_ECOLI -            165   0.00018   21.3   2.5   1   1   5.4e-08    0.0008   19.2   2.5    12    99    20   101    11   119 0.73 Transposase IS200 like
ABC_tran             PF00005.22   137 sp|P37624|RBBA_ECOLI -            911   4.5e-55  185.6   0.0   1   2     4e-28   2.6e-25   89.3   0.0     1   136    28   175    28   176 0.97 ABC transporter
ABC_tran             PF00005.22   137 sp|P37624|RBBA_ECOLI -            911   4.5e-55  185.6   0.0   2   2   1.2e-29   7.8e-27   94.2   0.0     2   137   293   436   292   436 0.94 ABC transporter
ABC2_membrane_3      PF12698.2    344 sp|P37624|RBBA_ECOLI -            911   2.7e-41  141.7   6.2   1   1   6.5e-44   4.2e-41  141.1   6.2    11   343   568   903   560   904 0.88 ABC-2 family transporter protein
AAA_21               PF13304.1    303 sp|P37624|RBBA_ECOLI -            911   7.9e-22   78.5   1.8   1   4   0.00053      0.34   10.8   0.2     3    22    42    61    40   120 0.90 AAA domain
AAA_21               PF13304.1    303 sp|P37624|RBBA_ECOLI -            911   7.9e-22   78.5   1.8   2   4   1.3e-08   8.1e-06   25.9   0.0   232   294   143   204    96   206 0.85 AAA domain
AAA_21               PF13304.1    303 sp|P37624|RBBA_ECOLI -            911   7.9e-22   78.5   1.8   3   4   0.00061      0.39   10.6   0.1     3    54   306   355   304   372 0.66 AAA domain
AAA_21               PF13304.1    303 sp|P37624|RBBA_ECOLI -            911   7.9e-22   78.5   1.8   4   4   2.5e-09   1.6e-06   28.3   0.0   220   297   391   466   343   466 0.79 AAA domain
ABC2_membrane_2      PF12679.2    277 sp|P37624|RBBA_ECOLI -            911   8.5e-20   70.7   5.2   1   1   2.5e-22   1.6e-19   69.8   5.2    72   275   675   909   544   910 0.77 ABC-2 family transporter protein
ABC2_membrane        PF01061.19   210 sp|P37624|RBBA_ECOLI -            911     2e-17   63.0  12.8   2   2   6.8e-20   4.4e-17   61.9  10.3    53   208   719   874   681   876 0.85 ABC-2 type transporter
ABC2_membrane_4      PF12730.2    232 sp|P37624|RBBA_ECOLI -            911     2e-08   33.6  15.8   1   1   5.4e-11   3.5e-08   32.8  15.8    50   227   718   898   550   906 0.63 ABC-2 family transporter protein
AAA_29               PF13555.1     62 sp|P37624|RBBA_ECOLI -            911   6.5e-05   22.3   0.2   2   2   0.00027      0.17   11.4   0.0    14    47   294   326   287   333 0.76 P-loop containing region of AAA domain
AAA_25               PF13481.1    194 sp|P37624|RBBA_ECOLI -            911   9.2e-05   21.9   0.0   1   2    0.0015      0.98    8.7   0.0    30    82    35    77    30   134 0.74 AAA domain
AAA_25               PF13481.1    194 sp|P37624|RBBA_ECOLI -            911   9.2e-05   21.9   0.0   2   2   0.00076      0.49    9.7   0.1    29    78   298   355   271   471 0.70 AAA domain
DUF258               PF03193.11   161 sp|P37624|RBBA_ECOLI -            911   0.00014   21.1   0.1   1   2   0.00011     0.069   12.3   0.1    36    66    39    69    14    76 0.77 Protein of unknown function, DUF258
AAA_23               PF13476.1    202 sp|P37624|RBBA_ECOLI -            911   0.00062   20.1   0.4   2   2   6.6e-05     0.043   14.1   0.1     7    43   286   326   285   333 0.82 AAA domain
MMR_HSR1             PF01926.18   116 sp|P37624|RBBA_ECOLI -            911    0.0032   17.4   0.0   1   2    0.0006      0.38   10.7   0.0     2    27    41    66    40    89 0.86 50S ribosome-binding GTPase
AAA_15               PF13175.1    415 sp|P37624|RBBA_ECOLI -            911     0.014   14.4   0.0   2   2   0.00049      0.32    9.9   0.0   372   410   428   466   423   468 0.95 AAA ATPase domain
RBFA                 PF02033.13   104 sp|P0A7G2|RBFA_ECOLI -            133   8.8e-35  118.8   0.1   1   1     7e-39     1e-34  118.6   0.1     1   103     7   112     7   113 0.94 Ribosome-binding factor A
Lactamase_B_2        PF12706.2    194 sp|P0A8V0|RBN_ECOLI  -            305   1.9e-27   96.1   0.0   1   1   6.3e-31   3.1e-27   95.3   0.0     3   193    35   270    34   271 0.82 Beta-lactamase superfamily domain
Lactamase_B          PF00753.22   194 sp|P0A8V0|RBN_ECOLI  -            305   3.7e-14   52.8   0.2   1   2   9.3e-17   4.6e-13   49.2   0.1     3   128    16   142    14   149 0.92 Metallo-beta-lactamase superfamily
Lactamase_B_4        PF13691.1     63 sp|P0A8V0|RBN_ECOLI  -            305    0.0018   17.7   0.0   1   1   6.7e-07    0.0033   16.8   0.0    21    56    32    66    10   109 0.83 tRNase Z endonuclease
ABC_tran             PF00005.22   137 sp|P04983|RBSA_ECOLI -            501   3.2e-56  189.4   0.1   1   2   1.5e-31   1.1e-28  100.2   0.0     3   136    22   169    20   170 0.95 ABC transporter
ABC_tran             PF00005.22   137 sp|P04983|RBSA_ECOLI -            501   3.2e-56  189.4   0.1   2   2   1.5e-27   1.1e-24   87.2   0.0     2   136   269   423   268   424 0.92 ABC transporter
AAA_21               PF13304.1    303 sp|P04983|RBSA_ECOLI -            501   9.1e-11   42.2   0.1   1   2     3e-08   2.2e-05   24.5   0.1     1   297    32   199    32   220 0.84 AAA domain
AAA_21               PF13304.1    303 sp|P04983|RBSA_ECOLI -            501   9.1e-11   42.2   0.1   2   2   3.1e-05     0.023   14.6   0.0   220   289   379   445   327   452 0.80 AAA domain
UPF0079              PF02367.12   123 sp|P04983|RBSA_ECOLI -            501   1.1e-05   25.0   0.5   1   2   0.00081       0.6    9.7   0.0    11    36    26    51    20   126 0.90 Uncharacterised P-loop hydrolase UPF0079
UPF0079              PF02367.12   123 sp|P04983|RBSA_ECOLI -            501   1.1e-05   25.0   0.5   2   2   6.8e-05      0.05   13.2   0.1    10    41   273   305   268   319 0.83 Uncharacterised P-loop hydrolase UPF0079
SMC_N                PF02463.14   220 sp|P04983|RBSA_ECOLI -            501     5e-05   22.6   0.0   1   2   2.6e-05     0.019   14.2   0.7    25   204    31   207    15   221 0.70 RecF/RecN/SMC N terminal domain
AAA_30               PF13604.1    196 sp|P04983|RBSA_ECOLI -            501   0.00012   21.7   0.9   1   2   4.1e-05      0.03   13.8   0.2    17    48    29    60    22    71 0.83 AAA domain
AAA_29               PF13555.1     62 sp|P04983|RBSA_ECOLI -            501   0.00086   18.7   0.0   1   1   4.6e-06    0.0034   16.8   0.0    23    40    30    47    19    58 0.82 P-loop containing region of AAA domain
ABC_ATPase           PF09818.4    448 sp|P04983|RBSA_ECOLI -            501    0.0011   17.7   2.1   2   2   0.00021      0.16   10.5   0.0   378   413   436   470   367   494 0.77 Predicted ATPase of the ABC class
AAA_25               PF13481.1    194 sp|P04983|RBSA_ECOLI -            501    0.0053   16.1   0.7   1   1   4.7e-05     0.035   13.5   0.2    16    59    11    66     3    90 0.68 AAA domain
DUF258               PF03193.11   161 sp|P04983|RBSA_ECOLI -            501    0.0053   15.9   0.2   1   2   7.3e-05     0.054   12.6   0.1    35    63    30    58    17    79 0.81 Protein of unknown function, DUF258
AAA_22               PF13401.1    131 sp|P04983|RBSA_ECOLI -            501     0.011   15.8   2.1   1   2    0.0012      0.86    9.7   0.1     5    25    31    51    28    81 0.87 AAA domain
AAA_16               PF13191.1    185 sp|P04983|RBSA_ECOLI -            501     0.036   14.0   0.3   1   2    0.0005      0.37   10.7   0.0    23    59    29    66    18   212 0.73 AAA ATPase domain
AAA_23               PF13476.1    202 sp|P04983|RBSA_ECOLI -            501     0.046   14.0   0.2   1   1   0.00019      0.14   12.4   0.1    23    40    34    51    26    61 0.85 AAA domain
AAA_10               PF12846.2    304 sp|P04983|RBSA_ECOLI -            501     0.068   12.5   5.8   1   3   0.00065      0.48    9.8   0.1     3    22    32    51    30    67 0.85 AAA-like domain
Peripla_BP_4         PF13407.1    257 sp|P02925|RBSB_ECOLI -            296   1.5e-57  194.9  11.9   1   1   5.8e-61   1.7e-57  194.6  11.9     1   257    29   281    29   281 0.97 Periplasmic binding protein domain
Peripla_BP_1         PF00532.16   279 sp|P02925|RBSB_ECOLI -            296   2.7e-26   92.3   2.4   1   1   1.1e-29   3.3e-26   92.1   2.4     2   250    27   268    26   289 0.86 Periplasmic binding proteins and sugar binding domain of LacI family
Peripla_BP_3         PF13377.1    160 sp|P02925|RBSB_ECOLI -            296   4.7e-15   55.9   0.0   2   2     7e-18   2.1e-14   53.8   0.0    19   145   158   284   148   296 0.81 Periplasmic binding protein-like domain
Peripla_BP_6         PF13458.1    343 sp|P02925|RBSB_ECOLI -            296   1.8e-11   44.0   4.0   1   1   7.6e-15   2.2e-11   43.6   4.0    44   234    58   248    19   283 0.86 Periplasmic binding protein
ABC_sub_bind         PF04392.7    294 sp|P02925|RBSB_ECOLI -            296     0.015   14.2   3.5   1   2   4.8e-05      0.14   11.0   0.9   145   247    41   143    13   154 0.74 ABC transporter substrate binding protein
BPD_transp_2         PF02653.11   267 sp|P0AGI1|RBSC_ECOLI -            321   8.9e-53  178.9  42.6   1   1   9.2e-57   1.4e-52  178.3  42.6     1   267    45   314    45   314 0.95 Branched-chain amino acid transport system / permease component
RbsD_FucU            PF05025.8    142 sp|P04982|RBSD_ECOLI -            139   1.4e-50  171.3   0.4   1   1     1e-54   1.5e-50  171.1   0.4     1   142     1   139     1   139 0.99 RbsD / FucU transport protein family
PfkB                 PF00294.19   301 sp|P0A9J6|RBSK_ECOLI -            309   3.8e-75  252.8   3.3   1   1   1.7e-78   4.3e-75  252.6   3.3     3   300     6   297     4   298 0.95 pfkB family carbohydrate kinase
Phos_pyr_kin         PF08543.7    246 sp|P0A9J6|RBSK_ECOLI -            309   1.8e-15   56.8   0.4   1   1     1e-18   2.5e-15   56.3   0.4   104   230   165   284   127   293 0.82 Phosphomethylpyrimidine kinase
Carb_kinase          PF01256.12   242 sp|P0A9J6|RBSK_ECOLI -            309    0.0058   15.9   0.4   1   1   7.4e-06     0.018   14.3   0.1   119   204   183   274   179   299 0.68 Carbohydrate kinase
Aldolase             PF01081.14   196 sp|P0A9J6|RBSK_ECOLI -            309    0.0072   15.5   0.2   1   1   6.9e-06     0.017   14.2   0.0     7    64   190   247   184   260 0.83 KDPG and KHG aldolase
Hydrolase            PF00702.21   215 sp|P0A9J6|RBSK_ECOLI -            309     0.048   14.0   2.1   1   1   2.5e-05     0.062   13.6   1.8    70   152   105   226    29   276 0.66 haloacid dehalogenase-like hydrolase
Peripla_BP_3         PF13377.1    160 sp|P0A9J6|RBSK_ECOLI -            309     0.063   13.2   0.9   1   1   5.9e-05      0.15   12.0   0.1    31    93   146   218   121   220 0.68 Periplasmic binding protein-like domain
Pyr_redox_2          PF07992.9    201 sp|P77212|RCLA_ECOLI -            441   1.9e-34  119.3   6.4   1   3   4.8e-23     3e-20   72.9   0.1     2   159     6   165     5   165 0.90 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|P77212|RCLA_ECOLI -            441   1.9e-34  119.3   6.4   2   3   4.3e-06    0.0027   17.6   0.5     4   125   163   257   160   261 0.72 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2          PF07992.9    201 sp|P77212|RCLA_ECOLI -            441   1.9e-34  119.3   6.4   3   3   3.1e-10   1.9e-07   31.1   0.1   162   199   258   296   256   298 0.92 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim        PF02852.17   110 sp|P77212|RCLA_ECOLI -            441   1.9e-28   98.6   0.0   1   1   5.7e-31   3.5e-28   97.8   0.0     1   107   328   434   328   437 0.98 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Pyr_redox            PF00070.22    80 sp|P77212|RCLA_ECOLI -            441   1.8e-24   85.9   0.9   2   2   2.6e-24   1.6e-21   76.4   0.0     1    78   160   235   160   238 0.95 Pyridine nucleotide-disulphide oxidoreductase
DAO                  PF01266.19   358 sp|P77212|RCLA_ECOLI -            441   7.3e-11   41.5   1.8   1   3   1.3e-06   0.00083   18.3   0.0     2    41     6    45     5   110 0.82 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|P77212|RCLA_ECOLI -            441   7.3e-11   41.5   1.8   3   3   8.8e-06    0.0055   15.6   0.1   148   233   200   284   197   374 0.70 FAD dependent oxidoreductase
3HCDH_N              PF02737.13   180 sp|P77212|RCLA_ECOLI -            441   4.1e-09   36.3   0.5   1   2   7.4e-05     0.046   13.3   0.1     2    34     6    38     5    72 0.91 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
3HCDH_N              PF02737.13   180 sp|P77212|RCLA_ECOLI -            441   4.1e-09   36.3   0.5   2   2   2.7e-07   0.00016   21.3   0.0     2    75   161   233   160   249 0.79 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Pyr_redox_3          PF13738.1    203 sp|P77212|RCLA_ECOLI -            441   1.9e-08   34.6   0.6   3   3   5.7e-06    0.0035   17.4   0.0    82   155   199   267   190   287 0.86 Pyridine nucleotide-disulphide oxidoreductase
HI0933_like          PF03486.9    409 sp|P77212|RCLA_ECOLI -            441   6.9e-08   31.3   0.1   1   2   0.00013     0.079   11.4   0.0     2    35     5    38     4    82 0.90 HI0933-like protein
HI0933_like          PF03486.9    409 sp|P77212|RCLA_ECOLI -            441   6.9e-08   31.3   0.1   2   2   1.4e-06   0.00087   17.8   0.0    81   164   172   252   164   271 0.91 HI0933-like protein
GIDA                 PF01134.17   392 sp|P77212|RCLA_ECOLI -            441   1.1e-05   24.5   2.6   1   3   1.7e-06    0.0011   17.9   1.0     2    47     6    55     5    72 0.88 Glucose inhibited division protein A
2-Hacid_dh_C         PF02826.14   178 sp|P77212|RCLA_ECOLI -            441   4.5e-05   22.6   1.4   2   2   9.1e-05     0.056   12.5   0.3    38    67   160   189   152   252 0.89 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Thi4                 PF01946.12   230 sp|P77212|RCLA_ECOLI -            441   0.00021   20.4   0.2   1   2   3.6e-06    0.0022   17.1   0.0    20    57     6    43     1    73 0.84 Thi4 family
NAD_binding_8        PF13450.1     68 sp|P77212|RCLA_ECOLI -            441   0.00027   20.9   1.0   1   2   0.00015     0.091   12.7   0.1     1    33     8    41     8    71 0.89 NAD(P)-binding Rossmann-like domain
XdhC_C               PF13478.1    136 sp|P77212|RCLA_ECOLI -            441   0.00028   21.2   0.2   1   2   0.00083      0.51   10.6   0.0     2    47     7    53     6    81 0.75 XdhC Rossmann domain
UDPG_MGDP_dh_N       PF03721.9    185 sp|P77212|RCLA_ECOLI -            441   0.00067   19.0   1.7   2   2   0.00011     0.068   12.5   0.2     4    30   162   188   160   193 0.91 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
TrkA_N               PF02254.13   116 sp|P77212|RCLA_ECOLI -            441    0.0011   18.9   0.8   1   2   7.4e-05     0.045   13.7   0.0     2    31     7    36     6    40 0.91 TrkA-N domain
NAD_Gly3P_dh_N       PF01210.18   157 sp|P77212|RCLA_ECOLI -            441    0.0017   18.0   0.1   1   2    0.0011      0.69    9.6   0.1     3    73     7    74     5    93 0.63 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
FAD_binding_2        PF00890.19   417 sp|P77212|RCLA_ECOLI -            441    0.0019   17.1   3.2   1   2   4.8e-06     0.003   16.4   0.2     2    41     6    45     5    69 0.89 FAD binding domain
FAD_binding_3        PF01494.14   356 sp|P77212|RCLA_ECOLI -            441     0.002   17.2   0.5   1   2   4.8e-05      0.03   13.3   0.1     2    35     4    37     3    42 0.91 FAD binding domain
ApbA                 PF02558.11   151 sp|P77212|RCLA_ECOLI -            441    0.0062   15.9   1.2   1   2   6.8e-05     0.042   13.2   0.0     2    31     7    36     6    81 0.86 Ketopantoate reductase PanE/ApbA
Lycopene_cycl        PF05834.7    374 sp|P77212|RCLA_ECOLI -            441     0.014   14.2   2.9   1   2   0.00027      0.17   10.7   0.1     3    36     7    38     5    43 0.90 Lycopene cyclase protein
NAD_binding_2        PF03446.10   163 sp|P77212|RCLA_ECOLI -            441     0.069   12.9   0.1   1   1   0.00066      0.41   10.4   0.0     6    36     8    38     3    97 0.76 NAD binding domain of 6-phosphogluconate dehydrogenase
F420_oxidored        PF03807.12    96 sp|P77212|RCLA_ECOLI -            441      0.13   12.7   7.1   1   2    0.0012      0.74   10.2   0.2     3    31     7    32     5    65 0.84 NADP oxidoreductase coenzyme F420-dependent
AdoHcyase_NAD        PF00670.16   162 sp|P77212|RCLA_ECOLI -            441      0.53   10.1   0.0   1   1   0.00086      0.53   10.1   0.0    25    53     5    33     1   104 0.86 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
DUF1471              PF07338.8     56 sp|P75687|RCLB_ECOLI -             78   3.7e-09   36.0   0.2   1   1   3.4e-13     5e-09   35.6   0.2     7    56    30    78    28    78 0.97 Protein of unknown function (DUF1471)
DUF3315              PF11776.3     52 sp|P64534|RCNB_ECOLI -            112     7e-23   79.9   0.2   1   1   7.5e-27   1.1e-22   79.2   0.2     1    51    52   102    52   103 0.98 Domain of unknown function (DUF3315)
NicO                 PF03824.11   282 sp|P76425|RCNA_ECOLI -            274   7.2e-59  199.4  21.1   1   1   2.2e-62   8.1e-59  199.2  21.1     1   280    13   273    13   274 0.94 High-affinity nickel-transport protein
DsbD_2               PF13386.1    199 sp|P76425|RCNA_ECOLI -            274   9.2e-08   32.0  17.6   2   3   5.7e-11   2.1e-07   30.8   1.4   104   186   154   240   138   249 0.86 Cytochrome C biogenesis protein transmembrane region
DUF2910              PF11139.3    214 sp|P76425|RCNA_ECOLI -            274   2.3e-07   30.1   0.5   1   1   1.1e-10     4e-07   29.3   0.5    36   213    55   269    20   270 0.86 Protein of unknown function (DUF2910)
Trns_repr_metal      PF02583.12    85 sp|P64530|RCNR_ECOLI -             90   6.7e-24   83.8   2.8   1   1     5e-28   7.4e-24   83.7   2.8     2    85     6    88     5    88 0.96 Metal-sensitive transcriptional repressor
GerE                 PF00196.14    58 sp|P0DMC9|RCSA_ECOLI -            207   3.5e-19   67.8   1.4   1   1   9.3e-23   6.9e-19   66.9   1.4     3    57   137   191   135   192 0.96 Bacterial regulatory proteins, luxR family
DUF3568              PF12092.3    131 sp|P0DMC9|RCSA_ECOLI -            207    0.0087   15.7   0.3   1   1   2.2e-06     0.016   14.9   0.3    49   106   143   200   135   205 0.92 Protein of unknown function (DUF3568)
Response_reg         PF00072.19   112 sp|P0DMC7|RCSB_ECOLI -            216   1.8e-24   85.8   0.1   1   1   1.5e-27   3.3e-24   85.0   0.1     1   111     6   120     6   121 0.96 Response regulator receiver domain
GerE                 PF00196.14    58 sp|P0DMC7|RCSB_ECOLI -            216   7.6e-19   66.7   0.1   1   1   5.9e-22   1.2e-18   66.0   0.1     2    57   149   204   148   205 0.96 Bacterial regulatory proteins, luxR family
Sigma70_r4_2         PF08281.7     54 sp|P0DMC7|RCSB_ECOLI -            216   4.4e-05   22.8   0.3   1   1   6.1e-08   0.00013   21.3   0.2    10    54   150   193   149   193 0.95 Sigma-70, region 4
Sigma70_r4           PF04545.11    50 sp|P0DMC7|RCSB_ECOLI -            216   0.00011   21.3   0.1   1   1   1.2e-07   0.00026   20.2   0.1     4    48   150   193   149   194 0.95 Sigma-70, region 4
HTH_38               PF13936.1     44 sp|P0DMC7|RCSB_ECOLI -            216   0.00013   21.4   0.0   1   1   1.3e-07   0.00028   20.3   0.0     3    38   149   183   149   184 0.92 Helix-turn-helix domain
HTH_23               PF13384.1     50 sp|P0DMC7|RCSB_ECOLI -            216    0.0021   17.6   0.0   1   1   3.4e-06    0.0072   15.9   0.0     9    35   157   183   155   195 0.93 Homeodomain-like domain
Terminase_5          PF06056.7     58 sp|P0DMC7|RCSB_ECOLI -            216       0.1   12.1   0.0   1   1   8.8e-05      0.19   11.3   0.0     8    34   160   186   156   189 0.89 Putative ATPase subunit of terminase (gpP-like)
RcsC                 PF09456.5     92 sp|P0DMC5|RCSC_ECOLI -            949   1.8e-38  130.0   0.0   1   1   1.7e-41   5.1e-38  128.6   0.0     1    92   708   799   708   799 0.99 RcsC Alpha-Beta-Loop (ABL)
HATPase_c            PF02518.21   111 sp|P0DMC5|RCSC_ECOLI -            949   4.9e-33  113.1   0.0   1   1   3.3e-36   9.9e-33  112.1   0.0     1   110   581   690   581   691 0.99 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Response_reg         PF00072.19   112 sp|P0DMC5|RCSC_ECOLI -            949   1.4e-29  102.3   0.1   1   1   1.3e-32   3.8e-29  100.9   0.1     1   111   827   936   827   937 0.98 Response regulator receiver domain
HisKA                PF00512.20    68 sp|P0DMC5|RCSC_ECOLI -            949   1.4e-17   63.4   0.0   1   1   1.6e-20   4.8e-17   61.7   0.0     1    67   469   533   469   534 0.97 His Kinase A (phospho-acceptor) domain
HATPase_c_3          PF13589.1    137 sp|P0DMC5|RCSC_ECOLI -            949      0.15   11.7   0.0   1   1    0.0001      0.31   10.6   0.0     2    62   585   645   584   665 0.74 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
LPAM_1               PF08139.7     25 sp|P69411|RCSF_ECOLI -            134      0.17   12.1   3.0   1   1   2.1e-05      0.31   11.3   3.0     9    24     2    17     1    17 0.91 Prokaryotic membrane lipoprotein lipid attachment site
Hpt                  PF01627.18    90 sp|P39838|RCSD_ECOLI -            890   2.6e-13   49.7   0.0   2   2   8.7e-16   4.3e-12   45.8   0.0     3    83   811   885   809   890 0.89 Hpt domain
HATPase_c            PF02518.21   111 sp|P39838|RCSD_ECOLI -            890   3.6e-11   42.7   0.0   1   1   1.9e-14   9.2e-11   41.4   0.0     1   109   565   675   565   677 0.95 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3          PF13589.1    137 sp|P39838|RCSD_ECOLI -            890     0.076   12.6   0.0   1   1   4.1e-05       0.2   11.2   0.0    21    64   589   635   553   679 0.80 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Ham1p_like           PF01725.11   189 sp|P52061|RDGB_ECOLI -            197   1.9e-64  216.5   0.0   1   1   1.4e-68   2.1e-64  216.3   0.0     1   188     4   193     4   194 0.97 Ham1 family
RdgC                 PF04381.7    301 sp|P36767|RDGC_ECOLI -            303    3e-134  446.7   2.6   1   1  2.4e-138  3.5e-134  446.4   2.6     1   300     2   301     2   302 1.00 Putative exonuclease, RdgC
APH                  PF01636.18   239 sp|P0C0K3|RDOA_ECOLI -            328   2.3e-41  142.1   2.0   1   1   4.8e-45   3.5e-41  141.4   2.0     2   232    31   259    30   269 0.84 Phosphotransferase enzyme family
EcKinase             PF02958.15   294 sp|P0C0K3|RDOA_ECOLI -            328   7.8e-05   21.9   0.0   1   1   1.8e-08   0.00014   21.1   0.0   198   281   176   252   150   257 0.79 Ecdysteroid kinase
RecA                 PF00154.16   323 sp|P0A7G6|RECA_ECOLI -            353  1.1e-173  576.7   2.4   1   1  1.5e-176  1.2e-173  576.5   2.4     1   320     9   327     9   330 0.99 recA bacterial DNA recombination protein
KaiC                 PF06745.8    227 sp|P0A7G6|RECA_ECOLI -            353     5e-10   38.8   0.3   1   1   1.1e-11   9.2e-09   34.7   0.3     2   188    42   229    41   275 0.70 KaiC
Rad51                PF08423.6    256 sp|P0A7G6|RECA_ECOLI -            353   1.5e-09   37.1   0.2   1   1   3.4e-12   2.8e-09   36.2   0.2    15   222    36   228    22   269 0.76 Rad51
AAA_25               PF13481.1    194 sp|P0A7G6|RECA_ECOLI -            353   3.9e-08   32.9   0.4   1   1   1.3e-10   1.1e-07   31.5   0.4    13   175    39   179    30   191 0.74 AAA domain
Arch_ATPase          PF01637.13   234 sp|P0A7G6|RECA_ECOLI -            353   0.00097   18.8   0.0   1   1   2.7e-06    0.0022   17.7   0.0    21    58    61    98    58   193 0.84 Archaeal ATPase
AAA_35               PF14516.1    331 sp|P0A7G6|RECA_ECOLI -            353    0.0024   16.5   0.0   1   1   4.7e-06    0.0039   15.8   0.0    31    72    60   101    57   118 0.90 AAA-like domain
AAA_24               PF13479.1    213 sp|P0A7G6|RECA_ECOLI -            353    0.0032   17.1   0.0   1   1   7.3e-06     0.006   16.1   0.0     7    81    64   151    60   197 0.79 AAA domain
MobB                 PF03205.9    140 sp|P0A7G6|RECA_ECOLI -            353    0.0064   16.2   0.0   1   1   1.7e-05     0.014   15.1   0.0     2    39    62    98    61   102 0.88 Molybdopterin guanine dinucleotide synthesis protein B
AAA_22               PF13401.1    131 sp|P0A7G6|RECA_ECOLI -            353    0.0094   16.0   0.0   1   1   2.7e-05     0.022   14.8   0.0     5   101    61   153    59   193 0.75 AAA domain
PAXNEB               PF05625.6    363 sp|P0A7G6|RECA_ECOLI -            353     0.018   13.8   0.2   1   1   3.5e-05     0.029   13.2   0.2    29    53    40    65    32    73 0.89 PAXNEB protein
CbiA                 PF01656.18   195 sp|P0A7G6|RECA_ECOLI -            353     0.025   13.9   0.5   1   1   0.00014      0.12   11.8   0.4    10   106    71   150    65   179 0.68 CobQ/CobB/MinD/ParA nucleotide binding domain
AAA_14               PF13173.1    128 sp|P0A7G6|RECA_ECOLI -            353     0.026   14.4   0.0   1   1   8.1e-05     0.067   13.1   0.0     3    41    61   100    59   147 0.79 AAA domain
AAA_16               PF13191.1    185 sp|P0A7G6|RECA_ECOLI -            353     0.027   14.4   0.0   1   1   5.4e-05     0.045   13.7   0.0    24    88    60   121    48   197 0.57 AAA ATPase domain
AAA                  PF00004.24   132 sp|P0A7G6|RECA_ECOLI -            353     0.035   14.3   0.0   1   1   8.8e-05     0.073   13.2   0.0     3   106    65   191    63   200 0.60 ATPase family associated with various cellular activities (AAA)
Ribosomal_S24e       PF01282.14    84 sp|P0A7G6|RECA_ECOLI -            353     0.038   13.7   0.8   2   2   0.00046      0.38   10.5   0.1    41    68   298   325   294   327 0.93 Ribosomal protein S24e
CobU                 PF02283.11   167 sp|P0A7G6|RECA_ECOLI -            353     0.039   13.3   0.0   1   1   8.8e-05     0.072   12.4   0.0     3   124    65   196    63   209 0.85 Cobinamide kinase / cobinamide phosphate guanyltransferase
TK                   PF00265.13   176 sp|P0A7G6|RECA_ECOLI -            353     0.045   13.3   0.0   1   1   9.1e-05     0.075   12.5   0.0     3    85    62   147    60   158 0.70 Thymidine kinase
cobW                 PF02492.14   178 sp|P0A7G6|RECA_ECOLI -            353     0.056   12.8   0.1   1   1   0.00015      0.12   11.8   0.1     4    99    64   153    61   172 0.80 CobW/HypB/UreG, nucleotide-binding domain
UvrD-helicase        PF00580.16   315 sp|P08394|RECB_ECOLI -           1180   1.3e-70  238.2   0.0   1   1   1.1e-73   2.1e-70  237.5   0.0     8   314    10   437     4   438 0.90 UvrD/REP helicase N-terminal domain
UvrD_C               PF13361.1    351 sp|P08394|RECB_ECOLI -           1180   1.3e-59  202.4   0.0   1   1   5.1e-62   9.5e-59  199.6   0.0     1   347   441   816   441   819 0.93 UvrD-like helicase C-terminal domain
PDDEXK_1             PF12705.2    257 sp|P08394|RECB_ECOLI -           1180   1.2e-07   31.3   2.9   2   2     1e-10   1.9e-07   30.7   0.0    39   200   951  1148   936  1175 0.67 PD-(D/E)XK nuclease superfamily
UvrD_C_2             PF13538.1    104 sp|P08394|RECB_ECOLI -           1180   6.4e-07   29.4   0.2   2   2   1.5e-08   2.8e-05   24.1   0.1    44    97   729   809   686   815 0.80 UvrD-like helicase C-terminal domain
AAA_19               PF13245.1     76 sp|P08394|RECB_ECOLI -           1180   2.7e-05   23.8   0.3   1   1   4.5e-08   8.4e-05   22.2   0.3    14    73    20    81    11    93 0.83 Part of AAA domain
AAA_22               PF13401.1    131 sp|P08394|RECB_ECOLI -           1180    0.0011   19.1   0.1   2   2    0.0005      0.92    9.6   0.0    70   126   349   416   306   419 0.77 AAA domain
AAA_11               PF13086.1    236 sp|P08394|RECB_ECOLI -           1180     0.033   13.7   0.0   1   2   7.5e-05      0.14   11.7   0.0    20   115    19   121     5   288 0.77 AAA domain
AAA_25               PF13481.1    194 sp|P08394|RECB_ECOLI -           1180      0.11   11.9   0.1   1   1    0.0002      0.37   10.1   0.1    30   122    13   106     6   127 0.69 AAA domain
Exonuc_V_gamma       PF04257.9    805 sp|P07648|RECC_ECOLI -           1122         0 1046.8   1.6   1   2         0         0 1046.8   1.6     1   794     1   825     1   840 0.97 Exodeoxyribonuclease V, gamma subunit
DUF3782              PF12644.2     64 sp|P07648|RECC_ECOLI -           1122       0.1   12.3   0.0   1   1   3.9e-05      0.29   10.9   0.0    23    46   476   507   338   511 0.79 Protein of unknown function (DUF3782)
AAA_30               PF13604.1    196 sp|P04993|RECD_ECOLI -            608     5e-28   98.0   0.4   1   1   1.8e-30   1.2e-27   96.7   0.4     8   150   156   318   152   332 0.81 AAA domain
Helicase_RecD        PF05127.9    177 sp|P04993|RECD_ECOLI -            608   9.1e-24   84.0   0.0   1   1   2.7e-26   1.8e-23   83.0   0.0     1   176   168   354   168   355 0.94 Helicase
AAA_19               PF13245.1     76 sp|P04993|RECD_ECOLI -            608   8.9e-17   60.6   5.8   1   1   1.5e-19     1e-16   60.4   2.8     2    76   158   244   155   244 0.85 Part of AAA domain
UvrD_C_2             PF13538.1    104 sp|P04993|RECD_ECOLI -            608   1.1e-16   60.8   0.0   1   1   4.4e-19     3e-16   59.4   0.0     3   103   478   579   476   580 0.78 UvrD-like helicase C-terminal domain
Viral_helicase1      PF01443.13   234 sp|P04993|RECD_ECOLI -            608   7.8e-11   41.9   1.8   1   3    0.0013      0.85    9.0   0.0     2    24   168   189   167   233 0.77 Viral (Superfamily 1) RNA helicase
Viral_helicase1      PF01443.13   234 sp|P04993|RECD_ECOLI -            608   7.8e-11   41.9   1.8   3   3   2.2e-08   1.5e-05   24.6   0.1   184   233   534   580   518   581 0.82 Viral (Superfamily 1) RNA helicase
AAA_11               PF13086.1    236 sp|P04993|RECD_ECOLI -            608   2.2e-10   40.5   1.1   1   2   3.3e-08   2.2e-05   24.1   0.1     5    82   153   231   151   242 0.80 AAA domain
AAA_11               PF13086.1    236 sp|P04993|RECD_ECOLI -            608   2.2e-10   40.5   1.1   2   2     2e-05     0.014   15.0   0.1   191   231   258   303   237   305 0.77 AAA domain
UvrD-helicase        PF00580.16   315 sp|P04993|RECD_ECOLI -            608   2.9e-07   30.1   0.3   1   1   1.1e-09   7.5e-07   28.7   0.3     7    89   158   240   153   247 0.85 UvrD/REP helicase N-terminal domain
AAA_22               PF13401.1    131 sp|P04993|RECD_ECOLI -            608   4.6e-07   30.0   0.0   1   1   1.8e-09   1.2e-06   28.6   0.0     3   110   163   284   159   303 0.68 AAA domain
DUF2075              PF09848.4    352 sp|P04993|RECD_ECOLI -            608   1.5e-06   27.4   0.0   1   2   7.6e-08   5.1e-05   22.4   0.0     2    93   165   272   164   413 0.73 Uncharacterized conserved protein (DUF2075)
PhoH                 PF02562.11   205 sp|P04993|RECD_ECOLI -            608   0.00028   20.2   0.0   1   1   1.5e-06     0.001   18.3   0.0     9   158   154   301   147   311 0.83 PhoH-like protein
AAA_28               PF13521.1    163 sp|P04993|RECD_ECOLI -            608    0.0022   18.0   0.1   1   1   7.5e-06    0.0051   16.7   0.1     3    22   168   187   166   237 0.82 AAA domain
AAA_16               PF13191.1    185 sp|P04993|RECD_ECOLI -            608    0.0027   17.7   1.2   1   1   8.8e-06    0.0059   16.6   0.1    15   119   159   253   148   330 0.63 AAA ATPase domain
FtsK_SpoIIIE         PF01580.13   205 sp|P04993|RECD_ECOLI -            608     0.003   17.0   0.0   1   1   9.8e-06    0.0066   15.9   0.0    42    83   168   209   147   220 0.86 FtsK/SpoIIIE family
MukB                 PF04310.7    227 sp|P04993|RECD_ECOLI -            608     0.012   14.9   0.0   1   1   3.1e-05     0.021   14.1   0.0    13    53   151   190   145   219 0.82 MukB N-terminal
AAA_25               PF13481.1    194 sp|P04993|RECD_ECOLI -            608     0.013   14.9   1.1   1   1   5.8e-05     0.039   13.3   1.1    34    59   165   193   154   276 0.83 AAA domain
T2SE                 PF00437.15   272 sp|P04993|RECD_ECOLI -            608     0.026   13.4   0.0   1   1   7.3e-05     0.049   12.5   0.0   115   152   154   188   112   199 0.69 Type II/IV secretion system protein
SRP54                PF00448.17   196 sp|P04993|RECD_ECOLI -            608     0.039   13.3   0.1   1   1   9.4e-05     0.063   12.7   0.1     4    28   167   191   164   230 0.78 SRP54-type protein, GTPase domain
CbiA                 PF01656.18   195 sp|P04993|RECD_ECOLI -            608     0.053   12.9   0.3   1   1   0.00015       0.1   12.0   0.3     1    25   166   190   166   196 0.92 CobQ/CobB/MinD/ParA nucleotide binding domain
Herpes_Helicase      PF02689.9    819 sp|P04993|RECD_ECOLI -            608     0.058   11.1   0.0   2   2    0.0014      0.93    7.1   0.0   742   785   534   579   531   597 0.84 Helicase
NTPase_1             PF03266.10   168 sp|P04993|RECD_ECOLI -            608     0.092   12.4   0.2   1   1   0.00043      0.29   10.8   0.2     3    23   168   188   166   196 0.90 NTPase
AAA_18               PF13238.1    129 sp|P04993|RECD_ECOLI -            608      0.14   12.4   0.0   1   1   0.00046      0.31   11.3   0.0     2    22   168   188   168   249 0.74 AAA domain
AAA_17               PF13207.1    121 sp|P04993|RECD_ECOLI -            608      0.36   11.6   2.5   1   1   0.00079      0.53   11.1   1.3     3    22   168   187   166   331 0.87 AAA domain
SMC_N                PF02463.14   220 sp|P0A7H0|RECF_ECOLI -            357   3.4e-41  140.8   0.0   1   1   2.2e-44   4.1e-41  140.6   0.0     2   218     3   354     2   356 0.97 RecF/RecN/SMC N terminal domain
AAA_23               PF13476.1    202 sp|P0A7H0|RECF_ECOLI -            357   1.8e-09   38.2   0.0   1   1   1.6e-12     3e-09   37.4   0.0     1    88     5   143     5   250 0.63 AAA domain
AAA_21               PF13304.1    303 sp|P0A7H0|RECF_ECOLI -            357   1.7e-07   31.4   0.0   1   2   1.1e-09   2.1e-06   27.9   0.0     1    35    25    61    25   100 0.70 AAA domain
AAA_15               PF13175.1    415 sp|P0A7H0|RECF_ECOLI -            357   2.2e-06   26.9   0.0   1   1   1.6e-09   2.9e-06   26.6   0.0     2    43     4    49     3    95 0.83 AAA ATPase domain
AAA_16               PF13191.1    185 sp|P0A7H0|RECF_ECOLI -            357   2.4e-05   24.3   1.0   1   2   9.9e-05      0.18   11.7   0.0    22    46    21    45    11    79 0.84 AAA ATPase domain
AAA_16               PF13191.1    185 sp|P0A7H0|RECF_ECOLI -            357   2.4e-05   24.3   1.0   2   2   0.00024      0.44   10.4   0.4   119   184   243   329   130   330 0.53 AAA ATPase domain
AAA_29               PF13555.1     62 sp|P0A7H0|RECF_ECOLI -            357   0.00026   20.4   0.0   1   1   5.5e-07     0.001   18.5   0.0    15    46    15    46     9    54 0.80 P-loop containing region of AAA domain
ABC_tran             PF00005.22   137 sp|P0A7H0|RECF_ECOLI -            357    0.0029   17.9   0.1   1   2   1.1e-05     0.021   15.1   0.0    15    35    27    47    15    91 0.87 ABC transporter
AAA_13               PF13166.1    712 sp|P0A7H0|RECF_ECOLI -            357     0.087   11.2   0.0   1   1   7.8e-05      0.14   10.5   0.0     9    42    16    49     8    80 0.79 AAA domain
DEAD                 PF00270.24   169 sp|P24230|RECG_ECOLI -            693     3e-24   85.4   0.2   1   2   2.6e-25   3.2e-22   78.8   0.1     4   165   273   434   270   438 0.80 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|P24230|RECG_ECOLI -            693   5.3e-17   61.4   0.0   2   2   4.1e-18   5.1e-15   55.1   0.0     2    77   512   588   511   589 0.95 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|P24230|RECG_ECOLI -            693   8.3e-09   35.5   0.0   1   1   1.8e-11   2.2e-08   34.1   0.0    29   182   293   430   267   432 0.75 Type III restriction enzyme, res subunit
tRNA_anti-codon      PF01336.20    75 sp|P24230|RECG_ECOLI -            693   5.3e-07   29.3   0.0   1   1   9.1e-10   1.1e-06   28.3   0.0     2    73    63   134    62   136 0.96 OB-fold nucleic acid binding domain
SecA_DEAD            PF07517.9    266 sp|P24230|RECG_ECOLI -            693   5.6e-07   29.1   0.0   1   1   9.9e-10   1.2e-06   28.0   0.0    95   163   294   362   227   398 0.84 SecA DEAD-like domain
SNF2_N               PF00176.18   299 sp|P24230|RECG_ECOLI -            693   2.2e-05   23.4   0.0   1   1     3e-08   3.7e-05   22.6   0.0    33   178   297   436   289   443 0.72 SNF2 family N-terminal domain
AAA_19               PF13245.1     76 sp|P24230|RECG_ECOLI -            693   5.3e-05   22.8   0.8   1   1   1.3e-07   0.00016   21.3   0.5    14    56   293   331   283   348 0.84 Part of AAA domain
AAA_30               PF13604.1    196 sp|P24230|RECG_ECOLI -            693    0.0004   20.0   1.6   1   1     6e-06    0.0074   15.8   1.6    19   115   290   412   278   420 0.67 AAA domain
DUF2075              PF09848.4    352 sp|P24230|RECG_ECOLI -            693    0.0032   16.4   0.0   1   1   3.8e-06    0.0047   15.9   0.0     4    97   292   404   289   428 0.72 Uncharacterized conserved protein (DUF2075)
Helicase_RecD        PF05127.9    177 sp|P24230|RECG_ECOLI -            693      0.03   13.9   0.1   1   1   9.8e-05      0.12   11.9   0.1     2    99   294   399   293   416 0.78 Helicase
IstB_IS21            PF01695.12   178 sp|P24230|RECG_ECOLI -            693     0.062   12.7   0.0   1   1   0.00012      0.15   11.4   0.0    29    89   271   331   252   342 0.82 IstB-like ATP binding protein
Zot                  PF05707.7    193 sp|P24230|RECG_ECOLI -            693      0.16   11.4   0.1   1   1   0.00029      0.36   10.2   0.1     1    53   290   342   290   409 0.63 Zonular occludens toxin (Zot)
DHH                  PF01368.15   145 sp|P21893|RECJ_ECOLI -            577   4.8e-20   71.6   0.0   1   1   1.9e-23     7e-20   71.1   0.0     3   145    69   234    67   234 0.88 DHH family
DHHA1                PF02272.14    68 sp|P21893|RECJ_ECOLI -            577   3.2e-15   55.5   0.0   1   1   1.7e-18   6.4e-15   54.6   0.0     1    66   382   449   382   451 0.94 DHHA1 domain
PEP-utilizers        PF00391.18    81 sp|P21893|RECJ_ECOLI -            577    0.0064   16.0   0.5   1   1   4.7e-06     0.017   14.6   0.2    20    59   117   158   115   174 0.92 PEP-utilising enzyme, mobile domain
NIF3                 PF01784.13   242 sp|P21893|RECJ_ECOLI -            577       0.2   11.2   0.1   1   1    0.0001      0.38   10.2   0.1   178   221   116   162   112   164 0.91 NIF3 (NGG1p interacting factor 3)
SMC_N                PF02463.14   220 sp|P05824|RECN_ECOLI -            553   8.2e-19   67.7   0.0   1   1   1.1e-21   1.7e-18   66.6   0.0     1   217     1   511     1   514 0.94 RecF/RecN/SMC N terminal domain
AAA_23               PF13476.1    202 sp|P05824|RECN_ECOLI -            553   1.9e-18   67.5   4.3   1   1   6.4e-19   9.6e-16   58.7   4.3     1   195     4   215     4   381 0.47 AAA domain
AAA_29               PF13555.1     62 sp|P05824|RECN_ECOLI -            553   1.4e-05   24.5   0.0   1   1     2e-08     3e-05   23.4   0.0     2    49     3    48     2    58 0.79 P-loop containing region of AAA domain
AAA_21               PF13304.1    303 sp|P05824|RECN_ECOLI -            553   0.00019   21.5   0.0   1   2   0.00024      0.35   10.7   0.0     1    24    24    47    24    75 0.83 AAA domain
AAA_15               PF13175.1    415 sp|P05824|RECN_ECOLI -            553   0.00043   19.4   0.0   1   1   4.3e-07   0.00064   18.8   0.0     3    42     4    42     2    69 0.88 AAA ATPase domain
AAA_22               PF13401.1    131 sp|P05824|RECN_ECOLI -            553    0.0072   16.4   5.2   1   3   9.5e-06     0.014   15.5   0.1     3    39    21    58    16   178 0.84 AAA domain
NTPase_P4            PF11602.3    320 sp|P05824|RECN_ECOLI -            553     0.015   14.2   0.0   1   1   1.6e-05     0.024   13.6   0.0   108   129    19    40     6    63 0.74 ATPase P4 of dsRNA bacteriophage phi-12
TMPIT                PF07851.8    330 sp|P05824|RECN_ECOLI -            553     0.025   13.6   3.2   1   2   0.00042      0.62    9.0   0.1     5    81   206   281   203   311 0.75 TMPIT-like protein
DUF3893              PF13032.1    139 sp|P05824|RECN_ECOLI -            553       0.1   12.6   0.8   1   1   0.00015      0.22   11.6   0.8    37    96   325   385   301   396 0.82 Domain of unknown function (DUF3893)
RecO_N               PF11967.3     80 sp|P0A7H3|RECO_ECOLI -            242   4.9e-24   83.9   0.0   1   1   1.7e-27   8.2e-24   83.2   0.0     5    78     4    76     1    78 0.95 Recombination protein O N terminal
RecO_C               PF02565.10   118 sp|P0A7H3|RECO_ECOLI -            242   3.7e-20   71.9   0.0   1   1   9.7e-24   4.8e-20   71.5   0.0     3   118    82   226    80   226 0.91 Recombination protein O C terminal
RecO_N_2             PF13114.1     71 sp|P0A7H3|RECO_ECOLI -            242     0.092   12.4   0.0   1   1   3.2e-05      0.16   11.7   0.0     3    38     7    44     5    76 0.85 RecO N terminal
RQC                  PF09382.5    106 sp|P15043|RECQ_ECOLI -            609   4.7e-28   96.9   0.0   1   1   5.9e-31   1.3e-27   95.6   0.0     1   104   411   512   411   514 0.97 RQC domain
Helicase_C           PF00271.26    78 sp|P15043|RECQ_ECOLI -            609   4.5e-24   84.1   0.1   2   3   4.2e-24   8.9e-21   73.5   0.1     3    78   256   331   254   331 0.98 Helicase conserved C-terminal domain
HRDC                 PF00570.18    68 sp|P15043|RECQ_ECOLI -            609   7.3e-24   83.2   0.1   1   1   9.6e-27     2e-23   81.8   0.0     2    68   533   599   532   599 0.97 HRDC domain
DEAD                 PF00270.24   169 sp|P15043|RECQ_ECOLI -            609   3.7e-21   75.3   0.0   1   2   8.7e-24   1.8e-20   73.0   0.0     2   164    28   187    27   192 0.85 DEAD/DEAH box helicase
ResIII               PF04851.10   184 sp|P15043|RECQ_ECOLI -            609    0.0004   20.2   0.0   1   1   7.9e-07    0.0017   18.2   0.0     3    90    25   102    24   185 0.71 Type III restriction enzyme, res subunit
Helicase_Sgs1        PF11408.3     80 sp|P15043|RECQ_ECOLI -            609     0.055   13.3   0.1   1   1   5.9e-05      0.12   12.1   0.1     7    64   534   591   532   601 0.88 Sgs1 RecQ helicase
zf-CXXC              PF02008.15    48 sp|P15043|RECQ_ECOLI -            609     0.096   12.5   0.3   1   1   0.00012      0.25   11.1   0.3    17    33   393   409   392   418 0.75 CXXC zinc finger domain
Toprim_4             PF13662.1     81 sp|P0A7H6|RECR_ECOLI -            201   2.7e-22   78.5   0.0   1   1   1.7e-25   4.2e-22   77.9   0.0     1    81    81   172    81   172 0.95 Toprim domain
RecR                 PF02132.10    41 sp|P0A7H6|RECR_ECOLI -            201   5.1e-16   57.8   1.1   1   1     2e-19   5.1e-16   57.8   1.1     2    41    39    78    38    78 0.95 RecR protein
Toprim               PF01751.17   100 sp|P0A7H6|RECR_ECOLI -            201   2.1e-09   37.2   0.0   1   1   1.8e-12   4.3e-09   36.2   0.0     2    90    83   167    82   174 0.83 Toprim domain
FYVE_2               PF02318.11   118 sp|P0A7H6|RECR_ECOLI -            201     0.028   14.3   0.4   1   2   4.9e-05      0.12   12.2   0.3    62    99    45    86    27   100 0.79 FYVE-type zinc finger
HHH                  PF00633.18    30 sp|P0A7H6|RECR_ECOLI -            201      0.09   12.5   0.8   1   1   0.00016       0.4   10.4   0.0    16    25    17    26     8    27 0.83 Helix-hairpin-helix motif
RecX                 PF02631.11   122 sp|P33596|RECX_ECOLI -            166   2.4e-32  111.6   0.4   2   2   7.5e-36   5.5e-32  110.5   0.1     6   117    51   162    46   166 0.94 RecX family
HTH_21               PF13276.1     60 sp|P33596|RECX_ECOLI -            166     0.057   13.4   0.8   1   1   1.6e-05      0.12   12.4   0.2    11    52    77   115    57   128 0.87 HTH-like domain
RelB                 PF04221.7     83 sp|P0C079|RELB_ECOLI -             79   3.5e-28   97.1   0.1   1   1   5.1e-32   3.8e-28   97.0   0.1     1    82     1    78     1    79 0.95 RelB antitoxin
RelA_SpoT            PF04607.12   116 sp|P0AG20|RELA_ECOLI -            744   9.2e-38  128.8   0.2   1   1   1.6e-40     3e-37  127.1   0.0     1   114   251   360   251   362 0.98 Region found in RelA / SpoT proteins
HD_4                 PF13328.1    153 sp|P0AG20|RELA_ECOLI -            744   1.6e-34  118.8   0.8   1   1   2.2e-37   4.1e-34  117.5   0.8    15   152    50   191    35   192 0.91 HD domain
TGS                  PF02824.16    60 sp|P0AG20|RELA_ECOLI -            744   1.6e-23   82.3   0.1   1   1   3.7e-26   6.9e-23   80.2   0.0     1    60   406   465   406   465 0.99 TGS domain
ACT_4                PF13291.1     80 sp|P0AG20|RELA_ECOLI -            744   1.7e-18   66.7   1.3   1   1   2.2e-21     4e-18   65.5   1.3     4    80   664   740   662   740 0.97 ACT domain
ACT                  PF01842.20    66 sp|P0AG20|RELA_ECOLI -            744   8.1e-09   34.7   0.3   1   1   4.3e-12   8.1e-09   34.7   0.3     2    65   668   733   667   734 0.97 ACT domain
Prok-JAB             PF14464.1    105 sp|P0AG20|RELA_ECOLI -            744     0.016   14.7   0.0   1   1     3e-05     0.055   13.0   0.0     3    83   227   312   225   339 0.78 Prokaryotic homologs of the JAB domain
ACT_6                PF13740.1     76 sp|P0AG20|RELA_ECOLI -            744     0.033   13.8   0.1   1   1   5.4e-05     0.099   12.3   0.1     3    32   667   696   665   699 0.94 ACT domain
Plasmid_stabil       PF05016.9     90 sp|P0C077|RELE_ECOLI -             95   6.9e-12   45.5   0.2   1   1   1.1e-15   7.9e-12   45.4   0.2     2    88     6    83     5    85 0.94 Plasmid stabilisation system protein
DUF3788              PF12663.2    133 sp|P0C077|RELE_ECOLI -             95   0.00082   19.0   0.1   1   1   1.6e-07    0.0012   18.5   0.1    20    88    21    89     6    94 0.76 Protein of unknown function (DUF3788)
UvrD_C               PF13361.1    351 sp|P09980|REP_ECOLI  -            673   3.6e-97  325.9   0.0   2   2   1.5e-99   2.4e-96  323.2   0.0     1   350   271   613   271   614 0.97 UvrD-like helicase C-terminal domain
UvrD-helicase        PF00580.16   315 sp|P09980|REP_ECOLI  -            673   2.5e-73  247.1   0.3   1   1   2.3e-75   3.8e-72  243.2   0.3     1   314     3   265     3   266 0.94 UvrD/REP helicase N-terminal domain
AAA_19               PF13245.1     76 sp|P09980|REP_ECOLI  -            673   3.2e-13   49.2   0.6   1   1   4.8e-16   7.8e-13   47.9   0.6     8    75    15    87     8    88 0.81 Part of AAA domain
UvrD_C_2             PF13538.1    104 sp|P09980|REP_ECOLI  -            673   2.3e-10   40.5   0.0   1   1   8.4e-13   1.4e-09   38.0   0.0    54   103   546   609   496   610 0.80 UvrD-like helicase C-terminal domain
AAA_30               PF13604.1    196 sp|P09980|REP_ECOLI  -            673   1.3e-08   34.7   0.9   1   2   5.8e-09   9.5e-06   25.3   0.2     1    67     2    68     2    86 0.81 AAA domain
Viral_helicase1      PF01443.13   234 sp|P09980|REP_ECOLI  -            673   4.1e-06   26.4   0.3   3   3   5.7e-05     0.095   12.2   0.0   165   232   524   609   496   611 0.73 Viral (Superfamily 1) RNA helicase
Exonuc_V_gamma       PF04257.9    805 sp|P09980|REP_ECOLI  -            673    0.0036   15.3   0.0   1   1   5.3e-06    0.0087   14.0   0.0   514   667   432   589   420   597 0.67 Exodeoxyribonuclease V, gamma subunit
AAA_16               PF13191.1    185 sp|P09980|REP_ECOLI  -            673     0.021   14.8   0.1   1   1   3.5e-05     0.057   13.3   0.1    26   176    17   233     8   240 0.58 AAA ATPase domain
DEAD                 PF00270.24   169 sp|P09980|REP_ECOLI  -            673     0.059   12.8   0.0   1   1   0.00015      0.24   10.8   0.0     2   102     5   233     4   244 0.71 DEAD/DEAH box helicase
Antiterm             PF03589.8     95 sp|P76161|REQ2_ECOLI -            250   7.2e-51  170.2   0.6   1   3   1.2e-21     6e-18   64.7   0.0     2    95    15   107    14   107 0.92 Antitermination protein
Antiterm             PF03589.8     95 sp|P76161|REQ2_ECOLI -            250   7.2e-51  170.2   0.6   3   3   1.5e-32   7.3e-29   99.7   0.1     2    95   155   247   154   247 0.98 Antitermination protein
DnaJ_CXXCXGXG        PF00684.14    66 sp|P76161|REQ2_ECOLI -            250   4.7e-09   36.1   9.7   1   2   0.00011      0.54   10.3   0.0    11    31   106   126   101   138 0.74 DnaJ central domain
DnaJ_CXXCXGXG        PF00684.14    66 sp|P76161|REQ2_ECOLI -            250   4.7e-09   36.1   9.7   2   2   1.2e-09   5.9e-06   26.2   7.0     1    51   148   194   148   200 0.94 DnaJ central domain
zf-C4pol             PF14260.1     73 sp|P76161|REQ2_ECOLI -            250      0.15   12.1   5.1   1   2   0.00013      0.62   10.1   2.7    13    62   110   162   102   166 0.79 C4-type zinc-finger of DNA polymerase delta
Phage_antitermQ      PF06530.7    126 sp|Q47274|REQ1_ECOLI -            127   7.2e-56  187.1   0.6   1   1   1.1e-59     8e-56  187.0   0.6     1   125     1   125     1   126 0.99 Phage antitermination protein Q
DUF1133              PF06576.6    176 sp|Q47274|REQ1_ECOLI -            127     0.011   14.9   0.1   1   1   2.3e-06     0.017   14.3   0.0    76   135    26    83    17   111 0.86 Protein of unknown function (DUF1133)
PCRF                 PF03462.13   116 sp|P0A7I0|RF1_ECOLI  -            360   2.8e-43  146.2   0.4   1   1   1.3e-46   6.5e-43  145.1   0.4     3   116    65   178    63   178 0.98 PCRF domain
RF-1                 PF00472.15   114 sp|P0A7I0|RF1_ECOLI  -            360   3.5e-39  133.1   0.0   2   2     7e-43   3.5e-39  133.1   0.0     9   114   216   321   208   321 0.97 RF-1 domain
Mnd1                 PF03962.10   188 sp|P0A7I0|RF1_ECOLI  -            360       3.2    7.3  11.4   1   2     2e-05     0.099   12.2   4.6    66   128    37    99    29   111 0.83 Mnd1 family
RF-1                 PF00472.15   114 sp|P07012|RF2_ECOLI  -            365   3.4e-39  133.1   1.1   1   1   3.1e-42   6.5e-39  132.2   1.1     2   114   226   337   225   337 0.98 RF-1 domain
PCRF                 PF03462.13   116 sp|P07012|RF2_ECOLI  -            365     2e-34  117.7   1.8   1   2   9.3e-38     2e-34  117.7   1.8     5   116    88   195    85   195 0.96 PCRF domain
DUF2408              PF10303.4    134 sp|P07012|RF2_ECOLI  -            365      0.25   11.4   0.1   1   2   0.00012      0.25   11.4   0.1     5    67    66   127    58   143 0.78 Protein of unknown function (DUF2408)
GTP_EFTU             PF00009.22   188 sp|P0A7I4|RF3_ECOLI  -            529   9.7e-45  152.3   0.0   1   1   6.1e-48   1.5e-44  151.6   0.0     3   187    13   277    11   278 0.92 Elongation factor Tu GTP binding domain
GTP_EFTU_D2          PF03144.20    74 sp|P0A7I4|RF3_ECOLI  -            529   2.9e-11   43.3   0.1   1   1   5.1e-14   1.3e-10   41.2   0.1     2    74   314   380   313   380 0.97 Elongation factor Tu domain 2
MMR_HSR1             PF01926.18   116 sp|P0A7I4|RF3_ECOLI  -            529   9.4e-05   22.3   0.0   1   1     7e-08   0.00017   21.4   0.0     2   116    16   143    15   143 0.63 50S ribosome-binding GTPase
EFG_II               PF14492.1     75 sp|P0A7I4|RF3_ECOLI  -            529   0.00051   19.8   0.0   1   1     4e-07   0.00099   18.9   0.0     8    72   399   462   394   465 0.86 Elongation Factor G, domain II
Miro                 PF08477.8    119 sp|P0A7I4|RF3_ECOLI  -            529    0.0044   17.5   0.0   1   1   3.5e-06    0.0087   16.5   0.0     4   119    18   145    15   145 0.74 Miro-like protein
Ras                  PF00071.17   162 sp|P0A7I4|RF3_ECOLI  -            529     0.035   13.5   0.0   1   1   2.8e-05     0.069   12.5   0.0    33   115    67   145    47   161 0.74 Ras family
Glyco_transf_9       PF01075.12   247 sp|P24173|RFAC_ECOLI -            319     6e-87  290.9   0.1   1   1     5e-91   7.4e-87  290.6   0.1     1   246    75   316    75   317 0.99 Glycosyltransferase family 9 (heptosyltransferase)
Glycos_transf_1      PF00534.15   172 sp|P25740|RFAG_ECOLI -            374   1.2e-37  128.9   0.0   1   1   5.5e-41   1.6e-37  128.5   0.0     2   171   183   350   182   351 0.98 Glycosyl transferases group 1
Glyco_trans_1_4      PF13692.1    135 sp|P25740|RFAG_ECOLI -            374   1.1e-13   51.5   0.0   1   1   7.2e-17   2.1e-13   50.5   0.0     7   133   201   335   197   337 0.82 Glycosyl transferases group 1
Glyco_trans_4_4      PF13579.1    160 sp|P25740|RFAG_ECOLI -            374   1.6e-06   28.3   0.4   1   2   2.1e-09   6.2e-06   26.4   0.0     1   160    14   168    14   168 0.81 Glycosyl transferase 4-like domain
Glyco_trans_1_2      PF13524.1     92 sp|P25740|RFAG_ECOLI -            374   3.9e-05   23.8   0.0   1   1   4.8e-08   0.00014   22.0   0.0     5    77   277   352   271   360 0.87 Glycosyl transferases group 1
Glyco_transf_4       PF13439.1    177 sp|P25740|RFAG_ECOLI -            374    0.0058   16.3   0.0   1   1   4.5e-06     0.013   15.1   0.0     7   175     9   173     3   174 0.70 Glycosyltransferase Family 4
Glyco_transf_8       PF01501.15   250 sp|P27129|RFAJ_ECOLI -            338   1.1e-55  188.6   1.7   1   1   1.9e-59   1.4e-55  188.3   1.7     2   250    30   276    29   276 0.96 Glycosyl transferase family 8
Glyco_transf_8C      PF08437.5     57 sp|P27129|RFAJ_ECOLI -            338   8.3e-24   83.3   1.3   1   1   2.6e-27   1.9e-23   82.1   1.3     1    57   278   334   278   334 1.00 Glycosyl transferase family 8 C-terminal
Glyco_transf_8       PF01501.15   250 sp|P27128|RFAI_ECOLI -            339   2.9e-54  184.0   0.8   1   1   5.3e-58   3.9e-54  183.6   0.8     2   250    31   277    30   277 0.97 Glycosyl transferase family 8
Glyco_transf_8C      PF08437.5     57 sp|P27128|RFAI_ECOLI -            339   7.4e-23   80.3   4.3   1   1     3e-26   2.2e-22   78.7   4.3     1    57   280   336   280   336 0.99 Glycosyl transferase family 8 C-terminal
Glycos_transf_1      PF00534.15   172 sp|P27127|RFAB_ECOLI -            359   3.2e-29  101.5   0.0   1   1   2.5e-32   5.2e-29  100.8   0.0    11   159   174   323   165   334 0.89 Glycosyl transferases group 1
Glyco_transf_4       PF13439.1    177 sp|P27127|RFAB_ECOLI -            359   4.7e-13   49.2   0.0   1   1   3.6e-16   7.6e-13   48.5   0.0     8   174    10   166     4   167 0.86 Glycosyltransferase Family 4
Glyco_trans_1_4      PF13692.1    135 sp|P27127|RFAB_ECOLI -            359   3.3e-12   46.7   0.0   2   2   3.1e-14   6.5e-11   42.5   0.0     2   131   181   318   180   321 0.79 Glycosyl transferases group 1
Glyco_trans_4_4      PF13579.1    160 sp|P27127|RFAB_ECOLI -            359   1.7e-06   28.2   0.0   1   1   5.5e-09   1.2e-05   25.5   0.0     1   159    14   161    14   162 0.70 Glycosyl transferase 4-like domain
Glyco_trans_4_2      PF13477.1    139 sp|P27127|RFAB_ECOLI -            359   4.1e-06   26.6   0.1   1   1   3.3e-09     7e-06   25.9   0.1     1   115     2   123     2   142 0.80 Glycosyl transferase 4-like
MGDG_synth           PF06925.6    169 sp|P27127|RFAB_ECOLI -            359   0.00033   20.6   0.0   1   1   2.6e-07   0.00056   19.8   0.0    79   165    74   159    22   163 0.85 Monogalactosyldiacylglycerol (MGDG) synthase
Glyco_trans_1_2      PF13524.1     92 sp|P27127|RFAB_ECOLI -            359    0.0011   19.2   0.0   1   1     1e-06    0.0021   18.2   0.0     3    61   260   321   258   331 0.92 Glycosyl transferases group 1
NusG                 PF02357.14    92 sp|P0AFW0|RFAH_ECOLI -            162   3.9e-22   78.2   0.0   1   1   7.3e-26   5.4e-22   77.8   0.0     2    91     3    90     2    91 0.92 Transcription termination factor nusG
KOW                  PF00467.24    32 sp|P0AFW0|RFAH_ECOLI -            162     0.011   15.3   0.2   1   1     3e-06     0.022   14.4   0.0     1    17   112   128   112   129 0.94 KOW motif
Kdo                  PF06293.9    206 sp|P25741|RFAP_ECOLI -            265   6.6e-63  211.4   0.0   1   1   1.1e-66   7.9e-63  211.2   0.0     2   206    20   230    19   230 0.98 Lipopolysaccharide kinase (Kdo/WaaP) family
zf-U1                PF06220.7     38 sp|P25741|RFAP_ECOLI -            265     0.072   12.6   1.7   2   2   1.1e-05      0.08   12.5   0.2    19    32   149   162   145   168 0.89 U1 zinc finger
Glyco_transf_9       PF01075.12   247 sp|P25742|RFAQ_ECOLI -            344   1.4e-75  253.6   0.0   1   1   3.4e-79   1.7e-75  253.4   0.0     2   246    65   314    64   315 0.99 Glycosyltransferase family 9 (heptosyltransferase)
Glyco_trans_4_2      PF13477.1    139 sp|P25742|RFAQ_ECOLI -            344   0.00072   19.4   0.0   1   2    0.0001      0.52   10.1   0.0    45    90    45    89     6   104 0.69 Glycosyl transferase 4-like
DUF2874              PF11396.3     61 sp|P25742|RFAQ_ECOLI -            344     0.083   12.8   0.0   1   1   5.1e-05      0.25   11.3   0.0     8    26     9    27     5    33 0.91 Protein of unknown function (DUF2874)
WaaY                 PF06176.6    229 sp|P27240|RFAY_ECOLI -            232    2e-127  423.0  14.8   1   1  4.6e-131  2.3e-127  422.8  14.8     1   229     1   229     1   229 1.00 Lipopolysaccharide core biosynthesis protein (WaaY)
RIO1                 PF01163.17   189 sp|P27240|RFAY_ECOLI -            232    0.0028   17.0   0.0   1   1   1.2e-06    0.0061   15.9   0.0    81   161   118   189   112   197 0.80 RIO1 family
SecA_PP_bind         PF01043.15   114 sp|P27240|RFAY_ECOLI -            232     0.013   15.8   0.9   2   2   1.8e-05     0.089   13.1   0.1    11   107    68   191    59   194 0.64 SecA preprotein cross-linking domain
Glyco_transf_9       PF01075.12   247 sp|P37692|RFAF_ECOLI -            348   1.4e-89  299.5   0.0   1   1   3.3e-93   1.7e-89  299.3   0.0     1   247    69   324    69   324 0.98 Glycosyltransferase family 9 (heptosyltransferase)
PS_pyruv_trans       PF04230.8    286 sp|P37692|RFAF_ECOLI -            348    0.0038   16.9   0.0   2   2   0.00011      0.52    9.9   0.0   185   264   192   268   174   269 0.90 Polysaccharide pyruvyl transferase
Epimerase            PF01370.16   236 sp|P37692|RFAF_ECOLI -            348      0.11   11.8   0.0   1   1   5.8e-05      0.28   10.5   0.0    14   100   205   284   203   291 0.79 NAD dependent epimerase/dehydratase family
Polysacc_synt        PF01943.12   273 sp|P37746|RFBX_ECOLI -            415     5e-69  232.5  25.8   1   2     1e-72     5e-69  232.5  25.8     1   271     8   277     8   279 0.99 Polysaccharide biosynthesis protein
Polysacc_synt_3      PF13440.1    251 sp|P37746|RFBX_ECOLI -            415   2.2e-13   50.2  18.1   1   2   4.4e-17   2.2e-13   50.2  18.1     5   249    27   276    24   278 0.84 Polysaccharide biosynthesis protein
Polysacc_synt_C      PF14667.1    146 sp|P37746|RFBX_ECOLI -            415   9.2e-06   25.5   6.2   3   3   1.9e-09   9.2e-06   25.5   6.2     1    79   330   409   330   412 0.96 Polysaccharide biosynthesis C-terminal domain
DegT_DnrJ_EryC1      PF01041.12   363 sp|P27833|RFFA_ECOLI -            376   2.1e-87  293.5   0.0   1   1     1e-90   2.6e-87  293.2   0.0     7   361    13   370     9   372 0.93 DegT/DnrJ/EryC1/StrS aminotransferase family
Aminotran_1_2        PF00155.16   363 sp|P27833|RFFA_ECOLI -            376   8.3e-11   41.4   0.1   1   2   7.4e-14   1.8e-10   40.3   0.0    67   189    46   154     9   187 0.88 Aminotransferase class I and II
Aminotran_5          PF00266.14   371 sp|P27833|RFFA_ECOLI -            376   5.1e-08   32.0   0.1   1   1   3.3e-11   8.2e-08   31.3   0.1    62   182    47   159    33   204 0.90 Aminotransferase class-V
Beta_elim_lyase      PF01212.16   290 sp|P27833|RFFA_ECOLI -            376   0.00094   18.4   0.1   1   1   5.2e-07    0.0013   17.9   0.1    13   166    15   154     9   262 0.79 Beta-eliminating lyase
OKR_DC_1             PF01276.15   417 sp|P27833|RFFA_ECOLI -            376    0.0063   15.1   0.0   1   2   8.7e-06     0.022   13.3   0.0    55   148    20   113     8   163 0.81 Orn/Lys/Arg decarboxylase, major domain
DUF3310              PF11753.3     60 sp|P27833|RFFA_ECOLI -            376       0.1   12.5   0.0   2   2   0.00025      0.61   10.0   0.0    13    41   200   227   196   228 0.87 Protein of unknwon function (DUF3310)
RF-1                 PF00472.15   114 sp|P28369|RFH_ECOLI  -            166   9.8e-24   83.3   2.0   1   1   8.7e-28   1.3e-23   82.9   2.0     9   104    65   159    59   162 0.86 RF-1 domain
RhaA                 PF06134.6    417 sp|P32170|RHAA_ECOLI -            419  6.5e-239  792.8   0.0   1   1    5e-243  7.4e-239  792.6   0.0     1   417     3   418     3   418 1.00 L-rhamnose isomerase (RhaA)
FGGY_N               PF00370.16   245 sp|P32171|RHAB_ECOLI -            489   4.3e-30  104.8   0.0   1   1   1.3e-33   6.2e-30  104.3   0.0     3   242     7   241     5   244 0.86 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C               PF02782.11   198 sp|P32171|RHAB_ECOLI -            489   1.5e-25   90.0   0.1   1   1   5.5e-29   2.7e-25   89.1   0.1     1   196   253   439   253   441 0.89 FGGY family of carbohydrate kinases, C-terminal domain
DUF2726              PF10881.3    126 sp|P32171|RHAB_ECOLI -            489     0.076   12.6   0.0   1   1   3.4e-05      0.17   11.4   0.0    54   120    80   145    78   148 0.82 Protein of unknown function (DUF2726)
Aldolase_II          PF00596.16   184 sp|P32169|RHAD_ECOLI -            274   2.7e-34  118.4   0.0   1   1   2.2e-38   3.2e-34  118.1   0.0     2   183    12   238    11   239 0.85 Class II Aldolase and Adducin N-terminal domain
DUF718               PF05336.8    106 sp|P32156|RHAM_ECOLI -            104   3.2e-37  126.5   0.6   1   1   2.4e-41   3.5e-37  126.4   0.6     2   105     3   103     2   104 0.99 Domain of unknown function (DUF718)
RhaT                 PF06379.7    344 sp|P27125|RHAT_ECOLI -            344  1.3e-215  714.8  32.9   1   1    1e-219  1.5e-215  714.6  32.9     1   343     1   343     1   344 1.00 L-rhamnose-proton symport protein (RhaT)
DEAD                 PF00270.24   169 sp|P0A8J8|RHLB_ECOLI -            421   5.6e-41  139.8   0.0   1   2   2.2e-41     8e-38  129.5   0.0     1   167    33   206    33   208 0.94 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|P0A8J8|RHLB_ECOLI -            421   4.2e-25   87.4   0.0   1   1   3.4e-28   1.2e-24   85.8   0.0     3    78   276   351   274   351 0.97 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|P0A8J8|RHLB_ECOLI -            421     0.012   15.4   0.0   1   1   8.3e-06     0.031   14.1   0.0    32    91    53   121    47   202 0.62 Type III restriction enzyme, res subunit
AAA_22               PF13401.1    131 sp|P0A8J8|RHLB_ECOLI -            421      0.13   12.3   0.2   1   1   0.00015      0.55   10.3   0.2    12   109    54   180    52   204 0.58 AAA domain
DEAD                 PF00270.24   169 sp|P25888|RHLE_ECOLI -            454   1.2e-48  164.8   0.1   1   2   7.7e-51   1.6e-47  161.1   0.0     1   168    25   196    25   197 0.96 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|P25888|RHLE_ECOLI -            454   8.6e-26   89.6   0.0   1   1   1.1e-28   2.3e-25   88.2   0.0     2    77   264   339   263   340 0.98 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|P25888|RHLE_ECOLI -            454   9.5e-05   22.2   0.0   1   1   1.2e-07   0.00026   20.8   0.0     4   182    24   190    22   192 0.73 Type III restriction enzyme, res subunit
DUF1253              PF06862.7    442 sp|P25888|RHLE_ECOLI -            454   0.00087   17.7   0.0   4   4   3.9e-05     0.083   11.2   0.0   289   390   234   333   213   351 0.87 Protein of unknown function (DUF1253)
UvrD-helicase        PF00580.16   315 sp|P25888|RHLE_ECOLI -            454    0.0029   16.9   0.0   1   2   9.4e-06      0.02   14.2   0.0     2   163    25   229    24   268 0.71 UvrD/REP helicase N-terminal domain
AAA_19               PF13245.1     76 sp|P25888|RHLE_ECOLI -            454     0.003   17.2   1.0   1   2   4.1e-05     0.087   12.5   0.2     4    62    33    95    30   113 0.78 Part of AAA domain
HpcH_HpaI            PF03328.9    221 sp|P76469|RHMA_ECOLI -            267   2.6e-68  229.2   0.0   1   1     6e-72     3e-68  229.0   0.0     1   220    19   245    19   246 0.99 HpcH/HpaI aldolase/citrate lyase family
PK                   PF00224.16   348 sp|P76469|RHMA_ECOLI -            267     0.064   11.8   0.0   1   1     2e-05     0.099   11.2   0.0   207   276   135   212   122   222 0.72 Pyruvate kinase, barrel domain
MR_MLE_C             PF13378.1    111 sp|P77215|RHMD_ECOLI -            401   6.4e-15   55.0   0.0   2   2   2.9e-17   1.1e-13   51.1   0.0     1   111   275   388   275   388 0.70 Enolase C-terminal domain-like
MR_MLE               PF01188.16    67 sp|P77215|RHMD_ECOLI -            401   1.9e-13   50.7   0.0   1   1     1e-16   3.7e-13   49.7   0.0     2    62   206   268   205   273 0.91 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
MR_MLE_N             PF02746.11   117 sp|P77215|RHMD_ECOLI -            401   2.5e-08   33.8   0.0   1   1   1.1e-11   4.1e-08   33.2   0.0    30   117    67   157    54   157 0.90 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
MFS_1                PF07690.11   352 sp|P76470|RHMT_ECOLI -            429   9.8e-44  149.4  41.4   1   1   9.5e-48   1.4e-43  148.9  41.4     3   352    23   381    21   381 0.91 Major Facilitator Superfamily
Rho_RNA_bind         PF07497.7     78 sp|P0AG30|RHO_ECOLI  -            419   6.4e-42  141.0   0.1   1   1   9.1e-45   1.1e-41  140.2   0.1     1    78    49   126    49   126 0.98 Rho termination factor, RNA-binding domain
ATP-synt_ab          PF00006.20   215 sp|P0AG30|RHO_ECOLI  -            419   8.6e-42  143.0   0.0   1   1   9.1e-45   1.1e-41  142.6   0.0     3   214   159   364   157   365 0.95 ATP synthase alpha/beta family, nucleotide-binding domain
Rho_N                PF07498.7     43 sp|P0AG30|RHO_ECOLI  -            419   6.5e-18   64.2   0.9   1   2   3.4e-20   4.2e-17   61.6   0.3     1    43     5    47     5    47 0.98 Rho termination factor, N-terminal domain
AAA_25               PF13481.1    194 sp|P0AG30|RHO_ECOLI  -            419   7.5e-06   25.4   0.1   1   1   2.1e-08   2.5e-05   23.7   0.1    31   156   169   272   146   286 0.64 AAA domain
NACHT                PF05729.7    166 sp|P0AG30|RHO_ECOLI  -            419   9.8e-05   22.0   0.0   1   1   1.5e-07   0.00018   21.2   0.0    12    96   183   273   179   288 0.81 NACHT domain
OB_RNB               PF08206.6     58 sp|P0AG30|RHO_ECOLI  -            419   0.00024   20.5   0.0   1   1   4.2e-07   0.00052   19.4   0.0     1    44    53   103    53   110 0.78 Ribonuclease B OB domain
FtsK_SpoIIIE         PF01580.13   205 sp|P0AG30|RHO_ECOLI  -            419   0.00079   18.9   0.0   1   1     1e-06    0.0012   18.3   0.0    39    89   168   222   141   285 0.80 FtsK/SpoIIIE family
AAA_22               PF13401.1    131 sp|P0AG30|RHO_ECOLI  -            419    0.0021   18.2   0.0   1   1   4.3e-06    0.0053   16.8   0.0     7    99   174   270   168   284 0.75 AAA domain
AAA                  PF00004.24   132 sp|P0AG30|RHO_ECOLI  -            419    0.0025   18.0   0.0   1   1   4.4e-06    0.0054   16.9   0.0     2    74   175   274   174   288 0.65 ATPase family associated with various cellular activities (AAA)
AAA_10               PF12846.2    304 sp|P0AG30|RHO_ECOLI  -            419     0.014   14.8   0.0   1   1   3.9e-05     0.048   13.0   0.0     5    54   175   229   172   240 0.82 AAA-like domain
AAA_14               PF13173.1    128 sp|P0AG30|RHO_ECOLI  -            419     0.032   14.1   0.0   1   1    0.0002      0.24   11.2   0.0    10    77   179   274   172   291 0.64 AAA domain
AAA_16               PF13191.1    185 sp|P0AG30|RHO_ECOLI  -            419      0.11   12.4   0.0   1   1   0.00079      0.98    9.3   0.0    15    63   161   211   155   280 0.66 AAA ATPase domain
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7   3  20   1.9e-05     0.056   13.6   1.7    16    36   355   375   342   392 0.70 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7   4  20   1.7e-10   4.9e-07   29.7   2.1     1    38   425   463   425   463 0.97 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7   5  20     8e-11   2.4e-07   30.7   0.1     1    37   468   504   468   505 0.97 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7   6  20   2.6e-09   7.8e-06   25.9   0.6     1    25   489   513   489   517 0.95 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7   7  20   1.1e-08   3.3e-05   23.9   0.1     1    36   533   568   533   570 0.92 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7   8  20   1.9e-11   5.6e-08   32.7   0.4     1    37   575   611   575   612 0.98 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7   9  20   3.4e-08    0.0001   22.3   0.6     1    37   617   652   617   654 0.96 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7  10  20     6e-12   1.8e-08   34.3   1.0     1    38   637   674   637   674 0.99 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7  11  20   5.8e-06     0.017   15.2   0.1     1    30   658   687   658   693 0.91 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7  12  20   2.5e-06    0.0074   16.4   0.4     2    32   680   709   679   715 0.87 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7  13  20   5.3e-08   0.00016   21.7   1.7     1    31   699   729   699   738 0.92 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7  14  20     1e-06    0.0031   17.6   1.1     1    31   720   753   720   764 0.77 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7  16  20   4.6e-06     0.014   15.5   0.9     1    35   859   892   859   908 0.89 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16916|RHSA_ECOLI -           1377   6.7e-62  204.5 104.7  17  20   2.9e-12   8.6e-09   35.3   4.2     1    37   939   984   939   985 0.92 RHS Repeat
Toxin_55             PF15606.1     77 sp|P16916|RHSA_ECOLI -           1377   1.7e-39  133.6   1.3   1   1   1.3e-42   3.9e-39  132.4   1.3     1    77  1299  1375  1299  1375 0.99 Putative toxin 55
RHS                  PF03527.9     41 sp|P16916|RHSA_ECOLI -           1377   7.8e-22   76.7   1.9   3   3   3.7e-23   1.1e-19   69.8   0.5     1    41  1143  1183  1143  1183 0.98 RHS protein
RHS                  PF03527.9     41 sp|P24211|RHSE_ECOLI -            682     2e-20   72.2   0.8   2   2   2.7e-24     2e-20   72.2   0.8     1    41   429   469   429   469 0.98 RHS protein
RHS_repeat           PF05593.9     38 sp|P24211|RHSE_ECOLI -            682   6.9e-11   42.0  33.9   1   7   5.2e-05      0.38   10.9   0.9     6    31     4    32     2    41 0.72 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P24211|RHSE_ECOLI -            682   6.9e-11   42.0  33.9   3   7   3.7e-06     0.027   14.6   0.8     1    32   145   176   145   195 0.70 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P24211|RHSE_ECOLI -            682   6.9e-11   42.0  33.9   4   7   1.2e-09   8.9e-06   25.7   0.9     2    29   226   262   225   272 0.89 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5   3  20   1.9e-05     0.057   13.6   1.7    16    36   355   375   342   392 0.70 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5   4  20   1.7e-10   5.1e-07   29.7   2.1     1    38   425   463   425   463 0.97 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5   5  20   8.2e-11   2.4e-07   30.7   0.1     1    37   468   504   468   505 0.97 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5   6  20   2.7e-09   8.1e-06   25.8   0.6     1    25   489   513   489   517 0.95 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5   7  20   1.2e-08   3.4e-05   23.8   0.1     1    36   533   568   533   570 0.92 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5   8  20     2e-11   5.8e-08   32.7   0.4     1    37   575   611   575   612 0.98 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5   9  20   3.2e-08   9.4e-05   22.4   0.4     1    37   617   652   617   653 0.96 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5  10  20   6.7e-12     2e-08   34.1   1.1     1    38   637   674   637   674 0.99 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5  11  20   6.1e-06     0.018   15.1   0.1     1    29   658   686   658   692 0.90 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5  12  20   2.5e-06    0.0076   16.4   0.5     2    32   680   709   678   715 0.87 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5  13  20   5.9e-08   0.00018   21.6   1.8     1    31   699   729   699   738 0.92 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5  14  20   1.1e-06    0.0033   17.5   1.1     1    31   720   753   720   764 0.77 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5  16  20   4.7e-06     0.014   15.5   0.9     1    35   859   892   859   908 0.89 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16917|RHSB_ECOLI -           1411   3.7e-62  205.4 104.5  17  20     3e-12   8.9e-09   35.3   4.2     1    37   939   984   939   985 0.92 RHS Repeat
DUF4329              PF14220.1    123 sp|P16917|RHSB_ECOLI -           1411   1.8e-37  128.0   0.8   1   1   1.7e-40   5.1e-37  126.5   0.8     2   115  1279  1396  1278  1402 0.95 Domain of unknown function (DUF4329)
RHS                  PF03527.9     41 sp|P16917|RHSB_ECOLI -           1411   8.5e-23   79.8   1.8   3   3   3.9e-24   1.2e-20   73.0   0.5     1    41  1143  1183  1143  1183 0.98 RHS protein
RHS_repeat           PF05593.9     38 sp|P16919|RHSD_ECOLI -           1426   4.9e-61  201.8 117.1   2  19   1.7e-05     0.061   13.5   0.4     1    26   320   346   320   358 0.92 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16919|RHSD_ECOLI -           1426   4.9e-61  201.8 117.1   3  19   0.00016       0.6   10.3   0.1    19    36   362   379   348   381 0.84 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16919|RHSD_ECOLI -           1426   4.9e-61  201.8 117.1   5  19   3.4e-09   1.3e-05   25.2   1.3     6    37   413   444   411   446 0.91 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16919|RHSD_ECOLI -           1426   4.9e-61  201.8 117.1   6  19   1.1e-06     0.004   17.2   0.3     5    37   455   487   451   488 0.92 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16919|RHSD_ECOLI -           1426   4.9e-61  201.8 117.1   7  19   3.7e-10   1.4e-06   28.3   4.3     1    38   493   532   493   532 0.92 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16919|RHSD_ECOLI -           1426   4.9e-61  201.8 117.1   8  19   9.2e-10   3.4e-06   27.0   0.1     1    36   537   572   537   573 0.92 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16919|RHSD_ECOLI -           1426   4.9e-61  201.8 117.1   9  19   1.7e-13   6.2e-10   38.9   3.2     1    37   579   615   579   616 0.97 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16919|RHSD_ECOLI -           1426   4.9e-61  201.8 117.1  10  19   2.5e-09   9.2e-06   25.6   0.2     1    37   621   656   621   657 0.97 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16919|RHSD_ECOLI -           1426   4.9e-61  201.8 117.1  11  19     6e-07    0.0022   18.1   1.6     1    31   662   692   662   697 0.93 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16919|RHSD_ECOLI -           1426   4.9e-61  201.8 117.1  12  19   1.1e-05     0.042   14.0   0.3     1    31   703   733   703   739 0.86 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16919|RHSD_ECOLI -           1426   4.9e-61  201.8 117.1  13  19   1.2e-06    0.0045   17.1   0.9     1    31   724   757   724   766 0.89 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16919|RHSD_ECOLI -           1426   4.9e-61  201.8 117.1  15  19   7.6e-05      0.28   11.4   0.7     1    32   870   901   870   920 0.69 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16919|RHSD_ECOLI -           1426   4.9e-61  201.8 117.1  16  19   5.5e-09     2e-05   24.5   0.8     2    29   951   987   950   997 0.89 RHS Repeat
DUF4329              PF14220.1    123 sp|P16919|RHSD_ECOLI -           1426   2.4e-35  121.1   0.2   1   1   1.8e-38   6.5e-35  119.7   0.2     2   115  1291  1409  1290  1417 0.94 Domain of unknown function (DUF4329)
RHS                  PF03527.9     41 sp|P16919|RHSD_ECOLI -           1426   9.3e-22   76.5   3.3   2   2   2.5e-23   9.3e-20   70.1   0.8     2    41  1155  1194  1154  1194 0.97 RHS protein
RHS_repeat           PF05593.9     38 sp|P16918|RHSC_ECOLI -           1397   1.6e-63  209.7 107.4   3  19   2.8e-05       0.1   12.8   0.8     1    23   361   383   361   394 0.87 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16918|RHSC_ECOLI -           1397   1.6e-63  209.7 107.4   4  19   1.3e-10     5e-07   29.7   2.1     1    38   425   463   425   463 0.97 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16918|RHSC_ECOLI -           1397   1.6e-63  209.7 107.4   5  19   4.2e-10   1.5e-06   28.1   0.1     1    37   468   504   468   505 0.96 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16918|RHSC_ECOLI -           1397   1.6e-63  209.7 107.4   6  19   7.1e-09   2.6e-05   24.2   1.3     1    25   489   513   489   515 0.95 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16918|RHSC_ECOLI -           1397   1.6e-63  209.7 107.4   7  19   7.1e-09   2.6e-05   24.2   0.1     1    36   533   568   533   570 0.92 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16918|RHSC_ECOLI -           1397   1.6e-63  209.7 107.4   8  19   5.8e-13   2.2e-09   37.2   0.6     1    37   575   611   575   612 0.98 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16918|RHSC_ECOLI -           1397   1.6e-63  209.7 107.4   9  19   2.4e-06    0.0088   16.1   0.5     1    27   596   622   596   634 0.92 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16918|RHSC_ECOLI -           1397   1.6e-63  209.7 107.4  10  19   3.5e-12   1.3e-08   34.7   0.5     1    38   637   674   637   674 0.99 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16918|RHSC_ECOLI -           1397   1.6e-63  209.7 107.4  11  19   1.6e-06    0.0061   16.7   0.5     2    33   680   710   679   715 0.86 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16918|RHSC_ECOLI -           1397   1.6e-63  209.7 107.4  12  19   1.2e-08   4.3e-05   23.5   1.9     1    31   699   729   699   735 0.94 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16918|RHSC_ECOLI -           1397   1.6e-63  209.7 107.4  13  19   1.7e-06    0.0063   16.6   0.5     1    31   720   753   720   763 0.84 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16918|RHSC_ECOLI -           1397   1.6e-63  209.7 107.4  15  19     5e-06     0.019   15.1   1.3     1    35   859   892   859   908 0.89 RHS Repeat
RHS_repeat           PF05593.9     38 sp|P16918|RHSC_ECOLI -           1397   1.6e-63  209.7 107.4  16  19   3.3e-12   1.2e-08   34.8   4.5     1    37   939   984   939   985 0.92 RHS Repeat
RHS                  PF03527.9     41 sp|P16918|RHSC_ECOLI -           1397   2.8e-23   81.4   3.7   3   3   2.8e-23     1e-19   69.9   1.0     1    41  1143  1183  1143  1183 0.98 RHS protein
EamA                 PF00892.15   126 sp|P0AA67|RHTA_ECOLI -            295   6.9e-23   81.0  29.8   1   2   7.6e-10   3.7e-06   26.9  10.3     9   124    30   135    17   137 0.85 EamA-like transporter family
EamA                 PF00892.15   126 sp|P0AA67|RHTA_ECOLI -            295   6.9e-23   81.0  29.8   2   2   4.2e-20   2.1e-16   60.1  11.6     2   123   159   278   158   281 0.91 EamA-like transporter family
EmrE                 PF13536.1    113 sp|P0AA67|RHTA_ECOLI -            295      0.01   15.9  33.2   4   4   2.1e-05       0.1   12.8   4.5    38   101   212   276   203   284 0.87 Multidrug resistance efflux transporter
Peptidase_U4         PF03419.8    293 sp|P0AA67|RHTA_ECOLI -            295       5.2    6.0   8.0   1   2   9.8e-05      0.48    9.4   2.1    35   140    18   136    11   143 0.86 Sporulation factor SpoIIGA
LysE                 PF01810.13   191 sp|P0AG34|RHTB_ECOLI -            206   8.1e-46  155.7  14.2   1   1   6.3e-50   9.3e-46  155.5  14.2     1   189    14   202    14   204 0.98 LysE type translocator
LysE                 PF01810.13   191 sp|P0AG38|RHTC_ECOLI -            206   6.2e-54  182.1  12.2   1   1   2.4e-57   7.2e-54  181.9  12.2     2   190    14   205    13   206 0.98 LysE type translocator
TerC                 PF03741.11   184 sp|P0AG38|RHTC_ECOLI -            206   0.00021   20.7   6.7   1   1   2.4e-07   0.00073   19.0   6.7    32   168    39   196     2   205 0.66 Integral membrane protein TerC family
Nitrate_red_gam      PF02665.9    222 sp|P0AG38|RHTC_ECOLI -            206     0.049   12.9   7.8   1   2   5.2e-06     0.015   14.6   4.6    57   183     6   138     3   156 0.80 Nitrate reductase gamma subunit
GTP_cyclohydro2      PF00925.15   169 sp|P0A7I7|RIBA_ECOLI -            196   1.3e-69  232.7   0.0   1   1     1e-73   1.5e-69  232.5   0.0     2   169     4   171     3   171 0.99 GTP cyclohydrolase II
DHBP_synthase        PF00926.14   194 sp|P0A7J0|RIBB_ECOLI -            217   6.5e-80  266.9   0.8   1   1   4.9e-84   7.3e-80  266.7   0.8     1   194    16   209    16   209 0.99 3,4-dihydroxy-2-butanone 4-phosphate synthase
RibD_C               PF01872.12   200 sp|P25539|RIBD_ECOLI -            367   4.1e-64  215.8   0.0   1   1   7.6e-68   5.7e-64  215.4   0.0     1   200   147   362   147   362 0.97 RibD C-terminal domain
dCMP_cyt_deam_1      PF00383.17   102 sp|P25539|RIBD_ECOLI -            367   1.4e-24   85.6   0.3   1   1   2.8e-28   2.1e-24   85.1   0.3     3   100     2    98     1   100 0.94 Cytidine and deoxycytidylate deaminase zinc-binding region
FAD_syn              PF06574.7    158 sp|P0AG40|RIBF_ECOLI -            313   2.1e-57  193.1   0.0   1   1   5.9e-61   2.9e-57  192.7   0.0     3   158    13   168    11   168 0.98 FAD synthetase
Flavokinase          PF01687.12   125 sp|P0AG40|RIBF_ECOLI -            313   6.8e-40  135.8   0.0   1   1   2.1e-43     1e-39  135.2   0.0     1   124   184   307   184   308 0.97 Riboflavin kinase
CTP_transf_2         PF01467.21   157 sp|P0AG40|RIBF_ECOLI -            313      0.06   13.4   0.1   1   2     5e-05      0.25   11.3   0.0     1    28    20    47    20    65 0.84 Cytidylyltransferase
Ribonuc_L-PSP        PF01042.16   121 sp|P0AF93|RIDA_ECOLI -            128   2.8e-46  156.2   0.9   1   1   6.3e-50   3.1e-46  156.0   0.9     1   120     7   126     7   127 0.98 Endoribonuclease L-PSP
DUF3857              PF12969.2    177 sp|P0AF93|RIDA_ECOLI -            128     0.089   12.3   0.0   1   1   2.2e-05      0.11   12.0   0.0    65   143    41   122    27   126 0.78 Domain of Unknown Function with PDB structure (DUF3857)
YjgF_endoribonc      PF14588.1    148 sp|P0AF93|RIDA_ECOLI -            128       0.1   12.5   0.1   1   1   3.7e-05      0.18   11.6   0.1    12    42     8    38     1    73 0.85 YjgF/chorismate_mutase-like, putative endoribonuclease
IU_nuc_hydro         PF01156.14   313 sp|P41409|RIHA_ECOLI -            311  4.2e-102  341.5   0.1   1   1  3.1e-106  4.7e-102  341.4   0.1     3   310     4   308     2   311 0.95 Inosine-uridine preferring nucleoside hydrolase
IU_nuc_hydro         PF01156.14   313 sp|P33022|RIHB_ECOLI -            313   5.4e-95  318.2   0.1   1   1   4.4e-99   6.5e-95  317.9   0.1     1   310     3   307     3   309 0.94 Inosine-uridine preferring nucleoside hydrolase
IU_nuc_hydro         PF01156.14   313 sp|P22564|RIHC_ECOLI -            304   4.6e-93  311.8   0.0   1   1   3.5e-97   5.2e-93  311.6   0.0     3   311     4   302     2   304 0.96 Inosine-uridine preferring nucleoside hydrolase
Acetyltransf_3       PF13302.1    142 sp|P0A948|RIMJ_ECOLI -            194   1.1e-19   71.0   0.1   1   1   5.3e-23   1.3e-19   70.7   0.1     1   142    17   162    17   162 0.87 Acetyltransferase (GNAT) domain
Acetyltransf_4       PF13420.1    155 sp|P0A948|RIMJ_ECOLI -            194   6.6e-14   52.1   0.2   1   1   3.6e-17   8.8e-14   51.7   0.2     2   154    21   181    20   182 0.78 Acetyltransferase (GNAT) domain
Acetyltransf_1       PF00583.19    83 sp|P0A948|RIMJ_ECOLI -            194   1.7e-08   34.3   0.1   1   1     1e-11   2.6e-08   33.7   0.1     2    83    83   162    82   162 0.96 Acetyltransferase (GNAT) family
Acetyltransf_8       PF13523.1    152 sp|P0A948|RIMJ_ECOLI -            194   1.6e-06   28.1   0.1   1   1   8.5e-10   2.1e-06   27.6   0.1    61   141    76   166    20   170 0.80 Acetyltransferase (GNAT) domain
Acetyltransf_10      PF13673.1    117 sp|P0A948|RIMJ_ECOLI -            194     0.014   15.5   0.0   1   1   7.8e-06     0.019   15.0   0.0    28   117    59   161    45   161 0.81 Acetyltransferase (GNAT) domain
FR47                 PF08445.5     86 sp|P0A948|RIMJ_ECOLI -            194     0.088   12.5   0.0   1   1   6.3e-05      0.16   11.7   0.0    32    80   114   164   106   171 0.73 FR47-like protein
Acetyltransf_1       PF00583.19    83 sp|P0A944|RIMI_ECOLI -            148   2.7e-20   72.1   0.0   1   1   3.5e-23     4e-20   71.6   0.0     4    82    48   120    45   121 0.92 Acetyltransferase (GNAT) family
Acetyltransf_10      PF13673.1    117 sp|P0A944|RIMI_ECOLI -            148     2e-13   50.4   0.1   1   1   2.4e-16   2.7e-13   50.0   0.1    23   117    19   120     8   120 0.85 Acetyltransferase (GNAT) domain
FR47                 PF08445.5     86 sp|P0A944|RIMI_ECOLI -            148   1.5e-12   47.0   0.1   1   1   1.8e-15   2.1e-12   46.6   0.1    17    81    59   124    42   130 0.82 FR47-like protein
Acetyltransf_7       PF13508.1     79 sp|P0A944|RIMI_ECOLI -            148   3.8e-12   46.1   0.0   1   1   4.5e-15   5.2e-12   45.7   0.0     8    78    45   121    38   122 0.86 Acetyltransferase (GNAT) domain
Acetyltransf_4       PF13420.1    155 sp|P0A944|RIMI_ECOLI -            148   1.2e-08   35.0   0.0   1   1   1.2e-11   1.4e-08   34.8   0.0    32   148    23   134     5   141 0.82 Acetyltransferase (GNAT) domain
Acetyltransf_8       PF13523.1    152 sp|P0A944|RIMI_ECOLI -            148   1.8e-08   34.4   0.1   1   1   4.9e-10   5.6e-07   29.5   0.1    75   138    61   122     4   127 0.78 Acetyltransferase (GNAT) domain
Acetyltransf_3       PF13302.1    142 sp|P0A944|RIMI_ECOLI -            148   4.5e-07   30.1   0.1   1   1   1.6e-09   1.8e-06   28.1   0.1    85   142    65   121     3   121 0.79 Acetyltransferase (GNAT) domain
Acetyltransf_9       PF13527.1    127 sp|P0A944|RIMI_ECOLI -            148   4.9e-07   29.6   0.0   1   1   5.7e-10   6.5e-07   29.2   0.0    73   126    64   122     4   123 0.93 Acetyltransferase (GNAT) domain
Acetyltransf_6       PF13480.1    142 sp|P0A944|RIMI_ECOLI -            148   3.6e-05   23.7   0.0   1   1   4.1e-08   4.6e-05   23.3   0.0    72   131    41   100    17   107 0.90 Acetyltransferase (GNAT) domain
Acetyltransf_CG      PF14542.1     78 sp|P0A944|RIMI_ECOLI -            148    0.0022   17.8   0.0   1   1   3.2e-06    0.0037   17.1   0.0     4    56    45    97    42   100 0.75 GCN5-related N-acetyl-transferase
GNAT_acetyltr_2      PF13718.1    196 sp|P0A944|RIMI_ECOLI -            148     0.004   16.5   0.0   1   1   5.2e-06    0.0059   15.9   0.0    94   121    67    94    34   117 0.82 GNAT acetyltransferase 2
GNAT_acetyltran      PF12746.2    265 sp|P0A944|RIMI_ECOLI -            148     0.023   13.5   0.0   1   1   2.4e-05     0.027   13.2   0.0   168   245    43   123    29   140 0.82 GNAT acetyltransferase
DUF3471              PF11954.3    100 sp|P0A944|RIMI_ECOLI -            148     0.087   12.6   0.0   1   1   0.00011      0.12   12.1   0.0    49    86    22    59     7    83 0.80 Domain of unknown function (DUF3471)
RimK                 PF08443.6    190 sp|P0C0U4|RIMK_ECOLI -            300   2.1e-82  275.2   0.0   1   1   1.9e-85   2.5e-82  274.9   0.0     1   190    97   286    97   286 1.00 RimK-like ATP-grasp domain
GSH-S_ATP            PF02955.11   174 sp|P0C0U4|RIMK_ECOLI -            300   9.9e-19   67.1   0.2   1   1   1.1e-21   1.5e-18   66.5   0.2    13   163   115   265   103   276 0.84 Prokaryotic glutathione synthetase, ATP-grasp domain
ATP-grasp_4          PF13535.1    184 sp|P0C0U4|RIMK_ECOLI -            300   7.7e-15   55.0   0.0   1   1     8e-18   1.1e-14   54.6   0.0     1   177    96   263    96   268 0.82 ATP-grasp domain
ATP-grasp_3          PF02655.9    161 sp|P0C0U4|RIMK_ECOLI -            300   2.2e-09   37.3   0.0   1   1   2.5e-12   3.4e-09   36.7   0.0     1   156    97   263    97   266 0.79 ATP-grasp domain
ATPgrasp_Ter         PF15632.1    330 sp|P0C0U4|RIMK_ECOLI -            300     2e-08   33.3   0.0   1   1   5.5e-11   7.4e-08   31.5   0.0    99   279    91   263    58   283 0.84 ATP-grasp in the biosynthetic pathway with Ter operon
Dala_Dala_lig_C      PF07478.8    203 sp|P0C0U4|RIMK_ECOLI -            300   1.4e-05   24.5   0.2   1   1   3.6e-08   4.8e-05   22.8   0.2    33   177   135   267   107   273 0.76 D-ala D-ala ligase C-terminus
ATPgrasp_ST          PF14397.1    285 sp|P0C0U4|RIMK_ECOLI -            300    0.0029   16.7   0.0   1   2   0.00049      0.66    9.0   0.0    63   129   125   184    82   189 0.73 Sugar-transfer associated ATP-grasp
GARS_A               PF01071.14   194 sp|P0C0U4|RIMK_ECOLI -            300     0.029   13.9   0.1   1   1   2.9e-05     0.039   13.5   0.1     6   144   103   232    98   262 0.79 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
ATP-grasp_2          PF08442.5    202 sp|P0C0U4|RIMK_ECOLI -            300     0.038   13.3   0.0   1   1   4.5e-05      0.06   12.7   0.0     6    76   102   168   100   199 0.84 ATP-grasp domain
DUF4102              PF13356.1     89 sp|P0C0U4|RIMK_ECOLI -            300     0.098   12.5   0.0   1   1   0.00022       0.3   11.0   0.0    50    79    81   113    66   117 0.84 Domain of unknown function (DUF4102)
Acetyltransf_3       PF13302.1    142 sp|P13857|RIML_ECOLI -            179   5.2e-22   78.5   0.0   1   1   2.1e-25   6.1e-22   78.3   0.0     2   141    11   150    10   151 0.88 Acetyltransferase (GNAT) domain
Acetyltransf_4       PF13420.1    155 sp|P13857|RIML_ECOLI -            179   6.8e-11   42.3   0.1   1   1   2.6e-14   7.9e-11   42.1   0.1    24   154    38   170    17   171 0.85 Acetyltransferase (GNAT) domain
Acetyltransf_1       PF00583.19    83 sp|P13857|RIML_ECOLI -            179   1.7e-10   40.7   0.0   1   1   9.7e-14   2.9e-10   40.0   0.0     3    82    74   150    72   151 0.96 Acetyltransferase (GNAT) family
Acetyltransf_8       PF13523.1    152 sp|P13857|RIML_ECOLI -            179   1.4e-05   24.9   0.0   1   1   5.5e-09   1.6e-05   24.7   0.0    81   140    96   154    16   160 0.76 Acetyltransferase (GNAT) domain
Acetyltransf_7       PF13508.1     79 sp|P13857|RIML_ECOLI -            179     7e-05   22.9   0.0   1   1   4.2e-08   0.00013   22.1   0.0     3    64    67   134    65   152 0.71 Acetyltransferase (GNAT) domain
RimM                 PF01782.13    84 sp|P0A7X6|RIMM_ECOLI -            182   1.1e-27   95.8   0.0   1   1   2.2e-31   1.6e-27   95.2   0.0     2    84    16    97    15    97 0.98 RimM N-terminal domain
PRC                  PF05239.11    79 sp|P0A7X6|RIMM_ECOLI -            182   9.5e-10   38.2   0.7   1   1   2.1e-13   1.5e-09   37.5   0.7     2    73   104   177   103   181 0.89 PRC-barrel domain
Radical_SAM          PF04055.16   166 sp|P0AEI4|RIMO_ECOLI -            441   9.5e-31  107.2   0.2   2   2   4.7e-31   1.4e-27   96.8   0.0     2   166   145   323   144   323 0.93 Radical SAM superfamily
UPF0004              PF00919.15    98 sp|P0AEI4|RIMO_ECOLI -            441   4.9e-22   77.5   0.0   1   1   2.9e-25   8.6e-22   76.8   0.0     1    92     9    96     9   102 0.89 Uncharacterized protein family UPF0004
TRAM                 PF01938.15    61 sp|P0AEI4|RIMO_ECOLI -            441   0.00051   19.7   0.1   1   1   4.1e-07    0.0012   18.5   0.1     2    58   377   438   376   441 0.92 TRAM domain
DUF150               PF02576.12   141 sp|P0A8A8|RIMP_ECOLI -            150   3.2e-47  159.6   0.0   1   1   2.5e-51   3.6e-47  159.4   0.0     2   141    12   146    11   146 0.96 Uncharacterised BCR, YhbC family COG0779
Ribonuc_red_lgC      PF02867.10   538 sp|P00452|RIR1_ECOLI -            761  7.1e-134  447.3   0.0   1   1  3.2e-136  1.6e-132  442.8   0.0     1   537   222   731   222   732 0.95 Ribonucleotide reductase, barrel domain
ATP-cone             PF03477.11    90 sp|P00452|RIR1_ECOLI -            761   6.4e-15   55.3   0.1   1   1   2.8e-18   1.4e-14   54.2   0.1     3    90     7    92     5    92 0.97 ATP cone domain
Ribonuc_red_lgN      PF00317.16    83 sp|P00452|RIR1_ECOLI -            761   1.5e-12   47.1   1.0   1   1   4.9e-16   2.4e-12   46.4   0.1     2    82   142   219   141   220 0.93 Ribonucleotide reductase, all-alpha domain
Ribonuc_red_sm       PF00268.16   281 sp|P69924|RIR2_ECOLI -            376   7.9e-30  103.8   2.5   1   2   1.3e-16   6.3e-13   48.3   0.4    13   143    31   158    22   165 0.91 Ribonucleotide reductase, small chain
Ribonuc_red_sm       PF00268.16   281 sp|P69924|RIR2_ECOLI -            376   7.9e-30  103.8   2.5   2   2   8.5e-19   4.2e-15   55.5   0.1   155   274   200   329   182   336 0.89 Ribonucleotide reductase, small chain
Ribonuc_red_lgC      PF02867.10   538 sp|P39452|RIR3_ECOLI -            714  3.3e-151  504.5   0.0   1   1    3e-153  1.5e-149  499.0   0.0     1   538   175   694   175   694 0.96 Ribonucleotide reductase, barrel domain
RNR_N                PF08343.5     82 sp|P39452|RIR3_ECOLI -            714   1.9e-29  101.2   0.1   1   1     1e-32     5e-29   99.9   0.1     1    82    16    97    16    97 0.99 Ribonucleotide reductase N-terminal
Ribonuc_red_lgN      PF00317.16    83 sp|P39452|RIR3_ECOLI -            714   3.2e-12   46.0   0.0   1   1   1.7e-15   8.3e-12   44.7   0.0     2    82    99   171    98   172 0.95 Ribonucleotide reductase, all-alpha domain
Ribonuc_red_sm       PF00268.16   281 sp|P37146|RIR4_ECOLI -            319   1.2e-80  270.5   0.1   1   1   1.9e-84   1.4e-80  270.2   0.1     1   280     1   280     1   281 0.97 Ribonucleotide reductase, small chain
LMSTEN               PF07988.7     48 sp|P37146|RIR4_ECOLI -            319     0.033   13.4   0.1   1   1     9e-06     0.067   12.4   0.1     9    28   132   151   129   155 0.88 LMSTEN motif
DMRL_synthase        PF00885.14   144 sp|P61714|RISB_ECOLI -            156   2.4e-57  192.6   1.1   1   1   1.8e-61   2.7e-57  192.5   1.1     2   143    11   153    10   154 0.98 6,7-dimethyl-8-ribityllumazine synthase
Ribosomal_L10        PF00466.15   100 sp|P0A7J3|RL10_ECOLI -            165   2.3e-26   91.6   0.0   1   1   2.2e-30   3.3e-26   91.1   0.0     3   100     5   101     3   101 0.98 Ribosomal protein L10
Ribosomal_L11_N      PF03946.9     60 sp|P0A7J7|RL11_ECOLI -            142   3.7e-32  109.5   0.3   1   1   1.4e-35   6.7e-32  108.7   0.3     1    60     8    67     8    67 0.99 Ribosomal protein L11, N-terminal domain
Ribosomal_L11        PF00298.14    69 sp|P0A7J7|RL11_ECOLI -            142   7.2e-29   99.7   2.9   1   1   2.7e-32   1.3e-28   98.8   2.9     1    69    72   140    72   140 0.99 Ribosomal protein L11, RNA binding domain
DUF3140              PF11338.3     92 sp|P0A7J7|RL11_ECOLI -            142     0.063   13.3   0.1   1   1   2.6e-05      0.13   12.3   0.1    23    72    86   135    77   139 0.84 Protein of unknown function (DUF3140)
Ribosomal_L13        PF00572.13   128 sp|P0AA10|RL13_ECOLI -            142   4.7e-55  185.0   0.3   1   1   1.1e-58   5.3e-55  184.9   0.3     1   127    15   141    15   142 0.99 Ribosomal protein L13
DUF3659              PF12396.3     64 sp|P0AA10|RL13_ECOLI -            142     0.078   12.6   0.0   1   1   2.7e-05      0.13   11.9   0.0     8    38    10    40     6    53 0.90 Protein of unknown function (DUF3659)
IMS_C                PF11799.3    127 sp|P0AA10|RL13_ECOLI -            142     0.089   12.7   0.0   1   1   2.2e-05      0.11   12.4   0.0    21    58    12    65     7   139 0.58 impB/mucB/samB family C-terminal domain
Ribosomal_L14        PF00238.14   122 sp|P0ADY3|RL14_ECOLI -            123   3.6e-54  181.7   0.4   1   1   5.4e-58     4e-54  181.5   0.4     1   122     1   123     1   123 0.98 Ribosomal protein L14p/L23e
Gp58                 PF07902.6    601 sp|P0ADY3|RL14_ECOLI -            123     0.013   13.8   0.1   1   1   1.9e-06     0.014   13.6   0.1   338   387    34    85    24    99 0.86 gp58-like protein
Ribosomal_L18e       PF00828.14   129 sp|P02413|RL15_ECOLI -            144   3.2e-23   82.4   2.5   1   1     3e-27   4.4e-23   82.0   2.5     3   127    27   143    26   144 0.88 Ribosomal protein L18e/L15
Ribosomal_L16        PF00252.13   133 sp|P0ADY7|RL16_ECOLI -            136   1.1e-50  170.8   0.8   1   1     8e-55   1.2e-50  170.7   0.8     1   132     4   131     4   132 0.97 Ribosomal protein L16p/L10e
Ribosomal_L17        PF01196.14    97 sp|P0AG44|RL17_ECOLI -            127   7.8e-38  128.9   0.0   1   1   6.3e-42   9.4e-38  128.7   0.0     1    97    20   116    20   116 0.99 Ribosomal protein L17
Ribosomal_L18p       PF00861.17   119 sp|P0C018|RL18_ECOLI -            117   1.2e-37  128.6   4.6   1   1   1.8e-41   1.4e-37  128.5   4.6     2   119     2   117     1   117 0.95 Ribosomal L18p/L5e family
TM1506               PF08973.5    134 sp|P0C018|RL18_ECOLI -            117       0.1   12.1   0.3   1   2   4.1e-05       0.3   10.6   0.2    58   104    22    69    16    82 0.83 Domain of unknown function (DUF1893)
Ribosomal_L19        PF01245.15   113 sp|P0A7K6|RL19_ECOLI -            115   9.6e-51  170.3   2.5   1   1   7.2e-55   1.1e-50  170.1   2.5     2   112     3   113     2   114 0.99 Ribosomal protein L19
Ribosomal_L1         PF00687.16   220 sp|P0A7L0|RL1_ECOLI  -            234     9e-50  169.0   0.2   1   1   7.2e-54   1.1e-49  168.7   0.2    13   219    28   220     9   221 0.91 Ribosomal protein L1p/L10e family
Ribosomal_L20        PF00453.13   108 sp|P0A7L3|RL20_ECOLI -            118     7e-48  161.0   8.9   1   1   1.1e-51   7.9e-48  160.8   8.9     1   108     2   109     2   109 0.99 Ribosomal protein L20
ScpA_ScpB            PF02616.9    242 sp|P0A7L3|RL20_ECOLI -            118      0.04   13.4   0.2   1   1   7.3e-06     0.054   13.0   0.2    83   140    46   104    36   116 0.85 ScpA/B protein
Ribosomal_L21p       PF00829.16    96 sp|P0AG48|RL21_ECOLI -            103   7.2e-38  128.6   2.3   1   1   5.4e-42   8.1e-38  128.4   2.3     1    96     1    96     1    96 0.99 Ribosomal prokaryotic L21 protein
Ribosomal_L22        PF00237.14   105 sp|P61175|RL22_ECOLI -            110   1.7e-41  140.4   2.4   1   1   1.3e-45   1.9e-41  140.2   2.4     1   104     5   108     5   109 0.99 Ribosomal protein L22p/L17e
Ribosomal_L23        PF00276.15    92 sp|P0ADZ0|RL23_ECOLI -            100   1.2e-32  111.6   1.2   1   1   2.7e-36   1.3e-32  111.5   1.2     2    89     9    96     8    99 0.97 Ribosomal protein L23
FimH_man-bind        PF09160.5    147 sp|P0ADZ0|RL23_ECOLI -            100     0.027   14.3   0.0   1   1   6.5e-06     0.032   14.0   0.0    67   133    17    83    11    96 0.82 FimH, mannose binding
ubiquitin            PF00240.18    69 sp|P0ADZ0|RL23_ECOLI -            100     0.068   12.5   0.3   1   1     2e-05     0.097   12.0   0.3     4    34    26    56    21    71 0.85 Ubiquitin family
KOW                  PF00467.24    32 sp|P60624|RL24_ECOLI -            104   1.3e-05   24.6   3.6   1   1   2.1e-09   3.1e-05   23.5   3.6     2    32     8    37     7    37 0.92 KOW motif
Ribosomal_L25p       PF01386.14    88 sp|P68919|RL25_ECOLI -             94   3.9e-30  103.8   0.3   1   1   2.9e-34   4.3e-30  103.6   0.3     1    88     4    91     4    91 0.99 Ribosomal L25p family
Ribosomal_L27        PF01016.14    81 sp|P0A7L8|RL27_ECOLI -             85   1.7e-39  133.4   3.0   1   1   1.2e-43   1.9e-39  133.3   3.0     1    80     2    82     2    83 0.98 Ribosomal L27 protein
Ribosomal_L28        PF00830.14    61 sp|P0A7M2|RL28_ECOLI -             78   1.1e-29  101.9   1.4   1   1   1.8e-33   1.3e-29  101.7   1.4     1    61     3    63     3    63 0.99 Ribosomal L28 family
GFRP                 PF06399.8     83 sp|P0A7M2|RL28_ECOLI -             78      0.12   12.0   0.0   1   1     2e-05      0.15   11.6   0.0    30    75    21    67     9    71 0.88 GTP cyclohydrolase I feedback regulatory protein (GFRP)
Ribosomal_L29        PF00831.18    58 sp|P0A7M6|RL29_ECOLI -             63   5.4e-25   86.8   6.8   1   1   1.6e-28     6e-25   86.7   6.8     1    58     3    60     3    60 0.99 Ribosomal L29 protein
MRP-L47              PF06984.8     87 sp|P0A7M6|RL29_ECOLI -             63   0.00021   21.0   3.5   1   1     7e-08   0.00026   20.8   3.5    24    86     2    59     1    60 0.93 Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
PRTP                 PF01366.13   638 sp|P0A7M6|RL29_ECOLI -             63     0.066   11.2   1.2   1   1   1.7e-05     0.062   11.2   1.2    42    90     9    59     1    63 0.85 Herpesvirus processing and transport protein
Shugoshin_N          PF07558.6     46 sp|P0A7M6|RL29_ECOLI -             63      0.37   10.5   5.8   1   2   0.00014      0.53   10.0   3.5    24    44    12    32     8    33 0.92 Shugoshin N-terminal coiled-coil region
Ribosomal_L2_C       PF03947.13   130 sp|P60422|RL2_ECOLI  -            273   2.7e-55  185.7   1.9   1   1   5.5e-59   4.1e-55  185.1   1.9     1   129   124   250   124   251 0.98 Ribosomal Proteins L2, C-terminal domain
Ribosomal_L2         PF00181.18    77 sp|P60422|RL2_ECOLI  -            273   7.6e-37  125.1   0.8   1   2   8.2e-40   6.1e-36  122.2   1.1     1    76    42   117    42   118 0.99 Ribosomal Proteins L2, RNA binding domain
Ribosomal_L30        PF00327.15    52 sp|P0AG51|RL30_ECOLI -             59   2.2e-20   71.9   0.2   1   1   1.6e-24   2.4e-20   71.8   0.2     1    51     4    54     4    55 0.95 Ribosomal protein L30p/L7e
Ribosomal_L31        PF01197.13    69 sp|P0A7N1|RL31B_ECOLI -             87   2.7e-27   94.5   0.2   1   1   2.2e-31   3.2e-27   94.2   0.2     1    68     1    79     1    80 0.99 Ribosomal protein L31
Ribosomal_L31        PF01197.13    69 sp|P0A7M9|RL31_ECOLI -             70   1.5e-30  104.9   0.2   1   1   1.1e-34   1.7e-30  104.8   0.2     1    67     1    65     1    67 0.98 Ribosomal protein L31
Ribosomal_L32p       PF01783.18    56 sp|P0A7N4|RL32_ECOLI -             57     4e-19   68.5   0.9   1   1   2.9e-23   4.3e-19   68.4   0.9     1    56     2    57     2    57 0.98 Ribosomal L32p protein family
Ribosomal_L33        PF00471.15    48 sp|P0A7N9|RL33_ECOLI -             55   9.8e-24   83.3   1.5   1   1   7.4e-28   1.1e-23   83.2   1.5     1    48     6    53     6    53 0.99 Ribosomal protein L33
Ribosomal_L34        PF00468.12    44 sp|P0A7P5|RL34_ECOLI -             46   4.8e-25   86.9   9.9   1   1   3.5e-29   5.2e-25   86.8   9.9     1    44     1    44     1    44 0.99 Ribosomal protein L34
Ribosomal_L35p       PF01632.14    61 sp|P0A7Q1|RL35_ECOLI -             65   9.8e-26   89.4   7.8   1   1   1.4e-29   1.1e-25   89.3   7.8     1    61     2    62     2    62 0.98 Ribosomal protein L35
DUF3148              PF11347.3     63 sp|P0A7Q1|RL35_ECOLI -             65      0.11   12.1   0.0   1   1   2.1e-05      0.15   11.6   0.0    24    43    44    63    36    65 0.92 Protein of unknown function (DUF3148)
Ribosomal_L36        PF00444.13    38 sp|Q2EEQ2|RL362_ECOLI -             46     2e-20   72.4   1.6   1   1   1.8e-24   2.7e-20   72.0   1.6     1    38     1    41     1    41 0.99 Ribosomal protein L36
Ribosomal_L36        PF00444.13    38 sp|P0A7Q6|RL36_ECOLI -             38     4e-21   74.7   9.2   1   1   2.9e-25   4.2e-21   74.6   9.2     1    38     1    38     1    38 1.00 Ribosomal protein L36
Ribosomal_L3         PF00297.17   263 sp|P60438|RL3_ECOLI  -            209   5.4e-50  170.2  10.0   1   1   1.6e-52   2.4e-48  164.8  10.0     1   263     8   204     8   204 0.99 Ribosomal protein L3
Ribosomal_L4         PF00573.17   192 sp|P60723|RL4_ECOLI  -            201     1e-65  220.7   1.0   1   1   7.8e-70   1.2e-65  220.5   1.0     2   191    13   198    12   199 0.99 Ribosomal protein L4/L1 family
Ribosomal_L5_C       PF00673.16    95 sp|P62399|RL5_ECOLI  -            179   3.4e-42  142.0   0.0   1   1   1.1e-45   5.4e-42  141.4   0.0     1    94    84   177    84   178 0.99 ribosomal L5P family C-terminus
Ribosomal_L5         PF00281.14    56 sp|P62399|RL5_ECOLI  -            179     3e-25   87.7   0.1   1   1   1.1e-28   5.5e-25   86.9   0.1     1    56    24    80    23    80 0.98 Ribosomal protein L5
DUF2862              PF11061.3     64 sp|P62399|RL5_ECOLI  -            179     0.091   12.4   0.1   2   2   0.00013      0.64    9.7   0.0    29    59    71   101    62   105 0.80 Protein of unknown function (DUF2862)
Ribosomal_L6         PF00347.18    77 sp|P0AG55|RL6_ECOLI  -            177   5.2e-40  135.8   0.1   1   2     4e-21     6e-17   61.9   0.0     1    77    11    82    11    82 0.98 Ribosomal protein L6
Ribosomal_L6         PF00347.18    77 sp|P0AG55|RL6_ECOLI  -            177   5.2e-40  135.8   0.1   2   2   2.3e-24   3.4e-20   72.3   0.0     1    76    90   164    90   165 0.98 Ribosomal protein L6
Ribosomal_L12        PF00542.14    68 sp|P0A7K2|RL7_ECOLI  -            121   2.1e-31  107.7   8.6   1   1   1.2e-34   4.4e-31  106.6   8.6     1    68    54   121    54   121 0.99 Ribosomal protein L7/L12 C-terminal domain
Ribosomal_S9         PF00380.14   121 sp|P0A7K2|RL7_ECOLI  -            121     0.038   14.2   1.3   1   1   1.3e-05     0.049   13.8   1.3    35    81    38    95     6   117 0.74 Ribosomal protein S9/S16
DUF1933              PF09147.5    201 sp|P0A7K2|RL7_ECOLI  -            121       0.1   12.0   0.1   1   1   2.9e-05      0.11   11.9   0.1    74   130    15    72     5   113 0.84 Domain of unknown function (DUF1933)
PTS_IIA              PF02255.11    96 sp|P0A7K2|RL7_ECOLI  -            121      0.13   12.1   2.1   2   2   4.4e-05      0.16   11.8   0.5     2    47    52    98    51   120 0.83 PTS system, Lactose/Cellobiose specific IIA subunit
Ribosomal_L9_C       PF03948.9     87 sp|P0A7R1|RL9_ECOLI  -            149   1.3e-26   92.4   1.8   1   1   2.9e-30   2.1e-26   91.7   1.8     2    87    63   149    62   149 0.97 Ribosomal protein L9, C-terminal domain
Ribosomal_L9_N       PF01281.14    48 sp|P0A7R1|RL9_ECOLI  -            149   8.3e-23   79.3   0.3   1   1   2.2e-26   1.6e-22   78.4   0.3     1    48     1    48     1    48 0.97 Ribosomal protein L9, N-terminal domain
SpoU_methylase       PF00588.14   142 sp|P63177|RLMB_ECOLI -            243   7.6e-42  142.5   0.0   2   2   1.9e-45   1.4e-41  141.6   0.0     2   142    96   236    95   236 0.96 SpoU rRNA Methylase family
SpoU_sub_bind        PF08032.7     76 sp|P63177|RLMB_ECOLI -            243   3.1e-19   68.9   0.1   1   2   2.6e-22   1.9e-18   66.3   0.1     1    72     4    76     4    80 0.96 RNA 2'-O ribose methyltransferase substrate binding
Methyltransf_31      PF13847.1    152 sp|P36999|RLMA_ECOLI -            269   1.3e-15   57.2   0.0   1   1   2.7e-18   1.7e-15   56.9   0.0     2   126    84   196    83   246 0.83 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|P36999|RLMA_ECOLI -            269   5.6e-14   52.4   0.0   1   1   5.8e-16   3.6e-13   49.8   0.0     1    94    90   175    90   176 0.95 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P36999|RLMA_ECOLI -            269   9.7e-12   45.1   0.0   1   1   3.1e-14   1.9e-11   44.1   0.0     1   100    89   171    89   172 0.87 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|P36999|RLMA_ECOLI -            269   5.7e-08   33.1   0.0   1   1   3.7e-10   2.3e-07   31.1   0.0     1    71    90   153    90   174 0.83 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|P36999|RLMA_ECOLI -            269   1.2e-07   31.5   0.0   1   1   3.1e-09   1.9e-06   27.6   0.0    11   121    73   192    62   226 0.62 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P36999|RLMA_ECOLI -            269   1.3e-07   31.6   0.1   1   1   2.5e-09   1.5e-06   28.1   0.1     3    75    88   153    86   180 0.85 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P36999|RLMA_ECOLI -            269   2.2e-07   31.4   0.0   1   1   7.7e-10   4.8e-07   30.3   0.0     4   111    88   178    85   179 0.88 Methyltransferase domain
Methyltransf_4       PF02390.12   197 sp|P36999|RLMA_ECOLI -            269   7.3e-07   28.4   0.0   1   2   3.1e-08   1.9e-05   23.7   0.0    11    63    77   129    66   135 0.88 Putative methyltransferase
MTS                  PF05175.9    170 sp|P36999|RLMA_ECOLI -            269   1.5e-05   24.4   0.0   1   1   3.7e-08   2.3e-05   23.8   0.0    25    76    80   130    72   155 0.79 Methyltransferase small domain
Ubie_methyltran      PF01209.13   233 sp|P36999|RLMA_ECOLI -            269   2.9e-05   23.3   0.0   1   1   9.6e-08   5.9e-05   22.2   0.0    46   150    84   175    66   180 0.82 ubiE/COQ5 methyltransferase family
Methyltransf_32      PF13679.1    141 sp|P36999|RLMA_ECOLI -            269   0.00038   20.1   0.0   1   1   9.2e-07   0.00057   19.5   0.0    12    77    74   133    70   169 0.82 Methyltransferase domain
DUF938               PF06080.7    204 sp|P36999|RLMA_ECOLI -            269    0.0011   18.5   0.0   1   1   2.7e-06    0.0017   17.9   0.0    11    61    71   121    64   152 0.87 Protein of unknown function (DUF938)
MetW                 PF07021.7    193 sp|P36999|RLMA_ECOLI -            269    0.0024   17.3   0.0   1   1   7.4e-06    0.0046   16.3   0.0    13    80    85   153    74   169 0.86 Methionine biosynthesis protein MetW
Methyltransf_29      PF03141.11   506 sp|P36999|RLMA_ECOLI -            269    0.0028   16.0   0.0   1   1   5.1e-06    0.0032   15.8   0.0   113   220    81   179    11   229 0.79 Putative S-adenosyl-L-methionine-dependent methyltransferase
PrmA                 PF06325.8    295 sp|P36999|RLMA_ECOLI -            269     0.003   16.7   0.0   1   1   9.7e-06     0.006   15.7   0.0   156   202    80   127    73   177 0.81 Ribosomal protein L11 methyltransferase (PrmA)
Pox_MCEL             PF03291.11   332 sp|P36999|RLMA_ECOLI -            269     0.012   14.5   0.0   1   1   4.1e-05     0.026   13.4   0.0    60   113    82   136    72   171 0.78 mRNA capping enzyme
PCMT                 PF01135.14   210 sp|P36999|RLMA_ECOLI -            269     0.017   14.6   0.0   1   1   4.6e-05     0.029   13.9   0.0    59    97    69   109    55   136 0.74 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_8       PF05148.10   219 sp|P36999|RLMA_ECOLI -            269     0.021   14.4   0.0   1   1   7.7e-05     0.048   13.2   0.0    58   154    68   174    62   184 0.64 Hypothetical methyltransferase
Methyltransf_9       PF08003.6    315 sp|P36999|RLMA_ECOLI -            269     0.032   12.9   0.0   1   1   7.5e-05     0.046   12.4   0.0   115   147    85   118    73   142 0.81 Protein of unknown function (DUF1698)
Methyltransf_2       PF00891.13   242 sp|P36999|RLMA_ECOLI -            269     0.037   13.2   0.0   1   1   0.00011     0.066   12.4   0.0   102   148    86   134    72   139 0.88 O-methyltransferase
zinc-ribbons_6       PF07191.7     70 sp|P36999|RLMA_ECOLI -            269     0.069   12.9   0.4   1   1   0.00026      0.16   11.7   0.4     3    24     4    25     2    34 0.85 zinc-ribbons
RrnaAD               PF00398.15   262 sp|P36999|RLMA_ECOLI -            269      0.13   11.2   0.0   1   1   0.00029      0.18   10.8   0.0    24    62    76   117    67   134 0.78 Ribosomal RNA adenine dimethylase
NodS                 PF05401.6    201 sp|P36999|RLMA_ECOLI -            269      0.14   11.5   0.0   1   1   0.00035      0.22   10.9   0.0    22    87    63   131    53   154 0.77 Nodulation protein S (NodS)
Rad50_zn_hook        PF04423.9     54 sp|P36999|RLMA_ECOLI -            269      0.15   11.5   0.7   1   1   0.00059      0.36   10.3   0.7    22    35     4    17     2    21 0.88 Rad50 zinc hook motif
tRNA_U5-meth_tr      PF05958.6    352 sp|P75817|RLMC_ECOLI -            375     3e-19   68.9   0.0   2   2   1.3e-19   2.5e-16   59.3   0.0   172   351   208   374   184   375 0.90 tRNA (Uracil-5-)-methyltransferase
Methyltransf_31      PF13847.1    152 sp|P75817|RLMC_ECOLI -            375   3.2e-09   36.5   0.0   1   1     3e-12   5.5e-09   35.7   0.0     5    67   235   295   233   347 0.87 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P75817|RLMC_ECOLI -            375   5.2e-07   29.6   0.0   1   1   5.2e-10   9.7e-07   28.8   0.0     4    80   237   310   234   369 0.89 Methyltransferase domain
MTS                  PF05175.9    170 sp|P75817|RLMC_ECOLI -            375   7.4e-06   25.4   0.0   1   1   6.4e-09   1.2e-05   24.7   0.0    32   108   234   310   208   329 0.84 Methyltransferase small domain
Methyltransf_18      PF12847.2    112 sp|P75817|RLMC_ECOLI -            375     1e-05   26.0   0.0   1   1   1.3e-08   2.5e-05   24.8   0.0     3    77   235   307   233   330 0.88 Methyltransferase domain
Methyltransf_15      PF09445.5    164 sp|P75817|RLMC_ECOLI -            375    0.0024   17.4   0.0   2   2   7.5e-06     0.014   14.9   0.0     4    82   237   312   234   317 0.80 RNA cap guanine-N2 methyltransferase
Cons_hypoth95        PF03602.10   183 sp|P75817|RLMC_ECOLI -            375    0.0041   16.5   0.0   1   1   3.5e-06    0.0065   15.8   0.0    41   123   232   309   216   349 0.79 Conserved hypothetical protein 95
Methyltransf_12      PF08242.7     99 sp|P75817|RLMC_ECOLI -            375      0.11   12.9   0.0   1   1   0.00011       0.2   12.1   0.0     2    57   239   289   238   305 0.79 Methyltransferase domain
tRNA_U5-meth_tr      PF05958.6    352 sp|P55135|RLMD_ECOLI -            433   8.9e-30  103.5   0.0   1   1   1.7e-31   1.3e-28   99.7   0.0    25   351   117   431    95   432 0.74 tRNA (Uracil-5-)-methyltransferase
Methyltransf_31      PF13847.1    152 sp|P55135|RLMD_ECOLI -            433   5.9e-14   51.9   0.0   1   1   1.2e-16   9.2e-14   51.2   0.0     4   111   287   391   284   424 0.79 Methyltransferase domain
TRAM                 PF01938.15    61 sp|P55135|RLMD_ECOLI -            433   3.9e-13   48.9   0.1   1   1   8.8e-16   6.5e-13   48.2   0.1     2    61    11    67    10    67 0.96 TRAM domain
Methyltransf_26      PF13659.1    117 sp|P55135|RLMD_ECOLI -            433   3.6e-10   39.9   0.1   2   2   9.4e-12     7e-09   35.7   0.0     2    81   288   367   287   423 0.87 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P55135|RLMD_ECOLI -            433   2.8e-08   34.2   0.0   1   1     9e-11   6.7e-08   33.1   0.0     1    78   286   364   286   406 0.84 Methyltransferase domain
PCMT                 PF01135.14   210 sp|P55135|RLMD_ECOLI -            433   7.5e-08   32.1   0.0   1   1     2e-10   1.5e-07   31.1   0.0    59   130   272   340   258   351 0.89 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
RrnaAD               PF00398.15   262 sp|P55135|RLMD_ECOLI -            433   1.7e-06   27.2   0.0   1   1     4e-09     3e-06   26.4   0.0    14    84   270   342   259   350 0.91 Ribosomal RNA adenine dimethylase
Met_10               PF02475.11   200 sp|P55135|RLMD_ECOLI -            433   2.8e-06   27.0   0.0   1   1   5.8e-09   4.3e-06   26.4   0.0    99   173   284   360   269   385 0.79 Met-10+ like-protein
UPF0020              PF01170.13   180 sp|P55135|RLMD_ECOLI -            433   6.1e-06   25.9   0.0   2   2   9.8e-07   0.00073   19.1   0.0    17   111   276   361   263   376 0.80 Putative RNA methylase family UPF0020
MTS                  PF05175.9    170 sp|P55135|RLMD_ECOLI -            433     2e-05   24.0   0.0   1   1   5.9e-08   4.3e-05   22.9   0.0    24    96   279   349   275   378 0.87 Methyltransferase small domain
Cons_hypoth95        PF03602.10   183 sp|P55135|RLMD_ECOLI -            433   3.4e-05   23.2   0.0   1   1   8.9e-08   6.6e-05   22.3   0.0    42   122   286   364   274   385 0.88 Conserved hypothetical protein 95
Methyltransf_23      PF13489.1    161 sp|P55135|RLMD_ECOLI -            433   0.00038   20.2   0.0   1   1   8.8e-07   0.00065   19.4   0.0    13    74   275   345   268   390 0.81 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|P55135|RLMD_ECOLI -            433    0.0004   20.8   0.0   1   1   1.3e-06   0.00097   19.5   0.0     1    65   291   361   291   365 0.94 Methyltransferase domain
Methyltransf_15      PF09445.5    164 sp|P55135|RLMD_ECOLI -            433    0.0004   19.9   0.0   1   1   2.6e-06    0.0019   17.7   0.0     3    82   289   368   287   386 0.87 RNA cap guanine-N2 methyltransferase
Methyltransf_25      PF13649.1    101 sp|P55135|RLMD_ECOLI -            433   0.00066   20.0   0.0   1   1   2.3e-06    0.0017   18.6   0.0     1    73   290   362   290   397 0.84 Methyltransferase domain
Methyltransf_4       PF02390.12   197 sp|P55135|RLMD_ECOLI -            433    0.0014   17.6   0.0   1   1   3.6e-06    0.0027   16.7   0.0    13    78   282   343   267   362 0.78 Putative methyltransferase
Ubie_methyltran      PF01209.13   233 sp|P55135|RLMD_ECOLI -            433      0.01   14.9   0.0   1   1   2.5e-05     0.018   14.1   0.0    46   118   285   358   270   363 0.79 ubiE/COQ5 methyltransferase family
PrmA                 PF06325.8    295 sp|P55135|RLMD_ECOLI -            433     0.014   14.5   0.0   1   1   4.6e-05     0.034   13.2   0.0   154   221   278   347   272   361 0.77 Ribosomal protein L11 methyltransferase (PrmA)
Methyltrans_SAM      PF10672.4    286 sp|P55135|RLMD_ECOLI -            433     0.056   12.2   0.0   1   1   0.00014       0.1   11.4   0.0   115   203   279   364   233   374 0.74 S-adenosylmethionine-dependent methyltransferase
CMAS                 PF02353.15   273 sp|P55135|RLMD_ECOLI -            433      0.15   11.1   0.0   1   1   0.00033      0.24   10.4   0.0    50    91   274   314   260   359 0.81 Mycolic acid cyclopropane synthetase
FtsJ                 PF01728.14   181 sp|P0C0R7|RLME_ECOLI -            209   1.5e-56  191.2   0.0   1   1   9.5e-60   1.8e-56  191.0   0.0     1   181    31   207    31   207 0.98 FtsJ-like methyltransferase
Methyltransf_23      PF13489.1    161 sp|P0C0R7|RLME_ECOLI -            209    0.0023   17.6   0.0   1   1     6e-06     0.011   15.4   0.0    19   118    48   168    24   192 0.76 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P0C0R7|RLME_ECOLI -            209     0.016   15.2   0.0   1   1   1.1e-05      0.02   14.8   0.0    52   113    93   163    20   167 0.80 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P0C0R7|RLME_ECOLI -            209     0.039   14.5   0.3   1   1   0.00019      0.35   11.4   0.3     2   110    52   164    51   166 0.69 Methyltransferase domain
Alba                 PF01918.16    70 sp|P0C0R7|RLME_ECOLI -            209      0.13   11.8   0.1   1   1    0.0002      0.37   10.3   0.1     3    40   163   207   162   208 0.89 Alba
Lactamase_B          PF00753.22   194 sp|P0C0R7|RLME_ECOLI -            209      0.15   11.6   0.0   1   1   9.6e-05      0.18   11.4   0.0    98   157    36    95     8   158 0.79 Metallo-beta-lactamase superfamily
NSP13                PF06460.7    300 sp|P0C0R7|RLME_ECOLI -            209      0.19   10.5   0.0   1   1   0.00011      0.21   10.4   0.0   119   206   114   203    53   206 0.76 Coronavirus NSP13
Methyltransf_10      PF05971.7    299 sp|P75782|RLMF_ECOLI -            308  5.2e-154  511.7   0.0   1   1    2e-157    6e-154  511.5   0.0     2   299     3   296     2   296 0.99 Protein of unknown function (DUF890)
MTS                  PF05175.9    170 sp|P75782|RLMF_ECOLI -            308   5.1e-05   22.7   0.0   1   1   3.8e-08   0.00011   21.6   0.0    30   115   101   195    87   205 0.77 Methyltransferase small domain
Methyltransf_23      PF13489.1    161 sp|P75782|RLMF_ECOLI -            308    0.0017   18.0   0.0   2   2   2.1e-06    0.0061   16.2   0.0     4    60    85   154    83   217 0.78 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P75782|RLMF_ECOLI -            308     0.012   15.6   0.0   1   1     7e-06     0.021   14.8   0.0     4    91   107   199    42   270 0.73 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P75782|RLMF_ECOLI -            308     0.014   15.9   0.0   1   1   9.2e-06     0.027   15.0   0.0     2    86   104   195   103   221 0.77 Methyltransferase domain
MTS                  PF05175.9    170 sp|P42596|RLMG_ECOLI -            378   2.2e-59  199.6   0.0   2   2     4e-60     5e-57  191.9   0.0     2   170   199   370   198   370 0.98 Methyltransferase small domain
Methyltransf_31      PF13847.1    152 sp|P42596|RLMG_ECOLI -            378   2.3e-14   53.2   0.0   2   2   8.1e-17     1e-13   51.1   0.0     6   117   231   347   227   371 0.84 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P42596|RLMG_ECOLI -            378   1.4e-11   44.4   0.0   1   1   2.9e-14   3.6e-11   43.1   0.0     3   115   231   340   229   342 0.88 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P42596|RLMG_ECOLI -            378     3e-11   43.8   0.0   1   1   7.5e-14   9.2e-11   42.3   0.0     3   110   230   339   229   341 0.82 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|P42596|RLMG_ECOLI -            378   1.6e-08   34.9   0.0   1   1     8e-11   9.9e-08   32.3   0.0     1    99   233   336   233   336 0.91 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P42596|RLMG_ECOLI -            378   5.7e-06   26.6   0.0   1   1   1.2e-08   1.5e-05   25.2   0.0     1   101   232   334   232   334 0.79 Methyltransferase domain
PrmA                 PF06325.8    295 sp|P42596|RLMG_ECOLI -            378   1.1e-05   24.7   0.0   2   2   3.9e-08   4.8e-05   22.6   0.0   163   232   230   305   219   327 0.74 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_23      PF13489.1    161 sp|P42596|RLMG_ECOLI -            378   1.4e-05   24.9   0.0   1   1   2.4e-08     3e-05   23.8   0.0    14   117   221   344   213   371 0.77 Methyltransferase domain
Cons_hypoth95        PF03602.10   183 sp|P42596|RLMG_ECOLI -            378   0.00013   21.4   0.0   1   1   1.9e-07   0.00023   20.5   0.0    41   152   228   339   217   361 0.73 Conserved hypothetical protein 95
Methyltransf_11      PF08241.7     95 sp|P42596|RLMG_ECOLI -            378   0.00017   22.0   0.0   1   1   5.2e-07   0.00064   20.1   0.0     1    95   233   338   233   338 0.84 Methyltransferase domain
Methyltransf_16      PF10294.4    174 sp|P42596|RLMG_ECOLI -            378   0.00023   20.6   0.1   2   2   1.4e-06    0.0017   17.8   0.0    48    93   230   276   214   289 0.82 Putative methyltransferase
Methyltransf_10      PF05971.7    299 sp|P42596|RLMG_ECOLI -            378    0.0023   17.1   0.0   1   1   3.2e-06    0.0039   16.3   0.0   106   194   232   315   221   333 0.76 Protein of unknown function (DUF890)
SPOUT_MTase          PF02590.12   155 sp|P0A8I8|RLMH_ECOLI -            155   4.8e-52  175.8   0.0   1   1   3.6e-56   5.3e-52  175.6   0.0     1   155     1   153     1   153 0.99 Predicted SPOUT methyltransferase
Methyltrans_SAM      PF10672.4    286 sp|P75876|RLMI_ECOLI -            396   5.6e-31  107.4   0.0   1   1   9.2e-34   8.1e-31  106.9   0.0    12   266   110   371   103   381 0.84 S-adenosylmethionine-dependent methyltransferase
Cons_hypoth95        PF03602.10   183 sp|P75876|RLMI_ECOLI -            396   2.4e-12   46.6   0.0   1   1   4.3e-15   3.8e-12   45.9   0.0    39   123   216   302   211   328 0.89 Conserved hypothetical protein 95
Methyltransf_31      PF13847.1    152 sp|P75876|RLMI_ECOLI -            396   1.1e-10   41.3   0.1   1   1   2.2e-13   1.9e-10   40.5   0.1    21   118   236   349   220   377 0.74 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P75876|RLMI_ECOLI -            396   1.3e-09   38.0   0.0   1   1   2.9e-12   2.5e-09   37.1   0.0     2   116   222   340   221   341 0.84 Methyltransferase domain
MTS                  PF05175.9    170 sp|P75876|RLMI_ECOLI -            396     7e-07   28.7   0.0   1   1   1.3e-09   1.1e-06   28.1   0.0    54   154   242   353   217   363 0.76 Methyltransferase small domain
Methyltransf_18      PF12847.2    112 sp|P75876|RLMI_ECOLI -            396   1.2e-06   29.1   0.0   1   1   4.8e-09   4.2e-06   27.3   0.0    12   109   231   337   220   340 0.69 Methyltransferase domain
Met_10               PF02475.11   200 sp|P75876|RLMI_ECOLI -            396   1.1e-05   25.1   0.0   1   1   1.8e-08   1.6e-05   24.5   0.0    70   182   187   306   121   323 0.85 Met-10+ like-protein
Methyltransf_15      PF09445.5    164 sp|P75876|RLMI_ECOLI -            396   0.00035   20.1   0.0   1   1   6.1e-07   0.00054   19.5   0.0     3    79   223   302   221   304 0.88 RNA cap guanine-N2 methyltransferase
Methyltransf_25      PF13649.1    101 sp|P75876|RLMI_ECOLI -            396   0.00051   20.3   0.0   1   1   1.3e-06    0.0011   19.2   0.0    25    73   244   299   227   331 0.80 Methyltransferase domain
PrmA                 PF06325.8    295 sp|P75876|RLMI_ECOLI -            396   0.00061   18.9   0.0   1   1     1e-06   0.00089   18.4   0.0   173   230   232   298   215   300 0.77 Ribosomal protein L11 methyltransferase (PrmA)
TRM                  PF02005.11   377 sp|P75876|RLMI_ECOLI -            396     0.001   18.0   0.0   1   1   1.6e-06    0.0014   17.6   0.0    44   129   215   301   204   326 0.86 N2,N2-dimethylguanosine tRNA methyltransferase
Spermine_synth       PF01564.12   246 sp|P75876|RLMI_ECOLI -            396    0.0021   17.0   0.0   1   1   3.5e-06     0.003   16.5   0.0   101   206   244   354   213   366 0.80 Spermine/spermidine synthase
Methyltransf_11      PF08241.7     95 sp|P75876|RLMI_ECOLI -            396    0.0029   18.0   0.0   1   1   1.5e-05     0.013   15.9   0.0    10    66   235   299   230   315 0.86 Methyltransferase domain
PUA                  PF01472.15    74 sp|P75876|RLMI_ECOLI -            396    0.0072   16.0   0.0   1   1   1.7e-05     0.014   15.0   0.0     3    54     5    57     3    64 0.86 PUA domain
UPF0020              PF01170.13   180 sp|P75876|RLMI_ECOLI -            396     0.019   14.5   0.0   1   1   4.3e-05     0.037   13.5   0.0    28   115   220   302   213   309 0.79 Putative RNA methylase family UPF0020
Methyltransf_10      PF05971.7    299 sp|P75876|RLMI_ECOLI -            396     0.071   12.2   0.0   1   1   0.00012       0.1   11.7   0.0   129   231   246   343   235   366 0.79 Protein of unknown function (DUF890)
Methyltransf_12      PF08242.7     99 sp|P75876|RLMI_ECOLI -            396     0.088   13.2   0.0   1   1    0.0004      0.35   11.3   0.0    20    72   243   299   224   300 0.78 Methyltransferase domain
RsmJ                 PF04378.8    245 sp|P37634|RLMJ_ECOLI -            280  4.1e-115  382.9   0.0   1   1  6.4e-119  4.8e-115  382.7   0.0     1   245    33   278    33   278 1.00 Ribosomal RNA small subunit methyltransferase D, RsmJ
Cons_hypoth95        PF03602.10   183 sp|P37634|RLMJ_ECOLI -            280    0.0032   16.8   0.0   2   3   2.6e-05      0.19   11.0   0.0    82   139   128   182    90   191 0.76 Conserved hypothetical protein 95
UPF0020              PF01170.13   180 sp|P75864|RLMKL_ECOLI -            702   2.6e-62  209.5   0.0   1   2   8.7e-60     1e-56  191.4   0.0     1   179   162   375   162   376 0.96 Putative RNA methylase family UPF0020
UPF0020              PF01170.13   180 sp|P75864|RLMKL_ECOLI -            702   2.6e-62  209.5   0.0   2   2   5.5e-06    0.0063   16.1   0.0    14   153   526   658   519   682 0.84 Putative RNA methylase family UPF0020
Methyltransf_26      PF13659.1    117 sp|P75864|RLMKL_ECOLI -            702   1.5e-26   92.7   0.0   1   2   4.2e-19   4.8e-16   58.8   0.0     4    94   193   326   190   353 0.92 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P75864|RLMKL_ECOLI -            702   1.5e-26   92.7   0.0   2   2   1.3e-10   1.4e-07   31.5   0.0    11   114   549   655   521   658 0.80 Methyltransferase domain
Methyltrans_SAM      PF10672.4    286 sp|P75864|RLMKL_ECOLI -            702     8e-21   74.1   0.1   1   1   1.2e-23   1.3e-20   73.4   0.1    24   240   437   658   427   669 0.82 S-adenosylmethionine-dependent methyltransferase
THUMP                PF02926.12   144 sp|P75864|RLMKL_ECOLI -            702   1.5e-20   73.5   0.0   1   1   2.3e-23   2.6e-20   72.7   0.0    19   143    23   153    11   154 0.94 THUMP domain
Cons_hypoth95        PF03602.10   183 sp|P75864|RLMKL_ECOLI -            702   2.6e-14   53.0   0.0   3   3   3.3e-12   3.8e-09   36.2   0.0    39   140   536   635   530   679 0.85 Conserved hypothetical protein 95
Methyltransf_31      PF13847.1    152 sp|P75864|RLMKL_ECOLI -            702   3.6e-12   46.1   0.0   2   3   2.9e-05     0.033   13.7   0.0    28    83   255   312   243   414 0.80 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P75864|RLMKL_ECOLI -            702   3.6e-12   46.1   0.0   3   3   4.7e-08   5.4e-05   22.8   0.0    31   112   564   658   538   696 0.79 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P75864|RLMKL_ECOLI -            702     7e-09   36.2   0.1   3   3   1.1e-07   0.00013   22.5   0.0    12   110   549   655   542   657 0.81 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P75864|RLMKL_ECOLI -            702   4.5e-08   33.3   0.0   1   2   0.00028      0.32   11.3   0.0     6    74   198   312   193   337 0.66 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P75864|RLMKL_ECOLI -            702   4.5e-08   33.3   0.0   2   2   2.1e-06    0.0024   18.1   0.0    24   101   561   650   544   650 0.75 Methyltransferase domain
Methyltransf_15      PF09445.5    164 sp|P75864|RLMKL_ECOLI -            702   7.2e-06   25.6   0.0   2   2   1.9e-05     0.021   14.3   0.0     5    96   543   635   540   659 0.81 RNA cap guanine-N2 methyltransferase
Methyltransf_11      PF08241.7     95 sp|P75864|RLMKL_ECOLI -            702   1.4e-05   25.4   0.0   2   2   3.4e-05     0.039   14.4   0.0    18    95   560   654   549   654 0.80 Methyltransferase domain
N6_Mtase             PF02384.11   311 sp|P75864|RLMKL_ECOLI -            702    0.0004   19.5   0.0   1   2   1.2e-05     0.013   14.5   0.0    45   138   188   315   174   322 0.86 N-6 DNA Methylase
Methyltransf_24      PF13578.1    106 sp|P75864|RLMKL_ECOLI -            702   0.00067   20.4   0.1   1   1   9.4e-06     0.011   16.5   0.0    24   103   562   654   544   656 0.77 Methyltransferase domain
FtsJ                 PF01728.14   181 sp|P0ADR6|RLMM_ECOLI -            366   1.9e-08   34.5   0.0   2   2   1.5e-11   1.1e-07   32.0   0.0     3    68   186   248   184   298 0.69 FtsJ-like methyltransferase
DUF4222              PF13973.1     53 sp|P0ADR6|RLMM_ECOLI -            366     0.002   17.5   0.1   3   3     7e-05      0.52    9.7   0.1     3    22   336   355   334   357 0.91 Domain of unknown function (DUF4222)
Radical_SAM          PF04055.16   166 sp|P36979|RLMN_ECOLI -            384   5.1e-14   52.7   0.1   1   1   3.3e-17   1.6e-13   51.1   0.1     2   158   120   289   119   299 0.75 Radical SAM superfamily
Fer4_14              PF13394.1    119 sp|P36979|RLMN_ECOLI -            384   0.00011   22.2   0.0   1   1   4.6e-08   0.00023   21.1   0.0     7    74   124   195   121   238 0.67 4Fe-4S single cluster domain
Fer4_12              PF13353.1    139 sp|P36979|RLMN_ECOLI -            384     0.028   14.5   0.0   1   1   1.1e-05     0.055   13.5   0.0    13    74   123   190   113   246 0.71 4Fe-4S single cluster domain
SPOR                 PF05036.8     76 sp|P10100|RLPA_ECOLI -            362   5.1e-17   61.7   2.1   1   1   2.5e-20   1.2e-16   60.5   2.1     1    75   287   359   287   360 0.92 Sporulation related domain
DPBB_1               PF03330.13    78 sp|P10100|RLPA_ECOLI -            362   1.8e-15   56.6   0.0   1   1   7.6e-19   3.8e-15   55.6   0.0     2    76    79   166    78   167 0.86 Rare lipoprotein A (RlpA)-like double-psi beta-barrel
LPAM_1               PF08139.7     25 sp|P10100|RLPA_ECOLI -            362     0.072   13.3   0.3   1   1   2.9e-05      0.14   12.4   0.3     8    25     3    20     1    20 0.92 Prokaryotic membrane lipoprotein lipid attachment site
PseudoU_synth_2      PF00849.17   164 sp|P0AA37|RLUA_ECOLI -            219   3.1e-30  105.1   0.0   1   1   2.6e-34   3.8e-30  104.8   0.0     1   163    22   169    22   170 0.92 RNA pseudouridylate synthase
PseudoU_synth_2      PF00849.17   164 sp|P37765|RLUB_ECOLI -            291   3.6e-16   59.4   0.0   1   1   2.9e-19   2.1e-15   56.9   0.0     2   161    69   199    68   202 0.83 RNA pseudouridylate synthase
S4                   PF01479.20    48 sp|P37765|RLUB_ECOLI -            291   1.1e-11   43.9   0.2   1   1     4e-15     3e-11   42.5   0.2     2    43     4    43     3    57 0.93 S4 domain
PseudoU_synth_2      PF00849.17   164 sp|P0AA39|RLUC_ECOLI -            319   2.8e-30  105.3   0.1   1   1   1.2e-33   4.5e-30  104.6   0.1     1   163   101   249   101   250 0.90 RNA pseudouridylate synthase
S4                   PF01479.20    48 sp|P0AA39|RLUC_ECOLI -            319   1.9e-10   40.0   0.2   1   1   9.3e-14   3.5e-10   39.1   0.2     1    48    20    66    20    66 0.96 S4 domain
DUF3603              PF12227.3    214 sp|P0AA39|RLUC_ECOLI -            319      0.03   13.4   0.0   1   1   1.4e-05     0.052   12.6   0.0    15    60    23    68     9    75 0.89 Protein of unknown function (DUF3603)
A1_Propeptide        PF07966.7     29 sp|P0AA39|RLUC_ECOLI -            319     0.038   13.7   0.1   1   1   3.4e-05      0.13   12.1   0.1    10    26   161   177   160   180 0.92 A1 Propeptide
PseudoU_synth_2      PF00849.17   164 sp|P33643|RLUD_ECOLI -            326   1.3e-31  109.6   0.1   1   1   5.4e-35     2e-31  109.0   0.1     1   164    92   242    92   242 0.96 RNA pseudouridylate synthase
S4                   PF01479.20    48 sp|P33643|RLUD_ECOLI -            326   2.6e-12   45.9   0.0   1   1   1.2e-15   4.5e-12   45.1   0.0     1    48    18    65    18    65 0.97 S4 domain
S4_2                 PF13275.1     65 sp|P33643|RLUD_ECOLI -            326    0.0026   17.3   0.2   1   1   1.5e-06    0.0057   16.2   0.2    26    60    36    70    34    74 0.92 S4 domain
TruB_N               PF01509.13   149 sp|P33643|RLUD_ECOLI -            326     0.026   14.6   0.0   1   1   1.2e-05     0.043   13.9   0.0     5    50   128   176   125   204 0.78 TruB family pseudouridylate synthase (N terminal domain)
PseudoU_synth_2      PF00849.17   164 sp|P75966|RLUE_ECOLI -            217   9.4e-15   54.8   0.2   2   2   1.6e-17   2.4e-13   50.2   0.0     2   164    41   186    40   186 0.84 RNA pseudouridylate synthase
PseudoU_synth_2      PF00849.17   164 sp|P32684|RLUF_ECOLI -            290   6.2e-16   58.6   0.1   1   1   7.2e-18   2.7e-14   53.3   0.1     2   164    69   195    68   195 0.85 RNA pseudouridylate synthase
S4                   PF01479.20    48 sp|P32684|RLUF_ECOLI -            290   2.9e-14   52.2   1.5   1   2   2.2e-17   8.3e-14   50.7   0.0     1    48     7    52     7    52 0.98 S4 domain
S4_2                 PF13275.1     65 sp|P32684|RLUF_ECOLI -            290     0.001   18.5   0.0   1   1   7.4e-07    0.0027   17.2   0.0    10    62     9    59     2    60 0.79 S4 domain
SAP25                PF15476.1    204 sp|P32684|RLUF_ECOLI -            290      0.22   11.0   0.0   1   1   8.7e-05      0.32   10.4   0.0   138   191   224   278   208   287 0.87 Histone deacetylase complex subunit SAP25
RMF                  PF04957.7     55 sp|P0AFW2|RMF_ECOLI  -             55   8.1e-31  105.4   5.3   1   1   1.2e-34   8.5e-31  105.4   5.3     1    53     1    53     1    55 0.97 Ribosome modulation factor
DUF2389              PF09493.5     60 sp|P0AFW2|RMF_ECOLI  -             55     0.072   13.3   0.1   1   1   9.9e-06     0.073   13.3   0.1    40    60    25    45     3    45 0.84 Tryptophan-rich protein (DUF2389)
NTP_transferase      PF00483.18   248 sp|P37744|RMLA1_ECOLI -            293     1e-73  247.6   0.0   1   1   2.5e-77   1.2e-73  247.4   0.0     1   246     5   241     5   243 0.99 Nucleotidyl transferase
NTP_transf_3         PF12804.2    160 sp|P37744|RMLA1_ECOLI -            293   4.6e-10   39.7   0.0   1   1   1.2e-13   5.8e-10   39.4   0.0     1   125     6   140     6   200 0.75 MobA-like NTP transferase domain
IspD                 PF01128.14   221 sp|P37744|RMLA1_ECOLI -            293    0.0011   18.5   0.0   1   1   4.4e-07    0.0022   17.5   0.0     4    65     7    70     5    78 0.89 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
NTP_transferase      PF00483.18   248 sp|P61887|RMLA2_ECOLI -            293   1.3e-72  244.0   0.0   1   1   3.1e-76   1.5e-72  243.8   0.0     1   246     2   238     2   240 0.98 Nucleotidyl transferase
NTP_transf_3         PF12804.2    160 sp|P61887|RMLA2_ECOLI -            293   5.4e-09   36.3   0.0   1   1   1.5e-12   7.3e-09   35.9   0.0     1   120     3   133     3   170 0.83 MobA-like NTP transferase domain
IspD                 PF01128.14   221 sp|P61887|RMLA2_ECOLI -            293    0.0007   19.1   0.0   1   1   2.2e-07    0.0011   18.5   0.0     4    65     4    67     1    75 0.88 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Epimerase            PF01370.16   236 sp|P27830|RMLB2_ECOLI -            355   4.2e-79  265.2   0.0   1   1   2.8e-82   5.1e-79  265.0   0.0     1   236     4   252     4   252 0.97 NAD dependent epimerase/dehydratase family
RmlD_sub_bind        PF04321.12   287 sp|P27830|RMLB2_ECOLI -            355   2.3e-17   62.8   0.0   1   1   1.7e-20   3.2e-17   62.3   0.0     2   254     3   296     1   333 0.79 RmlD substrate binding domain
Polysacc_synt_2      PF02719.10   294 sp|P27830|RMLB2_ECOLI -            355   2.2e-16   59.6   0.0   1   1   1.7e-19   3.2e-16   59.0   0.0     1   117     4   114     4   135 0.93 Polysaccharide biosynthesis protein
3Beta_HSD            PF01073.14   280 sp|P27830|RMLB2_ECOLI -            355     1e-15   57.1   0.0   1   1   8.9e-19   1.7e-15   56.5   0.0     1   229     5   240     5   250 0.82 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4        PF07993.7    249 sp|P27830|RMLB2_ECOLI -            355   2.8e-15   55.9   0.1   1   2   2.8e-05     0.053   12.4   0.0     1    26     6    30     6    38 0.86 Male sterility protein
NAD_binding_4        PF07993.7    249 sp|P27830|RMLB2_ECOLI -            355   2.8e-15   55.9   0.1   2   2   3.3e-14   6.2e-11   41.7   0.0    87   199    74   191    56   250 0.83 Male sterility protein
adh_short            PF00106.20   167 sp|P27830|RMLB2_ECOLI -            355   4.7e-08   33.1   0.4   1   2   4.1e-10   7.6e-07   29.1   0.1     3    96     4    91     2   126 0.79 short chain dehydrogenase
Saccharop_dh         PF03435.13   386 sp|P27830|RMLB2_ECOLI -            355   0.00047   19.2   0.1   1   1   4.2e-07   0.00078   18.5   0.1     2    76     5    83     4    91 0.82 Saccharopine dehydrogenase
KR                   PF08659.5    181 sp|P27830|RMLB2_ECOLI -            355    0.0014   18.2   0.0   1   1   2.3e-06    0.0043   16.7   0.0     3    85     4    78     3    93 0.81 KR domain
Epimerase            PF01370.16   236 sp|P37759|RMLB1_ECOLI -            361   2.5e-80  269.3   0.1   1   1   1.7e-83   3.1e-80  269.0   0.1     1   236     3   259     3   259 0.97 NAD dependent epimerase/dehydratase family
RmlD_sub_bind        PF04321.12   287 sp|P37759|RMLB1_ECOLI -            361   1.5e-16   60.1   0.0   1   1   1.4e-19   2.6e-16   59.3   0.0     1   283     1   332     1   336 0.84 RmlD substrate binding domain
3Beta_HSD            PF01073.14   280 sp|P37759|RMLB1_ECOLI -            361   5.9e-15   54.7   0.0   1   1   5.3e-18   9.9e-15   53.9   0.0     1   224     4   242     4   253 0.80 3-beta hydroxysteroid dehydrogenase/isomerase family
Polysacc_synt_2      PF02719.10   294 sp|P37759|RMLB1_ECOLI -            361   7.7e-15   54.5   0.0   1   2   1.1e-17   2.1e-14   53.1   0.0     1   117     3   113     3   122 0.86 Polysaccharide biosynthesis protein
NAD_binding_4        PF07993.7    249 sp|P37759|RMLB1_ECOLI -            361   1.8e-14   53.3   0.0   1   1   3.1e-16   5.7e-13   48.3   0.0     1   197     5   196     5   251 0.78 Male sterility protein
adh_short            PF00106.20   167 sp|P37759|RMLB1_ECOLI -            361   6.9e-08   32.5   0.8   1   2   7.3e-10   1.4e-06   28.3   0.1     3   121     3   110     2   124 0.78 short chain dehydrogenase
KR                   PF08659.5    181 sp|P37759|RMLB1_ECOLI -            361   0.00024   20.8   0.1   1   1   4.1e-07   0.00077   19.1   0.1     3    89     3    81     2    95 0.85 KR domain
Saccharop_dh         PF03435.13   386 sp|P37759|RMLB1_ECOLI -            361     0.073   12.0   0.1   1   1     6e-05      0.11   11.4   0.1     2    77     4    83     3   110 0.80 Saccharopine dehydrogenase
dTDP_sugar_isom      PF00908.12   177 sp|P37745|RMLC_ECOLI -            185   3.1e-76  254.6   0.0   1   1   2.4e-80   3.5e-76  254.4   0.0     2   176     4   177     3   178 0.97 dTDP-4-dehydrorhamnose 3,5-epimerase
RmlD_sub_bind        PF04321.12   287 sp|P37760|RMLD_ECOLI -            299  2.2e-110  368.0   0.0   1   1  6.6e-114  2.4e-110  367.9   0.0     1   285     1   293     1   295 0.98 RmlD substrate binding domain
Epimerase            PF01370.16   236 sp|P37760|RMLD_ECOLI -            299   5.1e-17   62.0   0.0   1   1   1.8e-20   6.7e-17   61.7   0.0     1   200     3   179     3   228 0.88 NAD dependent epimerase/dehydratase family
Polysacc_synt_2      PF02719.10   294 sp|P37760|RMLD_ECOLI -            299   3.4e-08   32.7   0.1   1   1   5.4e-11     2e-07   30.2   0.1    51   164    28   154     1   164 0.79 Polysaccharide biosynthesis protein
NAD_binding_4        PF07993.7    249 sp|P37760|RMLD_ECOLI -            299     2e-07   30.2   0.0   1   1   7.8e-11   2.9e-07   29.6   0.0    87   201    54   160    35   210 0.79 Male sterility protein
RmuC                 PF02646.11   305 sp|P0AG71|RMUC_ECOLI -            475  7.9e-112  373.0   2.2   2   2    9e-115  7.9e-112  373.0   2.2     1   304   135   437   135   438 0.99 RmuC family
DUF2981              PF11200.3    318 sp|P0AG71|RMUC_ECOLI -            475     0.072   12.1   0.0   1   1   0.00014      0.12   11.4   0.0    96   167   333   409   315   421 0.79 Protein of unknown function (DUF2981)
LMP                  PF04778.7    157 sp|P0AG71|RMUC_ECOLI -            475     0.078   12.7  10.3   1   2   0.00014      0.13   12.0   4.4     7    79    33   109    27   121 0.76 LMP repeated region
DUF2899              PF11449.3    298 sp|P0AG71|RMUC_ECOLI -            475      0.13   11.4   0.2   1   2   0.00074      0.64    9.1   0.2   102   164     3    69     1    92 0.84 Protein of unknown function (DUF2899)
PspB                 PF06667.7     75 sp|P0AG71|RMUC_ECOLI -            475      0.17   11.8  11.3   1   2   0.00015      0.13   12.2   2.1     1    48     1    46     1   128 0.89 Phage shock protein B
DUF1049              PF06305.6     68 sp|P0AG71|RMUC_ECOLI -            475      0.23   10.9   0.1   1   1   0.00027      0.23   10.9   0.1    22    64     6    49     3    55 0.74 Protein of unknown function (DUF1049)
DUF1043              PF06295.7    128 sp|P0AG71|RMUC_ECOLI -            475      0.33   10.5   0.1   1   3   0.00038      0.33   10.5   0.1     1    61     8    67     8    75 0.76 Protein of unknown function (DUF1043)
Tropomyosin_1        PF12718.2    143 sp|P0AG71|RMUC_ECOLI -            475      0.73    9.6  28.3   1   3   0.00047      0.41   10.4  12.2    43   125    31   112    23   122 0.62 Tropomyosin like
DUF2458              PF10454.4    150 sp|P0AG71|RMUC_ECOLI -            475       1.1    9.1  16.3   2   2   9.2e-05      0.08   12.8   8.6    11   108    82   193    73   200 0.67 Protein of unknown function (DUF2458)
Sec2p                PF06428.6    101 sp|P0AG71|RMUC_ECOLI -            475       1.2    9.0  15.6   2   2   0.00022      0.19   11.5   5.7     4    92    95   182    92   197 0.80 GDP/GTP exchange factor Sec2p
CENP-F_leu_zip       PF10473.4    140 sp|P0AG71|RMUC_ECOLI -            475         4    7.3  23.2   1   1    0.0011      0.92    9.3  18.0    23   137    29   147    24   150 0.78 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
Prefoldin_3          PF13758.1     99 sp|P0AG71|RMUC_ECOLI -            475       6.7    6.5  12.4   1   1   0.00054      0.47   10.2   5.0     2    88    50   139    49   150 0.78 Prefoldin subunit
RNB                  PF00773.14   325 sp|P30850|RNB_ECOLI  -            644   3.9e-82  276.1   0.0   1   1   1.3e-85   4.9e-82  275.8   0.0     1   324   189   516   189   517 0.95 RNB domain
OB_RNB               PF08206.6     58 sp|P30850|RNB_ECOLI  -            644   3.5e-19   68.0   0.0   1   1   2.5e-22   9.3e-19   66.6   0.0     1    57    24    80    24    81 0.95 Ribonuclease B OB domain
S1                   PF00575.18    74 sp|P30850|RNB_ECOLI  -            644   2.3e-12   46.7   1.0   2   2   7.5e-13   2.8e-09   36.9   0.3     4    69   560   638   557   640 0.78 S1 RNA binding domain
PilZ                 PF07238.9    102 sp|P30850|RNB_ECOLI  -            644     0.023   14.7   0.0   2   2   5.8e-05      0.21   11.5   0.0    22    42   561   582   554   642 0.72 PilZ domain
DNA_pol_A_exo1       PF01612.15   176 sp|P09155|RND_ECOLI  -            375   1.4e-47  161.4   0.0   1   1   3.6e-51   2.6e-47  160.5   0.0     1   174     3   169     3   171 0.99 3'-5' exonuclease
HRDC                 PF00570.18    68 sp|P09155|RND_ECOLI  -            375   6.7e-15   54.5   0.1   2   2   3.6e-18   2.7e-14   52.6   0.0     1    68   213   279   213   279 0.98 HRDC domain
RNase_E_G            PF10150.4    271 sp|P21513|RNE_ECOLI  -           1061  9.8e-101  336.5   0.0   1   1  2.6e-104  9.8e-101  336.5   0.0     1   270   121   392   121   393 0.98 Ribonuclease E/G family
PNPase_C             PF12111.3     39 sp|P21513|RNE_ECOLI  -           1061   5.4e-18   63.9   8.5   2   2   1.5e-21   5.4e-18   63.9   8.5     1    39  1021  1059  1021  1059 0.98 Polyribonucleotide phosphorylase C terminal
S1                   PF00575.18    74 sp|P21513|RNE_ECOLI  -           1061   1.5e-16   60.2   0.0   1   1   8.4e-20   3.1e-16   59.2   0.0     2    73    36   118    35   119 0.97 S1 RNA binding domain
RNase_E_G            PF10150.4    271 sp|P0A9J0|RNG_ECOLI  -            489  3.9e-113  377.1   2.0   2   2  6.1e-117  4.5e-113  376.9   1.1     1   271   124   394   124   394 0.99 Ribonuclease E/G family
S1                   PF00575.18    74 sp|P0A9J0|RNG_ECOLI  -            489   4.4e-17   61.9   0.3   1   2   3.8e-20   2.8e-16   59.3   0.0     3    73    37   121    35   122 0.97 S1 RNA binding domain
RNase_HII            PF01351.13   198 sp|P10442|RNH2_ECOLI -            198   6.8e-58  195.5   0.0   1   1   5.2e-62   7.6e-58  195.4   0.0     1   197    13   189    13   190 0.99 Ribonuclease HII
RNase_H              PF00075.19   132 sp|P0A7Y4|RNH_ECOLI  -            155     2e-41  141.4   0.0   1   1   1.5e-45   2.2e-41  141.2   0.0     2   131     3   141     2   142 0.92 RNase H
Ribonuclease_T2      PF00445.13   189 sp|P21338|RNI_ECOLI  -            268   4.8e-32  111.0   0.0   1   1   4.4e-36   6.6e-32  110.6   0.0     1   181    34   238    34   246 0.81 Ribonuclease T2 family
GreA_GreB            PF01272.14    77 sp|P0AFW4|RNK_ECOLI  -            136   2.1e-18   65.7   0.0   1   1   3.9e-22   2.9e-18   65.3   0.0     2    77    50   126    49   126 0.97 Transcription elongation factor, GreA/GreB, C-term
Rnk_N                PF14760.1     42 sp|P0AFW4|RNK_ECOLI  -            136   2.4e-13   49.8   0.5   1   2   3.3e-17   2.4e-13   49.8   0.5     1    41     3    43     3    44 0.97 Rnk N-terminus
Ribonuclease_P       PF00825.13   111 sp|P0A7Y8|RNPA_ECOLI -            119   8.3e-32  109.3   0.6   1   1   6.3e-36   9.3e-32  109.2   0.6     1   109     6   111     6   113 0.99 Ribonuclease P
RNase_PH             PF01138.16   132 sp|P0CG19|RNPH_ECOLI -            228   6.5e-27   94.4   0.0   1   1   1.4e-30   1.1e-26   93.7   0.0     1   129    10   140    10   142 0.93 3' exoribonuclease family, domain 1
RNase_PH_C           PF03725.10    68 sp|P0CG19|RNPH_ECOLI -            228   6.8e-12   45.1   0.8   1   1   1.8e-15   1.4e-11   44.1   0.8     1    65   157   221   157   223 0.96 3' exoribonuclease family, domain 2
RNB                  PF00773.14   325 sp|P21499|RNR_ECOLI  -            813  9.6e-106  353.7   0.0   1   1  6.5e-109  1.4e-105  353.2   0.0     1   325   260   588   260   588 0.97 RNB domain
OB_RNB               PF08206.6     58 sp|P21499|RNR_ECOLI  -            813   1.7e-29  101.0   9.4   1   4     4e-25   8.5e-22   76.4   0.1     1    58    87   144    87   144 0.99 Ribonuclease B OB domain
OB_RNB               PF08206.6     58 sp|P21499|RNR_ECOLI  -            813   1.7e-29  101.0   9.4   2   4   4.5e-09   9.4e-06   25.0   0.0     6    58   158   213   156   213 0.96 Ribonuclease B OB domain
S1                   PF00575.18    74 sp|P21499|RNR_ECOLI  -            813   9.2e-20   70.5   0.4   1   1   1.2e-22   2.5e-19   69.1   0.4     2    73   641   724   640   725 0.98 S1 RNA binding domain
HTH_12               PF08461.5     66 sp|P21499|RNR_ECOLI  -            813   1.8e-13   49.9   0.8   1   1   1.9e-16     4e-13   48.8   0.8     2    64    23    83    22    85 0.93 Ribonuclease R winged-helix domain
RNA_pol_Rbc25        PF08292.7    122 sp|P21499|RNR_ECOLI  -            813     0.015   15.4   0.1   1   1   3.7e-05     0.078   13.1   0.1     3    89   643   735   642   806 0.81 RNA polymerase III subunit Rpc25
Rho_RNA_bind         PF07497.7     78 sp|P21499|RNR_ECOLI  -            813     0.017   14.7   0.3   1   2   4.1e-05     0.087   12.4   0.0     4    40    86   117    84   129 0.81 Rho termination factor, RNA-binding domain
RNase_T              PF00929.19   164 sp|P30014|RNT_ECOLI  -            215     1e-36  126.6   0.1   1   1   1.6e-40   1.2e-36  126.4   0.1     1   164    20   194    20   194 0.96 Exonuclease
FTSW_RODA_SPOVE      PF01098.14   359 sp|P0ABG7|RODA_ECOLI -            370  4.2e-124  413.9  28.7   1   1  3.4e-128  5.1e-124  413.6  28.7     3   358    20   364    17   365 0.96 Cell cycle protein
DUF4115              PF13464.1     77 sp|P27434|RODZ_ECOLI -            337   6.7e-22   76.9   0.0   1   1   7.9e-25   1.7e-21   75.6   0.0     1    76   255   329   255   330 0.98 Domain of unknown function (DUF4115)
HTH_25               PF13413.1     62 sp|P27434|RODZ_ECOLI -            337   5.2e-16   58.0   0.5   1   1   3.9e-19   8.2e-16   57.3   0.5     1    62    18    79    18    79 0.94 Helix-turn-helix domain
HTH_19               PF12844.2     64 sp|P27434|RODZ_ECOLI -            337   1.6e-10   40.9   0.0   1   1   1.2e-13   2.5e-10   40.2   0.0     1    63    16    84    16    85 0.90 Helix-turn-helix domain
HTH_31               PF13560.1     64 sp|P27434|RODZ_ECOLI -            337   2.9e-10   40.1   0.7   1   1   3.8e-13     8e-10   38.7   0.7     2    61    15    79    14    81 0.90 Helix-turn-helix domain
HTH_3                PF01381.17    55 sp|P27434|RODZ_ECOLI -            337   8.4e-08   31.9   0.0   1   1   7.4e-11   1.6e-07   31.0   0.0     1    35    19    53    19    57 0.92 Helix-turn-helix
TspO_MBR             PF03073.10   148 sp|P27434|RODZ_ECOLI -            337      0.03   13.8   0.2   1   1   2.2e-05     0.048   13.1   0.2    38    69   111   142   101   148 0.82 TspO/MBR family
Sigma54_CBD          PF04963.8    194 sp|P24255|RP54_ECOLI -            477   3.9e-74  248.2   0.9   1   2   1.3e-77   3.9e-74  248.2   0.9     2   194   107   304   106   304 0.97 Sigma-54 factor, core binding domain
Sigma54_DBD          PF04552.8    160 sp|P24255|RP54_ECOLI -            477   2.8e-70  234.9   0.4   1   1     2e-73   5.9e-70  233.8   0.4     2   160   317   475   316   475 0.99 Sigma-54, DNA binding domain
Sigma54_AID          PF00309.15    49 sp|P24255|RP54_ECOLI -            477   8.4e-19   66.7  20.7   1   1   6.3e-22   1.9e-18   65.6  20.7     1    47     3    49     3    51 0.97 Sigma-54 factor, Activator interacting domain (AID)
HTH_38               PF13936.1     44 sp|P24255|RP54_ECOLI -            477     0.039   13.5   0.0   1   1   3.1e-05     0.093   12.2   0.0    21    39   365   383   358   384 0.88 Helix-turn-helix domain
Ribul_P_3_epim       PF00834.14   201 sp|P0AG07|RPE_ECOLI  -            225   1.8e-93  311.2   0.0   1   1   9.8e-97   2.1e-93  311.0   0.0     2   200     6   205     5   206 0.99 Ribulose-phosphate 3 epimerase family
QRPTase_C            PF01729.14   169 sp|P0AG07|RPE_ECOLI  -            225   2.4e-06   27.1   0.1   3   3   5.6e-07    0.0012   18.4   0.0   110   158   154   202   126   208 0.83 Quinolinate phosphoribosyl transferase, C-terminal domain
FMN_dh               PF01070.13   357 sp|P0AG07|RPE_ECOLI  -            225    0.0029   16.5   1.3   2   2   0.00027      0.57    8.9   0.0   263   318   151   202   146   222 0.75 FMN-dependent dehydrogenase
His_biosynth         PF00977.16   229 sp|P0AG07|RPE_ECOLI  -            225     0.006   15.8   0.0   1   1   4.6e-06    0.0097   15.1   0.0    64   113   161   210   149   223 0.76 Histidine biosynthesis protein
PcrB                 PF01884.12   231 sp|P0AG07|RPE_ECOLI  -            225     0.012   14.8   1.2   3   3   3.9e-05     0.082   12.1   0.1   176   227   165   215   149   222 0.77 PcrB family
TMP-TENI             PF02581.12   180 sp|P0AG07|RPE_ECOLI  -            225     0.014   14.4   0.0   2   2     6e-05      0.13   11.4   0.0   134   180   151   202   123   202 0.85 Thiamine monophosphate synthase/TENI
UBACT                PF02134.16    67 sp|P0AG07|RPE_ECOLI  -            225      0.09   12.3   0.0   1   1   8.6e-05      0.18   11.3   0.0    22    54    57    90    55   100 0.87 Repeat in ubiquitin-activating (UBA) protein
Rib_5-P_isom_A       PF06026.9    173 sp|P0A7Z0|RPIA_ECOLI -            219   2.4e-63  212.5   0.5   1   1   3.9e-67   2.9e-63  212.2   0.5     3   173    49   215    47   215 0.98 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
DeoRC                PF00455.17   162 sp|P0A7Z0|RPIA_ECOLI -            219   8.2e-05   22.2   0.1   1   2   1.2e-07   0.00089   18.9   0.0     3    41     3    41     1    51 0.91 DeoR C terminal sensor domain
LacAB_rpiB           PF02502.13   140 sp|P37351|RPIB_ECOLI -            149   2.2e-54  182.9   0.1   1   1   1.7e-58   2.5e-54  182.7   0.1     1   139     3   141     3   142 0.99 Ribose/Galactose Isomerase
RNA_pol_A_CTD        PF03118.10    67 sp|P0A7Z4|RPOA_ECOLI -            329   1.2e-25   88.7   0.1   1   1   5.7e-29   2.1e-25   87.8   0.1     2    66   244   308   243   309 0.95 Bacterial RNA polymerase, alpha chain C terminal domain
RNA_pol_A_bac        PF01000.21   112 sp|P0A7Z4|RPOA_ECOLI -            329   6.5e-24   84.2   0.2   1   1     4e-27   1.5e-23   83.0   0.1     2   110    60   156    58   186 0.90 RNA polymerase Rpb3/RpoA insert domain
RNA_pol_L            PF01193.19    66 sp|P0A7Z4|RPOA_ECOLI -            329   1.4e-22   78.5   0.0   1   1   6.4e-26   2.4e-22   77.8   0.0     1    65    28   228    28   229 0.97 RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_L_2          PF13656.1     77 sp|P0A7Z4|RPOA_ECOLI -            329   2.2e-05   23.8   0.0   1   2    0.0001      0.37   10.2   0.0    11    34    36    60    33    70 0.79 RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_L_2          PF13656.1     77 sp|P0A7Z4|RPOA_ECOLI -            329   2.2e-05   23.8   0.0   2   2   7.9e-05      0.29   10.5   0.0    28    73   187   231   184   234 0.83 RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_Rpb2_6       PF00562.23   386 sp|P0A8V2|RPOB_ECOLI -           1342  4.5e-162  539.2   0.0   1   2   0.00037      0.78    8.4   0.0     2    33   663   694   662   700 0.88 RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_6       PF00562.23   386 sp|P0A8V2|RPOB_ECOLI -           1342  4.5e-162  539.2   0.0   2   2  3.5e-162  7.5e-159  528.5   0.1     2   386   716  1264   715  1264 0.98 RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7       PF04560.15    82 sp|P0A8V2|RPOB_ECOLI -           1342     2e-32  111.2   0.0   1   1   3.5e-35   7.4e-32  109.4   0.1     1    81  1266  1341  1266  1342 0.98 RNA polymerase Rpb2, domain 7
RNA_pol_Rpb2_3       PF04565.11    68 sp|P0A8V2|RPOB_ECOLI -           1342   7.7e-30  102.4   0.0   1   1   8.6e-33   1.8e-29  101.2   0.0     1    68   513   582   513   582 0.98 RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_45      PF10385.4     66 sp|P0A8V2|RPOB_ECOLI -           1342     5e-29   99.9   0.3   1   1   1.8e-31   3.8e-28   97.0   0.3     1    66   591   656   591   656 1.00 RNA polymerase beta subunit external 1 domain
RNA_pol_Rpb2_1       PF04563.10   203 sp|P0A8V2|RPOB_ECOLI -           1342   1.6e-26   92.4   0.0   1   1   1.6e-29   3.4e-26   91.4   0.0     2   203    27   509    26   509 0.98 RNA polymerase beta subunit
RNA_pol_Rpb2_2       PF04561.9    190 sp|P0A8V2|RPOB_ECOLI -           1342   1.7e-25   89.5   0.9   1   3   9.8e-11   2.1e-07   30.5   0.0     1    74   151   225   151   276 0.82 RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_2       PF04561.9    190 sp|P0A8V2|RPOB_ECOLI -           1342   1.7e-25   89.5   0.9   2   3   2.2e-18   4.8e-15   55.4   0.1    80   190   340   454   329   454 0.88 RNA polymerase Rpb2, domain 2
DUF4140              PF13600.1    104 sp|P0A8V2|RPOB_ECOLI -           1342       1.8    9.0   6.5   1   1   0.00017      0.37   11.2   0.3    11    90   887   968   884   971 0.75 N-terminal domain of unknown function (DUF4140)
RNA_pol_Rpb1_1       PF04997.7    337 sp|P0A8T7|RPOC_ECOLI -           1407  2.3e-100  336.1   0.0   1   1  1.8e-103  5.2e-100  334.9   0.0     2   337    15   342    14   342 0.95 RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_5       PF04998.12   277 sp|P0A8T7|RPOC_ECOLI -           1407   1.2e-80  270.7   0.0   1   1     8e-84   2.4e-80  269.7   0.0     1   276   766  1321   766  1322 1.00 RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_2       PF00623.15   166 sp|P0A8T7|RPOC_ECOLI -           1407   3.8e-51  173.3   0.0   1   1   3.4e-53     1e-49  168.6   0.0     1   166   344   486   344   486 0.95 RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3       PF04983.13   158 sp|P0A8T7|RPOC_ECOLI -           1407   1.6e-27   96.1   0.0   1   1   1.3e-30   3.9e-27   94.9   0.0     1   158   489   644   489   644 0.93 RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4       PF05000.12   108 sp|P0A8T7|RPOC_ECOLI -           1407   1.7e-18   66.2   0.3   1   1   5.8e-22   1.7e-18   66.2   0.3     2   107   674   763   673   764 0.83 RNA polymerase Rpb1, domain 4
Sigma70_ner          PF04546.8    211 sp|P00579|RPOD_ECOLI -            613     3e-81  272.0   6.8   2   2   1.4e-84     3e-81  272.0   6.8     1   211   137   348   137   348 0.96 Sigma-70, non-essential region
Sigma70_r1_1         PF03979.9     82 sp|P00579|RPOD_ECOLI -            613   4.7e-30  103.3   5.0   1   1   2.2e-33   4.7e-30  103.3   5.0     2    81     2    80     1    81 0.96 Sigma-70 factor, region 1.1
Sigma70_r3           PF04539.11    78 sp|P00579|RPOD_ECOLI -            613   7.6e-29   99.4   1.1   1   2   3.6e-32   7.6e-29   99.4   1.1     1    77   458   534   458   535 0.97 Sigma-70 region 3
Sigma70_r2           PF04542.9     71 sp|P00579|RPOD_ECOLI -            613   1.9e-23   81.8   0.3   1   1   2.7e-26   5.7e-23   80.3   0.3     1    71   379   449   379   449 0.98 Sigma-70 region 2
Sigma70_r4           PF04545.11    50 sp|P00579|RPOD_ECOLI -            613   2.3e-19   68.4   0.8   4   4   1.1e-22   2.3e-19   68.4   0.8     1    50   547   600   547   600 0.98 Sigma-70, region 4
Sigma70_r1_2         PF00140.15    37 sp|P00579|RPOD_ECOLI -            613   8.5e-15   54.1   0.7   1   2   2.5e-17   5.3e-14   51.5   0.1     1    32    95   126    95   130 0.96 Sigma-70 factor, region 1.2
CENP-B_dimeris       PF09026.5    101 sp|P00579|RPOD_ECOLI -            613     0.034   14.3   6.5   1   1   5.4e-05      0.11   12.6   6.5     8    58   182   233   176   256 0.64 Centromere protein B dimerisation domain
Sigma70_r4_2         PF08281.7     54 sp|P0AGB6|RPOE_ECOLI -            191   1.4e-19   69.2   0.2   1   1   1.3e-22     4e-19   67.8   0.2     2    53   129   180   122   181 0.95 Sigma-70, region 4
Sigma70_r2           PF04542.9     71 sp|P0AGB6|RPOE_ECOLI -            191   6.8e-18   64.0   0.2   1   1   4.5e-21   1.3e-17   63.1   0.2     1    71    25    92    25    92 0.96 Sigma-70 region 2
Sigma70_r4           PF04545.11    50 sp|P0AGB6|RPOE_ECOLI -            191   2.2e-10   39.6   0.0   1   1   1.8e-13   5.3e-10   38.4   0.0     2    47   135   180   134   182 0.95 Sigma-70, region 4
Sigma70_ECF          PF07638.6    185 sp|P0AGB6|RPOE_ECOLI -            191   9.6e-09   35.1   0.1   1   1     1e-11   3.1e-08   33.5   0.1     7   181    10   183     3   186 0.71 ECF sigma factor
HTH_23               PF13384.1     50 sp|P0AGB6|RPOE_ECOLI -            191   0.00016   21.2   0.0   1   1   1.3e-07    0.0004   19.9   0.0     4    40   140   177   137   184 0.80 Homeodomain-like domain
Sigma70_r2           PF04542.9     71 sp|P0AGB3|RPOH_ECOLI -            284     5e-19   67.6   0.0   1   1   1.1e-21   9.9e-19   66.7   0.0     1    70    53   122    53   123 0.97 Sigma-70 region 2
Sigma70_r4           PF04545.11    50 sp|P0AGB3|RPOH_ECOLI -            284   3.9e-18   64.4   1.1   2   2   1.1e-19   9.9e-17   59.9   0.3     1    50   228   280   228   280 0.97 Sigma-70, region 4
Opi1                 PF08618.5    427 sp|P0AGB3|RPOH_ECOLI -            284    0.0009   18.2   0.7   2   2   0.00046      0.41    9.5   1.0   101   234   137   279   118   284 0.67 Transcription factor Opi1
Sigma70_r1_2         PF00140.15    37 sp|P0AGB3|RPOH_ECOLI -            284     0.022   14.4   0.0   1   1   6.7e-05     0.059   13.0   0.0    15    35    27    47    16    49 0.79 Sigma-70 factor, region 1.2
HTH_10               PF04967.7     53 sp|P0AGB3|RPOH_ECOLI -            284     0.027   14.0   0.0   2   2   0.00038      0.33   10.5   0.0    19    51   246   278   244   280 0.91 HTH DNA binding domain
HTH_AsnC-type        PF13404.1     42 sp|P0AGB3|RPOH_ECOLI -            284     0.042   13.3   0.3   2   2   0.00048      0.42   10.1   0.1    12    35   245   268   232   269 0.89 AsnC-type helix-turn-helix domain
RHH_1                PF01402.16    39 sp|P0AGB3|RPOH_ECOLI -            284     0.046   13.6   0.2   1   1   0.00052      0.45   10.4   0.1     6    24   245   263   245   265 0.95 Ribbon-helix-helix protein, copG family
HTH_31               PF13560.1     64 sp|P0AGB3|RPOH_ECOLI -            284     0.054   13.7   1.4   2   2   0.00057      0.49   10.6   0.2    15    37   251   273   220   281 0.89 Helix-turn-helix domain
HTH_3                PF01381.17    55 sp|P0AGB3|RPOH_ECOLI -            284      0.06   13.1   0.1   1   1   0.00039      0.34   10.7   0.0    11    32   252   273   246   282 0.87 Helix-turn-helix
GerE                 PF00196.14    58 sp|P0AGB3|RPOH_ECOLI -            284       0.1   11.9   0.0   1   1   0.00084      0.74    9.1   0.0    21    48   253   280   232   282 0.92 Bacterial regulatory proteins, luxR family
HTH_25               PF13413.1     62 sp|P0AGB3|RPOH_ECOLI -            284      0.11   12.1   5.1   3   3   0.00036      0.31   10.6   0.1    10    41   250   281   247   284 0.89 Helix-turn-helix domain
2Fe-2S_thioredx      PF01257.14   145 sp|P0AGB3|RPOH_ECOLI -            284      0.16   11.5   0.0   1   1   0.00056      0.49    9.9   0.0    10    51   130   171   122   173 0.85 Thioredoxin-like [2Fe-2S] ferredoxin
Sigma70_r2           PF04542.9     71 sp|P13445|RPOS_ECOLI -            330   4.6e-23   80.6   0.1   1   1   2.7e-26     1e-22   79.5   0.1     1    71    94   164    94   164 0.97 Sigma-70 region 2
Sigma70_r3           PF04539.11    78 sp|P13445|RPOS_ECOLI -            330     2e-21   75.6   9.6   2   3     1e-23   3.8e-20   71.5   2.0     2    77   174   249   173   250 0.97 Sigma-70 region 3
Sigma70_r4           PF04545.11    50 sp|P13445|RPOS_ECOLI -            330   4.6e-17   61.0   3.7   2   2   5.2e-19   1.9e-15   55.8   2.9     1    50   262   315   262   315 0.97 Sigma-70, region 4
Sigma70_r1_2         PF00140.15    37 sp|P13445|RPOS_ECOLI -            330   2.7e-12   46.1   0.1   1   1   2.2e-15   8.2e-12   44.5   0.1     2    35    56    89    55    91 0.95 Sigma-70 factor, region 1.2
RNA_pol_Rpb6         PF01192.17    57 sp|P0A800|RPOZ_ECOLI -             91   1.1e-17   63.4   0.1   1   1   9.7e-22   1.4e-17   63.1   0.1     1    56     7    62     7    63 0.95 RNA polymerase Rpb6
NUDIX                PF00293.23   135 sp|P0A776|RPPH_ECOLI -            176   3.9e-25   88.0   0.1   1   1   6.4e-29   4.7e-25   87.7   0.1     1   134     7   149     7   150 0.96 NUDIX domain
NUDIX_4              PF14815.1    114 sp|P0A776|RPPH_ECOLI -            176     0.016   14.6   0.2   1   2   5.1e-06     0.038   13.4   0.0     3    56    14    64    12    79 0.88 NUDIX domain
Methyltransf_6       PF03737.10   154 sp|P0A8R0|RRAA_ECOLI -            161   4.7e-55  185.6   0.4   1   1   3.5e-59   5.2e-55  185.5   0.4     1   153     1   152     1   153 0.99 Demethylmenaquinone methyltransferase
RraB                 PF06877.6    104 sp|P0AF90|RRAB_ECOLI -            138     2e-34  118.3   1.1   1   1   3.4e-38   2.5e-34  118.0   1.1     2   104    10   113     9   113 0.98 Regulator of ribonuclease activity B
Imm15                PF15590.1     69 sp|P0AF90|RRAB_ECOLI -            138      0.12   11.4   1.0   1   1   4.5e-05      0.33   10.0   1.0     9    35    88   121    85   135 0.78 Immunity protein 15
RRF                  PF01765.14   165 sp|P0A805|RRF_ECOLI  -            185   4.2e-68  227.9   1.7   1   1   1.1e-71   5.5e-68  227.6   1.7     1   165    19   183    19   183 0.99 Ribosome recycling factor
DUF2525              PF10733.4     58 sp|P0A805|RRF_ECOLI  -            185     0.036   13.8   0.1   1   1   1.7e-05     0.083   12.7   0.1     4    27   141   163   138   178 0.80 Protein of unknown function (DUF2525)
PRTP                 PF01366.13   638 sp|P0A805|RRF_ECOLI  -            185     0.041   11.8   0.5   1   1   8.6e-06     0.043   11.8   0.5   411   487   108   183    52   185 0.72 Herpesvirus processing and transport protein
Ribosomal_S10        PF00338.17    97 sp|P0A7R5|RS10_ECOLI -            103   4.4e-38  129.0   0.1   1   1   3.3e-42   4.9e-38  128.8   0.1     1    96     6   101     6   102 0.99 Ribosomal protein S10p/S20e
Ribosomal_S11        PF00411.14   110 sp|P0A7R9|RS11_ECOLI -            129   6.1e-50  168.0   0.2   1   1   4.9e-54   7.2e-50  167.7   0.2     1   110    19   128    19   128 0.99 Ribosomal protein S11
Ribosom_S12_S23      PF00164.20   122 sp|P0A7S3|RS12_ECOLI -            124   3.4e-56  187.9   2.1   1   1   2.5e-60   3.8e-56  187.7   2.1     2   122     3   123     2   123 0.99 Ribosomal protein S12/S23
Ribosomal_S13        PF00416.17   107 sp|P0A7S9|RS13_ECOLI -            118   1.6e-39  134.6   0.4   1   1   2.4e-43   1.8e-39  134.5   0.4     1   107     3   108     3   108 0.99 Ribosomal protein S13/S18
FbpA                 PF05833.6    455 sp|P0A7S9|RS13_ECOLI -            118      0.02   13.4   0.0   1   1   3.1e-06     0.023   13.2   0.0   191   239    17    64     5    81 0.86 Fibronectin-binding protein A N-terminus (FbpA)
Ribosomal_S14        PF00253.16    55 sp|P0AG59|RS14_ECOLI -            101   9.8e-25   85.7   0.7   1   1     9e-29   1.3e-24   85.2   0.7     1    55    46   100    46   100 0.98 Ribosomal protein S14p/S29e
Ribosomal_S15        PF00312.17    83 sp|P0ADZ4|RS15_ECOLI -             89   5.2e-35  119.0   0.9   1   1   1.2e-38   5.8e-35  118.9   0.9     2    83     7    88     6    88 0.98 Ribosomal protein S15
FliJ                 PF02050.11   123 sp|P0ADZ4|RS15_ECOLI -             89     0.025   14.6   0.3   1   1   5.8e-06     0.029   14.4   0.3    41   109    16    84     5    85 0.88 Flagellar FliJ protein
Stirrup              PF09061.1     79 sp|P0ADZ4|RS15_ECOLI -             89     0.081   12.8   0.1   1   1   2.1e-05       0.1   12.5   0.1     6    79     2    83     1    83 0.70 Stirrup
Ribosomal_S16        PF00886.14    62 sp|P0A7T3|RS16_ECOLI -             82   6.9e-26   89.7   0.1   1   1   5.5e-30   8.2e-26   89.5   0.1     1    62     8    68     8    68 0.96 Ribosomal protein S16
Ribosomal_S17        PF00366.15    69 sp|P0AG63|RS17_ECOLI -             84   1.2e-32  111.7   1.3   1   1   9.4e-37   1.4e-32  111.5   1.3     1    69    10    78    10    78 0.99 Ribosomal protein S17
Ribosomal_S18        PF01084.15    54 sp|P0A7T7|RS18_ECOLI -             75   2.9e-25   87.8   0.5   1   1   4.8e-29   3.6e-25   87.5   0.5     2    54    16    68    15    68 0.96 Ribosomal protein S18
MerR_1               PF13411.1     69 sp|P0A7T7|RS18_ECOLI -             75      0.02   14.6   0.2   1   1   3.9e-06     0.029   14.1   0.2    15    52    27    65    17    71 0.92 MerR HTH family regulatory protein
Ribosomal_S19        PF00203.16    81 sp|P0A7U3|RS19_ECOLI -             92   2.4e-38  129.6   0.1   1   1   1.9e-42   2.8e-38  129.3   0.1     1    81     3    83     3    83 0.99 Ribosomal protein S19
S1                   PF00575.18    74 sp|P0AG67|RS1_ECOLI  -            557  4.2e-117  382.3  33.3   1   6   6.1e-15   1.1e-11   44.5   0.9     3    73    19    86    17    87 0.95 S1 RNA binding domain
S1                   PF00575.18    74 sp|P0AG67|RS1_ECOLI  -            557  4.2e-117  382.3  33.3   2   6   1.1e-16     2e-13   50.1   0.7     3    74   103   171   101   171 0.96 S1 RNA binding domain
S1                   PF00575.18    74 sp|P0AG67|RS1_ECOLI  -            557  4.2e-117  382.3  33.3   3   6   2.7e-27     5e-24   84.1   0.3     2    74   189   260   188   260 0.97 S1 RNA binding domain
S1                   PF00575.18    74 sp|P0AG67|RS1_ECOLI  -            557  4.2e-117  382.3  33.3   4   6   3.4e-25   6.3e-22   77.4   0.3     2    74   274   347   273   347 0.97 S1 RNA binding domain
S1                   PF00575.18    74 sp|P0AG67|RS1_ECOLI  -            557  4.2e-117  382.3  33.3   5   6   9.9e-24   1.8e-20   72.7   0.8     2    74   361   434   360   434 0.98 S1 RNA binding domain
S1                   PF00575.18    74 sp|P0AG67|RS1_ECOLI  -            557  4.2e-117  382.3  33.3   6   6   1.2e-24   2.3e-21   75.6   0.6     3    74   449   520   447   520 0.98 S1 RNA binding domain
DUF1344              PF07076.6     61 sp|P0AG67|RS1_ECOLI  -            557      0.18   11.4  10.1   4   5   0.00053      0.98    9.0   0.0     5    24   454   473   451   488 0.92 Protein of unknown function (DUF1344)
Ribosomal_S20p       PF01649.13    84 sp|P0A7U7|RS20_ECOLI -             87   2.8e-32  110.9  16.0   1   1   8.2e-36     3e-32  110.8  16.0     1    84     2    85     2    85 0.99 Ribosomal protein S20
SGS                  PF05002.10    82 sp|P0A7U7|RS20_ECOLI -             87     0.082   12.6   0.7   1   1   3.3e-05      0.12   12.1   0.7    11    53    13    55     2    60 0.75 SGS domain
Colicin-DNase        PF12639.2    110 sp|P0A7U7|RS20_ECOLI -             87      0.13   12.5   2.2   1   1   3.8e-05      0.14   12.3   2.2    22    72     7    57     1    84 0.79 DNase/tRNase domain of colicin-like bacteriocin
Ribosomal_S21        PF01165.15    57 sp|P68679|RS21_ECOLI -             71   3.5e-24   84.0   8.1   1   2   2.3e-28   3.5e-24   84.0   8.1     2    57     3    58     2    59 0.97 Ribosomal protein S21
Ribosomal_S2         PF00318.15   211 sp|P0A7V0|RS2_ECOLI  -            241   1.5e-85  285.7   0.0   1   1   2.3e-89   1.7e-85  285.5   0.0     1   211     9   225     9   225 0.99 Ribosomal protein S2
DUF3189              PF11385.3    148 sp|P0A7V0|RS2_ECOLI  -            241      0.12   11.9   0.1   1   2   6.3e-05      0.47   10.0   0.0    61   108    35    81    33   124 0.78 Protein of unknown function (DUF3189)
Ribosomal_S3_C       PF00189.15    85 sp|P0A7V3|RS3_ECOLI  -            233   3.6e-35  120.0   0.3   2   2   4.3e-38   1.3e-34  118.2   0.1     1    85   119   202   119   202 0.96 Ribosomal protein S3, C-terminal domain
KH_2                 PF07650.12    78 sp|P0A7V3|RS3_ECOLI  -            233   8.1e-20   70.1   3.4   1   1   5.6e-23   1.7e-19   69.1   3.4     1    78    38   111    38   111 0.97 KH domain
KH_4                 PF13083.1     73 sp|P0A7V3|RS3_ECOLI  -            233   0.00024   20.7   0.1   1   1     2e-07   0.00059   19.4   0.1     4    58    39    91    36    96 0.76 KH domain
KH_1                 PF00013.24    60 sp|P0A7V3|RS3_ECOLI  -            233      0.04   13.5   0.7   1   1   4.8e-05      0.14   11.7   0.7     2    27    64    89    63    91 0.91 KH domain
MRP-S24              PF14955.1    136 sp|P0A7V3|RS3_ECOLI  -            233      0.12   12.2   0.0   1   1   6.7e-05       0.2   11.5   0.0    29    88    12    68     3    76 0.82 Mitochondrial ribosome subunit S24
Ribosomal_S4         PF00163.14    94 sp|P0A7V8|RS4_ECOLI  -            206   4.4e-28   97.4   1.6   1   1     9e-32   4.4e-28   97.4   1.6     1    94     2    95     2    95 0.97 Ribosomal protein S4/S9 N-terminal domain
S4                   PF01479.20    48 sp|P0A7V8|RS4_ECOLI  -            206   7.3e-20   70.1   0.2   1   1   2.8e-23   1.4e-19   69.2   0.2     2    48    97   143    96   143 0.99 S4 domain
S4_2                 PF13275.1     65 sp|P0A7V8|RS4_ECOLI  -            206    0.0029   17.1   0.2   1   1   1.2e-06    0.0058   16.1   0.2    24    60   112   148   105   156 0.88 S4 domain
Ribosomal_S5_C       PF03719.10    74 sp|P0A7W1|RS5_ECOLI  -            167   5.5e-32  108.8   1.4   1   1   1.9e-35   9.4e-32  108.1   1.4     1    74    85   158    85   158 0.98 Ribosomal protein S5, C-terminal domain
Ribosomal_S5         PF00333.15    67 sp|P0A7W1|RS5_ECOLI  -            167   7.2e-32  108.9   1.8   1   1   2.7e-35   1.4e-31  108.0   1.8     1    66    10    75    10    76 0.98 Ribosomal protein S5, N-terminal domain
SpoOE-like           PF09388.5     45 sp|P0A7W1|RS5_ECOLI  -            167     0.071   12.6   0.0   1   1   3.5e-05      0.17   11.3   0.0     2    25    60    84    59    85 0.87 Spo0E like sporulation regulatory protein
Ribosomal_S6         PF01250.12    92 sp|P02358|RS6_ECOLI  -            135   3.9e-33  113.1   0.1   1   1   7.1e-37   5.2e-33  112.7   0.1     1    91     2    91     2    92 0.98 Ribosomal protein S6
DUF2313              PF10076.4    179 sp|P02358|RS6_ECOLI  -            135    0.0016   17.8   0.0   1   2   2.3e-05      0.17   11.2   0.0   136   178    23    64     9    65 0.88 Uncharacterized protein conserved in bacteria (DUF2313)
DUF2313              PF10076.4    179 sp|P02358|RS6_ECOLI  -            135    0.0016   17.8   0.0   2   2   2.9e-05      0.22   10.9   0.0   138   178    25    64    21   100 0.90 Uncharacterized protein conserved in bacteria (DUF2313)
Ribosomal_S7         PF00177.16   148 sp|P02359|RS7_ECOLI  -            179     5e-62  207.8   1.6   1   1   3.9e-66   5.8e-62  207.6   1.6     1   148     1   149     1   149 0.99 Ribosomal protein S7p/S5e
Ribosomal_S8         PF00410.14   129 sp|P0A7W7|RS8_ECOLI  -            130   2.5e-48  163.1   0.0   1   1   1.8e-52   2.7e-48  163.0   0.0     1   128     5   129     5   130 0.97 Ribosomal protein S8
Ribosomal_S9         PF00380.14   121 sp|P0A7X3|RS9_ECOLI  -            130   1.5e-47  160.8   2.1   1   1   1.1e-51   1.7e-47  160.6   2.1     1   121    10   130    10   130 1.00 Ribosomal protein S9/S16
Rsd_AlgQ             PF04353.8    153 sp|P0AFX4|RSD_ECOLI  -            158   5.5e-50  169.0   0.4   1   1   8.3e-54   6.2e-50  168.8   0.4     1   150     1   148     1   151 0.98 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
FragX_IP             PF05994.6    820 sp|P0AFX4|RSD_ECOLI  -            158   0.00059   17.7   0.0   1   1   9.1e-08   0.00067   17.5   0.0   507   616    27   143    17   154 0.78 Cytoplasmic Fragile-X interacting family
RseA_N               PF03872.8     87 sp|P0AFX7|RSEA_ECOLI -            216   1.9e-32  111.3   0.6   1   3   3.9e-36   1.9e-32  111.3   0.6     1    87     1    89     1    89 0.98 Anti sigma-E protein RseA, N-terminal domain
RseA_C               PF03873.8     53 sp|P0AFX7|RSEA_ECOLI -            216   4.3e-27   93.7   3.7   2   2   8.6e-31   4.3e-27   93.7   3.7     1    53   131   186   131   186 0.98 Anti sigma-E protein RseA, C-terminal domain
RskA                 PF10099.4    175 sp|P0AFX7|RSEA_ECOLI -            216     0.015   15.0   8.6   1   1   7.3e-06     0.036   13.7   7.6     7    69    57   133    54   182 0.73 Anti-sigma-K factor rskA
MucB_RseB            PF03888.9    285 sp|P0AFX9|RSEB_ECOLI -            318  3.2e-123  410.3   0.0   1   1  2.5e-127  3.6e-123  410.1   0.0     1   284    31   314    31   315 0.99 MucB/RseB family
Peptidase_M50        PF02163.17   192 sp|P0AEH1|RSEP_ECOLI -            450     3e-70  235.1   0.3   1   1   1.1e-73   3.4e-70  234.9   0.3     2   192    11   446    10   446 0.99 Peptidase family M50
PDZ                  PF00595.19    81 sp|P0AEH1|RSEP_ECOLI -            450     9e-13   48.2   0.3   2   2   1.6e-13   4.8e-10   39.4   0.0     8    81   209   277   203   277 0.91 PDZ domain (Also known as DHR or GLGF)
PDZ_2                PF13180.1     82 sp|P0AEH1|RSEP_ECOLI -            450     8e-11   41.6   0.0   2   2   1.9e-11   5.6e-08   32.5   0.0    19    78   227   285   211   287 0.84 PDZ domain
Tricorn_PDZ          PF14685.1     88 sp|P0AEH1|RSEP_ECOLI -            450   4.3e-05   23.2   0.1   2   2   9.5e-06     0.028   14.1   0.0    31    80   233   280   226   286 0.87 Tricorn protease PDZ domain
Peptidase_M50B       PF13398.1    200 sp|P0AEH1|RSEP_ECOLI -            450      0.17   11.2   0.1   1   3   5.7e-05      0.17   11.2   0.1    24    48    18    42     2    70 0.81 Peptidase M50B-like
RseC_MucC            PF04246.7    135 sp|P46187|RSEC_ECOLI -            159   7.8e-41  138.8   1.0   1   1   6.4e-45   9.5e-41  138.5   1.0     1   134     8   141     8   142 0.99 Positive regulator of sigma(E), RseC/MucC
DUF258               PF03193.11   161 sp|P39286|RSGA_ECOLI -            350   2.8e-55  185.8   0.0   1   1     4e-58   3.9e-55  185.4   0.0     2   161   174   334   173   334 0.97 Protein of unknown function, DUF258
FeoB_N               PF02421.13   156 sp|P39286|RSGA_ECOLI -            350   1.6e-06   27.4   0.2   1   2   2.2e-05     0.022   14.0   0.2   103   155   150   204   121   205 0.82 Ferrous iron transport protein B
FeoB_N               PF02421.13   156 sp|P39286|RSGA_ECOLI -            350   1.6e-06   27.4   0.2   2   2   0.00015      0.15   11.3   0.0     5    27   212   234   209   293 0.63 Ferrous iron transport protein B
MMR_HSR1             PF01926.18   116 sp|P39286|RSGA_ECOLI -            350   1.2e-05   25.2   0.0   1   1   2.8e-08   2.8e-05   24.0   0.0     3    59   211   272   210   337 0.74 50S ribosome-binding GTPase
GTP_EFTU             PF00009.22   188 sp|P39286|RSGA_ECOLI -            350   8.1e-05   22.1   0.5   1   2   3.3e-06    0.0032   16.9   0.0   111   183   141   206   110   210 0.72 Elongation factor Tu GTP binding domain
ABC_tran             PF00005.22   137 sp|P39286|RSGA_ECOLI -            350    0.0008   19.7   1.4   2   2   6.8e-06    0.0067   16.7   0.2    11    37   207   233   203   256 0.85 ABC transporter
AAA_29               PF13555.1     62 sp|P39286|RSGA_ECOLI -            350    0.0013   18.2   0.0   1   1   2.6e-06    0.0026   17.2   0.0    11    44   194   228   186   231 0.80 P-loop containing region of AAA domain
cobW                 PF02492.14   178 sp|P39286|RSGA_ECOLI -            350    0.0018   17.7   0.6   2   2   0.00053      0.52    9.7   0.1     3    39   210   241   208   256 0.85 CobW/HypB/UreG, nucleotide-binding domain
Miro                 PF08477.8    119 sp|P39286|RSGA_ECOLI -            350    0.0054   17.2   0.0   1   1     2e-05      0.02   15.3   0.0     5    26   213   238   208   273 0.76 Miro-like protein
AAA_21               PF13304.1    303 sp|P39286|RSGA_ECOLI -            350    0.0078   16.2   0.1   1   1   1.3e-05     0.013   15.4   0.1     1    36   209   240   209   260 0.75 AAA domain
AAA_16               PF13191.1    185 sp|P39286|RSGA_ECOLI -            350     0.028   14.4   0.1   1   1   5.2e-05     0.051   13.5   0.1    20    45   203   228   192   240 0.84 AAA ATPase domain
IIGP                 PF05049.8    376 sp|P39286|RSGA_ECOLI -            350      0.08   11.7   0.0   1   1   0.00013      0.13   11.0   0.0    35    86   208   262   184   272 0.63 Interferon-inducible GTPase (IIGP)
AAA_22               PF13401.1    131 sp|P39286|RSGA_ECOLI -            350     0.087   12.9   0.3   1   1   0.00029      0.29   11.2   0.0     4    28   207   231   202   267 0.72 AAA domain
AAA_25               PF13481.1    194 sp|P39286|RSGA_ECOLI -            350      0.12   11.8   0.1   1   1   0.00029      0.29   10.5   0.1    32    54   206   228   198   231 0.86 AAA domain
Dynamin_N            PF00350.18   168 sp|P39286|RSGA_ECOLI -            350      0.13   12.1   1.7   1   1   0.00039      0.38   10.5   1.7     4    21   213   230   210   347 0.92 Dynamin family
RrnaAD               PF00398.15   262 sp|P06992|RSMA_ECOLI -            273     2e-77  259.7   0.0   1   1   1.5e-81   2.3e-77  259.5   0.0     3   261    10   265     8   266 0.98 Ribosomal RNA adenine dimethylase
Nol1_Nop2_Fmu        PF01189.12   283 sp|P36929|RSMB_ECOLI -            429  1.4e-104  349.5   0.0   1   1  1.5e-107  1.7e-104  349.1   0.0     1   282   164   426   164   427 0.99 NOL1/NOP2/sun family
NusB                 PF01029.13   134 sp|P36929|RSMB_ECOLI -            429   6.2e-26   90.9   0.0   1   1   8.7e-29   9.9e-26   90.3   0.0     1   134     5   127     5   127 0.97 NusB family
Methyltransf_26      PF13659.1    117 sp|P36929|RSMB_ECOLI -            429   9.2e-11   41.8   0.0   1   1   1.6e-13   1.8e-10   40.8   0.0     2   116   248   375   247   376 0.90 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P36929|RSMB_ECOLI -            429   3.4e-10   40.4   0.0   1   1   5.3e-13   6.1e-10   39.6   0.0     2   112   247   375   246   375 0.84 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P36929|RSMB_ECOLI -            429   2.4e-09   36.9   0.0   1   1   3.9e-12   4.4e-09   36.0   0.0     2   113   245   380   244   416 0.82 Methyltransferase domain
MTS                  PF05175.9    170 sp|P36929|RSMB_ECOLI -            429   1.5e-06   27.7   0.0   1   1   2.5e-09   2.8e-06   26.8   0.0    25   151   240   385   229   397 0.86 Methyltransferase small domain
FtsJ                 PF01728.14   181 sp|P36929|RSMB_ECOLI -            429   9.9e-05   22.3   0.0   1   1   1.6e-07   0.00018   21.5   0.0    19    99   242   323   233   400 0.61 FtsJ-like methyltransferase
Methyltransf_25      PF13649.1    101 sp|P36929|RSMB_ECOLI -            429     0.001   19.3   0.0   1   1   2.3e-06    0.0026   18.0   0.0     1    59   250   305   250   351 0.85 Methyltransferase domain
Methyltransf_5       PF01795.14   310 sp|P36929|RSMB_ECOLI -            429    0.0016   17.8   0.0   1   1   2.4e-06    0.0028   17.0   0.0    10   100   236   322   232   330 0.87 MraW methylase family
Cons_hypoth95        PF03602.10   183 sp|P36929|RSMB_ECOLI -            429    0.0024   17.2   0.0   1   1   4.1e-06    0.0047   16.3   0.0    35   129   241   330   232   346 0.74 Conserved hypothetical protein 95
Methyltransf_15      PF09445.5    164 sp|P36929|RSMB_ECOLI -            429     0.013   15.1   0.0   1   1   1.8e-05      0.02   14.4   0.0     3    52   249   300   247   332 0.86 RNA cap guanine-N2 methyltransferase
Ubie_methyltran      PF01209.13   233 sp|P36929|RSMB_ECOLI -            429     0.046   12.8   0.0   1   1   8.1e-05     0.092   11.8   0.0    41    98   240   296   233   304 0.86 ubiE/COQ5 methyltransferase family
MTS_N                PF08468.6    155 sp|P39406|RSMC_ECOLI -            343   2.4e-62  209.3   0.0   1   1   5.6e-65   3.3e-62  208.8   0.0     1   155     8   162     8   162 1.00 Methyltransferase small domain N-terminal
MTS                  PF05175.9    170 sp|P39406|RSMC_ECOLI -            343   2.1e-61  206.2   0.0   1   1   5.8e-64   3.4e-61  205.5   0.0     2   170   167   333   166   333 0.99 Methyltransferase small domain
Methyltransf_26      PF13659.1    117 sp|P39406|RSMC_ECOLI -            343   4.8e-13   49.1   1.2   1   1   9.9e-16   5.9e-13   48.8   0.1     2   111   198   299   197   305 0.84 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P39406|RSMC_ECOLI -            343     8e-13   48.2   0.0   1   1     2e-15   1.2e-12   47.6   0.0     4   111   197   304   194   338 0.88 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P39406|RSMC_ECOLI -            343   1.6e-10   41.5   0.0   1   1   5.9e-13   3.5e-10   40.4   0.0     3   109   198   301   196   304 0.83 Methyltransferase domain
PrmA                 PF06325.8    295 sp|P39406|RSMC_ECOLI -            343   8.4e-09   34.9   0.0   1   1   2.2e-11   1.3e-08   34.3   0.0   161   232   196   268   184   269 0.85 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_12      PF08242.7     99 sp|P39406|RSMC_ECOLI -            343     1e-08   35.5   0.0   1   1   4.1e-11   2.5e-08   34.3   0.0     1    99   201   299   201   299 0.87 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|P39406|RSMC_ECOLI -            343   8.1e-08   32.6   0.0   1   1   2.6e-10   1.5e-07   31.7   0.0     1    94   201   300   201   301 0.90 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P39406|RSMC_ECOLI -            343     8e-07   29.3   0.1   1   1   6.8e-09     4e-06   27.1   0.0     1   101   200   297   200   297 0.83 Methyltransferase domain
NodS                 PF05401.6    201 sp|P39406|RSMC_ECOLI -            343   9.9e-06   25.0   0.0   2   2   6.4e-07   0.00038   19.9   0.0    33   112   186   267   181   302 0.75 Nodulation protein S (NodS)
FmrO                 PF07091.6    251 sp|P39406|RSMC_ECOLI -            343   1.2e-05   24.3   0.0   1   1   3.1e-08   1.8e-05   23.8   0.0   107   168   198   259   187   266 0.91 Ribosomal RNA methyltransferase (FmrO)
Methyltransf_23      PF13489.1    161 sp|P39406|RSMC_ECOLI -            343     3e-05   23.8   0.1   1   1   1.4e-07   8.2e-05   22.3   0.0    15   111   191   299   183   317 0.74 Methyltransferase domain
Methyltransf_16      PF10294.4    174 sp|P39406|RSMC_ECOLI -            343    0.0044   16.4   0.0   1   1   2.5e-05     0.015   14.7   0.0    46   100   196   249   185   259 0.85 Putative methyltransferase
UPF0020              PF01170.13   180 sp|P39406|RSMC_ECOLI -            343    0.0057   16.2   0.0   1   1   1.4e-05    0.0082   15.7   0.0    32   133   200   289   187   333 0.78 Putative RNA methylase family UPF0020
Ubie_methyltran      PF01209.13   233 sp|P39406|RSMC_ECOLI -            343     0.011   14.8   0.0   1   1   3.6e-05     0.022   13.9   0.0    45   152   194   302   184   329 0.76 ubiE/COQ5 methyltransferase family
Cons_hypoth95        PF03602.10   183 sp|P39406|RSMC_ECOLI -            343     0.015   14.7   0.0   1   1   3.9e-05     0.023   14.0   0.0    34   136   190   281   164   294 0.78 Conserved hypothetical protein 95
Methyltransf_2       PF00891.13   242 sp|P39406|RSMC_ECOLI -            343     0.018   14.2   0.0   1   1   5.4e-05     0.032   13.4   0.0   104   154   199   250   192   258 0.83 O-methyltransferase
Methyltransf_10      PF05971.7    299 sp|P39406|RSMC_ECOLI -            343     0.023   13.8   0.0   1   1   9.6e-05     0.057   12.5   0.0   103   197   197   281   182   298 0.75 Protein of unknown function (DUF890)
GidB                 PF02527.10   184 sp|P39406|RSMC_ECOLI -            343     0.023   13.8   0.0   1   1   6.7e-05      0.04   13.0   0.0    43    80   191   228   168   234 0.82 rRNA small subunit methyltransferase G
tRNA_U5-meth_tr      PF05958.6    352 sp|P39406|RSMC_ECOLI -            343     0.046   12.4   0.0   1   1   0.00011     0.066   11.8   0.0   193   244   193   246   174   256 0.89 tRNA (Uracil-5-)-methyltransferase
RrnaAD               PF00398.15   262 sp|P39406|RSMC_ECOLI -            343     0.058   12.4   0.0   1   1   0.00014     0.085   11.8   0.0    24    70   190   238   185   276 0.77 Ribosomal RNA adenine dimethylase
TehB                 PF03848.9    192 sp|P39406|RSMC_ECOLI -            343     0.077   12.1   0.0   1   1    0.0002      0.12   11.5   0.0    30   152   196   321   186   332 0.77 Tellurite resistance protein TehB
CMAS                 PF02353.15   273 sp|P39406|RSMC_ECOLI -            343     0.078   12.0   0.0   1   1   0.00019      0.11   11.5   0.0    64   133   198   267   185   297 0.77 Mycolic acid cyclopropane synthetase
Methyltransf_4       PF02390.12   197 sp|P39406|RSMC_ECOLI -            343      0.13   11.2   0.0   1   1   0.00039      0.23   10.4   0.0    15    57   192   234   178   247 0.78 Putative methyltransferase
Cons_hypoth95        PF03602.10   183 sp|P0ADX9|RSMD_ECOLI -            198   1.8e-61  206.7   0.0   1   1   9.5e-65     2e-61  206.5   0.0     1   183    12   188    12   188 0.95 Conserved hypothetical protein 95
Methyltransf_26      PF13659.1    117 sp|P0ADX9|RSMD_ECOLI -            198   1.3e-05   25.2   0.0   1   1   7.5e-09   1.6e-05   24.9   0.0     3    82    55   132    53   183 0.85 Methyltransferase domain
MTS                  PF05175.9    170 sp|P0ADX9|RSMD_ECOLI -            198   9.7e-05   21.8   0.0   1   1   6.3e-08   0.00013   21.3   0.0    31   113    52   136    35   146 0.83 Methyltransferase small domain
MethyltransfD12      PF02086.10   260 sp|P0ADX9|RSMD_ECOLI -            198    0.0042   16.5   0.0   2   2   0.00017      0.36   10.2   0.0   150   189    92   132    74   153 0.76 D12 class N6 adenine-specific DNA methyltransferase
RrnaAD               PF00398.15   262 sp|P0ADX9|RSMD_ECOLI -            198    0.0076   15.3   0.0   1   1   4.9e-06      0.01   14.8   0.0    33    92    55   117    46   128 0.88 Ribosomal RNA adenine dimethylase
Methyltransf_4       PF02390.12   197 sp|P0ADX9|RSMD_ECOLI -            198     0.086   11.8   0.0   1   1   5.5e-05      0.12   11.4   0.0    49    87    81   119    45   131 0.89 Putative methyltransferase
Methyltransf_31      PF13847.1    152 sp|P0ADX9|RSMD_ECOLI -            198     0.098   12.2   0.0   1   1   5.5e-05      0.12   12.0   0.0     6   100    55   142    52   190 0.77 Methyltransferase domain
Methyltrans_RNA      PF04452.9    225 sp|P0AGL7|RSME_ECOLI -            243   5.5e-74  248.0   0.0   1   1   4.2e-78   6.2e-74  247.9   0.0     3   225    20   237    18   237 0.98 RNA methyltransferase
Nol1_Nop2_Fmu        PF01189.12   283 sp|P76273|RSMF_ECOLI -            479  3.2e-110  367.9   0.0   1   2   2.6e-30   4.3e-27   95.2   0.0    12   177    40   208    29   209 0.88 NOL1/NOP2/sun family
Nol1_Nop2_Fmu        PF01189.12   283 sp|P76273|RSMF_ECOLI -            479  3.2e-110  367.9   0.0   2   2   2.9e-86   4.8e-83  278.8   0.0     9   282   199   478   199   479 0.99 NOL1/NOP2/sun family
Nol1_Nop2_Fmu_2      PF13636.1    102 sp|P76273|RSMF_ECOLI -            479   6.2e-23   80.8   0.0   1   1   6.6e-26   1.1e-22   80.0   0.0     3   102   366   468   364   468 0.91 pre-rRNA processing and ribosome biogenesis
Methyltransf_26      PF13659.1    117 sp|P76273|RSMF_ECOLI -            479   1.9e-06   27.9   0.1   1   1   3.2e-09   5.2e-06   26.4   0.1     2   116   119   247   118   248 0.87 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P76273|RSMF_ECOLI -            479   3.3e-06   27.6   0.0   1   1   3.6e-09     6e-06   26.8   0.0     3   112   119   247   117   247 0.87 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P76273|RSMF_ECOLI -            479   7.7e-06   25.5   0.0   1   1   7.8e-09   1.3e-05   24.8   0.0     4   122   118   258   116   285 0.83 Methyltransferase domain
MTS                  PF05175.9    170 sp|P76273|RSMF_ECOLI -            479    0.0027   17.0   0.0   1   1     3e-06     0.005   16.2   0.0    31   137   117   243    89   265 0.79 Methyltransferase small domain
FtsJ                 PF01728.14   181 sp|P76273|RSMF_ECOLI -            479    0.0058   16.6   0.0   1   1     6e-06    0.0098   15.8   0.0    23   145   117   252    95   270 0.69 FtsJ-like methyltransferase
PCMT                 PF01135.14   210 sp|P76273|RSMF_ECOLI -            479     0.027   14.0   0.0   1   1   3.1e-05      0.05   13.1   0.0    73   150   117   195    98   200 0.88 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Ubie_methyltran      PF01209.13   233 sp|P76273|RSMF_ECOLI -            479      0.13   11.3   0.0   1   1   0.00021      0.34    9.9   0.0    46   107   116   177   109   193 0.89 ubiE/COQ5 methyltransferase family
GidB                 PF02527.10   184 sp|P0A6U5|RSMG_ECOLI -            207     8e-67  223.9   0.0   1   1   2.6e-70   9.8e-67  223.6   0.0     1   184    20   200    20   200 0.98 rRNA small subunit methyltransferase G
Methyltransf_31      PF13847.1    152 sp|P0A6U5|RSMG_ECOLI -            207     1e-09   38.1   0.0   2   2   1.1e-12   4.1e-09   36.2   0.0     4    94    66   149    64   195 0.82 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P0A6U5|RSMG_ECOLI -            207   0.00072   20.1   0.0   1   1     3e-07    0.0011   19.5   0.0     2    84    66   147    65   166 0.84 Methyltransferase domain
MTS                  PF05175.9    170 sp|P0A6U5|RSMG_ECOLI -            207    0.0067   15.8   0.0   1   1   2.6e-06    0.0097   15.2   0.0    31   104    65   138    47   140 0.88 Methyltransferase small domain
Methyltransf_5       PF01795.14   310 sp|P60390|RSMH_ECOLI -            313  1.6e-124  415.2   0.0   1   1  7.4e-128  1.8e-124  415.0   0.0     2   309     5   310     4   311 0.97 MraW methylase family
Methyltransf_24      PF13578.1    106 sp|P60390|RSMH_ECOLI -            313   0.00068   20.4   0.0   1   2   5.2e-05      0.13   13.1   0.0     4    87    33   111    31   124 0.72 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P60390|RSMH_ECOLI -            313    0.0014   18.1   0.0   1   2   4.7e-05      0.12   12.0   0.0    15    47    35    67    26   102 0.83 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P60390|RSMH_ECOLI -            313    0.0035   17.3   0.1   1   1   5.6e-06     0.014   15.4   0.1     5   114    28   239    24   242 0.51 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P60390|RSMH_ECOLI -            313    0.0087   16.6   0.1   1   1   6.5e-05      0.16   12.5   0.1    13    43    35   113    24   241 0.56 Methyltransferase domain
TP_methylase         PF00590.15   210 sp|P67087|RSMI_ECOLI -            286   1.1e-32  113.4   0.5   1   1   1.2e-36   1.8e-32  112.7   0.3     1   209    13   213    13   214 0.85 Tetrapyrrole (Corrin/Porphyrin) Methylases
SAM_MT               PF04445.8    235 sp|P68567|RSMJ_ECOLI -            250  1.1e-114  381.5   0.0   1   1  8.1e-119  1.2e-114  381.3   0.0     3   234    16   247    14   248 0.99 Putative SAM-dependent methyltransferase
MR_MLE_N             PF02746.11   117 sp|P38104|RSPA_ECOLI -            404   1.4e-35  121.7   0.0   1   1   8.2e-39     3e-35  120.7   0.0    24   117    13   110     6   110 0.96 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
MR_MLE_C             PF13378.1    111 sp|P38104|RSPA_ECOLI -            404   2.9e-27   94.8   0.1   1   1   1.9e-30   7.1e-27   93.5   0.0     1   111   263   375   263   375 0.88 Enolase C-terminal domain-like
MR_MLE               PF01188.16    67 sp|P38104|RSPA_ECOLI -            404   8.4e-11   42.2   0.0   1   1   5.1e-14   1.9e-10   41.1   0.0     2    67   196   263   195   263 0.93 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
Enolase_N            PF03952.11   132 sp|P38104|RSPA_ECOLI -            404     0.064   13.1   0.0   2   2   7.5e-05      0.28   11.1   0.0    72   132    50   109    36   109 0.72 Enolase, N-terminal domain
ADH_N                PF08240.7    109 sp|P38105|RSPB_ECOLI -            339   2.8e-37  126.7   1.7   1   1   3.2e-40   5.8e-37  125.7   1.7     2   109    25   131    24   131 0.98 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N           PF00107.21   130 sp|P38105|RSPB_ECOLI -            339   1.7e-18   66.3   0.0   1   1   1.8e-21   3.4e-18   65.4   0.0     1   129   171   297   171   298 0.97 Zinc-binding dehydrogenase
ADH_zinc_N_2         PF13602.1    127 sp|P38105|RSPB_ECOLI -            339    0.0035   18.2   0.0   2   2   9.9e-06     0.018   15.9   0.0     2   120   206   327   205   335 0.75 Zinc-binding dehydrogenase
TrkA_N               PF02254.13   116 sp|P38105|RSPB_ECOLI -            339    0.0054   16.7   0.1   1   1   6.9e-06     0.013   15.5   0.1     1    46   164   211   164   219 0.89 TrkA-N domain
Saccharop_dh         PF03435.13   386 sp|P38105|RSPB_ECOLI -            339      0.02   13.8   0.0   1   1   1.6e-05      0.03   13.2   0.0     1    42   164   205   164   219 0.92 Saccharopine dehydrogenase
Shikimate_DH         PF01488.15   135 sp|P38105|RSPB_ECOLI -            339     0.022   14.8   0.0   1   1     2e-05     0.037   14.1   0.0    10    51   159   201   151   248 0.92 Shikimate / quinate 5-dehydrogenase
2-Hacid_dh_C         PF02826.14   178 sp|P38105|RSPB_ECOLI -            339     0.022   13.9   0.0   1   1   1.9e-05     0.034   13.2   0.0    29    80   154   207   137   215 0.83 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
NADH_4Fe-4S          PF10589.4     46 sp|P38105|RSPB_ECOLI -            339     0.042   12.9   1.2   1   1   4.9e-05     0.091   11.9   1.2    15    28    88   101    87   115 0.85 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
Patatin              PF01734.17   204 sp|P0AFR0|RSSA_ECOLI -            301   1.9e-24   86.7   0.4   1   2   2.5e-28   3.7e-24   85.8   0.1     1   201     8   165     8   167 0.95 Patatin-like phospholipase
Response_reg         PF00072.19   112 sp|P0AEV1|RSSB_ECOLI -            337   4.1e-28   97.6   0.5   1   2   1.3e-31   9.7e-28   96.4   0.1     1   111    10   120    10   121 0.97 Response regulator receiver domain
SpoIIE               PF07228.7    193 sp|P0AEV1|RSSB_ECOLI -            337     0.011   15.4   0.0   1   1     3e-06     0.022   14.4   0.0     2   112   195   307   194   318 0.89 Stage II sporulation protein E (SpoIIE)
PseudoU_synth_2      PF00849.17   164 sp|P0AA43|RSUA_ECOLI -            231   5.8e-18   65.2   0.0   1   1   1.5e-21   1.1e-17   64.3   0.0     2   164    62   192    61   192 0.90 RNA pseudouridylate synthase
S4                   PF01479.20    48 sp|P0AA43|RSUA_ECOLI -            231   7.1e-09   34.9   0.1   1   1   1.8e-12   1.3e-08   34.0   0.1     1    47     1    46     1    47 0.91 S4 domain
Rnf-Nqr              PF02508.9    190 sp|P0A766|RSXA_ECOLI -            193   2.9e-71  239.0  21.0   1   1   2.1e-75   3.2e-71  238.8  21.0     1   189     1   191     1   192 0.99 Rnf-Nqr subunit, membrane protein
Fer4_21              PF14697.1     59 sp|P77223|RSXB_ECOLI -            192   8.4e-15   54.3  15.4   1   1     9e-18   8.4e-15   54.3  15.4     1    58   110   163   110   164 0.95 4Fe-4S dicluster domain
FeS                  PF04060.8     35 sp|P77223|RSXB_ECOLI -            192   1.1e-14   53.6   5.2   1   1   3.3e-17   3.1e-14   52.2   5.2     1    35    43    77    43    77 0.97 Putative Fe-S cluster
Fer4                 PF00037.22    24 sp|P77223|RSXB_ECOLI -            192   9.2e-13   47.2  25.0   2   3   1.8e-10   1.7e-07   30.5   6.9     2    23   111   132   110   133 0.95 4Fe-4S binding domain
Fer4                 PF00037.22    24 sp|P77223|RSXB_ECOLI -            192   9.2e-13   47.2  25.0   3   3   4.4e-09   4.1e-06   26.1   3.5     2    24   141   163   140   163 0.91 4Fe-4S binding domain
Fer4_9               PF13187.1     55 sp|P77223|RSXB_ECOLI -            192   4.9e-10   39.5  32.8   1   2   2.6e-07   0.00025   21.2   9.7     4    55    48   132    47   132 0.90 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|P77223|RSXB_ECOLI -            192   4.9e-10   39.5  32.8   2   2   2.4e-10   2.2e-07   31.0  15.1     1    55   116   162   116   162 0.95 4Fe-4S dicluster domain
Fer4_16              PF13484.1     67 sp|P77223|RSXB_ECOLI -            192   2.4e-08   34.5   9.6   1   2   5.1e-07   0.00047   20.8   1.8     1    21   116   136   116   144 0.86 4Fe-4S double cluster binding domain
Fer4_16              PF13484.1     67 sp|P77223|RSXB_ECOLI -            192   2.4e-08   34.5   9.6   2   2   2.2e-08   2.1e-05   25.1   1.2     2    34   147   179   146   191 0.87 4Fe-4S double cluster binding domain
Fer4_7               PF12838.2     52 sp|P77223|RSXB_ECOLI -            192   2.5e-08   34.1  20.8   1   2   2.8e-05     0.026   14.9  12.8     5    52    49   131    47   131 0.52 4Fe-4S dicluster domain
Fer4_7               PF12838.2     52 sp|P77223|RSXB_ECOLI -            192   2.5e-08   34.1  20.8   2   2   7.4e-08   6.9e-05   23.1   1.0     2    26   147   171   146   184 0.84 4Fe-4S dicluster domain
Fer4_6               PF12837.2     24 sp|P77223|RSXB_ECOLI -            192   3.2e-08   33.0  28.2   1   2   8.8e-10   8.1e-07   28.6   6.5     1    24   109   132   109   132 0.96 4Fe-4S binding domain
Fer4_6               PF12837.2     24 sp|P77223|RSXB_ECOLI -            192   3.2e-08   33.0  28.2   2   2   8.8e-06    0.0082   15.9   5.7     6    24   144   162   141   162 0.89 4Fe-4S binding domain
Fer4_10              PF13237.1     52 sp|P77223|RSXB_ECOLI -            192   3.9e-08   32.9  26.1   2   3   2.1e-10     2e-07   30.7  14.1     3    52   111   158   109   158 0.87 4Fe-4S dicluster domain
Fer4_10              PF13237.1     52 sp|P77223|RSXB_ECOLI -            192   3.9e-08   32.9  26.1   3   3   1.8e-05     0.016   14.9   4.1     5    35   143   172   139   181 0.73 4Fe-4S dicluster domain
Fer4_2               PF12797.2     22 sp|P77223|RSXB_ECOLI -            192   1.8e-07   30.6  20.1   2   3   1.6e-08   1.4e-05   24.6   4.1     3    22   110   129   108   129 0.93 4Fe-4S binding domain
Fer4_2               PF12797.2     22 sp|P77223|RSXB_ECOLI -            192   1.8e-07   30.6  20.1   3   3   5.6e-05     0.052   13.4   2.6     7    22   144   159   138   159 0.86 4Fe-4S binding domain
Fer4_18              PF13746.1     69 sp|P77223|RSXB_ECOLI -            192   6.2e-06   26.5  13.9   1   2   3.2e-07    0.0003   21.1   0.3    48    65   113   130    83   132 0.87 4Fe-4S dicluster domain
Fer4_18              PF13746.1     69 sp|P77223|RSXB_ECOLI -            192   6.2e-06   26.5  13.9   2   2   0.00035      0.32   11.4   4.2    49    65   144   160   134   163 0.83 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|P77223|RSXB_ECOLI -            192   0.00028   20.8  14.1   1   2   0.00075       0.7    9.9  12.2     4    56    48   130    45   131 0.49 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|P77223|RSXB_ECOLI -            192   0.00028   20.8  14.1   2   2     3e-07   0.00028   20.8  14.1     3    56   115   160   113   161 0.74 4Fe-4S dicluster domain
Fer4_4               PF12800.2     17 sp|P77223|RSXB_ECOLI -            192   0.00054   20.0  13.5   1   2   1.8e-05     0.016   15.4   2.7     2    16   115   129   114   133 0.92 4Fe-4S binding domain
Fer4_4               PF12800.2     17 sp|P77223|RSXB_ECOLI -            192   0.00054   20.0  13.5   2   2   5.7e-06    0.0053   16.9   3.2     1    16   144   159   144   160 0.92 4Fe-4S binding domain
Fer4_17              PF13534.1     61 sp|P77223|RSXB_ECOLI -            192    0.0076   16.5  21.9   1   2   0.00083      0.77   10.1  10.3     1    58    48   129    48   131 0.68 4Fe-4S dicluster domain
Fer4_3               PF12798.2     15 sp|P77223|RSXB_ECOLI -            192    0.0086   16.5   5.8   1   2   9.3e-06    0.0086   16.5   5.8     1    15   117   131   117   131 0.98 4Fe-4S binding domain
Fer4_15              PF13459.1     65 sp|P77223|RSXB_ECOLI -            192      0.07   13.7   5.7   1   2   7.5e-05      0.07   13.7   5.7     2    19   111   128   110   138 0.91 4Fe-4S single cluster domain
BPD_transp_2         PF02653.11   267 sp|P77223|RSXB_ECOLI -            192       0.1   11.5   0.6   1   1   0.00014      0.13   11.1   0.6    54    81     4    31     1    37 0.90 Branched-chain amino acid transport system / permease component
Complex1_51K         PF01512.12   151 sp|P77611|RSXC_ECOLI -            740   1.8e-48  164.0   1.6   1   1   3.1e-51   2.6e-48  163.5   0.0     1   151   139   284   139   284 0.98 Respiratory-chain NADH dehydrogenase 51 Kd subunit
RnfC_N               PF13375.1    101 sp|P77611|RSXC_ECOLI -            740   2.1e-34  117.2   0.1   1   1   8.9e-37   7.3e-34  115.5   0.0     1   101    14   115    14   115 0.96 RnfC Barrel sandwich hybrid domain
SLBB                 PF10531.4     59 sp|P77611|RSXC_ECOLI -            740   2.5e-11   43.3   0.1   1   1   8.1e-14   6.7e-11   41.9   0.1     1    58   296   344   296   345 0.95 SLBB domain
Fer4_7               PF12838.2     52 sp|P77611|RSXC_ECOLI -            740   1.8e-09   37.8   8.8   1   1   7.3e-12     6e-09   36.1   8.8     1    52   376   430   376   430 0.81 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|P77611|RSXC_ECOLI -            740   5.5e-09   35.9   5.1   1   1     2e-11   1.7e-08   34.3   5.1     3    57   375   430   373   460 0.79 4Fe-4S dicluster domain
Fer4                 PF00037.22    24 sp|P77611|RSXC_ECOLI -            740   6.1e-09   35.1  12.5   1   2   7.1e-07   0.00058   19.3   1.4     6    21   375   390   372   392 0.89 4Fe-4S binding domain
Fer4                 PF00037.22    24 sp|P77611|RSXC_ECOLI -            740   6.1e-09   35.1  12.5   2   2   3.5e-07   0.00029   20.3   3.8     7    22   415   430   410   431 0.88 4Fe-4S binding domain
Fer4_10              PF13237.1     52 sp|P77611|RSXC_ECOLI -            740   7.9e-08   31.9  10.5   1   1   2.6e-10   2.1e-07   30.6  10.5     6    52   374   427   370   427 0.89 4Fe-4S dicluster domain
Fer4_6               PF12837.2     24 sp|P77611|RSXC_ECOLI -            740   1.9e-07   30.6  14.4   1   2   1.2e-06   0.00099   18.8   3.3     6    23   374   391   373   392 0.90 4Fe-4S binding domain
Fer4_6               PF12837.2     24 sp|P77611|RSXC_ECOLI -            740   1.9e-07   30.6  14.4   2   2   5.5e-06    0.0046   16.7   3.4     4    22   411   429   409   431 0.87 4Fe-4S binding domain
Fer4_9               PF13187.1     55 sp|P77611|RSXC_ECOLI -            740   4.1e-07   30.1   8.6   1   1   1.8e-09   1.5e-06   28.3   8.5     2    53   377   429   376   430 0.71 4Fe-4S dicluster domain
Fer4_4               PF12800.2     17 sp|P77611|RSXC_ECOLI -            740   5.8e-07   29.3  11.4   1   2   7.9e-06    0.0065   16.7   2.9     2    16   375   389   374   395 0.90 4Fe-4S binding domain
Fer4_4               PF12800.2     17 sp|P77611|RSXC_ECOLI -            740   5.8e-07   29.3  11.4   2   2   7.4e-06    0.0061   16.7   1.4     3    16   415   428   413   436 0.91 4Fe-4S binding domain
Fer4_18              PF13746.1     69 sp|P77611|RSXC_ECOLI -            740   7.3e-07   29.5   8.4   1   2   1.7e-05     0.014   15.7   1.4    41    65   366   390   358   392 0.86 4Fe-4S dicluster domain
Fer4_18              PF13746.1     69 sp|P77611|RSXC_ECOLI -            740   7.3e-07   29.5   8.4   2   2   1.5e-05     0.012   15.9   0.9    48    67   412   431   399   433 0.79 4Fe-4S dicluster domain
Fer4_17              PF13534.1     61 sp|P77611|RSXC_ECOLI -            740   1.1e-06   28.8  11.0   1   2   0.00082      0.67   10.3   3.3    43    60   374   391   355   392 0.79 4Fe-4S dicluster domain
Fer4_17              PF13534.1     61 sp|P77611|RSXC_ECOLI -            740   1.1e-06   28.8  11.0   2   2   9.9e-09   8.1e-06   26.0  10.3     2    61   377   431   376   431 0.81 4Fe-4S dicluster domain
Fer4_2               PF12797.2     22 sp|P77611|RSXC_ECOLI -            740   3.7e-06   26.5  14.4   1   2   1.1e-05    0.0087   15.9   4.5     8    22   375   389   370   389 0.87 4Fe-4S binding domain
Fer4_2               PF12797.2     22 sp|P77611|RSXC_ECOLI -            740   3.7e-06   26.5  14.4   2   2   1.3e-05     0.011   15.6   2.3     9    21   415   427   405   428 0.85 4Fe-4S binding domain
Fer4_21              PF14697.1     59 sp|P77611|RSXC_ECOLI -            740     7e-05   22.5   8.0   1   1   2.3e-07   0.00019   21.2   8.0     5    52   374   427   372   432 0.70 4Fe-4S dicluster domain
Fer4_16              PF13484.1     67 sp|P77611|RSXC_ECOLI -            740   8.4e-05   23.2  13.1   1   2   9.5e-07   0.00079   20.1  11.4     2    67   377   429   376   429 0.89 4Fe-4S double cluster binding domain
Fer4_16              PF13484.1     67 sp|P77611|RSXC_ECOLI -            740   8.4e-05   23.2  13.1   2   2   0.00055      0.45   11.2   4.1     2    30   416   449   415   480 0.60 4Fe-4S double cluster binding domain
Fer4_3               PF12798.2     15 sp|P77611|RSXC_ECOLI -            740   0.00076   19.8  17.6   1   2   0.00058      0.48   11.1   4.8     1    13   377   389   377   390 0.94 4Fe-4S binding domain
Fer4_3               PF12798.2     15 sp|P77611|RSXC_ECOLI -            740   0.00076   19.8  17.6   2   2   6.4e-05     0.053   14.1   4.9     1    14   416   429   416   430 0.94 4Fe-4S binding domain
Fer4_13              PF13370.1     58 sp|P77611|RSXC_ECOLI -            740    0.0063   16.8  13.7   2   2   7.3e-05      0.06   13.7   1.2     5    19   415   429   412   465 0.66 4Fe-4S single cluster domain
NQRA_SLBB            PF11973.3     51 sp|P77611|RSXC_ECOLI -            740     0.083   13.2   0.0   1   1    0.0002      0.17   12.2   0.0     1    46   296   343   296   346 0.92 NQRA C-terminal domain
NQR2_RnfD_RnfE       PF03116.10   314 sp|P76182|RSXD_ECOLI -            352  1.3e-121  405.6  16.1   1   1  9.8e-126  1.5e-121  405.4  16.1     3   314     4   350     2   350 0.93 NQR2, RnfD, RnfE family
Rnf-Nqr              PF02508.9    190 sp|P77179|RSXE_ECOLI -            231   8.6e-59  198.3   9.5   1   1   6.7e-63   9.9e-59  198.1   9.5     1   189     1   200     1   201 0.98 Rnf-Nqr subunit, membrane protein
FMN_bind             PF04205.9     81 sp|P77285|RSXG_ECOLI -            206   2.3e-18   66.1   0.1   1   1   1.3e-21   4.8e-18   65.1   0.0     1    77    99   187    99   191 0.98 FMN-binding domain
DNA_processg_A       PF02481.10   212 sp|P77285|RSXG_ECOLI -            206     0.076   11.9   0.1   1   1   3.1e-05      0.12   11.3   0.1    93   203     4   107     1   111 0.89 DNA recombination-mediator protein A
Calici_MSP           PF05752.6    167 sp|P77285|RSXG_ECOLI -            206     0.081   12.5   0.0   1   1   3.2e-05      0.12   11.9   0.0    35   137    24   120    19   135 0.81 Calicivirus minor structural protein
Salt_tol_Pase        PF09506.5    381 sp|P77285|RSXG_ECOLI -            206      0.12   10.8   0.0   1   1   4.9e-05      0.18   10.3   0.0   154   217    26    85    16    91 0.79 Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase)
RTC                  PF01137.16   228 sp|P46849|RTCA_ECOLI -            338   7.4e-87  289.9   0.1   1   1   1.2e-90   8.7e-87  289.6   0.1     1   226     7   326     7   328 0.99 RNA 3'-terminal phosphate cyclase
RTC_insert           PF05189.8    103 sp|P46849|RTCA_ECOLI -            338   5.4e-14   52.0   0.3   1   1   1.2e-17   9.2e-14   51.3   0.3     2   102   184   276   183   277 0.96 RNA 3'-terminal phosphate cyclase (RTC), insert domain
RtcB                 PF01139.12   420 sp|P46850|RTCB_ECOLI -            408  4.9e-134  447.4   0.2   1   1  3.7e-138  5.5e-134  447.3   0.2     2   420    10   408     9   408 0.93 tRNA-splicing ligase RtcB
RusA                 PF05866.6    118 sp|P0AG74|RUSA_ECOLI -            120     1e-26   93.6   0.0   1   1   7.8e-31   1.2e-26   93.4   0.0     1   118     8   117     8   117 0.93 Endodeoxyribonuclease RusA
Bac_luciferase       PF00296.15   307 sp|P75898|RUTA_ECOLI -            382   3.3e-69  233.3   0.5   1   1   5.5e-73     4e-69  233.0   0.5     1   302    20   339    20   344 0.93 Luciferase-like monooxygenase
Copine               PF07002.11   146 sp|P75898|RUTA_ECOLI -            382     0.087   12.5   0.0   2   3   5.7e-05      0.42   10.3   0.0    83   118   231   266   226   288 0.92 Copine
Isochorismatase      PF00857.15   174 sp|P75897|RUTB_ECOLI -            230   9.5e-42  142.8   0.0   1   1   8.8e-46   1.3e-41  142.4   0.0     1   173    18   215    18   216 0.96 Isochorismatase family
Ribonuc_L-PSP        PF01042.16   121 sp|P0AFQ5|RUTC_ECOLI -            128   7.9e-33  112.7   0.0   1   1   1.3e-36   9.7e-33  112.5   0.0     4   120    13   125    10   126 0.97 Endoribonuclease L-PSP
SLBB                 PF10531.4     59 sp|P0AFQ5|RUTC_ECOLI -            128      0.11   12.4   0.3   2   2   4.5e-05      0.33   10.8   0.0    21    47    58    84    57   101 0.91 SLBB domain
Abhydrolase_6        PF12697.2    228 sp|P75895|RUTD_ECOLI -            266   1.3e-35  123.3   4.3   1   1     1e-38   1.5e-35  123.1   4.3     1   227    16   249    16   250 0.77 Alpha/beta hydrolase family
Abhydrolase_1        PF00561.15   230 sp|P75895|RUTD_ECOLI -            266     6e-17   61.9   0.3   1   1   3.9e-18   5.8e-15   55.4   0.3     1   228    40   251    40   253 0.79 alpha/beta hydrolase fold
Abhydrolase_5        PF12695.2    145 sp|P75895|RUTD_ECOLI -            266     7e-17   61.5   1.6   1   1   2.2e-19   3.2e-16   59.3   1.6     1   144    15   237    15   238 0.75 Alpha/beta hydrolase family
Hydrolase_4          PF12146.3     79 sp|P75895|RUTD_ECOLI -            266   0.00099   18.9   0.0   1   2   2.3e-06    0.0034   17.2   0.0    17    76    14    72     4    75 0.74 Putative lysophospholipase
Thioesterase         PF00975.15   229 sp|P75895|RUTD_ECOLI -            266    0.0014   18.9   0.5   1   1   1.7e-06    0.0025   18.0   0.5     4    85    17    99    14   105 0.72 Thioesterase domain
Ndr                  PF03096.9    283 sp|P75895|RUTD_ECOLI -            266    0.0055   15.2   0.0   1   1   5.2e-06    0.0077   14.7   0.0    50   225    34   204    28   228 0.80 Ndr family
DLH                  PF01738.13   218 sp|P75895|RUTD_ECOLI -            266     0.053   12.7   0.1   2   2   0.00058      0.86    8.8   0.0   140   199   193   248   161   251 0.82 Dienelactone hydrolase family
Esterase             PF00756.15   251 sp|P75895|RUTD_ECOLI -            266     0.069   12.5   0.0   1   1   0.00015      0.23   10.8   0.0    96   175    60   171     3   182 0.75 Putative esterase
Abhydrolase_2        PF02230.11   216 sp|P75895|RUTD_ECOLI -            266     0.076   12.4   0.2   2   3   0.00065      0.96    8.8   0.0    87   147    64   122    36   133 0.81 Phospholipase/Carboxylesterase
BAAT_C               PF08840.6    213 sp|P75895|RUTD_ECOLI -            266     0.091   12.4   0.0   1   1   0.00047      0.69    9.5   0.0    25   136    83   219    74   241 0.65 BAAT / Acyl-CoA thioester hydrolase C terminal
Nitroreductase       PF00881.19   165 sp|P75894|RUTE_ECOLI -            196   1.1e-16   61.1   0.0   1   1   8.7e-21   1.3e-16   60.8   0.0     5   165    18   174    14   174 0.90 Nitroreductase family
Flavin_Reduct        PF01613.13   154 sp|P75893|RUTF_ECOLI -            164   3.2e-31  108.2   0.2   1   1   4.8e-35   3.5e-31  108.1   0.2     1   153    13   159    13   160 0.94 Flavin reductase like domain
Arginase             PF00491.16   278 sp|P75893|RUTF_ECOLI -            164      0.13   11.4   0.0   1   1     2e-05      0.15   11.3   0.0    88   114   128   153    64   158 0.90 Arginase family
Xan_ur_permease      PF00860.15   389 sp|P75892|RUTG_ECOLI -            442  2.7e-104  348.7  54.5   1   2  1.8e-108  2.7e-104  348.7  54.5     2   386    31   401    30   404 0.97 Permease family
RuvA_N               PF01330.16    61 sp|P0A809|RUVA_ECOLI -            203   1.5e-24   85.4   0.4   1   1   2.3e-27   3.8e-24   84.2   0.1     1    61     1    62     1    62 1.00 RuvA N terminal domain
RuvA_C               PF07499.8     47 sp|P0A809|RUVA_ECOLI -            203   1.5e-15   57.0   2.0   1   1   9.1e-19   1.5e-15   57.0   2.0     1    45   158   201   158   203 0.95 RuvA, C-terminal domain
HHH_5                PF14520.1     60 sp|P0A809|RUVA_ECOLI -            203   2.3e-10   40.4   0.9   1   1   3.8e-13   6.2e-10   39.0   0.2     3    59    71   129    69   130 0.87 Helix-hairpin-helix domain
HHH                  PF00633.18    30 sp|P0A809|RUVA_ECOLI -            203   1.7e-07   30.5   0.7   1   2   0.00028      0.46   10.3   0.0    10    29    72    91    65    92 0.86 Helix-hairpin-helix motif
HHH                  PF00633.18    30 sp|P0A809|RUVA_ECOLI -            203   1.7e-07   30.5   0.7   2   2   8.4e-07    0.0014   18.2   0.3    13    27   110   124   109   126 0.91 Helix-hairpin-helix motif
Transposase_20       PF02371.11    87 sp|P0A809|RUVA_ECOLI -            203    0.0012   18.9   0.0   2   2   9.3e-05      0.15   12.1   0.0     4    28   110   132   107   136 0.86 Transposase IS116/IS110/IS902 family
IMS_HHH              PF11798.3     32 sp|P0A809|RUVA_ECOLI -            203     0.002   18.0   0.1   2   2   1.4e-05     0.024   14.6   0.0    14    28   111   125   109   128 0.86 IMS family HHH motif
HHH_8                PF14716.1     68 sp|P0A809|RUVA_ECOLI -            203     0.017   15.3   0.5   2   2   0.00021      0.35   11.0   0.0    47    62   106   123    96   128 0.79 Helix-hairpin-helix domain
RuvB_N               PF05496.7    234 sp|P0A812|RUVB_ECOLI -            336    1e-115  384.7   0.1   1   1  2.5e-118  1.3e-115  384.3   0.1     3   233     8   238     6   239 0.98 Holliday junction DNA helicase ruvB N-terminus
RuvB_C               PF05491.8     76 sp|P0A812|RUVB_ECOLI -            336   3.2e-33  113.1   0.0   1   1   1.3e-35   6.6e-33  112.1   0.0     1    75   256   330   256   331 0.98 Holliday junction DNA helicase ruvB C-terminus
AAA                  PF00004.24   132 sp|P0A812|RUVB_ECOLI -            336   8.6e-20   71.2   0.0   1   1   3.6e-22   1.8e-19   70.2   0.0     1   130    58   181    58   183 0.94 ATPase family associated with various cellular activities (AAA)
AAA_5                PF07728.9    139 sp|P0A812|RUVB_ECOLI -            336     4e-08   33.0   0.0   1   2   0.00018     0.091   12.4   0.1     1    29    57    85    57    90 0.85 AAA domain (dynein-related subfamily)
AAA_5                PF07728.9    139 sp|P0A812|RUVB_ECOLI -            336     4e-08   33.0   0.0   2   2   2.6e-06    0.0013   18.4   0.0    62   139   103   175    89   175 0.86 AAA domain (dynein-related subfamily)
AAA_22               PF13401.1    131 sp|P0A812|RUVB_ECOLI -            336   1.5e-05   25.0   0.1   1   2   2.2e-05     0.011   15.8   0.0     6    27    57    78    53    86 0.90 AAA domain
AAA_17               PF13207.1    121 sp|P0A812|RUVB_ECOLI -            336    0.0001   23.1   0.0   1   1   4.9e-07   0.00025   21.8   0.0     3    27    59    83    58   235 0.73 AAA domain
Mg_chelatase         PF01078.16   207 sp|P0A812|RUVB_ECOLI -            336   0.00011   21.4   0.1   1   2   7.7e-05     0.039   13.0   0.0     6    42    32    75    28    84 0.65 Magnesium chelatase, subunit ChlI
AAA_3                PF07726.6    131 sp|P0A812|RUVB_ECOLI -            336   0.00024   20.7   0.0   1   2   0.00029      0.15   11.7   0.0     1    28    57    84    57    88 0.92 ATPase family associated with various cellular activities (AAA)
TIP49                PF06068.8    398 sp|P0A812|RUVB_ECOLI -            336   0.00026   19.8   0.1   1   2     8e-06    0.0041   15.8   0.0    24    77    29    82    14    88 0.84 TIP49 C-terminus
AAA_14               PF13173.1    128 sp|P0A812|RUVB_ECOLI -            336   0.00058   19.7   0.0   1   1   2.2e-06    0.0011   18.8   0.0     5    93    58   138    56   152 0.69 AAA domain
Rad17                PF03215.10   519 sp|P0A812|RUVB_ECOLI -            336    0.0018   17.0   0.0   1   1   4.8e-06    0.0024   16.6   0.0    33    83    43    93    26   104 0.86 Rad17 cell cycle checkpoint protein
AAA_18               PF13238.1    129 sp|P0A812|RUVB_ECOLI -            336    0.0034   17.6   0.0   1   1   1.6e-05    0.0084   16.4   0.0     2    27    59    84    58   126 0.90 AAA domain
AAA_19               PF13245.1     76 sp|P0A812|RUVB_ECOLI -            336    0.0043   16.7   0.3   1   1   2.6e-05     0.013   15.1   0.0    12    33    55    77    42   118 0.81 Part of AAA domain
Bac_DnaA             PF00308.13   219 sp|P0A812|RUVB_ECOLI -            336    0.0076   15.9   0.0   1   2    0.0002       0.1   12.1   0.0    16    59    37    80    27    87 0.80 Bacterial dnaA  protein
AAA_24               PF13479.1    213 sp|P0A812|RUVB_ECOLI -            336     0.008   15.7   0.1   1   1   4.8e-05     0.025   14.1   0.1     6    21    58    73    57   122 0.88 AAA domain
AAA_10               PF12846.2    304 sp|P0A812|RUVB_ECOLI -            336     0.009   15.4   0.1   1   2   0.00015     0.076   12.4   0.0     3    23    57    77    56    86 0.88 AAA-like domain
NTPase_1             PF03266.10   168 sp|P0A812|RUVB_ECOLI -            336     0.024   14.3   0.2   1   2   0.00042      0.22   11.2   0.0     1    23    57    79    57    93 0.85 NTPase
RNA_helicase         PF00910.17   107 sp|P0A812|RUVB_ECOLI -            336     0.025   14.7   0.0   1   1   9.2e-05     0.047   13.8   0.0     2    57    59   114    58   131 0.69 RNA helicase
AAA_16               PF13191.1    185 sp|P0A812|RUVB_ECOLI -            336     0.042   13.8   0.1   1   1   0.00073      0.37   10.7   0.0    24    44    55    75    40    93 0.83 AAA ATPase domain
Sigma54_activ_2      PF14532.1    138 sp|P0A812|RUVB_ECOLI -            336     0.043   13.8   0.0   1   1    0.0002       0.1   12.6   0.0    22    93    56   130    38   144 0.77 Sigma-54 interaction domain
NB-ARC               PF00931.17   287 sp|P0A812|RUVB_ECOLI -            336     0.052   12.3   0.0   1   1   0.00016      0.08   11.7   0.0    17    43    53    79    40    84 0.83 NB-ARC domain
AAA_33               PF13671.1    143 sp|P0A812|RUVB_ECOLI -            336     0.056   13.3   0.0   1   1   0.00028      0.14   12.0   0.0     3    24    59    80    58   115 0.86 AAA domain
T2SE                 PF00437.15   272 sp|P0A812|RUVB_ECOLI -            336     0.063   12.1   0.0   1   1   0.00022      0.11   11.3   0.0   104   152    28    79    17    85 0.84 Type II/IV secretion system protein
IstB_IS21            PF01695.12   178 sp|P0A812|RUVB_ECOLI -            336     0.078   12.3   0.1   1   1   0.00073      0.37   10.1   0.0    49    67    57    75    49    88 0.86 IstB-like ATP binding protein
AAA_28               PF13521.1    163 sp|P0A812|RUVB_ECOLI -            336      0.08   12.9   0.0   1   1   0.00032      0.16   11.9   0.0     3    24    59    81    57    98 0.85 AAA domain
ABC_tran             PF00005.22   137 sp|P0A812|RUVB_ECOLI -            336      0.16   12.3   0.0   1   1   0.00052      0.26   11.5   0.0    14    35    58    79    47   115 0.86 ABC transporter
RuvC                 PF02075.12   149 sp|P0A814|RUVC_ECOLI -            173   1.3e-66  223.0   0.5   1   1   3.1e-70   1.5e-66  222.7   0.5     1   149     4   150     4   150 1.00 Crossover junction endodeoxyribonuclease RuvC
DUF3882              PF07066.6    159 sp|P0A814|RUVC_ECOLI -            173    0.0008   19.2   0.0   1   1   4.5e-07    0.0022   17.8   0.0    18    97    13    93     1   151 0.80 Lactococcus phage M3 protein
NeuB                 PF03102.9    241 sp|P0A814|RUVC_ECOLI -            173    0.0079   15.3   0.1   1   1     2e-06    0.0096   15.0   0.1    95   161    89   165    66   169 0.82 NeuB family
UPF0081              PF03652.10   135 sp|P0A8I1|RUVX_ECOLI -            138   3.5e-44  150.2   0.0   1   1   2.6e-48   3.8e-44  150.0   0.0     2   135     4   136     3   136 0.98 Uncharacterised protein family (UPF0081)
Rz1                  PF06085.6     40 sp|P58041|RZOD_ECOLI -             60   8.6e-24   82.6   8.5   1   1   7.4e-28   1.1e-23   82.3   8.5     1    40    20    60    20    60 0.98 Lipoprotein Rz1 precursor
Rz1                  PF06085.6     40 sp|P58042|RZOR_ECOLI -             61   5.9e-23   80.0  11.4   1   1   5.1e-27   7.5e-23   79.6  11.4     1    39    20    59    20    60 0.97 Lipoprotein Rz1 precursor
Aldedh               PF00171.17   462 sp|P76149|SAD_ECOLI  -            462  8.3e-142  472.7   1.6   1   1  6.9e-146    1e-141  472.4   1.6    10   462    10   457     4   457 0.97 Aldehyde dehydrogenase family
SecE                 PF00584.15    57 sp|P76136|SAFA_ECOLI -             65    0.0022   17.5   0.5   1   1   8.3e-07    0.0031   17.0   0.5    21    49    16    44    15    51 0.91 SecE/Sec61-gamma subunits of protein translocation complex
7tm_2                PF00002.19   243 sp|P76136|SAFA_ECOLI -             65    0.0033   16.5   0.1   1   1   9.1e-07    0.0034   16.5   0.1   185   240     8    65     1    65 0.78 7 transmembrane receptor (Secretin family)
PsbT                 PF01405.12    29 sp|P76136|SAFA_ECOLI -             65     0.056   13.0   3.1   1   1   2.1e-05     0.078   12.5   3.1     1    21    20    40    20    41 0.96 Photosystem II reaction centre T protein
Sigma_reg_N          PF13800.1     96 sp|P76136|SAFA_ECOLI -             65     0.074   13.0   1.0   1   1   2.1e-05     0.079   13.0   1.0     2    42     8    48     7    63 0.81 Sigma factor regulator N-terminal
SBP_bac_5            PF00496.17   374 sp|Q47622|SAPA_ECOLI -            547   1.5e-82  277.3   0.2   1   1   2.5e-86   1.8e-82  277.1   0.2     3   371    80   456    78   459 0.94 Bacterial extracellular solute-binding proteins, family 5 Middle
Phage_tail_X         PF05489.7     60 sp|Q47622|SAPA_ECOLI -            547      0.14   11.6   0.0   1   2   6.9e-05      0.51    9.8   0.0    10    47    57    94    51    98 0.91 Phage Tail Protein X
BPD_transp_1         PF00528.17   185 sp|P0AGH3|SAPB_ECOLI -            321   1.6e-44  151.6  11.2   2   2   2.1e-48   1.6e-44  151.6  11.2     1   181    92   311    92   315 0.99 Binding-protein-dependent transport system inner membrane component
E1-E2_ATPase         PF00122.15   230 sp|P0AGH3|SAPB_ECOLI -            321     0.093   11.7   1.9   1   1     3e-05      0.22   10.5   1.9   154   207    77   133     6   141 0.77 E1-E2 ATPase
BPD_transp_1         PF00528.17   185 sp|P0AGH5|SAPC_ECOLI -            296   9.7e-19   67.5  13.8   2   2   1.3e-22   9.7e-19   67.5  13.8     1   180   113   292   113   296 0.91 Binding-protein-dependent transport system inner membrane component
OppC_N               PF12911.2     56 sp|P0AGH5|SAPC_ECOLI -            296   1.1e-10   40.6   1.6   1   2   1.8e-12   1.4e-08   34.0   0.0     5    56    16    67    12    67 0.94 N-terminal TM domain of oligopeptide transport permease C
ABC_tran             PF00005.22   137 sp|P0AAH4|SAPD_ECOLI -            330   2.5e-29  102.3   0.0   1   2   1.4e-30   1.2e-27   96.8   0.0     2   137    24   187    23   187 0.96 ABC transporter
oligo_HPY            PF08352.7     64 sp|P0AAH4|SAPD_ECOLI -            330     5e-18   65.2   0.4   1   1   1.1e-20   9.9e-18   64.2   0.4     1    64   238   305   238   305 0.96 Oligopeptide/dipeptide transporter, C-terminal region
AAA_21               PF13304.1    303 sp|P0AAH4|SAPD_ECOLI -            330   9.6e-11   42.1   0.2   1   2    0.0007      0.61    9.9   0.0     4    46    38    63    37    85 0.71 AAA domain
AAA_21               PF13304.1    303 sp|P0AAH4|SAPD_ECOLI -            330   9.6e-11   42.1   0.2   2   2   4.7e-10   4.1e-07   30.2   0.1   234   300   156   220   126   223 0.85 AAA domain
AAA_15               PF13175.1    415 sp|P0AAH4|SAPD_ECOLI -            330     0.002   17.2   0.3   2   2   0.00031      0.27   10.2   0.2   372   411   179   218   166   222 0.87 AAA ATPase domain
SMC_N                PF02463.14   220 sp|P0AAH4|SAPD_ECOLI -            330    0.0023   17.1   0.0   1   1     6e-06    0.0053   16.0   0.0    24   212    33   232    20   240 0.76 RecF/RecN/SMC N terminal domain
AAA                  PF00004.24   132 sp|P0AAH4|SAPD_ECOLI -            330    0.0065   16.6   0.1   1   2   0.00016      0.14   12.3   0.0     3    41    38    89    37   104 0.63 ATPase family associated with various cellular activities (AAA)
AAA_29               PF13555.1     62 sp|P0AAH4|SAPD_ECOLI -            330     0.066   12.7   0.0   1   1   0.00016      0.14   11.7   0.0    16    43    27    53    18    56 0.72 P-loop containing region of AAA domain
AAA_18               PF13238.1    129 sp|P0AAH4|SAPD_ECOLI -            330     0.094   13.0   0.0   1   1    0.0011      0.96    9.7   0.0     3    38    38   103    37   246 0.83 AAA domain
Sigma54_activat      PF00158.21   168 sp|P0AAH4|SAPD_ECOLI -            330     0.095   12.1   0.1   1   2    0.0006      0.53    9.7   0.0    27    44    38    55    15    69 0.80 Sigma-54 interaction domain
AAA_23               PF13476.1    202 sp|P0AAH4|SAPD_ECOLI -            330      0.11   12.7   0.0   1   1   0.00022      0.19   12.0   0.0    21    41    35    55     3    56 0.63 AAA domain
AAA_25               PF13481.1    194 sp|P0AAH4|SAPD_ECOLI -            330      0.12   11.7   0.0   1   1   0.00054      0.47    9.8   0.0    28    55    28    55     5    79 0.87 AAA domain
ABC_tran             PF00005.22   137 sp|P0AAH8|SAPF_ECOLI -            268   8.9e-34  116.7   0.0   1   1   3.3e-36   1.6e-33  115.9   0.0     2   136    31   178    30   179 0.97 ABC transporter
AAA_21               PF13304.1    303 sp|P0AAH8|SAPF_ECOLI -            268   1.1e-12   48.5   1.0   1   2   1.2e-07   5.8e-05   23.1   0.4     3    47    44    86    42    94 0.74 AAA domain
AAA_21               PF13304.1    303 sp|P0AAH8|SAPF_ECOLI -            268   1.1e-12   48.5   1.0   2   2   8.9e-09   4.3e-06   26.9   0.0   167   293    76   205    64   212 0.91 AAA domain
AAA_10               PF12846.2    304 sp|P0AAH8|SAPF_ECOLI -            268   8.3e-07   28.7   0.2   1   2   5.1e-06    0.0024   17.3   0.0     3    67    42   112    40   142 0.62 AAA-like domain
AAA_10               PF12846.2    304 sp|P0AAH8|SAPF_ECOLI -            268   8.3e-07   28.7   0.2   2   2   0.00065      0.31   10.4   0.0   215   267   163   215    83   240 0.74 AAA-like domain
AAA_22               PF13401.1    131 sp|P0AAH8|SAPF_ECOLI -            268   4.6e-06   26.8   0.0   1   1   3.7e-08   1.8e-05   24.9   0.0     4   125    40   210    37   217 0.73 AAA domain
SMC_N                PF02463.14   220 sp|P0AAH8|SAPF_ECOLI -            268   0.00012   21.3   0.2   1   2   0.00016     0.078   12.1   0.0    26    42    42    58    29    71 0.84 RecF/RecN/SMC N terminal domain
DUF258               PF03193.11   161 sp|P0AAH8|SAPF_ECOLI -            268   0.00013   21.1   0.0   1   1   5.3e-07   0.00025   20.2   0.0     9    60    13    65     6    96 0.86 Protein of unknown function, DUF258
AAA_29               PF13555.1     62 sp|P0AAH8|SAPF_ECOLI -            268   0.00041   19.8   0.1   1   1   1.7e-06   0.00079   18.8   0.1    19    39    37    56    26    64 0.85 P-loop containing region of AAA domain
NACHT                PF05729.7    166 sp|P0AAH8|SAPF_ECOLI -            268    0.0027   17.3   0.0   1   1   1.3e-05    0.0064   16.1   0.0     2    22    42    62    41    80 0.89 NACHT domain
AAA_17               PF13207.1    121 sp|P0AAH8|SAPF_ECOLI -            268    0.0029   18.4   0.0   1   1   1.1e-05    0.0053   17.5   0.0     3    32    44    82    42   152 0.69 AAA domain
AAA_25               PF13481.1    194 sp|P0AAH8|SAPF_ECOLI -            268    0.0031   16.9   0.0   1   1     1e-05    0.0048   16.3   0.0    29    60    36    69     7   140 0.79 AAA domain
DUF87                PF01935.12   229 sp|P0AAH8|SAPF_ECOLI -            268    0.0036   17.1   0.0   1   1   1.2e-05    0.0056   16.5   0.0    26    83    43    97    40   135 0.70 Domain of unknown function DUF87
FtsK_SpoIIIE         PF01580.13   205 sp|P0AAH8|SAPF_ECOLI -            268    0.0042   16.5   0.0   1   1   1.7e-05    0.0081   15.6   0.0    12    55    16    57     5    68 0.83 FtsK/SpoIIIE family
AAA_23               PF13476.1    202 sp|P0AAH8|SAPF_ECOLI -            268    0.0042   17.4   0.0   1   1   1.1e-05    0.0055   17.0   0.0    20    40    41    61    21   132 0.87 AAA domain
IstB_IS21            PF01695.12   178 sp|P0AAH8|SAPF_ECOLI -            268    0.0051   16.2   0.1   1   2   0.00013     0.061   12.7   0.0    22    68    15    61     4    64 0.79 IstB-like ATP binding protein
ABC_ATPase           PF09818.4    448 sp|P0AAH8|SAPF_ECOLI -            268    0.0056   15.3   0.9   2   2   0.00049      0.24    9.9   0.1   376   419   189   232   172   256 0.84 Predicted ATPase of the ABC class
AAA_16               PF13191.1    185 sp|P0AAH8|SAPF_ECOLI -            268    0.0078   16.2   0.1   1   1   3.5e-05     0.017   15.1   0.1    22    50    38    66    23   177 0.81 AAA ATPase domain
AAA_15               PF13175.1    415 sp|P0AAH8|SAPF_ECOLI -            268     0.009   15.0   0.0   1   2    0.0016      0.76    8.7   0.0    26    42    44    60    12    90 0.83 AAA ATPase domain
AAA_18               PF13238.1    129 sp|P0AAH8|SAPF_ECOLI -            268     0.013   15.8   0.3   1   1    0.0001     0.048   13.9   0.1     2    31    44    77    43    88 0.86 AAA domain
ATP-synt_ab          PF00006.20   215 sp|P0AAH8|SAPF_ECOLI -            268     0.015   14.7   0.2   1   1   6.2e-05      0.03   13.8   0.0    10    36    35    61    29    72 0.90 ATP synthase alpha/beta family, nucleotide-binding domain
DUF2847              PF11009.3    105 sp|P0AAH8|SAPF_ECOLI -            268     0.023   14.2   0.2   1   1   7.1e-05     0.034   13.7   0.2    51   102   188   241   170   244 0.80 Protein of unknown function (DUF2847)
AAA_33               PF13671.1    143 sp|P0AAH8|SAPF_ECOLI -            268     0.024   14.5   0.0   1   1    0.0001      0.05   13.4   0.0     4    79    45   178    43   210 0.61 AAA domain
AAA                  PF00004.24   132 sp|P0AAH8|SAPF_ECOLI -            268      0.03   14.5   0.0   1   2   0.00086      0.41   10.8   0.0     3    23    45    65    43   110 0.66 ATPase family associated with various cellular activities (AAA)
AAA_13               PF13166.1    712 sp|P0AAH8|SAPF_ECOLI -            268     0.035   12.5   0.0   1   1   9.8e-05     0.047   12.1   0.0    21    39    45    63    34    91 0.86 AAA domain
MobB                 PF03205.9    140 sp|P0AAH8|SAPF_ECOLI -            268     0.038   13.6   0.0   1   1   0.00017     0.079   12.6   0.0     3    23    43    63    41    85 0.88 Molybdopterin guanine dinucleotide synthesis protein B
oligo_HPY            PF08352.7     64 sp|P0AAH8|SAPF_ECOLI -            268     0.039   14.2   0.0   1   1   0.00017     0.082   13.2   0.0     1    23   230   252   230   264 0.93 Oligopeptide/dipeptide transporter, C-terminal region
Mg_chelatase         PF01078.16   207 sp|P0AAH8|SAPF_ECOLI -            268     0.049   12.7   0.0   1   1   0.00016     0.076   12.1   0.0    22    52    40    70    25   100 0.84 Magnesium chelatase, subunit ChlI
Sigma54_activ_2      PF14532.1    138 sp|P0AAH8|SAPF_ECOLI -            268     0.057   13.4   0.0   1   1   0.00033      0.16   12.0   0.0    19    42    38    61    25    76 0.82 Sigma-54 interaction domain
RNA_helicase         PF00910.17   107 sp|P0AAH8|SAPF_ECOLI -            268     0.067   13.3   0.5   1   1   0.00031      0.15   12.2   0.1     3    25    45    67    43   138 0.86 RNA helicase
G-alpha              PF00503.15   389 sp|P0AAH8|SAPF_ECOLI -            268     0.069   11.8   0.0   1   1   0.00016     0.077   11.6   0.0    59    87    41    69    31   219 0.71 G-protein alpha subunit
AAA_5                PF07728.9    139 sp|P0AAH8|SAPF_ECOLI -            268     0.096   12.4   0.1   1   1   0.00051      0.24   11.1   0.1     3    23    44    64    42    74 0.84 AAA domain (dynein-related subfamily)
MMR_HSR1             PF01926.18   116 sp|P0AAH8|SAPF_ECOLI -            268      0.17   11.8   0.0   1   1   0.00092      0.44   10.5   0.0     2    21    43    62    42   151 0.70 50S ribosome-binding GTPase
Grp1_Fun34_YaaH      PF01184.14   211 sp|P0AC98|SATP_ECOLI -            188   2.4e-59  200.1  21.7   1   1   1.7e-63   2.6e-59  200.0  21.7    15   207     4   184     1   188 0.95 GPR1/FUN34/yaaH family
AAA_23               PF13476.1    202 sp|P13458|SBCC_ECOLI -           1048   6.6e-28   98.4  10.5   1   1   8.4e-31   6.6e-28   98.4  10.5     1   200     5   272     5   276 0.81 AAA domain
SbcCD_C              PF13558.1     90 sp|P13458|SBCC_ECOLI -           1048   2.5e-19   69.0   0.6   1   1     1e-21   8.1e-19   67.3   0.6     5    89   924  1002   920  1003 0.88 Putative exonuclease SbcCD, C subunit
AAA_29               PF13555.1     62 sp|P13458|SBCC_ECOLI -           1048   2.7e-07   30.0   0.1   1   1   2.4e-09   1.9e-06   27.3   0.0    18    51    26    58    16    69 0.80 P-loop containing region of AAA domain
AAA_19               PF13245.1     76 sp|P13458|SBCC_ECOLI -           1048   8.7e-05   22.1   0.0   1   1   5.8e-07   0.00045   19.8   0.0     8    37    29    56    25    75 0.77 Part of AAA domain
SMC_N                PF02463.14   220 sp|P13458|SBCC_ECOLI -           1048   0.00044   19.5  25.3   1   1     1e-05    0.0078   15.4   0.0     4    53     5    59     2   104 0.64 RecF/RecN/SMC N terminal domain
ABC_tran             PF00005.22   137 sp|P13458|SBCC_ECOLI -           1048    0.0036   17.6   0.0   1   1   4.6e-06    0.0036   17.6   0.0    13    38    32    57    26   157 0.78 ABC transporter
AAA_15               PF13175.1    415 sp|P13458|SBCC_ECOLI -           1048    0.0037   16.3   0.1   1   1   1.1e-05    0.0087   15.1   0.0     4    56     6    75     3   104 0.82 AAA ATPase domain
AAA_17               PF13207.1    121 sp|P13458|SBCC_ECOLI -           1048    0.0047   17.7   0.0   1   1   3.4e-05     0.026   15.3   0.0     2    23    33    54    32   145 0.75 AAA domain
AAA_25               PF13481.1    194 sp|P13458|SBCC_ECOLI -           1048    0.0047   16.3   1.5   1   1   4.3e-05     0.034   13.5   0.0    33    62    30    59    21    73 0.83 AAA domain
AAA_21               PF13304.1    303 sp|P13458|SBCC_ECOLI -           1048    0.0066   16.4   0.0   1   1   1.5e-05     0.011   15.6   0.0     3    23    34    54    32    87 0.78 AAA domain
AAA_18               PF13238.1    129 sp|P13458|SBCC_ECOLI -           1048     0.013   15.7   0.1   1   1   0.00035      0.27   11.5   0.0     2    23    34    64    34   135 0.70 AAA domain
cobW                 PF02492.14   178 sp|P13458|SBCC_ECOLI -           1048     0.014   14.8   1.7   1   2   0.00016      0.13   11.7   0.0     4    21    34    51    32    78 0.88 CobW/HypB/UreG, nucleotide-binding domain
NTPase_1             PF03266.10   168 sp|P13458|SBCC_ECOLI -           1048     0.019   14.6   0.0   1   1   0.00012     0.097   12.3   0.0     2    24    33    55    32    62 0.87 NTPase
AAA_22               PF13401.1    131 sp|P13458|SBCC_ECOLI -           1048     0.038   14.1   0.0   1   3   4.9e-05     0.038   14.1   0.0     3    30    29    56    24   122 0.85 AAA domain
AAA_10               PF12846.2    304 sp|P13458|SBCC_ECOLI -           1048     0.098   12.0   0.0   1   1   0.00013     0.098   12.0   0.0     1    27    30    56    30    67 0.87 AAA-like domain
MobB                 PF03205.9    140 sp|P13458|SBCC_ECOLI -           1048       0.1   12.2   0.0   1   1    0.0011      0.86    9.3   0.0     3    27    33    57    32    71 0.84 Molybdopterin guanine dinucleotide synthesis protein B
Lipase_GDSL          PF00657.17   234 sp|P13458|SBCC_ECOLI -           1048       1.3    8.7   4.8   1   1    0.0012      0.93    9.2   0.6   100   205   367   489   356   523 0.72 GDSL-like Lipase/Acylhydrolase
SbcD_C               PF12320.3    100 sp|P0AG76|SBCD_ECOLI -            400   3.6e-29  100.7   4.4   1   1   2.3e-32   6.7e-29   99.8   4.4     1    99   274   375   274   376 0.93 Type 5 capsule protein repressor C-terminal domain
Metallophos          PF00149.23   200 sp|P0AG76|SBCD_ECOLI -            400   4.3e-13   49.1   0.1   1   2   4.8e-16   1.4e-12   47.4   0.1     1   199     1   225     1   226 0.86 Calcineurin-like phosphoesterase
Metallophos_2        PF12850.2    156 sp|P0AG76|SBCD_ECOLI -            400   3.4e-11   43.2   0.1   1   1   9.3e-14   2.8e-10   40.2   0.1     1   149     1   255     1   263 0.67 Calcineurin-like phosphoesterase superfamily domain
ATPgrasp_Ter         PF15632.1    330 sp|P0AG76|SBCD_ECOLI -            400     0.024   13.3   0.0   1   1   1.5e-05     0.046   12.4   0.0    50   117    23   102     5   110 0.79 ATP-grasp in the biosynthetic pathway with Ter operon
SbmA_BacA            PF05992.7    315 sp|P0AFY6|SBMA_ECOLI -            406  2.1e-164  546.2  12.2   1   1  6.2e-168    3e-164  545.7  12.2     1   314    80   393    80   394 1.00 SbmA/BacA-like family
ABC_membrane_2       PF06472.10   282 sp|P0AFY6|SBMA_ECOLI -            406   4.5e-13   48.9   8.2   1   1   5.8e-16   2.9e-12   46.3   8.2    20   214    79   284    70   343 0.87 ABC transporter transmembrane region 2
GyrI-like            PF06445.10   155 sp|P33012|SBMC_ECOLI -            157   1.1e-32  113.2   0.4   1   1   2.4e-36   1.2e-32  113.0   0.4     1   155     1   153     1   153 0.99 GyrI-like small molecule binding domain
Cass2                PF14526.1    150 sp|P33012|SBMC_ECOLI -            157   9.2e-10   38.7   0.1   1   1   2.1e-13   1.1e-09   38.5   0.1     1   150     4   152     4   152 0.86 Integron-associated effector binding protein
A_amylase_inhib      PF01356.14    68 sp|P33012|SBMC_ECOLI -            157      0.03   14.0   0.1   1   1   1.1e-05     0.053   13.3   0.1    29    64    48    83    41    87 0.88 Alpha amylase inhibitor
MM_CoA_mutase        PF01642.17   516 sp|P27253|SCPA_ECOLI -            714  4.1e-256  850.0   1.2   1   1  6.5e-260  4.8e-256  849.8   1.2     1   516    27   542    27   542 1.00 Methylmalonyl-CoA mutase
B12-binding          PF02310.14   121 sp|P27253|SCPA_ECOLI -            714   3.4e-15   55.9   0.5   2   2   1.3e-18   9.4e-15   54.5   0.1     2   117   586   699   585   703 0.92 B12 binding domain
ECH                  PF00378.15   245 sp|P52045|SCPB_ECOLI -            261   5.8e-43  146.7   0.0   1   1   8.9e-47   6.6e-43  146.5   0.0     6   245    12   253     7   253 0.93 Enoyl-CoA hydratase/isomerase family
ECH_C                PF13766.1    118 sp|P52045|SCPB_ECOLI -            261      0.14   12.3   0.0   1   1   3.3e-05      0.24   11.5   0.0    28    91   186   251   165   258 0.83 2-enoyl-CoA Hydratase C-terminal region
AcetylCoA_hydro      PF02550.10   198 sp|P52043|SCPC_ECOLI -            492   2.4e-76  255.9   0.0   1   1   1.2e-79   3.4e-76  255.4   0.0     1   198     1   213     1   213 0.99 Acetyl-CoA hydrolase/transferase N-terminal domain
AcetylCoA_hyd_C      PF13336.1    154 sp|P52043|SCPC_ECOLI -            492   5.4e-40  136.5   0.0   1   1   3.2e-43   9.5e-40  135.7   0.0     3   153   317   461   316   462 0.98 Acetyl-CoA hydrolase/transferase C-terminal domain
CitF                 PF04223.7    466 sp|P52043|SCPC_ECOLI -            492   2.4e-05   23.1   0.1   1   1   1.4e-08   4.2e-05   22.4   0.1   291   403   312   431   282   439 0.74 Citrate lyase, alpha subunit (CitF)
DUF162               PF02589.10   189 sp|P52043|SCPC_ECOLI -            492    0.0013   18.2   0.0   1   1   8.6e-07    0.0026   17.3   0.0    20   123    61   159    40   162 0.84 Uncharacterised ACR, YkgG family COG1556
CoA_trans            PF01144.18   217 sp|P52043|SCPC_ECOLI -            492     0.016   14.3   0.0   1   1   1.5e-05     0.045   12.9   0.0     1    41     7    46     7    55 0.91 Coenzyme A transferase
ELK                  PF03789.8     22 sp|P0AAD6|SDAC_ECOLI -            429      0.15   11.9   0.0   1   1   3.5e-05      0.26   11.1   0.0     7    17   400   410   400   410 0.91 ELK domain
AA_permease_2        PF13520.1    426 sp|P0AAD6|SDAC_ECOLI -            429       2.9    6.3  45.3   1   2     3e-06     0.022   13.3  31.4    11   285    30   314    23   325 0.69 Amino acid permease
FAD_binding_2        PF00890.19   417 sp|P0AC41|SDHA_ECOLI -            588    1e-118  396.8   6.1   1   1  5.7e-122  1.2e-118  396.5   6.1     1   417     9   405     9   405 0.98 FAD binding domain
Succ_DH_flav_C       PF02910.15   129 sp|P0AC41|SDHA_ECOLI -            588   3.3e-38  130.4   0.1   1   1   2.6e-41   5.6e-38  129.7   0.1     1   129   460   588   460   588 0.96 Fumarate reductase flavoprotein C-term
GIDA                 PF01134.17   392 sp|P0AC41|SDHA_ECOLI -            588   0.00017   20.5   3.0   1   2   7.5e-07    0.0016   17.3   0.9     1    29     9    37     9    62 0.84 Glucose inhibited division protein A
Pyr_redox_2          PF07992.9    201 sp|P0AC41|SDHA_ECOLI -            588   0.00091   19.1   6.4   1   2   2.8e-06     0.006   16.4   0.1     1    34     9    42     9    77 0.87 Pyridine nucleotide-disulphide oxidoreductase
HI0933_like          PF03486.9    409 sp|P0AC41|SDHA_ECOLI -            588    0.0036   15.8   3.2   1   3   1.9e-06    0.0041   15.6   0.1     2    31     9    38     8    65 0.86 HI0933-like protein
DAO                  PF01266.19   358 sp|P0AC41|SDHA_ECOLI -            588    0.0039   16.1   4.6   1   1   5.4e-06     0.011   14.6   4.6     1   201     9   204     9   265 0.65 FAD dependent oxidoreductase
Thi4                 PF01946.12   230 sp|P0AC41|SDHA_ECOLI -            588    0.0079   15.3   0.4   1   2   0.00011      0.24   10.4   0.0    16    47     6    37     2    54 0.86 Thi4 family
Fer2_3               PF13085.1    110 sp|P07014|SDHB_ECOLI -            238   7.1e-31  106.2   0.0   1   1     9e-34     1e-30  105.7   0.0     2   109     5   111     4   112 0.93 2Fe-2S iron-sulfur cluster binding domain
Fer4_17              PF13534.1     61 sp|P07014|SDHB_ECOLI -            238   2.7e-10   40.4   0.8   1   1   4.4e-13   5.1e-10   39.5   0.8     1    61   148   221   148   221 0.79 4Fe-4S dicluster domain
Fer4_8               PF13183.1     57 sp|P07014|SDHB_ECOLI -            238   1.3e-09   37.8   1.5   1   1   2.5e-12   2.8e-09   36.8   1.5     2    56   146   219   145   220 0.71 4Fe-4S dicluster domain
Fer4_18              PF13746.1     69 sp|P07014|SDHB_ECOLI -            238   5.2e-07   29.9   1.0   2   2   4.5e-09   5.1e-06   26.8   0.2     2    67   155   221   154   223 0.97 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|P07014|SDHB_ECOLI -            238   5.8e-05   23.2   3.9   1   2   5.4e-05     0.062   13.5   0.7    26    51   132   160   110   162 0.72 4Fe-4S dicluster domain
Fer4_9               PF13187.1     55 sp|P07014|SDHB_ECOLI -            238   5.8e-05   23.2   3.9   2   2   0.00065      0.75   10.1   0.0    36    53   202   219   179   230 0.74 4Fe-4S dicluster domain
Fer4_10              PF13237.1     52 sp|P07014|SDHB_ECOLI -            238   0.00019   21.1   5.7   1   1   6.1e-07   0.00069   19.3   5.8     9    52   149   217   144   217 0.73 4Fe-4S dicluster domain
Fer4_7               PF12838.2     52 sp|P07014|SDHB_ECOLI -            238   0.00034   20.9   6.6   2   2   1.7e-06     0.002   18.4   6.9     2    51   149   219   148   220 0.74 4Fe-4S dicluster domain
Fer4                 PF00037.22    24 sp|P07014|SDHB_ECOLI -            238      0.41   10.3  13.7   2   2   0.00041      0.47   10.1   0.5     7    21   205   219   202   219 0.89 4Fe-4S binding domain
PALP                 PF00291.20   306 sp|P00926|SDHD_ECOLI -            442   7.1e-44  150.2   0.0   1   1   6.6e-48   9.9e-44  149.7   0.0    15   288    92   399    73   409 0.85 Pyridoxal-phosphate dependent enzyme
SDH_alpha            PF03313.10   283 sp|P16095|SDHL_ECOLI -            454  8.3e-104  346.5   5.6   1   1  2.2e-107  1.1e-103  346.2   5.6     3   282   184   449   182   450 0.96 Serine dehydratase alpha chain
SDH_beta             PF03315.10   158 sp|P16095|SDHL_ECOLI -            454   8.7e-56  188.3   0.0   1   1   3.2e-59   1.6e-55  187.5   0.0     1   157     3   158     3   159 0.96 Serine dehydratase beta chain
MmgE_PrpD            PF03972.9    445 sp|P16095|SDHL_ECOLI -            454      0.02   13.0   1.8   1   1   5.8e-06     0.028   12.5   1.8   104   231   291   423   284   451 0.75 MmgE/PrpD family
SDH_alpha            PF03313.10   283 sp|P30744|SDHM_ECOLI -            455  1.3e-102  342.6  11.1   1   1  4.5e-106  1.7e-102  342.2  11.1     2   282   183   449   182   450 0.96 Serine dehydratase alpha chain
SDH_beta             PF03315.10   158 sp|P30744|SDHM_ECOLI -            455   4.4e-56  189.2   0.1   1   1     3e-59   1.1e-55  188.0   0.1     1   157     3   158     3   159 0.96 Serine dehydratase beta chain
MmgE_PrpD            PF03972.9    445 sp|P30744|SDHM_ECOLI -            455    0.0086   14.2   3.8   1   1   3.3e-06     0.012   13.7   3.8   104   232   291   424   284   452 0.80 MmgE/PrpD family
SAP                  PF02037.22    35 sp|P30744|SDHM_ECOLI -            455     0.064   12.7   0.1   1   2   6.1e-05      0.23   11.0   0.0     6    27   174   197   173   198 0.92 SAP domain
SecA_DEAD            PF07517.9    266 sp|P10408|SECA_ECOLI -            901  7.8e-122  405.6   0.2   1   1  5.6e-125  1.7e-121  404.6   0.2     2   265     7   401     6   402 1.00 SecA DEAD-like domain
SecA_SW              PF07516.8    214 sp|P10408|SECA_ECOLI -            901   1.6e-76  256.8   5.6   1   1   1.5e-79   4.3e-76  255.4   5.6     1   213   617   830   617   831 0.98 SecA Wing and Scaffold domain
SecA_PP_bind         PF01043.15   114 sp|P10408|SECA_ECOLI -            901   9.2e-41  138.7   0.2   1   1     9e-44   2.7e-40  137.2   0.2     2   114   229   358   228   358 0.96 SecA preprotein cross-linking domain
SEC-C                PF02810.10    21 sp|P10408|SECA_ECOLI -            901   9.9e-12   44.1   7.5   1   1   5.4e-15   1.6e-11   43.4   7.5     1    20   881   900   881   901 0.95 SEC-C motif
DEAD                 PF00270.24   169 sp|P10408|SECA_ECOLI -            901   5.9e-05   22.6   0.0   1   1   6.3e-08   0.00019   20.9   0.0    14   133    95   216    85   249 0.80 DEAD/DEAH box helicase
SecB                 PF02556.9    149 sp|P0AG86|SECB_ECOLI -            155   1.7e-58  196.4   0.1   1   1   1.3e-62   1.9e-58  196.2   0.1     1   148     1   145     1   146 0.97 Preprotein translocase subunit SecB
SecD-TM1             PF13721.1    101 sp|P0AG90|SECD_ECOLI -            615   1.9e-39  134.0   3.6   1   2   4.2e-41     1e-37  128.4   0.1     1   101     2   103     2   103 0.96 SecD export protein N-terminal TM region
SecD_SecF            PF02355.11   189 sp|P0AG90|SECD_ECOLI -            615   8.7e-16   57.6  10.3   1   1   6.6e-19   1.6e-15   56.7  10.3    14   184   434   602   427   606 0.90 Protein export membrane protein
MMPL                 PF03176.10   333 sp|P0AG90|SECD_ECOLI -            615   1.9e-08   33.4  12.2   2   2   7.5e-12   1.9e-08   33.4  12.2   180   299   481   601   458   612 0.81 MMPL family
Sec_GG               PF07549.9     31 sp|P0AG90|SECD_ECOLI -            615   2.8e-08   32.5   0.0   1   1   2.8e-11     7e-08   31.2   0.0     3    29   115   141   113   143 0.89 SecD/SecF GG Motif
SecE                 PF00584.15    57 sp|P0AG96|SECE_ECOLI -            127   2.4e-21   75.0   1.0   3   3     8e-25   2.4e-21   75.0   1.0     2    56    68   122    67   123 0.97 SecE/Sec61-gamma subunits of protein translocation complex
DUF975               PF06161.6    243 sp|P0AG96|SECE_ECOLI -            127    0.0062   16.3   0.8   1   1   2.5e-06    0.0075   16.0   0.8     9   125     6   122     2   126 0.79 Protein of unknown function (DUF975)
HAMP                 PF00672.20    70 sp|P0AG96|SECE_ECOLI -            127     0.027   14.6   5.6   1   2     9e-06     0.027   14.6   5.6     3    40    19    56    17    83 0.78 HAMP domain
S19                  PF06756.6     75 sp|P0AG96|SECE_ECOLI -            127      0.17   11.7   0.0   1   1   0.00011      0.32   10.8   0.0    12    62    11    61     2    65 0.88 Chorion protein S19 C-terminal
S1FA                 PF04689.8     70 sp|P0AG96|SECE_ECOLI -            127      0.79    9.6   2.7   1   1   0.00014      0.41   10.5   0.4     5    34     4    35     1    46 0.76 DNA binding protein S1FA
SecD_SecF            PF02355.11   189 sp|P0AG93|SECF_ECOLI -            323   1.9e-68  229.3  10.7   1   1   7.9e-72   2.9e-68  228.7  10.7     4   188   117   301   114   302 0.97 Protein export membrane protein
Sec_GG               PF07549.9     31 sp|P0AG93|SECF_ECOLI -            323   6.9e-10   37.5   0.1   1   1   4.3e-13   1.6e-09   36.4   0.1     1    29    38    66    38    68 0.92 SecD/SecF GG Motif
ACR_tran             PF00873.14  1021 sp|P0AG93|SECF_ECOLI -            323    0.0012   16.4   7.9   1   1     4e-07    0.0015   16.0   7.9   326   484   138   294   111   313 0.76 AcrB/AcrD/AcrF family
Sterol-sensing       PF12349.3    153 sp|P0AG93|SECF_ECOLI -            323     0.025   14.0   2.2   1   1   1.4e-05     0.053   12.9   2.2     5   121   166   284   162   312 0.84 Sterol-sensing domain of SREBP cleavage-activation
SecG                 PF03840.9     74 sp|P0AG99|SECG_ECOLI -            110   9.6e-27   92.5   9.6   1   1   6.1e-30   1.1e-26   92.3   9.6     2    74     3    75     2    75 0.97 Preprotein translocase SecG subunit
Tic20                PF09685.5    109 sp|P0AG99|SECG_ECOLI -            110     0.065   13.2   2.5   1   1   6.7e-05      0.12   12.3   2.5    51   101     7    85     2    89 0.73 Tic20-like protein
DUF3357              PF11837.3    107 sp|P0AG99|SECG_ECOLI -            110     0.079   12.8   0.9   2   2   0.00011       0.2   11.5   0.0    30    76    53    98    35   106 0.82 Domain of unknown function (DUF3357)
DUF3742              PF12553.3     54 sp|P0AG99|SECG_ECOLI -            110     0.092   13.2   0.4   1   1   0.00011      0.21   12.0   0.3     2    17     4    19     3    39 0.88 Protein of unknown function (DUF3742)
PulG                 PF11773.3     82 sp|P0AG99|SECG_ECOLI -            110      0.15   11.7   0.6   1   1   0.00012      0.23   11.2   0.0     9    32    59    82    54    89 0.86 Type II secretory pathway pseudopilin
SecM                 PF06558.7    148 sp|P62395|SECM_ECOLI -            170     1e-67  226.4   2.0   1   1   1.6e-71   1.2e-67  226.2   2.0     1   147    24   169    24   170 0.99 Secretion monitor precursor protein (SecM)
DUF2547              PF10818.3     94 sp|P62395|SECM_ECOLI -            170   0.00044   20.8   0.3   1   1   5.4e-07     0.004   17.7   0.3     1    30    13    48    13   168 0.87 Protein of unknown function (DUF2547)
SecY                 PF00344.15   346 sp|P0AGA2|SECY_ECOLI -            443  4.5e-120  400.7  21.3   1   1  8.3e-124  6.2e-120  400.2  21.3     1   345    76   417    76   418 0.96 SecY translocase
DUF912               PF06024.7    101 sp|P0AGA2|SECY_ECOLI -            443     0.028   14.4   0.4   1   1   1.5e-05      0.11   12.5   0.4    67    94   216   243   205   253 0.83 Nucleopolyhedrovirus protein of unknown function (DUF912)
SelA                 PF03841.8    367 sp|P0A821|SELA_ECOLI -            463  1.7e-176  586.4   0.0   1   1    4e-180    2e-176  586.1   0.0     1   366    83   451    83   452 0.99 L-seryl-tRNA selenium transferase
Se-cys_synth_N       PF12390.3     40 sp|P0A821|SELA_ECOLI -            463     3e-10   40.0   0.6   1   2   6.1e-14     3e-10   40.0   0.6     1    40     9    48     9    48 0.99 Selenocysteine synthase N terminal
Aminotran_5          PF00266.14   371 sp|P0A821|SELA_ECOLI -            463     0.002   16.9   0.3   1   1   1.2e-06    0.0059   15.4   0.3    75   222   153   316   148   327 0.74 Aminotransferase class-V
GTP_EFTU             PF00009.22   188 sp|P14081|SELB_ECOLI -            614   4.1e-37  127.4   0.0   1   1   4.3e-40   7.1e-37  126.6   0.0     5   184     2   163     1   166 0.95 Elongation factor Tu GTP binding domain
SelB-wing_3          PF09107.6     50 sp|P14081|SELB_ECOLI -            614   9.1e-20   69.7   0.6   1   1   1.7e-22   2.8e-19   68.2   0.6     1    50   557   606   557   606 0.96 Elongation factor SelB, winged helix
SelB-wing_2          PF09106.6     59 sp|P14081|SELB_ECOLI -            614   2.2e-19   69.1   1.1   1   1   4.7e-22   7.7e-19   67.3   1.1     1    59   423   480   423   480 0.99 Elongation factor SelB, winged helix
GTP_EFTU_D2          PF03144.20    74 sp|P14081|SELB_ECOLI -            614     1e-08   35.1   0.0   1   1   1.9e-11     3e-08   33.6   0.0     1    73   189   256   189   257 0.94 Elongation factor Tu domain 2
MMR_HSR1             PF01926.18   116 sp|P14081|SELB_ECOLI -            614   1.6e-05   24.8   0.0   1   1   3.7e-08   6.1e-05   22.9   0.0     2   111     3   107     2   113 0.71 50S ribosome-binding GTPase
GTP_EFTU_D4          PF14578.1     81 sp|P14081|SELB_ECOLI -            614   0.00014   21.4   0.0   1   1   2.2e-07   0.00035   20.1   0.0     6    79   176   256   172   257 0.89 Elongation factor Tu domain 4
PduV-EutP            PF10662.4    143 sp|P14081|SELB_ECOLI -            614    0.0083   15.6   0.1   1   1   0.00012       0.2   11.1   0.1     7   141     6   161     1   163 0.60 Ethanolamine utilisation - propanediol utilisation
Miro                 PF08477.8    119 sp|P14081|SELB_ECOLI -            614     0.016   15.6   0.0   1   1   2.2e-05     0.037   14.5   0.0     5    87     6    88     3   110 0.81 Miro-like protein
SRPRB                PF09439.5    181 sp|P14081|SELB_ECOLI -            614      0.11   11.7   0.0   1   1   0.00011      0.18   10.9   0.0     8    68     5    70     1   124 0.84 Signal recognition particle receptor beta subunit
AIRS_C               PF02769.17   153 sp|P16456|SELD_ECOLI -            347   1.2e-28  100.0   0.4   1   1   2.3e-32   1.7e-28   99.5   0.4     1   151   169   343   169   345 0.85 AIR synthase related protein, C-terminal domain
AIRS                 PF00586.19    96 sp|P16456|SELD_ECOLI -            347     2e-19   69.5   0.2   1   1   7.2e-23   5.4e-19   68.2   0.2     2    95    50   140    49   141 0.97 AIR synthase related protein, N-terminal domain
Rhodanese            PF00581.15   113 sp|P33667|SELU_ECOLI -            364   6.9e-06   26.3   0.0   1   1   1.6e-08   2.7e-05   24.4   0.0    12   111    16   129     6   131 0.71 Rhodanese-like domain
T2SE                 PF00437.15   272 sp|P33667|SELU_ECOLI -            364   0.00039   19.4   0.1   1   2   1.6e-05     0.026   13.4   0.0   109   146   125   160   103   167 0.84 Type II/IV secretion system protein
FtsK_SpoIIIE         PF01580.13   205 sp|P33667|SELU_ECOLI -            364     0.034   13.6   0.1   1   2   0.00015      0.25   10.8   0.0    29    56   133   160   123   161 0.88 FtsK/SpoIIIE family
DUF3333              PF11812.3    155 sp|P33667|SELU_ECOLI -            364     0.056   13.4   0.0   1   1   9.1e-05      0.15   12.0   0.0    38   125   121   220   119   227 0.79 Domain of unknown function (DUF3333)
AAA_22               PF13401.1    131 sp|P33667|SELU_ECOLI -            364     0.059   13.5   0.0   1   1   7.6e-05      0.13   12.4   0.0     3    24   141   162   134   240 0.86 AAA domain
AAA_23               PF13476.1    202 sp|P33667|SELU_ECOLI -            364     0.062   13.6   0.0   1   1   6.2e-05       0.1   12.9   0.0    13    35   135   158   125   160 0.88 AAA domain
Zeta_toxin           PF06414.7    201 sp|P33667|SELU_ECOLI -            364     0.071   12.2   0.1   1   1   8.3e-05      0.14   11.2   0.1    10    33   136   159   127   170 0.81 Zeta toxin
AAA_19               PF13245.1     76 sp|P33667|SELU_ECOLI -            364      0.12   12.1   0.6   1   1   0.00017      0.27   10.9   0.3     4    28   134   159   131   161 0.77 Part of AAA domain
SeqA                 PF03925.8    190 sp|P0AFY8|SEQA_ECOLI -            181   3.5e-71  238.8   0.1   1   1   5.3e-75   3.9e-71  238.6   0.1     1   190     1   181     1   181 0.91 SeqA protein
DUF217               PF02697.9     71 sp|P0AFY8|SEQA_ECOLI -            181    0.0036   17.5   0.1   1   2   2.5e-06     0.019   15.2   0.0     1    33     1    34     1    43 0.88 Uncharacterized ACR, COG1753
2-Hacid_dh_C         PF02826.14   178 sp|P0A9T0|SERA_ECOLI -            410   1.6e-50  170.7   0.0   1   1   1.7e-53   3.1e-50  169.7   0.0     2   178   118   294   117   294 0.92 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
2-Hacid_dh           PF00389.25   133 sp|P0A9T0|SERA_ECOLI -            410   7.7e-38  128.9   0.0   1   1   6.6e-41   1.2e-37  128.3   0.0     2   133    14   326    13   326 0.99 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
ACT                  PF01842.20    66 sp|P0A9T0|SERA_ECOLI -            410   1.9e-10   40.0   0.1   1   1   4.2e-13   7.8e-10   38.0   0.0     7    66   344   402   339   402 0.95 ACT domain
NAD_binding_2        PF03446.10   163 sp|P0A9T0|SERA_ECOLI -            410   4.7e-06   26.5   0.7   1   2   2.7e-08     5e-05   23.1   0.0     2   113   152   258   151   265 0.90 NAD binding domain of 6-phosphogluconate dehydrogenase
ACT_4                PF13291.1     80 sp|P0A9T0|SERA_ECOLI -            410     0.026   14.8   0.0   1   1   3.1e-05     0.057   13.7   0.0    12    53   343   384   339   407 0.81 ACT domain
Ldh_1_N              PF00056.18   141 sp|P0A9T0|SERA_ECOLI -            410     0.097   12.4   0.0   1   1   0.00012      0.23   11.2   0.0     2    56   153   204   152   221 0.82 lactate/malate dehydrogenase, NAD binding domain
XdhC_C               PF13478.1    136 sp|P0A9T0|SERA_ECOLI -            410      0.11   12.7   0.1   2   2    0.0005      0.94    9.7   0.0     1    45   154   212   154   262 0.64 XdhC Rossmann domain
Hydrolase_3          PF08282.7    254 sp|P0AGB0|SERB_ECOLI -            322   1.1e-14   54.6   0.1   2   2   3.5e-16   7.3e-13   48.6   0.0   187   251   249   312   234   315 0.91 haloacid dehalogenase-like hydrolase
HAD                  PF12710.2    192 sp|P0AGB0|SERB_ECOLI -            322   2.1e-13   50.9   0.0   1   1   1.2e-16   2.5e-13   50.6   0.0    46   192   146   281    49   281 0.79 haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P0AGB0|SERB_ECOLI -            322   2.4e-11   44.4   0.6   1   1   1.7e-14   3.6e-11   43.8   0.6    43   215    95   284    53   284 0.76 haloacid dehalogenase-like hydrolase
Put_Phosphatase      PF06888.7    234 sp|P0AGB0|SERB_ECOLI -            322   0.00014   21.1   0.0   1   2   9.2e-07    0.0019   17.3   0.0     2   109   112   217   111   227 0.80 Putative Phosphatase
HAD_2                PF13419.1    176 sp|P0AGB0|SERB_ECOLI -            322    0.0029   17.8   0.0   1   1   2.8e-06    0.0059   16.8   0.0    25   173   131   287   113   290 0.64 Haloacid dehalogenase-like hydrolase
S6PP                 PF05116.8    247 sp|P0AGB0|SERB_ECOLI -            322    0.0054   16.0   0.0   2   2   6.7e-06     0.014   14.6   0.0   165   205   248   288   212   314 0.86 Sucrose-6F-phosphate phosphohydrolase
CHASE4               PF05228.8    161 sp|P0AGB0|SERB_ECOLI -            322     0.075   12.6   0.0   1   1   6.3e-05      0.13   11.8   0.0   108   151    16    59    11    67 0.85 CHASE4 domain
Aminotran_5          PF00266.14   371 sp|P23721|SERC_ECOLI -            362   3.9e-71  239.7   0.0   1   1   2.9e-75   4.3e-71  239.6   0.0     1   371     4   350     4   350 0.99 Aminotransferase class-V
MFS_1                PF07690.11   352 sp|P31675|SETA_ECOLI -            392   9.5e-39  133.0  81.5   1   2   6.2e-30   1.9e-26   92.6  43.7     2   340    19   344    18   346 0.88 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P31675|SETA_ECOLI -            392   9.5e-39  133.0  81.5   2   2   3.1e-18   9.1e-15   54.2  29.8     1   167   220   385   220   391 0.94 Major Facilitator Superfamily
MFS_2                PF13347.1    428 sp|P31675|SETA_ECOLI -            392    0.0034   15.8   5.9   1   3   1.1e-06    0.0034   15.8   5.9   227   347    15   135     5   141 0.84 MFS/sugar transport protein
ABC2_membrane_5      PF13346.1    206 sp|P31675|SETA_ECOLI -            392    0.0076   15.5   8.2   3   4   2.6e-06    0.0076   15.5   8.2    99   193   231   328   217   330 0.84 ABC-2 family transporter protein
Nuc_H_symport        PF03825.11   400 sp|P31675|SETA_ECOLI -            392       1.1    7.9  32.3   1   2   1.5e-05     0.045   12.5  22.6    19   313    29   320    11   329 0.77 Nucleoside H+ symporter
MFS_1                PF07690.11   352 sp|P33026|SETB_ECOLI -            393   2.9e-39  134.7  62.2   1   2     1e-40   7.5e-37  126.8  39.4     2   351    21   356    20   357 0.90 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P33026|SETB_ECOLI -            393   2.9e-39  134.7  62.2   2   2   9.2e-09   6.8e-05   21.7  14.8    80   171   300   388   298   393 0.90 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P31436|SETC_ECOLI -            394   5.4e-36  124.0  48.3   1   2   3.4e-38   5.1e-34  117.5  29.9     2   351    20   357    19   358 0.89 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P31436|SETC_ECOLI -            394   5.4e-36  124.0  48.3   2   2   1.3e-08   0.00019   20.3  10.5    91   172   312   390   301   393 0.92 Major Facilitator Superfamily
Esterase             PF00756.15   251 sp|P51025|SFGH1_ECOLI -            277   1.3e-76  257.3   0.1   1   1   9.2e-80   1.5e-76  257.1   0.1     1   250    21   268    21   269 0.99 Putative esterase
Esterase_phd         PF10503.4    220 sp|P51025|SFGH1_ECOLI -            277   1.6e-05   24.2   0.1   1   1     7e-08   0.00012   21.4   0.1     4   129    31   169    28   177 0.76 Esterase PHB depolymerase
Abhydrolase_5        PF12695.2    145 sp|P51025|SFGH1_ECOLI -            277   3.9e-05   23.4   0.0   1   1   3.1e-08   5.1e-05   23.0   0.0     6   106    50   200    44   255 0.69 Alpha/beta hydrolase family
Chlorophyllase2      PF12740.2    260 sp|P51025|SFGH1_ECOLI -            277   4.8e-05   22.3   0.0   1   1   4.2e-08   6.9e-05   21.8   0.0    13   121    39   165    27   215 0.73 Chlorophyllase enzyme
Abhydrolase_6        PF12697.2    228 sp|P51025|SFGH1_ECOLI -            277    0.0014   18.5   0.3   1   1   1.4e-06    0.0023   17.8   0.3    69   127   140   195    46   246 0.60 Alpha/beta hydrolase family
Lipase_3             PF01764.20   141 sp|P51025|SFGH1_ECOLI -            277    0.0017   17.9   0.0   1   1   1.6e-06    0.0026   17.3   0.0    38   114   111   187    65   210 0.75 Lipase (class 3)
Chlorophyllase       PF07224.6    307 sp|P51025|SFGH1_ECOLI -            277     0.018   13.8   0.0   1   1   8.3e-05      0.14   10.9   0.0   104   149   118   167    29   178 0.57 Chlorophyllase
Abhydrolase_1        PF00561.15   230 sp|P51025|SFGH1_ECOLI -            277     0.022   14.3   0.0   1   1   1.8e-05     0.029   13.9   0.0    49    72   142   168   113   255 0.70 alpha/beta hydrolase fold
Peptidase_S9         PF00326.16   213 sp|P51025|SFGH1_ECOLI -            277     0.062   12.5   0.0   1   1   5.4e-05     0.089   11.9   0.0    56   156   129   222    67   259 0.81 Prolyl oligopeptidase family
Esterase             PF00756.15   251 sp|P33018|SFGH2_ECOLI -            278   2.3e-72  243.4   0.0   1   1   2.1e-75   2.6e-72  243.2   0.0     1   251    21   271    21   271 0.99 Putative esterase
Abhydrolase_5        PF12695.2    145 sp|P33018|SFGH2_ECOLI -            278   6.6e-08   32.4   0.0   1   1     7e-11   8.7e-08   32.0   0.0     6   145    50   257    44   257 0.63 Alpha/beta hydrolase family
Peptidase_S9         PF00326.16   213 sp|P33018|SFGH2_ECOLI -            278     1e-06   28.1   0.0   1   1   1.3e-09   1.6e-06   27.4   0.0    54   208   127   274   118   278 0.77 Prolyl oligopeptidase family
Esterase_phd         PF10503.4    220 sp|P33018|SFGH2_ECOLI -            278   9.3e-06   25.0   0.0   1   2   4.8e-05      0.06   12.5   0.0     2    59    29    86    28   102 0.91 Esterase PHB depolymerase
Esterase_phd         PF10503.4    220 sp|P33018|SFGH2_ECOLI -            278   9.3e-06   25.0   0.0   2   2   0.00021      0.26   10.5   0.0    96   185   136   228   121   243 0.71 Esterase PHB depolymerase
Abhydrolase_6        PF12697.2    228 sp|P33018|SFGH2_ECOLI -            278   2.8e-05   24.0   0.3   1   1   5.5e-08   6.8e-05   22.8   0.2    49   157   111   237    49   270 0.65 Alpha/beta hydrolase family
Chlorophyllase2      PF12740.2    260 sp|P33018|SFGH2_ECOLI -            278    0.0021   16.9   0.0   1   1   2.6e-06    0.0033   16.3   0.0    76   123   119   169   102   183 0.78 Chlorophyllase enzyme
Lipase_3             PF01764.20   141 sp|P33018|SFGH2_ECOLI -            278    0.0052   16.3   0.0   1   1   5.3e-06    0.0065   16.0   0.0    44    84   115   157    62   217 0.79 Lipase (class 3)
Abhydrolase_1        PF00561.15   230 sp|P33018|SFGH2_ECOLI -            278     0.011   15.2   1.0   1   1   5.1e-05     0.063   12.8   0.8    20    88   110   238    93   249 0.66 alpha/beta hydrolase fold
Abhydrolase_3        PF07859.8    211 sp|P33018|SFGH2_ECOLI -            278     0.014   14.9   0.3   1   1   0.00022      0.27   10.7   0.2    68   110   133   176   110   260 0.56 alpha/beta hydrolase fold
Chlorophyllase       PF07224.6    307 sp|P33018|SFGH2_ECOLI -            278     0.048   12.4   0.0   1   1     6e-05     0.074   11.8   0.0   105   141   119   162   112   175 0.68 Chlorophyllase
PGAP1                PF07819.8    225 sp|P33018|SFGH2_ECOLI -            278     0.094   12.2   0.0   1   1   0.00015      0.19   11.3   0.0    64   109   119   161   110   194 0.74 PGAP1-like protein
NHR2                 PF08788.6     67 sp|P33018|SFGH2_ECOLI -            278      0.11   11.9   0.2   1   1   0.00016      0.19   11.2   0.2     7    29     7    28     1    30 0.80 NHR2 domain like
Fimbrial             PF00419.15   145 sp|P0ABW5|SFMA_ECOLI -            180   8.7e-20   71.4   7.7   1   1   2.1e-23     1e-19   71.1   7.7     1   145    30   180    30   180 0.87 Fimbrial protein
MAAL_N               PF05034.8    159 sp|P0ABW5|SFMA_ECOLI -            180     0.026   14.2   0.2   1   1   7.6e-06     0.037   13.7   0.2    28   131    47   157    37   177 0.76 Methylaspartate ammonia-lyase N-terminus
DUF1517              PF07466.6    289 sp|P0ABW5|SFMA_ECOLI -            180     0.058   12.3   0.0   1   1   1.6e-05      0.08   11.9   0.0   101   150    81   131    61   140 0.84 Protein of unknown function (DUF1517)
Usher                PF00577.15   552 sp|P77468|SFMD_ECOLI -            867  3.7e-207  689.4  23.3   1   1  1.2e-210  4.4e-207  689.1  23.3     5   552   202   775   198   775 0.99 Outer membrane usher protein
PapC_N               PF13954.1    146 sp|P77468|SFMD_ECOLI -            867   7.8e-49  165.0   0.0   1   1   3.7e-52   1.4e-48  164.1   0.0     2   146    38   189    37   189 0.98 PapC N-terminal domain
PapC_C               PF13953.1     68 sp|P77468|SFMD_ECOLI -            867     8e-23   79.8   0.1   1   1     6e-26   2.2e-22   78.4   0.1     1    67   785   850   785   851 0.96 PapC C-terminal domain
OEP                  PF02321.13   188 sp|P77468|SFMD_ECOLI -            867     0.016   14.7   4.4   2   2   0.00021       0.8    9.2   0.2    42    78   658   702   651   716 0.79 Outer membrane efflux protein
Fimbrial             PF00419.15   145 sp|P38052|SFMF_ECOLI -            171   1.4e-15   57.8   0.1   1   1   2.2e-19   1.6e-15   57.5   0.1     1   145    29   171    27   171 0.87 Fimbrial protein
SIP                  PF04954.8    119 sp|P38052|SFMF_ECOLI -            171     0.035   14.4   0.0   1   1   6.5e-06     0.048   14.0   0.0     3    53    60   111    58   148 0.76 Siderophore-interacting protein
PapD_N               PF00345.15   122 sp|P77249|SFMC_ECOLI -            230   2.4e-37  127.4   0.2   1   2   8.5e-41   6.3e-37  126.0   0.1     1   121    26   145    26   146 0.91 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_C               PF02753.12    68 sp|P77249|SFMC_ECOLI -            230   2.2e-16   59.4   0.3   1   1   5.2e-20   3.9e-16   58.6   0.3     1    65   165   223   165   226 0.96 Pili assembly chaperone PapD, C-terminal domain
Fimbrial             PF00419.15   145 sp|P75715|SFMH_ECOLI -            327   8.8e-19   68.1   0.1   1   1   9.3e-23   1.4e-18   67.5   0.1     2   145   180   327   179   327 0.92 Fimbrial protein
SfsA                 PF03749.8    216 sp|P0A823|SFSA_ECOLI -            234   5.1e-83  277.7   0.0   1   1   7.7e-87   5.7e-83  277.6   0.0     1   213    13   228    13   231 0.98 Sugar fermentation stimulation protein
DUF1431              PF07248.7    161 sp|P0A823|SFSA_ECOLI -            234     0.075   13.0   0.0   1   1   1.6e-05      0.12   12.3   0.0     7    33    45    68    36    82 0.86 Protein of unknown function (DUF1431)
HTH_35               PF13693.1     78 sp|P0ACH1|SFSB_ECOLI -             92   2.8e-38  129.5   0.2   1   1   4.3e-42   3.2e-38  129.3   0.2     1    78     7    85     7    85 0.98 Winged helix-turn-helix DNA-binding
ABC2_membrane_2      PF12679.2    277 sp|P0ACH1|SFSB_ECOLI -             92     0.035   12.9   0.0   1   1   5.9e-06     0.044   12.6   0.0    95   119    34    58    21    59 0.90 ABC-2 family transporter protein
OMPdecase            PF00215.19   226 sp|P37678|SGBH_ECOLI -            220   2.1e-28   99.2   0.2   1   1   3.2e-32   2.4e-28   99.0   0.2     2   223     5   204     4   207 0.94 Orotidine 5'-phosphate decarboxylase / HUMPS family
AP_endonuc_2         PF01261.19   213 sp|P37679|SGBU_ECOLI -            286   1.4e-32  112.7   0.0   1   1   3.5e-36   1.7e-32  112.4   0.0     3   213    25   234    23   234 0.96 Xylose isomerase-like TIM barrel
DUF1618              PF07762.9    131 sp|P37679|SGBU_ECOLI -            286     0.019   15.1   0.0   2   2   1.3e-05     0.066   13.4   0.0    38    83   217   262   203   281 0.85 Protein of unknown function (DUF1618)
UxuA                 PF03786.8    351 sp|P37679|SGBU_ECOLI -            286      0.08   11.4   0.0   1   1   2.3e-05      0.11   10.9   0.0   228   311   168   251   157   269 0.79 D-mannonate dehydratase (UxuA)
Aldolase_II          PF00596.16   184 sp|P37680|SGBE_ECOLI -            231   1.8e-45  154.8   1.2   1   1   2.9e-49   2.2e-45  154.5   1.2     2   182     8   196     7   198 0.92 Class II Aldolase and Adducin N-terminal domain
Prok-JAB             PF14464.1    105 sp|P37680|SGBE_ECOLI -            231     0.061   12.8   0.3   1   2   3.5e-05      0.26   10.8   0.1    40    78    55   107    20   120 0.69 Prokaryotic homologs of the JAB domain
Ribul_P_3_epim       PF00834.14   201 sp|P39362|SGCE_ECOLI -            210   6.4e-74  247.4   0.0   1   1   9.9e-78   7.3e-74  247.2   0.0     2   200     3   197     2   198 0.99 Ribulose-phosphate 3 epimerase family
TMP-TENI             PF02581.12   180 sp|P39362|SGCE_ECOLI -            210       0.1   11.7   0.1   1   1     2e-05      0.15   11.1   0.1   138   179   151   193   134   194 0.75 Thiamine monophosphate synthase/TENI
BtpA                 PF03437.10   254 sp|P39364|SGCQ_ECOLI -            268  1.3e-105  352.2   0.1   1   1  9.6e-110  1.4e-105  352.1   0.1     1   254    10   265    10   265 0.99 BtpA family
Peptidase_M42        PF05343.9    292 sp|P39366|SGCX_ECOLI -            373   7.5e-98  326.8   0.0   1   1  1.2e-101   8.7e-98  326.6   0.0     1   292    46   346    46   346 0.98 M42 glutamyl aminopeptidase
Peptidase_M20        PF01546.23   189 sp|P39366|SGCX_ECOLI -            373   6.2e-06   25.8   0.0   1   1   1.4e-09   1.1e-05   25.0   0.0    35   187   179   351   178   352 0.76 Peptidase family M20/M25/M40
Sugar_tr             PF00083.19   451 sp|P76350|SHIA_ECOLI -            438   8.2e-27   93.8  35.0   1   1   8.8e-29   6.5e-25   87.6  35.0     6   417    27   407    23   433 0.75 Sugar (and other) transporter
MFS_1                PF07690.11   352 sp|P76350|SHIA_ECOLI -            438   2.2e-26   92.4  50.2   1   2   1.3e-19   9.4e-16   57.4  24.0    38   254    70   294    27   301 0.72 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P76350|SHIA_ECOLI -            438   2.2e-26   92.4  50.2   2   2   2.8e-14   2.1e-10   39.8  22.7    22   171   276   431   265   438 0.77 Major Facilitator Superfamily
Transglut_core2      PF13369.1    152 sp|P0AGM5|SIRB1_ECOLI -            269   3.7e-37  127.1   0.0   1   1   1.4e-40   5.1e-37  126.7   0.0     2   151    33   184    32   185 0.96 Transglutaminase-like superfamily
TPR_9                PF13371.1     73 sp|P0AGM5|SIRB1_ECOLI -            269   2.4e-28   97.7   0.3   1   1   1.4e-31   5.1e-28   96.7   0.3     1    73   187   259   187   259 0.99 Tetratricopeptide repeat
STAT1_TAZ2bind       PF12162.3     23 sp|P0AGM5|SIRB1_ECOLI -            269     0.076   12.4   0.2   1   1   4.5e-05      0.17   11.3   0.2    13    23    33    43    31    43 0.91 STAT1 TAZ2 binding domain
Methyltransf_PK      PF05891.7    218 sp|P0AGM5|SIRB1_ECOLI -            269      0.11   11.8   0.0   1   1   4.9e-05      0.18   11.0   0.0    72   148   165   246   158   264 0.85 AdoMet dependent proline di-methyltransferase
His_Phos_1           PF00300.17   158 sp|P76502|SIXA_ECOLI -            161   1.6e-11   44.5   0.0   1   2   3.8e-15   5.6e-11   42.7   0.0     2    72     3    69     2    98 0.84 Histidine phosphatase superfamily (branch 1)
OmpH                 PF03938.9    158 sp|P0AEU7|SKP_ECOLI  -            161   7.2e-23   81.2  16.0   1   1   5.7e-27   8.5e-23   81.0  16.0     3   157    10   160     6   161 0.93 Outer membrane protein (OmpH-like)
TetR_N               PF00440.18    47 sp|P0C093|SLMA_ECOLI -            198   3.1e-11   42.7   0.0   1   1   3.4e-15     5e-11   42.0   0.0     3    46    18    61    16    62 0.94 Bacterial regulatory proteins, tetR family
SLT                  PF01464.15   121 sp|P0AGC3|SLT_ECOLI  -            645   4.3e-31  106.9   0.1   1   1   1.5e-34   7.6e-31  106.1   0.1     2   116   483   597   482   602 0.95 Transglycosylase SLT domain
SLT_L                PF14718.1     71 sp|P0AGC3|SLT_ECOLI  -            645   3.9e-24   84.2   4.8   2   2   7.9e-28   3.9e-24   84.2   4.8     3    71   404   472   402   472 0.97 Soluble lytic murein transglycosylase L domain
TPR_19               PF14559.1     68 sp|P0AGC3|SLT_ECOLI  -            645      0.15   12.4   4.6   2   2     3e-05      0.15   12.4   0.2    23    55   344   376   334   384 0.87 Tetratricopeptide repeat
Rick_17kDa_Anti      PF05433.10    42 sp|P0A905|SLYB_ECOLI -            155   1.5e-07   30.9  26.2   1   1   1.6e-10   2.7e-07   30.1  26.2     1    42    62   103    62   103 0.96 Glycine zipper 2TM domain
Gly-zipper_OmpA      PF13436.1    118 sp|P0A905|SLYB_ECOLI -            155   0.00015   21.4  10.2   1   1   1.3e-07   0.00021   20.9  10.2    50   100    58   107    22   116 0.87 Glycine-zipper containing OmpA-like membrane domain
Gly-zipper_YMGG      PF13441.1     45 sp|P0A905|SLYB_ECOLI -            155    0.0008   18.8  23.2   1   1   7.3e-07    0.0012   18.2  23.2     4    43    61   103    58   105 0.86 YMGG-like Gly-zipper
Gly-zipper_Omp       PF13488.1     46 sp|P0A905|SLYB_ECOLI -            155    0.0011   18.5  21.4   1   1   1.2e-06     0.002   17.7  21.4     1    45    62   109    61   110 0.86 Glycine zipper
TraT                 PF05818.7    215 sp|P0A905|SLYB_ECOLI -            155     0.003   17.0   4.3   1   1   2.2e-06    0.0036   16.7   4.3    62   159    42   132    21   152 0.66 Enterobacterial TraT complement resistance protein
DUF2076              PF09849.4    247 sp|P0A905|SLYB_ECOLI -            155    0.0088   16.1   3.2   1   1   6.9e-06     0.011   15.7   3.2   126   168    54   112    22   149 0.61 Uncharacterized protein conserved in bacteria (DUF2076)
DUF533               PF04391.7    189 sp|P0A905|SLYB_ECOLI -            155     0.063   12.6   2.5   1   1     6e-05     0.099   12.0   2.5    10    58    63   110    52   142 0.64 Protein of unknown function (DUF533)
Bacteriocin_IIc      PF10439.4     65 sp|P0A905|SLYB_ECOLI -            155      0.34   11.0  14.5   1   1    0.0004      0.67   10.1  14.5    15    60    52    99    47   104 0.74 Bacteriocin class II with double-glycine leader peptide
MarR                 PF01047.17    59 sp|P0A8W2|SLYA_ECOLI -            144   1.4e-18   66.3   1.5   1   1   1.7e-21   1.4e-18   66.3   0.1     1    58    29    87    29    88 0.98 MarR family
HTH_27               PF13463.1     68 sp|P0A8W2|SLYA_ECOLI -            144   3.3e-14   52.9   1.1   1   1   5.4e-17   4.5e-14   52.5   0.4     1    67    29    95    29    96 0.94 Winged helix DNA-binding domain
MarR_2               PF12802.2     62 sp|P0A8W2|SLYA_ECOLI -            144   9.4e-12   44.4   0.1   1   1     3e-14   2.5e-11   43.0   0.1     2    62    28    87    27    87 0.96 MarR family
HTH_20               PF12840.2     61 sp|P0A8W2|SLYA_ECOLI -            144   0.00079   19.1   0.6   1   2   6.8e-05     0.056   13.2   0.0    29    57    51    79    50    80 0.94 Helix-turn-helix domain
HTH_24               PF13412.1     48 sp|P0A8W2|SLYA_ECOLI -            144    0.0014   18.0   0.0   1   1   4.4e-06    0.0036   16.6   0.0    16    47    45    76    45    77 0.95 Winged helix-turn-helix DNA-binding
HxlR                 PF01638.12    91 sp|P0A8W2|SLYA_ECOLI -            144    0.0014   18.2   0.3   1   1   4.4e-06    0.0037   16.8   0.1    23    80    51   104    29   115 0.80 HxlR-like helix-turn-helix
B-block_TFIIIC       PF04182.7     75 sp|P0A8W2|SLYA_ECOLI -            144    0.0015   18.3   0.0   1   1   3.4e-06    0.0028   17.4   0.0    21    54    49    82    47   118 0.87 B-block binding subunit of TFIIIC
HTH_Crp_2            PF13545.1     76 sp|P0A8W2|SLYA_ECOLI -            144    0.0018   18.0   0.3   1   1   4.9e-06     0.004   16.9   0.3    29    60    47    83    21    96 0.82 Crp-like helix-turn-helix domain
TrmB                 PF01978.14    68 sp|P0A8W2|SLYA_ECOLI -            144    0.0021   17.7   0.2   1   1   1.2e-05    0.0097   15.5   0.0    27    55    51    79    48    91 0.92 Sugar-specific transcriptional regulator TrmB
HTH_5                PF01022.15    47 sp|P0A8W2|SLYA_ECOLI -            144    0.0028   17.2   0.1   2   2   0.00016      0.13   11.9   0.0    20    46    51    77    48    78 0.96 Bacterial regulatory protein, arsR family
DUF2250              PF10007.4     93 sp|P0A8W2|SLYA_ECOLI -            144     0.014   15.3   0.0   1   1   3.2e-05     0.027   14.3   0.0     5    67    28    90    24    98 0.73 Uncharacterized protein conserved in archaea (DUF2250)
LexA_DNA_bind        PF01726.11    65 sp|P0A8W2|SLYA_ECOLI -            144      0.02   14.4   0.1   1   1   9.4e-05     0.078   12.5   0.0    22    60    41    80    36    85 0.79 LexA DNA binding domain
GntR                 PF00392.16    64 sp|P0A8W2|SLYA_ECOLI -            144     0.028   13.8   0.0   1   1   0.00011     0.089   12.2   0.0    29    57    51    79    41    82 0.91 Bacterial regulatory proteins, gntR family
HTH_45               PF14947.1     77 sp|P0A8W2|SLYA_ECOLI -            144     0.049   13.4   0.1   1   1   0.00013       0.1   12.3   0.0    30    75    57   109    38   111 0.84 Winged helix-turn-helix
HTH_1                PF00126.22    60 sp|P0A8W2|SLYA_ECOLI -            144     0.056   13.1   0.2   1   1   0.00047      0.38   10.5   0.2    20    40    53    73    51    97 0.73 Bacterial regulatory helix-turn-helix protein, lysR family
HTH_36               PF13730.1     55 sp|P0A8W2|SLYA_ECOLI -            144     0.073   13.2   0.0   1   1   0.00018      0.15   12.2   0.0    27    55    48    76    36    76 0.89 Helix-turn-helix domain
PadR                 PF03551.9     75 sp|P0A8W2|SLYA_ECOLI -            144     0.073   12.8   0.0   1   1   0.00017      0.14   11.9   0.0    29    67    58    94    49   102 0.74 Transcriptional regulator PadR-like family
Fe_dep_repress       PF01325.14    60 sp|P0A8W2|SLYA_ECOLI -            144      0.08   12.8   0.0   1   1   0.00021      0.17   11.8   0.0    26    53    50    77    44    81 0.91 Iron dependent repressor, N-terminal DNA binding domain
FKBP_C               PF00254.23    94 sp|P0A9K9|SLYD_ECOLI -            196   7.1e-11   41.9   0.0   1   1   7.3e-15   1.1e-10   41.3   0.0     7    94     5   137     1   137 0.83 FKBP-type peptidyl-prolyl cis-trans isomerase
SlyX                 PF04102.7     69 sp|P0A8R4|SLYX_ECOLI -             72   4.5e-26   91.0   2.4   1   1   3.7e-29     5e-26   90.8   2.4     1    69     5    72     5    72 0.99 SlyX
DUF641               PF04859.7    132 sp|P0A8R4|SLYX_ECOLI -             72    0.0077   15.9   1.0   1   1   6.4e-06    0.0086   15.8   1.0    77   123     4    50     1    59 0.86 Plant protein of unknown function (DUF641)
Tropomyosin          PF00261.15   237 sp|P0A8R4|SLYX_ECOLI -             72    0.0077   15.3   2.0   1   1   6.6e-06    0.0089   15.1   2.0   139   189     6    56     3    68 0.86 Tropomyosin
CALCOCO1             PF07888.6    546 sp|P0A8R4|SLYX_ECOLI -             72     0.027   12.7   2.0   1   1   2.2e-05      0.03   12.6   2.0   251   307     4    60     2    67 0.90 Calcium binding and coiled-coil domain (CALCOCO1) like
CENP-Q               PF13094.1    160 sp|P0A8R4|SLYX_ECOLI -             72     0.043   13.8   2.8   1   1   3.6e-05     0.049   13.6   2.8    46   106     6    65     2    69 0.78 CENP-Q, a CENPA-CAD centromere complex subunit
Sugarporin_N         PF11471.3     60 sp|P0A8R4|SLYX_ECOLI -             72     0.044   13.4   2.9   1   2   3.2e-05     0.044   13.4   2.9    26    44     2    20     1    30 0.89 Maltoporin periplasmic N-terminal extension
Transposase_22       PF02994.9    370 sp|P0A8R4|SLYX_ECOLI -             72     0.061   11.8   0.2   1   1   4.5e-05     0.061   11.8   0.2   139   189     3    53     1    66 0.85 L1 transposable element
Flg_hook             PF02120.11    85 sp|P0A8R4|SLYX_ECOLI -             72     0.062   12.9   2.2   1   2   0.00036      0.48   10.1   0.1    53    78     6    31     4    37 0.90 Flagellar hook-length control protein FliK
Acyl_transf_1        PF00698.16   318 sp|P0A8R4|SLYX_ECOLI -             72     0.067   12.5   0.1   1   1   5.8e-05     0.078   12.3   0.1   166   216     8    58     6    69 0.87 Acyl transferase domain
ADIP                 PF11559.3    151 sp|P0A8R4|SLYX_ECOLI -             72     0.095   12.6   3.1   1   1   8.9e-05      0.12   12.2   3.1    56   110     5    59     2    67 0.82 Afadin- and alpha -actinin-Binding
DNA_processg_A       PF02481.10   212 sp|P30852|SMF_ECOLI  -            374   4.6e-73  244.6   0.0   1   1   7.9e-77   5.9e-73  244.2   0.0     2   211    67   274    66   275 0.98 DNA recombination-mediator protein A
HTH_9                PF08221.6     62 sp|P30852|SMF_ECOLI  -            374      0.15   11.9   0.0   1   1     5e-05      0.37   10.6   0.0    22    53    38    69    32    75 0.89 RNA polymerase III subunit RPC82 helix-turn-helix domain
DUF494               PF04361.8    155 sp|P0A828|SMG_ECOLI  -            157   4.5e-64  214.7   4.6   1   1   3.4e-68   5.1e-64  214.6   4.6     1   155     1   157     1   157 0.98 Protein of unknown function (DUF494)
SMP_2                PF10144.4    210 sp|P0AGC7|SMP_ECOLI  -            214  4.9e-110  365.6   0.2   1   1  1.5e-113  5.5e-110  365.4   0.2     1   210     1   210     1   210 1.00 Bacterial virulence factor haemolysin
DUF1110              PF06533.7    188 sp|P0AGC7|SMP_ECOLI  -            214    0.0038   17.0   0.1   1   1   1.9e-06    0.0069   16.2   0.1    20    92    41   111    32   129 0.83 Protein of unknown function (DUF1110)
DUF3426              PF11906.3    149 sp|P0AGC7|SMP_ECOLI  -            214    0.0078   15.8   0.8   1   1   7.4e-06     0.027   14.1   0.8     2    52    18    68    17   109 0.90 Protein of unknown function (DUF3426)
PepSY_TM             PF03929.11    27 sp|P0AGC7|SMP_ECOLI  -            214         1    9.8   6.4   1   2   0.00022      0.82   10.1   3.7     2    20     8    26     8    27 0.93 PepSY-associated TM helix
Sod_Cu               PF00080.15   142 sp|P0AGD1|SODC_ECOLI -            173   1.2e-31  109.8   1.3   1   1   9.1e-36   1.3e-31  109.6   1.3    10   142    35   172    17   172 0.88 Copper/zinc superoxide dismutase (SODC)
Sod_Fe_C             PF02777.13   106 sp|P0AGD3|SODF_ECOLI -            193   2.1e-45  152.8   1.9   3   3   1.5e-48   1.1e-44  150.5   0.2     1   105    87   190    87   191 0.98 Iron/manganese superoxide dismutases, C-terminal domain
Sod_Fe_N             PF00081.17    82 sp|P0AGD3|SODF_ECOLI -            193   2.3e-35  120.6   0.6   1   1   5.2e-39   3.9e-35  119.9   0.6     1    82     2    82     2    82 0.98 Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C             PF02777.13   106 sp|P00448|SODM_ECOLI -            206   4.8e-40  135.6   0.6   1   1   9.6e-44   7.2e-40  135.1   0.1     4   106    96   202    93   202 0.91 Iron/manganese superoxide dismutases, C-terminal domain
Sod_Fe_N             PF00081.17    82 sp|P00448|SODM_ECOLI -            206   8.7e-34  115.6   2.3   1   1   1.9e-37   1.4e-33  114.9   2.3     1    81     2    89     2    90 0.97 Iron/manganese superoxide dismutases, alpha-hairpin domain
Peptidase_S49_N      PF08496.5    155 sp|P0AG14|SOHB_ECOLI -            349   3.1e-64  215.4   3.5   1   1   2.3e-67   3.1e-64  215.4   3.5     1   155     1   158     1   158 0.98 Peptidase family S49 N-terminal
Peptidase_S49        PF01343.13   154 sp|P0AG14|SOHB_ECOLI -            349   1.3e-50  171.1   2.2   1   1   1.1e-53   1.5e-50  170.9   0.0     2   153   161   310   160   311 0.98 Peptidase family S49
SDH_sah              PF01972.11   286 sp|P0AG14|SOHB_ECOLI -            349   1.8e-05   23.6   1.8   2   2   1.9e-08   2.5e-05   23.2   0.1    89   163   133   208   119   225 0.81 Serine dehydrogenase proteinase
CLP_protease         PF00574.18   182 sp|P0AG14|SOHB_ECOLI -            349   0.00062   19.4   5.5   2   2   4.2e-06    0.0056   16.3   0.1    32   179   123   295   104   298 0.72 Clp protease
Neur_chan_memb       PF02932.11   237 sp|P0AG14|SOHB_ECOLI -            349     0.025   14.4   0.1   1   1   2.1e-05     0.028   14.3   0.1    57   147     3   115     2   299 0.60 Neurotransmitter-gated ion-channel transmembrane region
DUF106               PF01956.11   168 sp|P0AG14|SOHB_ECOLI -            349     0.035   13.6   0.6   1   1   4.6e-05     0.062   12.8   0.6    14    78    13    88     3   134 0.70 Integral membrane protein DUF106
CD20                 PF04103.10   150 sp|P0AG14|SOHB_ECOLI -            349     0.055   13.3   0.0   1   2   0.00047      0.64    9.9   0.0    63    99     9    65     4    91 0.70 CD20-like family
DUF4446              PF14584.1    152 sp|P0AG14|SOHB_ECOLI -            349      0.23   11.3   4.4   1   1   0.00042      0.57   10.0   3.6     3    77    14    90    11    97 0.67 Protein of unknown function (DUF4446)
MFS_1                PF07690.11   352 sp|P31122|SOTB_ECOLI -            396   3.9e-32  111.3  69.2   1   2   1.4e-35   4.2e-32  111.2  50.9     2   324    19   323    16   332 0.85 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P31122|SOTB_ECOLI -            396   0.00029   19.5  19.3   1   2   9.7e-08   0.00029   19.5  19.3    44   190    46   186    12   192 0.87 Sugar (and other) transporter
OATP                 PF03137.15   539 sp|P31122|SOTB_ECOLI -            396       4.9    5.0  16.2   1   2   0.00011      0.32    8.9   3.7     5    82    15    91    12   107 0.84 Organic Anion Transporter Polypeptide (OATP) family
Orn_Arg_deC_N        PF02784.11   251 sp|P21170|SPEA_ECOLI -            658   1.2e-71  240.8   0.1   1   1   2.3e-75   1.7e-71  240.3   0.1     2   251    99   368    98   368 0.98 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Orn_DAP_Arg_deC      PF00278.17   116 sp|P21170|SPEA_ECOLI -            658     2e-30  104.8   0.0   1   1   5.1e-34   3.8e-30  103.9   0.0     1   115   371   586   371   587 0.87 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Arginase             PF00491.16   278 sp|P60651|SPEB_ECOLI -            306   1.1e-84  283.9   0.5   1   1   1.8e-88   1.4e-84  283.7   0.5     1   277    33   297    33   298 0.92 Arginase family
UPF0489              PF12640.2    162 sp|P60651|SPEB_ECOLI -            306     0.092   12.9   0.2   1   1   1.9e-05      0.14   12.3   0.2    25    41   141   157   128   217 0.76 UPF0489 domain
AdoMet_dc            PF02675.10   106 sp|P0A7F6|SPED_ECOLI -            264     2e-35  120.8   0.0   1   2   6.9e-39   5.1e-35  119.5   0.0    11   106    39   169    32   169 0.98 S-adenosylmethionine decarboxylase
LPP                  PF04728.8     56 sp|P0A7F6|SPED_ECOLI -            264      0.11   12.3   0.0   1   1   3.7e-05      0.27   11.0   0.0     5    30   153   178   150   183 0.92 Lipoprotein leucine-zipper
Spermine_synth       PF01564.12   246 sp|P09158|SPEE_ECOLI -            288   7.6e-89  296.8   0.1   1   1   7.6e-92   1.1e-88  296.3   0.1     5   238     6   239     3   247 0.97 Spermine/spermidine synthase
Methyltransf_18      PF12847.2    112 sp|P09158|SPEE_ECOLI -            288   6.7e-07   29.8   0.0   1   1   8.7e-10   1.3e-06   28.9   0.0     3   110    79   191    77   193 0.78 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P09158|SPEE_ECOLI -            288   3.3e-05   23.9   0.0   1   1   4.7e-08     7e-05   22.8   0.0     3   112    80   189    78   192 0.89 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P09158|SPEE_ECOLI -            288   7.9e-05   22.2   0.0   1   1     9e-08   0.00013   21.5   0.0     4   112    78   194    75   245 0.75 Methyltransferase domain
MTS                  PF05175.9    170 sp|P09158|SPEE_ECOLI -            288   0.00034   20.0   0.0   1   1   4.4e-07   0.00066   19.1   0.0    29   141    75   191    64   216 0.82 Methyltransferase small domain
Methyltransf_11      PF08241.7     95 sp|P09158|SPEE_ECOLI -            288   0.00047   20.5   0.0   1   1   1.1e-06    0.0016   18.9   0.0     3    94    84   189    82   190 0.89 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P09158|SPEE_ECOLI -            288    0.0039   17.5   0.1   1   1   1.2e-05     0.018   15.4   0.0     2   100    82   185    81   186 0.71 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|P09158|SPEE_ECOLI -            288      0.03   14.7   0.0   1   1   6.9e-05       0.1   13.0   0.0     1    72    82   157    82   188 0.73 Methyltransferase domain
MetW                 PF07021.7    193 sp|P09158|SPEE_ECOLI -            288     0.056   12.8   0.2   2   2   0.00033      0.49    9.7   0.0    16    53    80   118    72   157 0.78 Methionine biosynthesis protein MetW
RrnaAD               PF00398.15   262 sp|P09158|SPEE_ECOLI -            288      0.11   11.4   0.0   1   2   0.00055      0.82    8.6   0.0    15    88    59   144    53   158 0.77 Ribosomal RNA adenine dimethylase
HD_4                 PF13328.1    153 sp|P0AG24|SPOT_ECOLI -            702     7e-54  181.6   1.2   1   1   3.3e-57     7e-54  181.6   1.2     2   152    27   175    26   176 0.97 HD domain
RelA_SpoT            PF04607.12   116 sp|P0AG24|SPOT_ECOLI -            702     9e-37  125.6   0.5   1   1   1.2e-39   2.6e-36  124.1   0.1     1   115   235   345   235   346 0.98 Region found in RelA / SpoT proteins
TGS                  PF02824.16    60 sp|P0AG24|SPOT_ECOLI -            702   3.4e-22   78.0   0.0   1   1   3.8e-25   8.1e-22   76.8   0.0     1    60   388   447   388   447 0.99 TGS domain
ACT_4                PF13291.1     80 sp|P0AG24|SPOT_ECOLI -            702   2.4e-18   66.2   2.5   1   1   2.9e-21   6.2e-18   64.9   1.4     2    80   622   699   621   699 0.97 ACT domain
HD                   PF01966.17   122 sp|P0AG24|SPOT_ECOLI -            702   1.4e-13   50.8   1.9   1   2   2.4e-16   5.1e-13   49.0   0.4     1   122    45   144    45   144 0.81 HD domain
DUF106               PF01956.11   168 sp|P0AG24|SPOT_ECOLI -            702     0.027   14.0   0.3   1   1   2.8e-05      0.06   12.8   0.3    30    96    68   133    63   137 0.85 Integral membrane protein DUF106
TFIIS_M              PF07500.9    115 sp|P0AG24|SPOT_ECOLI -            702      0.66   10.0   3.9   1   2   0.00034      0.72    9.9   0.2    48    84   462   498   451   519 0.84 Transcription factor S-II (TFIIS), central domain
Peptidase_S49        PF01343.13   154 sp|P08395|SPPA_ECOLI -            618  2.1e-101  336.1   0.1   1   2   4.7e-49   1.7e-45  154.5   0.0     2   152   141   294   140   296 0.98 Peptidase family S49
Peptidase_S49        PF01343.13   154 sp|P08395|SPPA_ECOLI -            618  2.1e-101  336.1   0.1   2   2   1.2e-56   4.3e-53  179.2   0.0     2   154   392   543   391   543 0.98 Peptidase family S49
CLP_protease         PF00574.18   182 sp|P08395|SPPA_ECOLI -            618   7.7e-07   28.9   0.3   1   2   3.8e-07    0.0014   18.3   0.3    44    97   363   419   326   428 0.79 Clp protease
SDH_sah              PF01972.11   286 sp|P08395|SPPA_ECOLI -            618    0.0014   17.4   0.0   2   2   1.2e-06    0.0044   15.8   0.1    82   154   356   431   349   435 0.83 Serine dehydrogenase proteinase
SprT-like            PF10263.4    157 sp|P39902|SPRT_ECOLI -            165   7.5e-26   90.6   0.8   1   1   3.7e-29   9.1e-26   90.3   0.8     2   154    19   163    18   165 0.88 SprT-like family
DUF45                PF01863.12   205 sp|P39902|SPRT_ECOLI -            165   0.00015   21.5   0.1   1   2   1.4e-07   0.00035   20.4   0.0   107   180    11    88     2    92 0.79 Protein of unknown function DUF45
Peptidase_MA_2       PF13485.1    128 sp|P39902|SPRT_ECOLI -            165   0.00066   19.7   0.8   1   1   4.8e-07    0.0012   18.8   0.8    12    54    56   104    45   107 0.75 Peptidase MA superfamily
zf-H2C2_2            PF13465.1     26 sp|P39902|SPRT_ECOLI -            165      0.08   13.2   1.7   2   2   0.00014      0.36   11.2   0.1     3    22   141   160   139   162 0.93 Zinc-finger double domain
Desulfoferrod_N      PF06397.7     36 sp|P39902|SPRT_ECOLI -            165      0.15   11.4   0.4   1   1   6.2e-05      0.15   11.4   0.4     5    14   151   160   148   163 0.86 Desulfoferrodoxin, N-terminal domain
DeoC                 PF01791.4    236 sp|P32141|SQUT_ECOLI -            292   2.3e-45  154.7   0.0   1   1   1.8e-49   2.6e-45  154.5   0.0     2   235    17   257    16   258 0.97 DeoC/LacD family aldolase
NAD_binding_2        PF03446.10   163 sp|P0A9V8|SQUU_ECOLI -            298   7.1e-48  162.5   1.4   1   1   7.2e-51   9.7e-48  162.0   1.4     1   161     1   162     1   164 0.98 NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11       PF14833.1    122 sp|P0A9V8|SQUU_ECOLI -            298   5.6e-27   94.2   0.1   1   1   7.3e-30   9.9e-27   93.4   0.1     1   120   165   284   165   286 0.98 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
F420_oxidored        PF03807.12    96 sp|P0A9V8|SQUU_ECOLI -            298   1.1e-08   35.3   0.0   1   1   1.8e-11   2.4e-08   34.3   0.0     2    74     4    70     3    96 0.80 NADP oxidoreductase coenzyme F420-dependent
UDPG_MGDP_dh_N       PF03721.9    185 sp|P0A9V8|SQUU_ECOLI -            298     4e-05   23.0   0.0   1   2   3.9e-07   0.00052   19.4   0.0     2    40     3    41     2    56 0.86 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
3HCDH_N              PF02737.13   180 sp|P0A9V8|SQUU_ECOLI -            298   0.00013   21.7   0.1   1   1   1.7e-07   0.00023   20.8   0.1     2    43     4    45     3    64 0.85 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
TrkA_N               PF02254.13   116 sp|P0A9V8|SQUU_ECOLI -            298   0.00057   19.8   0.0   1   1   7.6e-07     0.001   19.0   0.0     1    42     4    46     4    62 0.85 TrkA-N domain
IlvN                 PF07991.7    165 sp|P0A9V8|SQUU_ECOLI -            298     0.012   15.0   0.0   1   1   1.7e-05     0.023   14.0   0.0     6    70     3    67     1    92 0.86 Acetohydroxy acid isomeroreductase, catalytic domain
2-Hacid_dh_C         PF02826.14   178 sp|P0A9V8|SQUU_ECOLI -            298     0.022   13.8   0.0   1   1   3.1e-05     0.041   13.0   0.0    39   109     4    75     2   122 0.77 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
NAD_Gly3P_dh_N       PF01210.18   157 sp|P0A9V8|SQUU_ECOLI -            298     0.041   13.6   0.0   1   1   9.6e-05      0.13   11.9   0.0     2    43     4    45     3    75 0.88 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
ApbA                 PF02558.11   151 sp|P0A9V8|SQUU_ECOLI -            298     0.054   12.9   0.0   1   1   6.9e-05     0.094   12.1   0.0     1    41     4    45     4    69 0.88 Ketopantoate reductase PanE/ApbA
GlcNAc_2-epim        PF07221.6    346 sp|P32140|SQUS_ECOLI -            413  2.9e-123  411.2  12.1   1   1  4.6e-127  3.4e-123  411.0  12.1     2   346    32   387    31   387 0.99 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
Glyco_hydro_47       PF01532.15   452 sp|P32140|SQUS_ECOLI -            413      0.06   12.0   3.0   1   2   0.00012      0.85    8.1   0.1   355   389   172   206    99   238 0.70 Glycosyl hydrolase family 47
PfkB                 PF00294.19   301 sp|P32143|SQUV_ECOLI -            298   2.9e-63  213.8   0.5   1   1   4.3e-67   3.2e-63  213.6   0.5     3   299     3   285     1   287 0.93 pfkB family carbohydrate kinase
Phos_pyr_kin         PF08543.7    246 sp|P32143|SQUV_ECOLI -            298    0.0065   15.7   0.1   1   1   1.5e-06     0.011   14.9   0.1   140   225   190   268   161   273 0.76 Phosphomethylpyrimidine kinase
Ribosomal_S22        PF08136.6     45 sp|P68191|SRA_ECOLI  -             45   3.5e-32  110.3   1.3   1   1   2.5e-36   3.7e-32  110.2   1.3     1    45     1    45     1    45 1.00 30S ribosomal protein subunit S22 family
adh_short            PF00106.20   167 sp|P05707|SRLD_ECOLI -            259   4.4e-26   91.7   1.6   1   1   1.8e-29   5.3e-26   91.5   1.6     2   166     4   172     3   173 0.94 short chain dehydrogenase
adh_short_C2         PF13561.1    241 sp|P05707|SRLD_ECOLI -            259     2e-16   60.5   0.0   1   1   9.8e-20   2.9e-16   59.9   0.0     7   239    13   255     9   256 0.89 Enoyl-(Acyl carrier protein) reductase
KR                   PF08659.5    181 sp|P05707|SRLD_ECOLI -            259   5.1e-05   23.0   0.5   1   1     3e-08   8.8e-05   22.2   0.5     3   152     5   157     4   185 0.81 KR domain
3HCDH_N              PF02737.13   180 sp|P05707|SRLD_ECOLI -            259    0.0014   18.3   0.3   1   1   6.8e-07     0.002   17.7   0.3     3    56     6    60     3    87 0.78 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
UDPG_MGDP_dh_N       PF03721.9    185 sp|P05707|SRLD_ECOLI -            259      0.14   11.5   0.2   1   1   7.1e-05      0.21   10.9   0.2     5    42     7    45     3    65 0.85 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
DEAD                 PF00270.24   169 sp|P21507|SRMB_ECOLI -            444     2e-44  151.0   0.0   1   2   3.2e-47   7.8e-44  149.1   0.0     1   166    28   196    28   199 0.93 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|P21507|SRMB_ECOLI -            444   5.9e-27   93.3   0.0   1   1   4.6e-30   1.1e-26   92.4   0.0     3    78   268   343   266   343 0.98 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|P21507|SRMB_ECOLI -            444   8.4e-05   22.4   0.2   1   1   7.2e-08   0.00018   21.4   0.0    31   183    47   192    18   193 0.73 Type III restriction enzyme, res subunit
AAA_19               PF13245.1     76 sp|P21507|SRMB_ECOLI -            444   9.4e-05   22.0   1.1   1   2   6.4e-07    0.0016   18.1   0.1     6    62    38    96    29   111 0.73 Part of AAA domain
AAA_22               PF13401.1    131 sp|P21507|SRMB_ECOLI -            444     0.016   15.3   0.2   1   1   2.9e-05     0.071   13.2   0.1    11   102    48   165    44   186 0.70 AAA domain
CMS1                 PF14617.1    252 sp|P21507|SRMB_ECOLI -            444     0.053   12.5   0.0   1   1   2.1e-05     0.053   12.5   0.0   121   209    71   158    52   165 0.71 U3-containing 90S pre-ribosomal complex subunit
SRP54                PF00448.17   196 sp|P0AGD7|SRP54_ECOLI -            453   6.5e-76  254.1   0.3   1   1   1.2e-78     1e-75  253.5   0.3     1   196   100   296   100   296 0.99 SRP54-type protein, GTPase domain
SRP_SPB              PF02978.14   104 sp|P0AGD7|SRP54_ECOLI -            453   1.2e-36  125.1   7.9   1   1   1.4e-39   1.2e-36  125.1   7.9     2   104   329   427   328   427 0.99 Signal peptide binding domain
SRP54_N              PF02881.14    75 sp|P0AGD7|SRP54_ECOLI -            453   2.3e-21   75.6   0.5   1   1   2.7e-24   2.3e-21   75.6   0.5     1    75     5    82     5    82 0.99 SRP54-type protein, helical bundle domain
CbiA                 PF01656.18   195 sp|P0AGD7|SRP54_ECOLI -            453   2.6e-08   33.4   2.4   1   1     9e-11   7.4e-08   32.0   1.7     9   165   110   256   102   288 0.68 CobQ/CobB/MinD/ParA nucleotide binding domain
Zeta_toxin           PF06414.7    201 sp|P0AGD7|SRP54_ECOLI -            453   3.1e-05   23.1   0.0   1   1   7.2e-08   5.9e-05   22.2   0.0     8    56    91   143    85   213 0.72 Zeta toxin
AAA_31               PF13614.1    157 sp|P0AGD7|SRP54_ECOLI -            453     5e-05   23.2   0.1   1   2   0.00026      0.22   11.4   0.0     9    43   108   143   101   152 0.90 AAA domain
cobW                 PF02492.14   178 sp|P0AGD7|SRP54_ECOLI -            453   6.9e-05   22.3   0.4   1   1   2.2e-07   0.00018   20.9   0.4     2   152   102   251   100   260 0.79 CobW/HypB/UreG, nucleotide-binding domain
AAA_22               PF13401.1    131 sp|P0AGD7|SRP54_ECOLI -            453   0.00029   20.9   0.0   1   1   9.3e-07   0.00076   19.6   0.0     7   113   103   210    98   223 0.74 AAA domain
AAA_33               PF13671.1    143 sp|P0AGD7|SRP54_ECOLI -            453    0.0015   18.4   0.0   1   1   3.9e-06    0.0032   17.3   0.0     1    95   102   212   102   234 0.66 AAA domain
AAA_16               PF13191.1    185 sp|P0AGD7|SRP54_ECOLI -            453    0.0033   17.4   0.0   1   1   1.1e-05    0.0087   16.0   0.0    19    83    95   156    88   247 0.61 AAA ATPase domain
AAA_30               PF13604.1    196 sp|P0AGD7|SRP54_ECOLI -            453    0.0058   16.2   0.9   1   1   2.7e-05     0.023   14.3   0.9    14    67    96   156    90   253 0.68 AAA domain
AAA_24               PF13479.1    213 sp|P0AGD7|SRP54_ECOLI -            453      0.02   14.4   0.0   1   1   6.1e-05      0.05   13.1   0.0     6    89   103   206    99   224 0.74 AAA domain
Helicase_RecD        PF05127.9    177 sp|P0AGD7|SRP54_ECOLI -            453      0.03   13.9   0.0   1   1   6.8e-05     0.056   13.0   0.0     5   133   108   236   103   241 0.69 Helicase
AAA_19               PF13245.1     76 sp|P0AGD7|SRP54_ECOLI -            453     0.031   14.0   0.1   1   1   0.00012       0.1   12.3   0.1     7    49    97   136    92   159 0.79 Part of AAA domain
APS_kinase           PF01583.15   157 sp|P0AGD7|SRP54_ECOLI -            453     0.036   13.7   0.2   1   1   0.00016      0.13   11.9   0.0     2    49   100   148    99   154 0.84 Adenylylsulphate kinase
MobB                 PF03205.9    140 sp|P0AGD7|SRP54_ECOLI -            453     0.071   12.8   0.2   1   1   0.00024       0.2   11.3   0.2     2    39   102   139   101   145 0.94 Molybdopterin guanine dinucleotide synthesis protein B
KTI12                PF08433.5    270 sp|P0AGD7|SRP54_ECOLI -            453      0.14   11.2   2.4   1   2   0.00064      0.53    9.4   0.1     3    41   102   141   101   154 0.85 Chromatin associated protein KTI12
Amidohydro_1         PF01979.15   333 sp|Q46812|SSNA_ECOLI -            442   2.2e-48  165.6   0.1   1   1   1.3e-51   3.2e-48  165.0   0.1     1   333    53   375    53   375 0.96 Amidohydrolase family
Amidohydro_5         PF13594.1     68 sp|Q46812|SSNA_ECOLI -            442   4.1e-08   32.9   0.0   1   1   3.9e-11   9.6e-08   31.7   0.0     1    68    23   122    23   122 0.68 Amidohydrolase
Amidohydro_4         PF13147.1    304 sp|Q46812|SSNA_ECOLI -            442     0.019   15.0   4.9   1   1   1.3e-05     0.032   14.2   2.3     2   304    49   372    48   372 0.84 Amidohydrolase
DERM                 PF14704.1    152 sp|Q46812|SSNA_ECOLI -            442     0.088   12.7   0.0   1   1   5.7e-05      0.14   12.1   0.0    27    55   410   438   394   442 0.79 Dermatopontin
D-aminoacyl_C        PF07908.7     48 sp|Q46812|SSNA_ECOLI -            442      0.16   11.2   0.1   1   1   0.00014      0.35   10.2   0.1    20    35   400   415   400   418 0.89 D-aminoacylase, C-terminal region
GST_N_3              PF13417.1     75 sp|P0ACA3|SSPA_ECOLI -            212   2.1e-20   72.6   0.0   1   1   1.9e-23   4.1e-20   71.7   0.0     1    75    13    87    13    87 0.98 Glutathione S-transferase, N-terminal domain
GST_N                PF02798.15    76 sp|P0ACA3|SSPA_ECOLI -            212   2.2e-17   62.9   0.0   1   2   5.9e-20   1.2e-16   60.5   0.0     2    76    10    81     9    81 0.95 Glutathione S-transferase, N-terminal domain
GST_N_2              PF13409.1     70 sp|P0ACA3|SSPA_ECOLI -            212   6.6e-14   51.6   0.1   1   1   6.9e-17   1.5e-13   50.5   0.1     4    69    21    81    19    82 0.93 Glutathione S-transferase, N-terminal domain
GST_C                PF00043.20    95 sp|P0ACA3|SSPA_ECOLI -            212   6.6e-11   42.0   0.0   1   1   4.6e-14   9.7e-11   41.5   0.0     2    95   102   194   101   194 0.93 Glutathione S-transferase, C-terminal domain
GST_C_2              PF13410.1     69 sp|P0ACA3|SSPA_ECOLI -            212   2.4e-09   36.9   0.0   1   1   2.4e-12     5e-09   35.9   0.0     3    54   124   175   108   189 0.85 Glutathione S-transferase, C-terminal domain
GST_C_3              PF14497.1     99 sp|P0ACA3|SSPA_ECOLI -            212   0.00039   20.8   0.0   1   1   3.7e-07   0.00079   19.8   0.0    29    97   121   190   103   192 0.83 Glutathione S-transferase, C-terminal domain
Glutaredoxin         PF00462.19    60 sp|P0ACA3|SSPA_ECOLI -            212     0.039   13.9   0.0   1   1   4.1e-05     0.086   12.8   0.0     4    54    14    63    11    67 0.85 Glutaredoxin
SspB                 PF04386.8    155 sp|P0AFZ3|SSPB_ECOLI -            165   3.7e-47  159.8   0.0   1   1     3e-51   4.5e-47  159.5   0.0     5   155     8   165     5   165 0.90 Stringent starvation protein B
SmpB                 PF01668.13    68 sp|P0A832|SSRP_ECOLI -            160   1.4e-29  101.6   0.0   1   1   1.5e-33   2.3e-29  100.9   0.0     2    67    13    78    12    80 0.96 SmpB protein
SDF                  PF00375.13   390 sp|P0AGE4|SSTT_ECOLI -            414   1.6e-63  214.8  34.9   1   1   1.3e-67   1.9e-63  214.5  34.9     1   385    18   397    18   401 0.89 Sodium:dicarboxylate symporter family
NMT1                 PF09084.6    216 sp|P75853|SSUA_ECOLI -            319   2.6e-14   53.3   0.0   1   2   3.2e-17   6.9e-14   51.9   0.0    29   147    64   183    57   243 0.87 NMT1/THI5 like
SBP_bac_3            PF00497.15   225 sp|P75853|SSUA_ECOLI -            319     2e-13   50.0   0.0   1   2   0.00014      0.29   10.3   0.0   108   157    29    82    14   108 0.80 Bacterial extracellular solute-binding proteins, family 3
SBP_bac_3            PF00497.15   225 sp|P75853|SSUA_ECOLI -            319     2e-13   50.0   0.0   2   2   7.4e-13   1.6e-09   37.3   0.0    87   212   111   236   103   245 0.83 Bacterial extracellular solute-binding proteins, family 3
NMT1_2               PF13379.1    252 sp|P75853|SSUA_ECOLI -            319   2.3e-12   46.8   0.0   1   1   1.4e-15     3e-12   46.4   0.0     4   248    25   252    22   256 0.83 NMT1-like family
Phosphonate-bd       PF12974.2    243 sp|P75853|SSUA_ECOLI -            319   9.2e-10   38.3   0.1   1   1   7.1e-13   1.5e-09   37.6   0.0    41   171    68   190    49   265 0.82 ABC transporter, phosphonate, periplasmic substrate-binding protein
OpuAC                PF04069.7    257 sp|P75853|SSUA_ECOLI -            319   3.8e-08   32.9   0.0   1   1   2.6e-11   5.5e-08   32.4   0.0     3   235    29   246    27   268 0.78 Substrate binding domain of ABC-type glycine betaine transport system
LysR_substrate       PF03466.15   209 sp|P75853|SSUA_ECOLI -            319    0.0012   17.9   0.0   1   1   1.1e-06    0.0024   17.0   0.0     8   130    29   155    22   218 0.87 LysR substrate binding domain
HEM4                 PF02602.10   231 sp|P75853|SSUA_ECOLI -            319     0.019   14.1   0.0   1   1   1.7e-05     0.035   13.3   0.0   114   174   126   182   109   205 0.90 Uroporphyrinogen-III synthase HemD
ABC_tran             PF00005.22   137 sp|P0AAI1|SSUB_ECOLI -            255   1.8e-29  102.7   0.0   1   1   3.4e-32   2.6e-29  102.2   0.0     1   136    27   160    27   161 0.87 ABC transporter
AAA_21               PF13304.1    303 sp|P0AAI1|SSUB_ECOLI -            255     2e-06   28.0   0.0   1   2   0.00011     0.085   12.8   0.0     2    22    40    60    39    82 0.89 AAA domain
AAA_21               PF13304.1    303 sp|P0AAI1|SSUB_ECOLI -            255     2e-06   28.0   0.0   2   2     8e-05     0.063   13.2   0.0   235   298   131   192   120   196 0.77 AAA domain
AAA_22               PF13401.1    131 sp|P0AAI1|SSUB_ECOLI -            255   2.5e-06   27.6   0.0   1   1     8e-09   6.2e-06   26.3   0.0     5   123    38   190    33   196 0.74 AAA domain
AAA_28               PF13521.1    163 sp|P0AAI1|SSUB_ECOLI -            255   0.00018   21.5   0.1   1   2   9.7e-05     0.076   12.9   0.0     2    31    40    69    39   127 0.73 AAA domain
AAA_33               PF13671.1    143 sp|P0AAI1|SSUB_ECOLI -            255    0.0019   18.1   0.1   1   1   8.4e-06    0.0066   16.3   0.0     2   111    40   198    39   203 0.81 AAA domain
AAA_16               PF13191.1    185 sp|P0AAI1|SSUB_ECOLI -            255    0.0021   18.0   0.5   1   1   5.7e-06    0.0045   16.9   0.5    23   158    36   158    26   192 0.57 AAA ATPase domain
SMC_N                PF02463.14   220 sp|P0AAI1|SSUB_ECOLI -            255     0.003   16.8   0.0   2   2    0.0006      0.46    9.6   0.0   136   211   132   203    76   211 0.78 RecF/RecN/SMC N terminal domain
DUF258               PF03193.11   161 sp|P0AAI1|SSUB_ECOLI -            255    0.0035   16.5   0.0   1   1     7e-06    0.0055   15.9   0.0    26    63    27    65     8    83 0.79 Protein of unknown function, DUF258
MMR_HSR1             PF01926.18   116 sp|P0AAI1|SSUB_ECOLI -            255    0.0043   16.9   0.0   1   1   9.2e-06    0.0072   16.2   0.0     2    58    40   104    39   156 0.69 50S ribosome-binding GTPase
AAA_25               PF13481.1    194 sp|P0AAI1|SSUB_ECOLI -            255    0.0047   16.3   0.1   1   1   2.5e-05     0.019   14.3   0.0    29    54    33    58    23    90 0.87 AAA domain
AAA_17               PF13207.1    121 sp|P0AAI1|SSUB_ECOLI -            255    0.0079   17.0   0.7   1   1   2.1e-05     0.017   15.9   0.7     2    21    40    59    39   253 0.88 AAA domain
AAA_10               PF12846.2    304 sp|P0AAI1|SSUB_ECOLI -            255    0.0099   15.3   0.1   1   2   9.6e-05     0.075   12.4   0.0     4    22    40    58    37    84 0.85 AAA-like domain
AAA_29               PF13555.1     62 sp|P0AAI1|SSUB_ECOLI -            255     0.012   15.1   0.0   1   1   3.2e-05     0.025   14.0   0.0    21    40    35    54    27    64 0.86 P-loop containing region of AAA domain
Miro                 PF08477.8    119 sp|P0AAI1|SSUB_ECOLI -            255     0.022   15.2   0.0   1   1   5.4e-05     0.042   14.3   0.0     2    36    40    81    40    95 0.76 Miro-like protein
AAA_18               PF13238.1    129 sp|P0AAI1|SSUB_ECOLI -            255     0.052   13.8   0.8   1   1   0.00018      0.14   12.4   0.0     1    23    40    66    40    90 0.82 AAA domain
NACHT                PF05729.7    166 sp|P0AAI1|SSUB_ECOLI -            255     0.095   12.3   0.5   1   1    0.0004      0.31   10.6   0.1     2    21    39    58    38    63 0.89 NACHT domain
NB-ARC               PF00931.17   287 sp|P0AAI1|SSUB_ECOLI -            255     0.099   11.4   0.0   1   1   0.00032      0.25   10.1   0.0     8    37    26    55    19    58 0.86 NB-ARC domain
SbcCD_C              PF13558.1     90 sp|P0AAI1|SSUB_ECOLI -            255      0.28   11.1   1.1   1   1    0.0011      0.83    9.6   0.1    33    88   133   175   123   177 0.77 Putative exonuclease SbcCD, C subunit
BPD_transp_1         PF00528.17   185 sp|P75851|SSUC_ECOLI -            263   7.5e-28   97.2  12.8   2   2   5.1e-32   7.5e-28   97.2  12.8     1   181    80   247    76   251 0.97 Binding-protein-dependent transport system inner membrane component
Bac_luciferase       PF00296.15   307 sp|P80645|SSUD_ECOLI -            381   8.8e-80  268.0   5.6   1   1   7.3e-84   1.1e-79  267.7   5.6     3   306     5   325     3   326 0.97 Luciferase-like monooxygenase
FMN_red              PF03358.10   152 sp|P80644|SSUE_ECOLI -            191   5.7e-36  123.3   0.0   1   1     1e-39   7.7e-36  122.8   0.0     1   148     1   141     1   144 0.94 NADPH-dependent FMN reductase
Flavodoxin_2         PF02525.12   199 sp|P80644|SSUE_ECOLI -            191   7.9e-07   28.7   0.0   1   2   2.1e-10   1.5e-06   27.8   0.0     1   103     1    91     1   129 0.85 Flavodoxin-like fold
Collar               PF07484.7     57 sp|P33227|STFE_ECOLI -            166   2.9e-15   55.8   0.1   1   1   3.2e-19   4.7e-15   55.1   0.1     1    57    12    59    12    59 0.98 Phage Tail Collar Domain
phage_tail_N         PF08400.5    134 sp|P76072|STFR_ECOLI -           1120   1.3e-58  196.4   0.3   1   2   4.4e-62   1.3e-58  196.4   0.3     1   134     1   134     1   134 0.99 Prophage tail fibre N-terminal
Collar               PF07484.7     57 sp|P76072|STFR_ECOLI -           1120   2.7e-11   43.0   0.2   1   1   2.2e-14   6.6e-11   41.8   0.2     1    56   907   953   907   954 0.97 Phage Tail Collar Domain
Phage_fiber          PF03335.8     14 sp|P76072|STFR_ECOLI -           1120   1.1e-06   27.4  61.4   2   7   3.2e-05     0.096   12.3   4.3     1    14  1002  1015  1002  1015 0.94 Phage tail fibre repeat
Phage_fiber          PF03335.8     14 sp|P76072|STFR_ECOLI -           1120   1.1e-06   27.4  61.4   3   7   0.00033      0.97    9.3   1.0     1    11  1016  1026  1016  1029 0.87 Phage tail fibre repeat
Phage_fiber          PF03335.8     14 sp|P76072|STFR_ECOLI -           1120   1.1e-06   27.4  61.4   4   7   7.2e-05      0.21   11.3   4.2     1    14  1055  1068  1055  1068 0.92 Phage tail fibre repeat
CarboxypepD_reg      PF13620.1     82 sp|P76072|STFR_ECOLI -           1120   2.1e-06   27.6   0.2   1   2   7.2e-10   2.1e-06   27.6   0.2     1    74     4    82     4    89 0.81 Carboxypeptidase regulatory-like domain
DUF4480              PF13715.1     88 sp|P76072|STFR_ECOLI -           1120     0.014   15.4   0.3   1   1   1.7e-05     0.051   13.6   0.1     1    49     4    61     4    78 0.78 Domain of unknown function (DUF4480)
Collar               PF07484.7     57 sp|P77515|STFQ_ECOLI -            320   3.2e-11   42.8   0.2   1   1     1e-14   7.5e-11   41.6   0.2     1    56    94   140    94   141 0.97 Phage Tail Collar Domain
Phage_fiber          PF03335.8     14 sp|P77515|STFQ_ECOLI -            320   1.7e-08   32.9  66.5   2   8   7.3e-05      0.54   10.0   2.2     1    14   157   170   157   170 0.88 Phage tail fibre repeat
Phage_fiber          PF03335.8     14 sp|P77515|STFQ_ECOLI -            320   1.7e-08   32.9  66.5   3   8   3.4e-06     0.025   14.1   3.9     1    14   189   202   189   202 0.92 Phage tail fibre repeat
Phage_fiber          PF03335.8     14 sp|P77515|STFQ_ECOLI -            320   1.7e-08   32.9  66.5   4   8     3e-05      0.22   11.2   1.2     1    12   203   214   203   216 0.90 Phage tail fibre repeat
Phage_fiber          PF03335.8     14 sp|P77515|STFQ_ECOLI -            320   1.7e-08   32.9  66.5   5   8     2e-05      0.15   11.8   2.9     1    14   255   268   255   268 0.90 Phage tail fibre repeat
Phage_fiber          PF03335.8     14 sp|P77515|STFQ_ECOLI -            320   1.7e-08   32.9  66.5   6   8   7.3e-05      0.54   10.1   2.5     2    12   270   280   269   281 0.89 Phage tail fibre repeat
Phage_fiber          PF03335.8     14 sp|P77515|STFQ_ECOLI -            320   1.7e-08   32.9  66.5   7   8   5.2e-05      0.39   10.5   2.4     2    13   279   290   278   291 0.86 Phage tail fibre repeat
Phage_fiber          PF03335.8     14 sp|P77515|STFQ_ECOLI -            320   1.7e-08   32.9  66.5   8   8   7.3e-05      0.54   10.0   1.3     2    13   288   299   287   300 0.87 Phage tail fibre repeat
Pyr_redox_2          PF07992.9    201 sp|P27306|STHA_ECOLI -            466   4.2e-32  111.6   0.0   1   1     1e-34   8.7e-32  110.6   0.0     1   199     8   315     8   317 0.89 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim        PF02852.17   110 sp|P27306|STHA_ECOLI -            466   4.4e-30  103.9   0.8   1   1   1.3e-32   1.1e-29  102.6   0.7     1   109   346   457   346   458 0.97 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Pyr_redox            PF00070.22    80 sp|P27306|STHA_ECOLI -            466   1.9e-18   66.6   1.7   2   2     1e-18   8.7e-16   58.1   0.0     1    76   178   251   178   258 0.94 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P27306|STHA_ECOLI -            466   2.8e-08   34.0   0.0   1   2     4e-10   3.5e-07   30.4   0.0     1   176    10   185    10   212 0.70 Pyridine nucleotide-disulphide oxidoreductase
FAD_oxidored         PF12831.2    428 sp|P27306|STHA_ECOLI -            466   1.1e-05   24.7   0.0   1   1   2.2e-08     2e-05   23.9   0.0     1    43     8    50     8   101 0.89 FAD dependent oxidoreductase
Thi4                 PF01946.12   230 sp|P27306|STHA_ECOLI -            466   1.6e-05   24.1   0.4   1   2   8.2e-08   7.2e-05   21.9   0.3    17    61     6    50     2    64 0.89 Thi4 family
FAD_binding_2        PF00890.19   417 sp|P27306|STHA_ECOLI -            466   1.9e-05   23.7   3.2   1   2   7.8e-08   6.8e-05   21.8   2.3     1    40     8    48     8    51 0.96 FAD binding domain
NAD_binding_8        PF13450.1     68 sp|P27306|STHA_ECOLI -            466   3.5e-05   23.7   0.7   1   2   3.3e-07   0.00029   20.8   0.2     1    55    11    66    11    81 0.79 NAD(P)-binding Rossmann-like domain
HI0933_like          PF03486.9    409 sp|P27306|STHA_ECOLI -            466   0.00016   20.3   1.1   1   2     2e-05     0.018   13.5   1.6     1    36     7    42     7    46 0.95 HI0933-like protein
GIDA                 PF01134.17   392 sp|P27306|STHA_ECOLI -            466   0.00042   19.2   0.3   1   3   0.00016      0.14   10.9   0.2     1    34     8    40     8    72 0.76 Glucose inhibited division protein A
DAO                  PF01266.19   358 sp|P27306|STHA_ECOLI -            466   0.00044   19.2   2.5   1   1   7.7e-07   0.00068   18.6   0.2     1    40     8    48     8    86 0.89 FAD dependent oxidoreductase
3HCDH_N              PF02737.13   180 sp|P27306|STHA_ECOLI -            466   0.00055   19.6   0.3   2   2   0.00045      0.39   10.3   0.0     1    47   178   224   178   244 0.89 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AlaDh_PNT_C          PF01262.16   168 sp|P27306|STHA_ECOLI -            466    0.0015   18.1   0.0   2   2   4.2e-05     0.036   13.6   0.0    19    60   175   216   171   235 0.89 Alanine dehydrogenase/PNT, C-terminal domain
FAD_binding_3        PF01494.14   356 sp|P27306|STHA_ECOLI -            466     0.002   17.2   2.1   1   1   3.6e-06    0.0031   16.5   0.5     2    34     7    39     6    42 0.94 FAD binding domain
K_oxygenase          PF13434.1    341 sp|P27306|STHA_ECOLI -            466    0.0022   16.9   0.0   1   1   4.5e-06    0.0039   16.1   0.0   131   204   124   190    68   223 0.75 L-lysine 6-monooxygenase (NADPH-requiring)
NAD_binding_9        PF13454.1    156 sp|P27306|STHA_ECOLI -            466    0.0032   17.2   0.0   1   2   0.00095      0.83    9.4   0.0     2    67    11    80    10   114 0.66 FAD-NAD(P)-binding
2-Hacid_dh_C         PF02826.14   178 sp|P27306|STHA_ECOLI -            466    0.0079   15.3   0.1   1   1     4e-05     0.035   13.2   0.0    30    70   170   210   148   246 0.75 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Histone_HNS          PF00816.16    93 sp|P0ACG1|STPA_ECOLI -            134   2.3e-20   72.8   7.8   2   2   4.4e-24   3.3e-20   72.3   7.2     5    93    28   129    24   129 0.87 H-NS histone family
Pex19                PF04614.7    249 sp|P0ACG1|STPA_ECOLI -            134     0.022   14.3   0.4   1   1     4e-06     0.029   13.9   0.3   187   230    43    87    23   125 0.77 Pex19 protein family
SBP_bac_11           PF13531.1    230 sp|P0AG78|SUBI_ECOLI -            329     2e-44  151.9   0.2   1   1     1e-47   2.5e-44  151.6   0.2     3   230    27   280    25   280 0.88 Bacterial extracellular solute-binding protein
SBP_bac_1            PF01547.20   315 sp|P0AG78|SUBI_ECOLI -            329   1.2e-18   67.9   2.8   1   1   6.3e-22   1.6e-18   67.5   2.8     4   315    32   272    29   272 0.88 Bacterial extracellular solute-binding protein
SBP_bac_8            PF13416.1    281 sp|P0AG78|SUBI_ECOLI -            329   1.9e-13   50.7   1.2   1   1   1.4e-16   3.3e-13   49.9   1.2    85   262   108   281    34   300 0.75 Bacterial extracellular solute-binding protein
SBP_bac_6            PF13343.1    242 sp|P0AG78|SUBI_ECOLI -            329     4e-13   49.2   1.1   1   1     3e-16   7.4e-13   48.3   1.1    53   235   112   303    77   306 0.83 Bacterial extracellular solute-binding protein
PBP_like             PF12727.2    193 sp|P0AG78|SUBI_ECOLI -            329   2.7e-05   23.1   0.0   1   1   2.1e-08   5.2e-05   22.2   0.0    66   178   111   234    49   246 0.67 PBP superfamily domain
PBP_like_2           PF12849.2    281 sp|P0AG78|SUBI_ECOLI -            329     0.002   17.6   1.0   1   1   1.4e-06    0.0035   16.8   1.0    14   280    26   268    14   269 0.62 PBP superfamily domain
ATP-grasp_2          PF08442.5    202 sp|P0A836|SUCC_ECOLI -            388   1.5e-82  275.8   0.0   1   1   7.1e-86   2.1e-82  275.4   0.0     1   202     2   203     2   203 1.00 ATP-grasp domain
Ligase_CoA           PF00549.14   153 sp|P0A836|SUCC_ECOLI -            388   1.1e-24   86.7   3.4   1   1   6.4e-28   1.9e-24   86.0   3.4     1   153   262   382   262   382 0.98 CoA-ligase
ATP-grasp_5          PF13549.1    222 sp|P0A836|SUCC_ECOLI -            388   1.6e-13   50.3   0.1   1   1   1.5e-16   4.4e-13   48.9   0.1    10   219     3   215     1   217 0.83 ATP-grasp domain
ATP-grasp_4          PF13535.1    184 sp|P0A836|SUCC_ECOLI -            388   9.1e-08   32.0   0.1   1   1   7.6e-11   2.3e-07   30.7   0.0     7   101     7   117     4   200 0.77 ATP-grasp domain
GARS_A               PF01071.14   194 sp|P0A836|SUCC_ECOLI -            388    0.0013   18.2   0.0   1   1     8e-07    0.0024   17.4   0.0     6   105     8   119     4   128 0.79 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
CoA_binding          PF02629.14    96 sp|P0AGE9|SUCD_ECOLI -            289   1.8e-30  105.2   0.7   1   2   4.9e-34   1.8e-30  105.2   0.7     1    96     6    99     6    99 0.99 CoA binding domain
Ligase_CoA           PF00549.14   153 sp|P0AGE9|SUCD_ECOLI -            289   2.6e-20   72.5   0.6   1   1   1.2e-23   4.3e-20   71.8   0.6     1   152   151   271   151   272 0.96 CoA-ligase
Succ_CoA_lig         PF13607.1    138 sp|P0AGE9|SUCD_ECOLI -            289   9.9e-12   44.6   0.0   1   1   4.7e-15   1.7e-11   43.8   0.0     1   138   145   284   145   287 0.83 Succinyl-CoA ligase like flavodoxin domain
CoA_binding_2        PF13380.1    116 sp|P0AGE9|SUCD_ECOLI -            289   6.5e-05   23.0   0.4   1   2   8.5e-08   0.00032   20.8   0.0    33   115    39   129    25   130 0.87 CoA binding domain
Alpha-amylase        PF00128.19   316 sp|P76041|SUCP_ECOLI -            559   4.2e-18   65.8   0.0   1   2   1.8e-20   2.6e-16   59.8   0.0    21   271    84   338    73   342 0.75 Alpha amylase, catalytic domain
UPF0051              PF01458.12   230 sp|P77522|SUFB_ECOLI -            495   6.3e-62  209.0   0.2   1   1   5.3e-66   7.9e-62  208.7   0.2     3   230   231   466   229   466 0.97 Uncharacterized protein family (UPF0051)
Fe-S_biosyn          PF01521.15   112 sp|P77667|SUFA_ECOLI -            122   1.1e-18   67.2   0.0   1   1     8e-23   1.2e-18   67.0   0.0     3   112    18   118    16   118 0.98 Iron-sulphur cluster biosynthesis
ABC_tran             PF00005.22   137 sp|P77499|SUFC_ECOLI -            248   3.3e-20   72.7   0.0   1   1   4.1e-23   4.3e-20   72.4   0.0     1   135    17   172    17   174 0.81 ABC transporter
SMC_N                PF02463.14   220 sp|P77499|SUFC_ECOLI -            248   1.1e-07   31.2   0.2   1   2   1.8e-05     0.019   14.2   0.0    25    42    28    45    14    49 0.82 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|P77499|SUFC_ECOLI -            248   1.1e-07   31.2   0.2   2   2   8.7e-06    0.0092   15.2   0.0   137   203   146   209    98   224 0.81 RecF/RecN/SMC N terminal domain
AAA_21               PF13304.1    303 sp|P77499|SUFC_ECOLI -            248   1.6e-06   28.3   0.2   1   1   4.5e-08   4.7e-05   23.4   0.2     2   303    30   209    29   209 0.78 AAA domain
AAA_29               PF13555.1     62 sp|P77499|SUFC_ECOLI -            248   0.00027   20.3   0.1   1   1   5.1e-07   0.00054   19.4   0.1    16    39    21    43    16    48 0.82 P-loop containing region of AAA domain
AAA_25               PF13481.1    194 sp|P77499|SUFC_ECOLI -            248    0.0011   18.4   0.0   1   1     2e-06    0.0021   17.4   0.0    30    59    24    56    11    81 0.74 AAA domain
AAA_17               PF13207.1    121 sp|P77499|SUFC_ECOLI -            248    0.0013   19.5   0.1   1   1   3.1e-06    0.0032   18.2   0.1     3    27    31    55    29   238 0.83 AAA domain
DUF258               PF03193.11   161 sp|P77499|SUFC_ECOLI -            248    0.0025   17.0   0.0   1   1   3.9e-06    0.0041   16.3   0.0    16    64     7    56     2    71 0.87 Protein of unknown function, DUF258
AAA_13               PF13166.1    712 sp|P77499|SUFC_ECOLI -            248    0.0033   15.9   0.0   1   1   4.1e-06    0.0043   15.5   0.0    20    56    31    63    24   105 0.81 AAA domain
AAA_33               PF13671.1    143 sp|P77499|SUFC_ECOLI -            248    0.0041   17.0   0.0   1   1   4.7e-06     0.005   16.7   0.0     2    28    30    56    29   147 0.90 AAA domain
AAA_23               PF13476.1    202 sp|P77499|SUFC_ECOLI -            248    0.0049   17.2   0.0   1   1     1e-05     0.011   16.0   0.0    11    35    18    43     4    46 0.85 AAA domain
AAA_28               PF13521.1    163 sp|P77499|SUFC_ECOLI -            248     0.011   15.7   0.2   1   2   8.5e-05      0.09   12.7   0.1     3    26    31    55    29    62 0.85 AAA domain
AAA_22               PF13401.1    131 sp|P77499|SUFC_ECOLI -            248     0.017   15.2   0.2   1   1   8.1e-05     0.085   12.9   0.2     8    64    31   108    25   211 0.57 AAA domain
AAA_18               PF13238.1    129 sp|P77499|SUFC_ECOLI -            248     0.088   13.1   0.5   1   2   0.00078      0.83    9.9   0.1     2    22    31    51    31    78 0.81 AAA domain
UPF0051              PF01458.12   230 sp|P77689|SUFD_ECOLI -            423   2.7e-78  262.5   3.7   1   1   2.3e-82   3.5e-78  262.2   3.7     4   230   167   393   164   393 0.99 Uncharacterized protein family (UPF0051)
SufE                 PF02657.10   125 sp|P76194|SUFE_ECOLI -            138   4.3e-50  168.5   0.0   1   1   3.3e-54   4.9e-50  168.3   0.0     2   124    11   134    10   135 0.98 Fe-S metabolism associated domain
Aminotran_5          PF00266.14   371 sp|P77444|SUFS_ECOLI -            406  5.5e-159  528.8   0.0   1   1  1.7e-162  6.2e-159  528.6   0.0     2   371    26   394    25   394 1.00 Aminotransferase class-V
Beta_elim_lyase      PF01212.16   290 sp|P77444|SUFS_ECOLI -            406   0.00027   20.1   0.0   1   1   9.2e-08   0.00034   19.8   0.0    91   215   137   246    43   320 0.83 Beta-eliminating lyase
DegT_DnrJ_EryC1      PF01041.12   363 sp|P77444|SUFS_ECOLI -            406    0.0035   16.4   0.1   1   1   1.4e-06    0.0052   15.8   0.1    50   151    95   205    60   208 0.78 DegT/DnrJ/EryC1/StrS aminotransferase family
Cys_Met_Meta_PP      PF01053.15   386 sp|P77444|SUFS_ECOLI -            406     0.008   14.5   0.1   2   2   9.4e-06     0.035   12.3   0.0    91   191   110   217   102   229 0.80 Cys/Met metabolism PLP-dependent enzyme
Multi_Drug_Res       PF00893.14    93 sp|P69937|SUGE_ECOLI -            105   5.7e-33  113.2  10.3   1   1   1.5e-36   7.2e-33  112.9  10.3     1    93     1    93     1    93 0.99 Small Multidrug Resistance protein
EamA                 PF00892.15   126 sp|P69937|SUGE_ECOLI -            105     0.011   15.8  13.4   1   1   5.2e-06     0.026   14.5  13.4    58   124    33   100     1   102 0.81 EamA-like transporter family
YhhN                 PF07947.9    185 sp|P69937|SUGE_ECOLI -            105      0.12   11.7   9.3   1   1   2.8e-05      0.14   11.5   9.3    83   153     4    77     1   100 0.69 YhhN-like protein
Inositol_P           PF00459.20   271 sp|P0ADG4|SUHB_ECOLI -            267   2.7e-77  259.7   0.0   1   1   6.2e-81     3e-77  259.5   0.0     3   268     2   260     1   263 0.97 Inositol monophosphatase family
FBPase_glpX          PF03320.8    309 sp|P0ADG4|SUHB_ECOLI -            267      0.08   11.5   0.1   1   1   2.1e-05      0.11   11.1   0.1    10   108     6   108     1   117 0.76 Bacterial fructose-1,6-bisphosphatase, glpX-encoded
FBPase               PF00316.15   325 sp|P0ADG4|SUHB_ECOLI -            267     0.084   11.6   0.0   1   1   2.6e-05      0.13   11.0   0.0    53   115    33    91     2    97 0.78 Fructose-1-6-bisphosphatase
SulA                 PF03846.9    119 sp|P0AFZ5|SULA_ECOLI -            169   2.4e-63  211.1   4.5   1   1   2.2e-67   3.2e-63  210.7   4.5     2   118     3   119     2   120 0.99 Cell division inhibitor SulA
Hydrolase_3          PF08282.7    254 sp|P75792|SUPH_ECOLI -            271   5.2e-53  180.2   0.0   1   1     2e-56   5.9e-53  180.0   0.0     1   254     6   259     6   259 0.94 haloacid dehalogenase-like hydrolase
S6PP                 PF05116.8    247 sp|P75792|SUPH_ECOLI -            271   1.3e-16   60.6   0.0   1   2   3.4e-05       0.1   11.8   0.0     3    47     4    49     2    76 0.86 Sucrose-6F-phosphate phosphohydrolase
S6PP                 PF05116.8    247 sp|P75792|SUPH_ECOLI -            271   1.3e-16   60.6   0.0   2   2   6.5e-16   1.9e-12   47.0   0.0    98   224   124   249   109   265 0.80 Sucrose-6F-phosphate phosphohydrolase
HAD                  PF12710.2    192 sp|P75792|SUPH_ECOLI -            271   1.1e-07   32.1   0.0   1   1   3.6e-10   1.1e-06   28.9   0.0    88   192    24   224     6   224 0.78 haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P75792|SUPH_ECOLI -            271   4.8e-07   30.4   0.2   1   1   4.7e-09   1.4e-05   25.6   0.2     1   214     3   226     3   227 0.67 haloacid dehalogenase-like hydrolase
Baculo_LEF5          PF04838.7    159 sp|P75792|SUPH_ECOLI -            271     0.077   12.7   0.1   1   1   5.2e-05      0.16   11.7   0.1    32   150    33   153    18   158 0.69 Baculoviridae late expression factor 5
SurE                 PF01975.12   197 sp|P0A840|SURE_ECOLI -            253   2.1e-63  213.2   0.0   1   1   1.7e-67   2.6e-63  212.9   0.0     1   195     1   182     1   184 0.93 Survival protein SurE
TfoX_N               PF04993.8     97 sp|P75869|SXY_ECOLI  -            209   7.8e-27   92.9   0.1   1   1   1.8e-30   1.4e-26   92.1   0.1     2    97    13   108    12   108 0.98 TfoX N-terminal domain
TfoX_C               PF04994.8     81 sp|P75869|SXY_ECOLI  -            209   1.9e-26   91.7   0.3   2   2   5.9e-30   4.4e-26   90.5   0.1     2    81   116   195   115   195 0.98 TfoX C-terminal domain
tRNA-synt_2c         PF01411.14   552 sp|P00957|SYA_ECOLI  -            876  1.6e-242  805.7   0.0   1   1  1.2e-245  2.4e-242  805.1   0.0     1   552     7   556     7   556 0.99 tRNA synthetases class II (A)
tRNA_SAD             PF07973.9     44 sp|P00957|SYA_ECOLI  -            876   2.6e-18   65.6   1.4   1   1   2.6e-21   5.6e-18   64.5   0.2     1    44   653   696   653   696 0.99 Threonyl and Alanyl tRNA synthetase second additional domain
DHHA1                PF02272.14    68 sp|P00957|SYA_ECOLI  -            876   3.5e-16   58.6   3.6   1   1     5e-19   1.1e-15   57.1   3.6     2    67   800   868   799   869 0.92 DHHA1 domain
LuxS                 PF02664.10   157 sp|P00957|SYA_ECOLI  -            876     0.044   13.3   0.1   1   1     4e-05     0.086   12.3   0.1    13    77   570   633   560   656 0.83 S-Ribosylhomocysteinase (LuxS)
ADIP                 PF11559.3    151 sp|P00957|SYA_ECOLI  -            876      0.61    9.9   6.8   2   2    0.0002      0.42   10.5   2.2    60   114   703   757   699   766 0.91 Afadin- and alpha -actinin-Binding
DUF904               PF06005.7     72 sp|P00957|SYA_ECOLI  -            876       5.4    7.3   8.0   1   1   0.00016      0.33   11.2   1.5     8    40   727   759   716   770 0.81 Protein of unknown function (DUF904)
tRNA-synt_1e         PF01406.14   301 sp|P21888|SYC_ECOLI  -            461  5.6e-144  478.8   0.1   1   1  2.9e-147  7.1e-144  478.4   0.1     2   300    15   313    14   314 0.99 tRNA synthetases class I (C) catalytic domain
DALR_2               PF09190.6     63 sp|P21888|SYC_ECOLI  -            461   2.1e-26   91.9   1.7   1   2   8.6e-30   2.1e-26   91.9   1.7     1    63   341   402   341   402 0.99 DALR domain
tRNA-synt_1g         PF09334.6    391 sp|P21888|SYC_ECOLI  -            461   3.4e-16   58.9   1.9   1   2   5.7e-10   1.4e-06   27.2   0.1    13   112    35   133    29   147 0.82 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|P21888|SYC_ECOLI  -            461   3.4e-16   58.9   1.9   2   2   3.8e-11   9.3e-08   31.1   0.2   312   373   251   311   231   317 0.85 tRNA synthetases class I (M)
tRNA-synt_1f         PF01921.13   360 sp|P21888|SYC_ECOLI  -            461   1.7e-07   30.2   0.0   2   2   2.5e-08   6.1e-05   21.8   0.0   276   317   261   301   214   329 0.85 tRNA synthetases class I (K)
tRNA-synt_1          PF00133.17   601 sp|P21888|SYC_ECOLI  -            461   1.2e-06   26.8   0.2   2   2   4.1e-09     1e-05   23.7   0.0   515   596   221   300   206   305 0.81 tRNA synthetases class I (I, L, M and V)
Mut7-C               PF01927.11   147 sp|P21888|SYC_ECOLI  -            461     0.012   15.5   0.0   1   1   9.2e-06     0.023   14.6   0.0    11    62    49   104    45   143 0.69 Mut7-C RNAse domain
Syd                  PF07348.7    176 sp|P0A8U0|SYDP_ECOLI -            181   7.7e-66  220.7   0.0   1   1   5.8e-70   8.6e-66  220.5   0.0     2   176     6   179     5   179 0.99 Syd protein (SUKH-2)
tRNA-synt_2          PF00152.15   335 sp|P21889|SYD_ECOLI  -            590  8.7e-132  438.9   0.0   1   1  3.5e-135    1e-131  438.6   0.0     2   334   118   558   117   559 0.99 tRNA synthetases class II (D, K and N)
GAD                  PF02938.9     95 sp|P21889|SYD_ECOLI  -            590   7.9e-32  109.2   0.1   1   1   4.8e-35   1.4e-31  108.4   0.1     1    95   307   406   307   406 0.97 GAD domain
tRNA_anti-codon      PF01336.20    75 sp|P21889|SYD_ECOLI  -            590   1.4e-16   60.1   0.1   1   1   1.1e-19   3.2e-16   58.9   0.1     1    75    18   102    18   102 0.96 OB-fold nucleic acid binding domain
tRNA-synt_2b         PF00587.20   173 sp|P21889|SYD_ECOLI  -            590   4.6e-05   23.0   0.1   2   2   4.5e-05      0.13   11.7   0.1    85   133   208   254   197   288 0.79 tRNA synthetase class II core domain (G, H, P, S and T)
tRNA-synt_2d         PF01409.15   247 sp|P21889|SYD_ECOLI  -            590   0.00042   19.5   0.1   2   2   0.00011      0.34   10.0   0.0   213   237   530   552   517   556 0.81 tRNA synthetases class II core domain (F)
tRNA-synt_1c         PF00749.16   314 sp|P04805|SYE_ECOLI  -            471  5.5e-126  419.4   0.0   1   1  1.8e-129  8.8e-126  418.8   0.0     1   314     2   305     2   305 0.99 tRNA synthetases class I (E and Q), catalytic domain
HTH_15               PF12324.3     77 sp|P04805|SYE_ECOLI  -            471      0.11   12.1   0.1   1   1   6.3e-05      0.31   10.7   0.1    39    62   390   413   380   419 0.88 Helix-turn-helix domain of alkylmercury lyase
DUF3150              PF11348.3    257 sp|P04805|SYE_ECOLI  -            471      0.13   11.3   0.0   1   1   4.2e-05      0.21   10.6   0.0   130   229   313   413   289   426 0.80 Protein of unknown function (DUF3150)
tRNA-synt_2d         PF01409.15   247 sp|P08312|SYFA_ECOLI -            327  1.2e-106  355.4   0.1   1   1    3e-110  1.5e-106  355.1   0.1     2   247    92   326    91   326 0.99 tRNA synthetases class II core domain (F)
Phe_tRNA-synt_N      PF02912.13    73 sp|P08312|SYFA_ECOLI -            327   2.4e-29  100.8   1.7   1   2   8.1e-33     4e-29  100.1   1.0     2    73    17    88    16    88 0.98 Aminoacyl tRNA synthetase class II, N-terminal domain
FAD-oxidase_C        PF02913.14   248 sp|P08312|SYFA_ECOLI -            327     0.058   12.7   0.3   2   2   8.1e-05       0.4    9.9   0.0    90   141    54   102    41   104 0.84 FAD linked oxidases, C-terminal domain
B3_4                 PF03483.12   174 sp|P07395|SYFB_ECOLI -            795   3.3e-72  241.5   0.0   1   1   1.4e-75   5.4e-72  240.8   0.0     1   174   212   385   212   385 1.00 B3/4 domain
FDX-ACB              PF03147.9     94 sp|P07395|SYFB_ECOLI -            795     9e-29   99.5   0.0   1   1   4.5e-32   1.7e-28   98.6   0.0     1    94   701   794   701   794 0.99 Ferredoxin-fold anticodon binding domain
tRNA_bind            PF01588.15    95 sp|P07395|SYFB_ECOLI -            795     3e-27   94.3   0.3   1   1   2.1e-30   7.8e-27   92.9   0.1     1    95    45   146    45   146 0.95 Putative tRNA binding domain
B5                   PF03484.10    70 sp|P07395|SYFB_ECOLI -            795   1.1e-21   76.4   0.7   1   1   1.3e-24   4.9e-21   74.3   0.1     2    70   404   471   403   471 0.98 tRNA synthetase B5 domain
tRNA-synt_2e         PF02091.10   284 sp|P00960|SYGA_ECOLI -            303  3.6e-160  531.6   0.0   1   1  2.7e-164    4e-160  531.4   0.0     1   284     9   298     9   298 0.99 Glycyl-tRNA synthetase alpha subunit
tRNA_synt_2f         PF02092.12   549 sp|P00961|SYGB_ECOLI -            689  1.6e-228  759.7   0.0   1   1  4.2e-232  2.1e-228  759.3   0.0     1   548     6   552     6   553 1.00 Glycyl-tRNA synthetase beta subunit
DALR_1               PF05746.10   119 sp|P00961|SYGB_ECOLI -            689   8.3e-09   35.4   0.7   1   1   5.4e-12   2.7e-08   33.7   0.7     4   104   582   679   579   685 0.90 DALR anticodon binding domain
tRNA-synt_His        PF13393.1    311 sp|P60906|SYH_ECOLI  -            424   3.1e-48  164.4   0.0   1   1   1.6e-51     4e-48  164.0   0.0     1   311    10   312    10   312 0.89 Histidyl-tRNA synthetase
tRNA-synt_2b         PF00587.20   173 sp|P60906|SYH_ECOLI  -            424   7.7e-29  100.4   0.0   1   1   5.3e-32   1.3e-28   99.7   0.0     1   167    21   182    21   188 0.95 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon       PF03129.15    94 sp|P60906|SYH_ECOLI  -            424   4.4e-11   42.5   0.0   1   1   4.7e-14   1.2e-10   41.2   0.0     8    92   335   420   329   422 0.83 Anticodon binding domain
tRNA-synt_2          PF00152.15   335 sp|P60906|SYH_ECOLI  -            424   5.1e-05   22.2   0.0   1   2   2.6e-05     0.064   12.0   0.0    94   189   103   198    95   274 0.73 tRNA synthetases class II (D, K and N)
tRNA-synt_2d         PF01409.15   247 sp|P60906|SYH_ECOLI  -            424     0.004   16.3   0.0   1   2   1.8e-05     0.044   12.9   0.0    12   132    15   132     4   147 0.83 tRNA synthetases class II core domain (F)
TBP-binding          PF09247.6     62 sp|P60906|SYH_ECOLI  -            424     0.021   15.0   0.3   2   2   5.3e-05      0.13   12.4   0.1    29    47   226   243   217   249 0.85 TATA box-binding protein binding
tRNA-synt_1          PF00133.17   601 sp|P00956|SYI_ECOLI  -            938    1e-232  773.4   0.0   1   1  7.4e-236  1.2e-232  773.2   0.0     2   601    28   641    27   641 0.98 tRNA synthetases class I (I, L, M and V)
Anticodon_1          PF08264.8    153 sp|P00956|SYI_ECOLI  -            938   6.7e-29  100.6   0.0   1   1   7.7e-32   1.3e-28   99.7   0.0     1   152   685   841   685   842 0.89 Anticodon-binding domain of tRNA
tRNA-synt_1g         PF09334.6    391 sp|P00956|SYI_ECOLI  -            938   5.1e-21   74.7   0.2   1   3     9e-14   1.5e-10   40.3   0.0     8    69    58   119    56   246 0.63 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|P00956|SYI_ECOLI  -            938   5.1e-21   74.7   0.2   3   3   3.1e-08   5.2e-05   22.0   0.0   310   356   584   631   566   650 0.81 tRNA synthetases class I (M)
zf-FPG_IleRS         PF06827.9     30 sp|P00956|SYI_ECOLI  -            938   1.1e-09   37.6   3.5   3   3   6.9e-13   1.1e-09   37.6   3.5     1    29   898   926   898   927 0.96 Zinc finger found in FPG and IleRS
tRNA-synt_1e         PF01406.14   301 sp|P00956|SYI_ECOLI  -            938   3.2e-08   33.0   0.0   2   2   2.8e-09   4.6e-06   25.9   0.0   227   299   575   648   548   650 0.83 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1_2        PF13603.1    185 sp|P00956|SYI_ECOLI  -            938   8.8e-07   28.3   0.0   1   1   9.8e-10   1.6e-06   27.5   0.0    12   141   224   358   219   368 0.78 Leucyl-tRNA synthetase, Domain 2
tRNA-synt_1f         PF01921.13   360 sp|P00956|SYI_ECOLI  -            938   3.1e-06   26.1   0.0   2   2   7.7e-09   1.3e-05   24.1   0.0   241   340   562   659   545   675 0.81 tRNA synthetases class I (K)
tRNA-synt_1d         PF00750.14   354 sp|P00956|SYI_ECOLI  -            938      0.06   12.1   0.2   2   2   0.00018       0.3    9.8   0.0   242   304   558   618   547   627 0.78 tRNA synthetases class I (R)
tRNA-synt_2          PF00152.15   335 sp|P0A8N3|SYK1_ECOLI -            505   1.8e-98  329.4   0.5   1   1  6.1e-102   2.3e-98  329.0   0.5     2   334   163   502   162   503 0.91 tRNA synthetases class II (D, K and N)
tRNA_anti-codon      PF01336.20    75 sp|P0A8N3|SYK1_ECOLI -            505     6e-15   54.8   0.0   1   1     3e-18   1.1e-14   53.9   0.0     1    75    68   146    68   146 0.98 OB-fold nucleic acid binding domain
tRNA-synt_2d         PF01409.15   247 sp|P0A8N3|SYK1_ECOLI -            505   5.4e-05   22.4   1.3   2   3   5.3e-05       0.2   10.8   0.1   104   153   254   301   251   324 0.78 tRNA synthetases class II core domain (F)
tRNA-synt_2d         PF01409.15   247 sp|P0A8N3|SYK1_ECOLI -            505   5.4e-05   22.4   1.3   3   3   0.00024      0.88    8.7   0.0   214   236   473   495   464   498 0.90 tRNA synthetases class II core domain (F)
tRNA-synt_2          PF00152.15   335 sp|P0A8N5|SYK2_ECOLI -            505   1.6e-98  329.5   1.0   1   1  5.8e-102   2.1e-98  329.1   1.0     1   334   162   502   162   503 0.90 tRNA synthetases class II (D, K and N)
tRNA_anti-codon      PF01336.20    75 sp|P0A8N5|SYK2_ECOLI -            505   1.3e-15   56.9   0.0   1   1   6.4e-19   2.4e-15   56.1   0.0     1    75    68   146    68   146 0.98 OB-fold nucleic acid binding domain
tRNA-synt_2d         PF01409.15   247 sp|P0A8N5|SYK2_ECOLI -            505   4.8e-06   25.9   1.6   2   3   2.5e-06    0.0094   15.1   0.1   104   173   254   324   251   378 0.84 tRNA synthetases class II core domain (F)
tRNA-synt_2d         PF01409.15   247 sp|P0A8N5|SYK2_ECOLI -            505   4.8e-06   25.9   1.6   3   3   0.00026      0.98    8.5   0.0   213   236   472   495   460   498 0.88 tRNA synthetases class II core domain (F)
tRNA-synt_2b         PF00587.20   173 sp|P0A8N5|SYK2_ECOLI -            505    0.0021   17.6   0.8   1   2   9.1e-05      0.34   10.4   0.0     2    27   187   211   186   213 0.91 tRNA synthetase class II core domain (G, H, P, S and T)
tRNA-synt_1_2        PF13603.1    185 sp|P07813|SYL_ECOLI  -            860   1.3e-79  265.8   0.0   1   1   1.1e-82     2e-79  265.1   0.0     1   184   221   403   221   404 0.98 Leucyl-tRNA synthetase, Domain 2
tRNA-synt_1          PF00133.17   601 sp|P07813|SYL_ECOLI  -            860   9.3e-71  238.5   9.1   1   5   2.3e-29   4.2e-26   91.1   0.3     4   178    16   171    13   174 0.88 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1          PF00133.17   601 sp|P07813|SYL_ECOLI  -            860   9.3e-71  238.5   9.1   2   5     1e-08   1.9e-05   22.8   0.3   361   411   174   224   170   228 0.95 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1          PF00133.17   601 sp|P07813|SYL_ECOLI  -            860   9.3e-71  238.5   9.1   3   5   3.8e-22     7e-19   67.2   0.1   188   349   230   408   225   417 0.79 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1          PF00133.17   601 sp|P07813|SYL_ECOLI  -            860   9.3e-71  238.5   9.1   4   5     2e-10   3.7e-07   28.5   0.0   414   557   417   572   411   574 0.63 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1          PF00133.17   601 sp|P07813|SYL_ECOLI  -            860   9.3e-71  238.5   9.1   5   5     6e-10   1.1e-06   26.9   0.0   560   593   618   651   608   659 0.87 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g         PF09334.6    391 sp|P07813|SYL_ECOLI  -            860   7.5e-34  117.0   0.0   1   3   9.1e-27   1.7e-23   82.9   0.0     5   218    39   224    35   240 0.83 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|P07813|SYL_ECOLI  -            860   7.5e-34  117.0   0.0   3   3   8.8e-09   1.6e-05   23.7   0.0   314   364   606   656   595   670 0.81 tRNA synthetases class I (M)
Anticodon_1          PF08264.8    153 sp|P07813|SYL_ECOLI  -            860     1e-16   61.0   0.0   1   1   9.4e-20   1.7e-16   60.3   0.0     3   148   700   821   698   827 0.79 Anticodon-binding domain of tRNA
tRNA-synt_1f         PF01921.13   360 sp|P07813|SYL_ECOLI  -            860   0.00019   20.2   0.0   1   2   0.00011       0.2   10.2   0.0     2    63    17    74    16    82 0.78 tRNA synthetases class I (K)
tRNA-synt_1e         PF01406.14   301 sp|P07813|SYL_ECOLI  -            860   0.00042   19.5   0.0   1   2    0.0004      0.74    8.8   0.0    21    48    46    73    24    75 0.77 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1d         PF00750.14   354 sp|P07813|SYL_ECOLI  -            860   0.00066   18.5   0.0   1   1   6.6e-07    0.0012   17.7   0.0    28    61    41    74    16    77 0.85 tRNA synthetases class I (R)
SymE_toxin           PF08845.5     57 sp|P39394|SYME_ECOLI -            113     4e-19   68.2   0.0   1   1     8e-23   5.9e-19   67.6   0.0     1    57    20    71    20    71 0.96 Toxin SymE, type I toxin-antitoxin system
RWD                  PF05773.17   113 sp|P39394|SYME_ECOLI -            113     0.036   13.9   0.0   1   1   5.8e-06     0.043   13.7   0.0    42    96    12    93     3   104 0.84 RWD domain
tRNA-synt_1g         PF09334.6    391 sp|P00959|SYM_ECOLI  -            677  3.6e-156  519.7   0.1   1   1  1.8e-159  4.6e-156  519.4   0.1     1   390     8   397     8   398 0.98 tRNA synthetases class I (M)
tRNA_bind            PF01588.15    95 sp|P00959|SYM_ECOLI  -            677   1.7e-22   79.0   0.0   1   1   1.5e-25   3.7e-22   77.9   0.0     1    94   581   674   581   675 0.98 Putative tRNA binding domain
tRNA-synt_1          PF00133.17   601 sp|P00959|SYM_ECOLI  -            677   3.7e-18   64.8   1.4   1   3   4.4e-15   1.1e-11   43.5   0.1    28   103    11    85     2   113 0.83 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1          PF00133.17   601 sp|P00959|SYM_ECOLI  -            677   3.7e-18   64.8   1.4   3   3   9.4e-08   0.00023   19.3   0.0   546   597   319   370   281   374 0.81 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1e         PF01406.14   301 sp|P00959|SYM_ECOLI  -            677   9.1e-14   51.2   0.4   1   2   7.5e-09   1.9e-05   23.9   0.0    14   120    12   119     2   132 0.87 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1e         PF01406.14   301 sp|P00959|SYM_ECOLI  -            677   9.1e-14   51.2   0.4   2   2   3.7e-09   9.3e-06   24.9   0.0   214   282   295   362   289   381 0.79 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1f         PF01921.13   360 sp|P00959|SYM_ECOLI  -            677   3.2e-07   29.3   0.0   2   2   1.4e-07   0.00034   19.3   0.0   266   323   317   374   310   386 0.74 tRNA synthetases class I (K)
Anticodon_1          PF08264.8    153 sp|P00959|SYM_ECOLI  -            677    0.0014   18.4   0.0   1   1   1.1e-06    0.0028   17.4   0.0     7    89   421   504   415   556 0.81 Anticodon-binding domain of tRNA
tRNA-synt_2          PF00152.15   335 sp|P0A8M0|SYN_ECOLI  -            466   2.5e-71  240.1   0.0   1   1   8.4e-75   3.1e-71  239.8   0.0     4   334   120   461   117   462 0.88 tRNA synthetases class II (D, K and N)
tRNA_anti-codon      PF01336.20    75 sp|P0A8M0|SYN_ECOLI  -            466   1.1e-12   47.6   0.1   1   1   8.1e-16     3e-12   46.2   0.1     1    74    20    99    20   100 0.95 OB-fold nucleic acid binding domain
tRNA-synt_2d         PF01409.15   247 sp|P0A8M0|SYN_ECOLI  -            466    0.0018   17.5   0.2   2   2   0.00023      0.85    8.7   0.0   211   236   429   454   421   457 0.87 tRNA synthetases class II core domain (F)
tRNA-synt_2b         PF00587.20   173 sp|P16659|SYP_ECOLI  -            572   6.9e-43  146.2   0.0   1   1   2.7e-46     1e-42  145.6   0.0     3   169    51   215    49   219 0.97 tRNA synthetase class II core domain (G, H, P, S and T)
tRNA_edit            PF04073.10   123 sp|P16659|SYP_ECOLI  -            572   2.2e-26   92.0   0.1   1   1   1.1e-29   4.2e-26   91.1   0.1     1   119   257   376   257   379 0.96 Aminoacyl-tRNA editing domain
HGTP_anticodon       PF03129.15    94 sp|P16659|SYP_ECOLI  -            572   1.3e-21   76.3   0.1   1   1   7.6e-25   2.8e-21   75.2   0.1     1    93   475   568   475   569 0.97 Anticodon binding domain
TIR_2                PF13676.1    102 sp|P16659|SYP_ECOLI  -            572     0.092   12.9   0.0   1   1   6.4e-05      0.24   11.5   0.0    10    40   490   521   484   525 0.87 TIR domain
tRNA-synt_1c         PF00749.16   314 sp|P00962|SYQ_ECOLI  -            554  1.7e-124  414.5   0.0   1   1  2.9e-128  2.2e-124  414.2   0.0     2   313    28   337    27   338 0.99 tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c_C       PF03950.13   174 sp|P00962|SYQ_ECOLI  -            554   1.7e-63  213.4   0.0   1   1   4.8e-67   3.5e-63  212.3   0.0     1   174   340   528   340   528 0.97 tRNA synthetases class I (E and Q), anti-codon binding domain
tRNA-synt_1d         PF00750.14   354 sp|P11875|SYR_ECOLI  -            577  4.9e-149  495.9   0.3   1   1  2.5e-152  6.1e-149  495.6   0.3     1   354    95   446    95   446 0.99 tRNA synthetases class I (R)
DALR_1               PF05746.10   119 sp|P11875|SYR_ECOLI  -            577   4.3e-36  123.4   0.3   2   2   9.5e-39   2.4e-35  121.0   0.3     1   119   460   577   460   577 0.98 DALR anticodon binding domain
Arg_tRNA_synt_N      PF03485.11    85 sp|P11875|SYR_ECOLI  -            577   2.7e-22   79.0   0.2   1   1   4.8e-25   1.2e-21   77.0   0.1     3    85     7    87     1    87 0.91 Arginyl tRNA synthetase N terminal domain
tRNA-synt_1e         PF01406.14   301 sp|P11875|SYR_ECOLI  -            577    0.0037   16.4   0.1   1   1   2.3e-06    0.0057   15.8   0.1    10   134   115   291   107   326 0.83 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1g         PF09334.6    391 sp|P11875|SYR_ECOLI  -            577     0.041   12.5   0.3   1   1   4.2e-05       0.1   11.2   0.2     8    43   122   157   115   202 0.82 tRNA synthetases class I (M)
Ribosomal_L20        PF00453.13   108 sp|P11875|SYR_ECOLI  -            577      0.11   12.4   0.0   1   1   9.4e-05      0.23   11.3   0.0    17    87   186   255   174   259 0.88 Ribosomal protein L20
tRNA-synt_2b         PF00587.20   173 sp|P0A8L1|SYS_ECOLI  -            430   4.5e-38  130.5   0.0   1   1   3.9e-41   6.5e-38  130.0   0.0     2   172   173   349   172   350 0.96 tRNA synthetase class II core domain (G, H, P, S and T)
Seryl_tRNA_N         PF02403.17   108 sp|P0A8L1|SYS_ECOLI  -            430   4.6e-34  116.6   3.5   1   1   4.5e-37   7.5e-34  116.0   3.5     1   108     1   107     1   107 0.99 Seryl-tRNA synthetase N-terminal domain
Filament             PF00038.16   312 sp|P0A8L1|SYS_ECOLI  -            430    0.0034   16.9   0.6   1   1   3.6e-06    0.0059   16.1   0.6    21   249    31    99    26   110 0.52 Intermediate filament protein
End3                 PF12761.2    195 sp|P0A8L1|SYS_ECOLI  -            430      0.08   12.5   0.8   1   1   8.3e-05      0.14   11.8   0.8   136   194    35    93    26    94 0.94 Actin cytoskeleton-regulatory complex protein END3
IncA                 PF04156.9    191 sp|P0A8L1|SYS_ECOLI  -            430       0.1   12.1   0.9   1   1   0.00011      0.17   11.4   0.9    82   150    29   100     8   122 0.76 IncA protein
Spc7                 PF08317.6    326 sp|P0A8L1|SYS_ECOLI  -            430      0.12   10.9   0.6   1   1   0.00012      0.19   10.3   0.6   180   247    31   104    16   113 0.89 Spc7 kinetochore protein
DUF4164              PF13747.1     89 sp|P0A8L1|SYS_ECOLI  -            430      0.26   11.4   4.7   1   1   0.00036      0.59   10.3   4.7     8    73    35   100    29   105 0.86 Domain of unknown function (DUF4164)
tRNA-synt_2b         PF00587.20   173 sp|P0A8M3|SYT_ECOLI  -            642   6.5e-48  162.5   0.2   1   1     3e-51   1.1e-47  161.7   0.2     2   165   274   435   273   440 0.93 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon       PF03129.15    94 sp|P0A8M3|SYT_ECOLI  -            642   8.6e-24   83.3   1.0   1   1   6.6e-27   2.5e-23   81.8   1.0     1    93   541   630   541   631 0.98 Anticodon binding domain
tRNA_SAD             PF07973.9     44 sp|P0A8M3|SYT_ECOLI  -            642   1.3e-14   53.8   0.0   1   1     7e-18   2.6e-14   52.8   0.0     3    44   172   219   171   219 0.97 Threonyl and Alanyl tRNA synthetase second additional domain
TGS                  PF02824.16    60 sp|P0A8M3|SYT_ECOLI  -            642   8.6e-14   51.1   0.2   1   2   5.4e-16     2e-12   46.7   0.0     3    60     4    61     2    61 0.97 TGS domain
tRNA-synt_1          PF00133.17   601 sp|P07118|SYV_ECOLI  -            951  4.4e-227  754.8   0.7   1   1  1.2e-229  2.3e-226  752.5   0.7     2   601    14   631    13   631 0.97 tRNA synthetases class I (I, L, M and V)
Anticodon_1          PF08264.8    153 sp|P07118|SYV_ECOLI  -            951   1.4e-42  144.9   0.0   1   1   1.9e-45   3.5e-42  143.7   0.0     1   151   674   824   674   826 0.90 Anticodon-binding domain of tRNA
tRNA-synt_1g         PF09334.6    391 sp|P07118|SYV_ECOLI  -            951   7.7e-19   67.6   0.2   1   4   5.8e-11   1.1e-07   30.9   0.1     5   125    39   178    35   209 0.62 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|P07118|SYV_ECOLI  -            951   7.7e-19   67.6   0.2   2   4   9.9e-07    0.0018   16.9   0.0   159   247   357   447   346   448 0.80 tRNA synthetases class I (M)
tRNA-synt_1g         PF09334.6    391 sp|P07118|SYV_ECOLI  -            951   7.7e-19   67.6   0.2   3   4   6.4e-05      0.12   11.0   0.0   323   345   550   572   491   577 0.81 tRNA synthetases class I (M)
Val_tRNA-synt_C      PF10458.4     66 sp|P07118|SYV_ECOLI  -            951   2.9e-17   62.4   7.1   1   1   3.6e-20   6.7e-17   61.3   7.1     3    61   886   944   884   949 0.95 Valyl tRNA synthetase tRNA binding arm
tRNA-synt_1_2        PF13603.1    185 sp|P07118|SYV_ECOLI  -            951   2.6e-09   36.6   0.0   2   2     7e-10   1.3e-06   27.8   0.0    86   161   247   319   243   348 0.76 Leucyl-tRNA synthetase, Domain 2
tRNA-synt_1d         PF00750.14   354 sp|P07118|SYV_ECOLI  -            951   0.00014   20.7   0.0   2   2   5.5e-05       0.1   11.3   0.0   254   307   517   572   507   596 0.72 tRNA synthetases class I (R)
tRNA-synt_1f         PF01921.13   360 sp|P07118|SYV_ECOLI  -            951     0.024   13.3   0.0   1   1   2.4e-05     0.045   12.4   0.0   267   299   537   571   527   580 0.79 tRNA synthetases class I (K)
tRNA-synt_1b         PF00579.20   292 sp|P07118|SYV_ECOLI  -            951      0.15   11.1   0.0   2   2   8.3e-05      0.15   11.1   0.0   162   209   519   564   517   572 0.73 tRNA synthetases class I (W and Y)
tRNA-synt_1b         PF00579.20   292 sp|P00954|SYW_ECOLI  -            334   1.6e-89  299.9   0.0   1   1   3.9e-93   1.9e-89  299.6   0.0     5   291     3   285     1   286 0.98 tRNA synthetases class I (W and Y)
NADH_oxidored        PF08040.6     59 sp|P00954|SYW_ECOLI  -            334     0.018   14.6   0.0   1   2   2.1e-05      0.11   12.1   0.0    19    50    91   121    77   124 0.81 MNLL subunit
DUF2267              PF10025.4    125 sp|P00954|SYW_ECOLI  -            334     0.022   14.8   0.6   2   2     2e-05     0.097   12.7   0.0    43   101   272   328   252   330 0.82 Uncharacterized conserved protein (DUF2267)
tRNA-synt_1b         PF00579.20   292 sp|P0AGJ9|SYY_ECOLI  -            424   4.5e-93  311.5   0.0   1   1   7.7e-97   5.7e-93  311.2   0.0     3   292    31   329    29   329 0.98 tRNA synthetases class I (W and Y)
S4                   PF01479.20    48 sp|P0AGJ9|SYY_ECOLI  -            424     5e-06   25.8   0.0   1   1   1.5e-09   1.1e-05   24.7   0.0     3    47   359   403   359   404 0.93 S4 domain
N6_Mtase             PF02384.11   311 sp|P08957|T1MK_ECOLI -            529   2.7e-95  319.0   0.0   1   1   1.2e-98   3.4e-95  318.6   0.0     2   310   123   449   122   450 0.97 N-6 DNA Methylase
HsdM_N               PF12161.3    137 sp|P08957|T1MK_ECOLI -            529   1.3e-11   45.0   0.0   1   1   8.3e-14   2.5e-10   40.9   0.0     1   135     6   108     6   110 0.84 HsdM N-terminal domain
Methyltransf_26      PF13659.1    117 sp|P08957|T1MK_ECOLI -            529   2.2e-08   34.1   0.1   1   1   1.8e-11   5.4e-08   32.8   0.1     3   116   170   311   168   312 0.78 Methyltransferase domain
UPF0020              PF01170.13   180 sp|P08957|T1MK_ECOLI -            529   0.00047   19.7   0.0   1   1   5.5e-07    0.0016   18.0   0.0    20   124   159   277   153   316 0.79 Putative RNA methylase family UPF0020
ResIII               PF04851.10   184 sp|P08956|T1RK_ECOLI -           1170   6.2e-33  114.1   0.1   1   1   6.7e-36   6.2e-33  114.1   0.1     2   183   443   622   442   623 0.94 Type III restriction enzyme, res subunit
HSDR_N               PF04313.9    194 sp|P08956|T1RK_ECOLI -           1170   3.4e-25   88.9   0.2   1   1   1.5e-26   1.4e-23   83.6   0.0     1   194   239   396   239   396 0.97 Type I restriction enzyme R protein N terminus (HSDR_N)
EcoEI_R_C            PF08463.5    164 sp|P08956|T1RK_ECOLI -           1170   1.6e-22   80.0   0.9   1   1   1.8e-25   1.6e-22   80.0   0.9     2   164  1003  1166  1002  1166 0.96 EcoEI R protein C-terminal
DEAD                 PF00270.24   169 sp|P08956|T1RK_ECOLI -           1170   7.1e-10   38.6   0.1   1   2   7.6e-13   7.1e-10   38.6   0.1    10   166   459   626   448   629 0.72 DEAD/DEAH box helicase
Helicase_C           PF00271.26    78 sp|P08956|T1RK_ECOLI -           1170     4e-08   33.0   1.0   1   1   7.9e-11   7.3e-08   32.1   0.1    10    76   760   829   751   831 0.84 Helicase conserved C-terminal domain
DUF4145              PF13643.1     87 sp|P08956|T1RK_ECOLI -           1170   1.8e-07   30.9   0.0   1   1   6.8e-10   6.3e-07   29.1   0.0     3    84    24   109    23   112 0.88 Domain of unknown function (DUF4145)
DUF2075              PF09848.4    352 sp|P08956|T1RK_ECOLI -           1170    0.0048   15.9   4.2   1   1   9.9e-06    0.0092   14.9   0.0    10   109   473   595   467   607 0.72 Uncharacterized conserved protein (DUF2075)
UvrD-helicase        PF00580.16   315 sp|P08956|T1RK_ECOLI -           1170    0.0058   15.9   6.0   2   2   2.5e-05     0.023   13.9   0.2     6    46   457   495   453   501 0.87 UvrD/REP helicase N-terminal domain
PhoH                 PF02562.11   205 sp|P08956|T1RK_ECOLI -           1170    0.0069   15.6   0.1   1   1   2.1e-05     0.019   14.1   0.1    17    61   457   506   446   520 0.71 PhoH-like protein
Flavi_DEAD           PF07652.9    148 sp|P08956|T1RK_ECOLI -           1170     0.053   13.2   0.0   1   1   0.00018      0.16   11.6   0.0     6   105   466   577   461   584 0.75 Flavivirus DEAD domain
PCEMA1               PF07418.6    283 sp|P08956|T1RK_ECOLI -           1170     0.089   12.1   2.1   1   1   0.00023      0.22   10.8   2.1   149   254   122   232   117   259 0.69 Acidic phosphoprotein precursor PCEMA1
DUF1462              PF07315.6     93 sp|P08956|T1RK_ECOLI -           1170      0.12   12.3   0.0   1   1   0.00059      0.55   10.2   0.0     4    73   723   793   722   808 0.78 Protein of unknown function (DUF1462)
BBP1_C               PF15272.1    196 sp|P08956|T1RK_ECOLI -           1170      0.19   11.2  10.1   1   1   0.00012      0.11   12.0   7.0    87   184   143   244   120   256 0.78 Spindle pole body component BBP1, C-terminal
SNF2_N               PF00176.18   299 sp|P08956|T1RK_ECOLI -           1170      0.84    8.3   5.6   1   1   0.00024      0.22   10.2   0.2     7   145   454   578   422   627 0.73 SNF2 family N-terminal domain
Methylase_S          PF01420.14   167 sp|P05719|T1SK_ECOLI -            464   2.2e-28   99.3   0.6   1   2   1.8e-20   2.6e-16   60.0   0.1     1   166     7   190     7   191 0.85 Type I restriction modification DNA specificity domain
Methylase_S          PF01420.14   167 sp|P05719|T1SK_ECOLI -            464   2.2e-28   99.3   0.6   2   2   1.2e-13   1.8e-09   37.7   0.0   112   165   348   403   318   405 0.85 Type I restriction modification DNA specificity domain
DUF386               PF04074.7    153 sp|P0AF96|TABA_ECOLI -            150   4.1e-52  175.7   0.0   1   1   9.2e-56   4.5e-52  175.6   0.0     1   152     1   149     1   150 0.99 Domain of unknown function (DUF386)
Cupin_2              PF07883.6     71 sp|P0AF96|TABA_ECOLI -            150   0.00096   18.6   0.1   2   2   5.5e-07    0.0027   17.1   0.0    34    65   107   138   105   145 0.87 Cupin domain
DUF1489              PF07370.6    137 sp|P0AF96|TABA_ECOLI -            150      0.12   11.8   0.0   1   1   3.7e-05      0.18   11.2   0.0    10    58     5    52     2    64 0.91 Protein of unknown function (DUF1489)
dCMP_cyt_deam_1      PF00383.17   102 sp|P68398|TADA_ECOLI -            167   1.5e-27   95.2   0.0   1   1   4.3e-31   2.1e-27   94.7   0.0     3   101     7   105     5   106 0.96 Cytidine and deoxycytidylate deaminase zinc-binding region
APOBEC_N             PF08210.6    188 sp|P68398|TADA_ECOLI -            167   1.9e-05   24.3   0.0   1   1   4.6e-09   2.3e-05   24.1   0.0    28    98    32    96     2   137 0.79 APOBEC-like N-terminal domain
Bd3614-deam          PF14439.1    136 sp|P68398|TADA_ECOLI -            167   0.00036   20.4   0.0   1   1   1.2e-07   0.00062   19.6   0.0    77    97    77    97    48   131 0.81 Bd3614-like deaminase
Transaldolase        PF00923.14   287 sp|P0A867|TALA_ECOLI -            316  3.3e-102  341.4   0.0   1   1  5.1e-106  3.8e-102  341.2   0.0     1   285    13   310    13   312 0.94 Transaldolase
DUF3292              PF11696.3    642 sp|P0A867|TALA_ECOLI -            316      0.09   10.6   0.0   1   1   1.6e-05      0.12   10.2   0.0   430   502    43   114    19   142 0.73 Protein of unknown function (DUF3292)
Transaldolase        PF00923.14   287 sp|P0A870|TALB_ECOLI -            317  4.2e-104  347.6   0.3   1   1  3.2e-108  4.8e-104  347.5   0.3     1   287    14   313    14   313 0.95 Transaldolase
Bac_surface_Ag       PF01103.18   323 sp|P0ADE4|TAMA_ECOLI -            577   1.4e-59  202.1   7.0   1   1   3.2e-63   2.4e-59  201.4   7.0     1   322   290   576   290   577 0.92 Surface antigen
Surf_Ag_VNR          PF07244.10    78 sp|P0ADE4|TAMA_ECOLI -            577   1.1e-15   57.7   0.3   2   3   5.8e-06     0.043   14.2   0.1     6    58   111   163   108   170 0.81 Surface antigen variable number repeat
Surf_Ag_VNR          PF07244.10    78 sp|P0ADE4|TAMA_ECOLI -            577   1.1e-15   57.7   0.3   3   3   9.2e-13   6.8e-09   36.0   0.0     1    67   189   249   189   263 0.83 Surface antigen variable number repeat
DUF490               PF04357.8    379 sp|P39321|TAMB_ECOLI -           1259   8.4e-80  268.6   3.7   4   5     6e-05       0.3   10.1   5.8    11   174   751   892   745   915 0.69 Family of unknown function (DUF490)
DUF490               PF04357.8    379 sp|P39321|TAMB_ECOLI -           1259   8.4e-80  268.6   3.7   5   5   1.7e-83   8.4e-80  268.6   3.7     6   379   922  1259   914  1259 0.92 Family of unknown function (DUF490)
AsmA_2               PF13502.1    220 sp|P39321|TAMB_ECOLI -           1259   1.6e-07   30.9  18.8   1   6   3.8e-05      0.19   11.0   0.1   119   214   240   333   206   347 0.66 AsmA-like C-terminal region
AsmA_2               PF13502.1    220 sp|P39321|TAMB_ECOLI -           1259   1.6e-07   30.9  18.8   2   6   8.7e-05      0.43    9.8   2.2     5   139   406   542   404   574 0.77 AsmA-like C-terminal region
AsmA_2               PF13502.1    220 sp|P39321|TAMB_ECOLI -           1259   1.6e-07   30.9  18.8   4   6   4.1e-07     0.002   17.5   0.6    10   220   694   880   685   880 0.80 AsmA-like C-terminal region
Methyltransf_23      PF13489.1    161 sp|P76145|TAM_ECOLI  -            252   1.4e-17   63.8   0.0   1   1   2.5e-20   2.2e-17   63.2   0.0     3   158    14   176    10   178 0.78 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P76145|TAM_ECOLI  -            252   3.4e-16   59.1   0.0   1   1   4.9e-19   4.3e-16   58.8   0.0     6   117    34   145    29   201 0.83 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P76145|TAM_ECOLI  -            252   2.6e-15   56.9   0.0   1   2   2.5e-17   2.1e-14   54.0   0.0     5   111    35   130    33   131 0.91 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|P76145|TAM_ECOLI  -            252   3.7e-15   56.1   0.0   1   2   4.1e-17   3.6e-14   53.0   0.0     2    94    37   127    36   128 0.95 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|P76145|TAM_ECOLI  -            252     5e-11   42.9   0.0   1   1   9.7e-14   8.5e-11   42.2   0.0     2    99    37   126    36   126 0.92 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P76145|TAM_ECOLI  -            252   1.4e-10   41.4   0.0   1   1     6e-13   5.2e-10   39.5   0.0     1   101    35   124    35   124 0.89 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P76145|TAM_ECOLI  -            252   3.9e-06   26.8   0.0   1   1   8.8e-09   7.6e-06   25.9   0.0     4   116    35   131    33   132 0.89 Methyltransferase domain
MTS                  PF05175.9    170 sp|P76145|TAM_ECOLI  -            252   1.2e-05   24.7   0.0   1   1   2.1e-08   1.9e-05   24.1   0.0    11   106    12   101    10   134 0.83 Methyltransferase small domain
Methyltransf_2       PF00891.13   242 sp|P76145|TAM_ECOLI  -            252   0.00021   20.6   0.0   1   1   3.5e-07    0.0003   20.0   0.0    92   164    22    98    10   110 0.86 O-methyltransferase
FtsJ                 PF01728.14   181 sp|P76145|TAM_ECOLI  -            252   0.00021   21.3   0.0   1   1   3.3e-07   0.00029   20.8   0.0    23    83    31    96    18   151 0.85 FtsJ-like methyltransferase
NodS                 PF05401.6    201 sp|P76145|TAM_ECOLI  -            252    0.0038   16.6   0.0   1   1   9.9e-06    0.0086   15.4   0.0    42   142    30   126    10   133 0.83 Nodulation protein S (NodS)
Methyltransf_4       PF02390.12   197 sp|P76145|TAM_ECOLI  -            252     0.015   14.3   0.0   1   1   3.6e-05     0.031   13.3   0.0    20    92    33   104    14   143 0.88 Putative methyltransferase
RrnaAD               PF00398.15   262 sp|P76145|TAM_ECOLI  -            252      0.04   12.9   0.0   1   1   6.5e-05     0.056   12.4   0.0    24    92    25    92    18   115 0.84 Ribosomal RNA adenine dimethylase
PCMT                 PF01135.14   210 sp|P76145|TAM_ECOLI  -            252      0.06   12.8   0.0   1   1   9.8e-05     0.086   12.3   0.0    66   119    21    76    13   115 0.79 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_19      PF04672.7    268 sp|P76145|TAM_ECOLI  -            252      0.12   11.6   0.0   1   1   0.00019      0.17   11.1   0.0    75   137    37    91     5   100 0.81 S-adenosyl methyltransferase
Methyltransf_32      PF13679.1    141 sp|P76145|TAM_ECOLI  -            252      0.13   11.8   0.0   1   1   0.00018      0.16   11.6   0.0    25    77    31    79    19   164 0.87 Methyltransferase domain
Sigma70_r4           PF04545.11    50 sp|P76145|TAM_ECOLI  -            252      0.13   11.5   0.3   1   1   0.00028      0.24   10.7   0.3     1    30   205   238   205   238 0.91 Sigma-70, region 4
Aldo_ket_red         PF00248.16   283 sp|P0A9T4|TAS_ECOLI  -            346   2.2e-75  253.1   0.0   1   1   3.3e-79   2.5e-75  252.9   0.0     2   281    16   337    15   339 0.95 Aldo/keto reductase family
HTH_Tnp_1            PF01527.15    76 sp|P0A9T4|TAS_ECOLI  -            346     0.054   13.4   0.0   1   1   1.7e-05      0.13   12.2   0.0     3    40   261   291   260   293 0.89 Transposase
MttA_Hcf106          PF02416.11    53 sp|P69428|TATA_ECOLI -             89   7.5e-16   56.9   0.6   1   1   2.4e-19   1.2e-15   56.3   0.6     1    52     4    55     4    83 0.90 mttA/Hcf106 family
DUF1510              PF07423.6    217 sp|P69428|TATA_ECOLI -             89   0.00032   20.1   0.6   1   1   7.6e-08   0.00038   19.9   0.6    20   104     4    86     2    89 0.48 Protein of unknown function (DUF1510)
DUF1980              PF09323.5    182 sp|P69428|TATA_ECOLI -             89      0.02   14.6   0.2   1   1   4.5e-06     0.022   14.5   0.2    79   151     9    79     4    89 0.51 Domain of unknown function (DUF1980)
MttA_Hcf106          PF02416.11    53 sp|P69425|TATB_ECOLI -            171     0.011   14.8   5.4   1   1   4.4e-06     0.033   13.3   5.1     1    30     4    33     4   106 0.84 mttA/Hcf106 family
GspL_C               PF12693.2    158 sp|P69425|TATB_ECOLI -            171     0.023   14.4   0.1   1   1   4.5e-06     0.033   13.9   0.1    18    82    42   106    28   123 0.84 GspL periplasmic domain
TatC                 PF00902.13   215 sp|P69423|TATC_ECOLI -            258   3.2e-68  229.3  21.2   1   1   9.3e-72   4.6e-68  228.8  21.2     2   215    11   221    10   221 0.99 Sec-independent protein translocase protein (TatC)
SKG6                 PF08693.5     40 sp|P69423|TATC_ECOLI -            258       1.6    8.0   6.8   1   2   6.7e-05      0.33   10.2   2.1    24    37    24    37    22    39 0.94 Transmembrane alpha-helix domain
TatD_DNase           PF01026.16   255 sp|P27859|TATD_ECOLI -            260   4.2e-68  229.3   0.0   1   1   9.5e-72   4.7e-68  229.1   0.0     1   255     2   257     2   257 0.98 TatD related DNase
DRTGG                PF07085.7    105 sp|P27859|TATD_ECOLI -            260    0.0065   16.0   0.2   1   1   4.4e-06     0.022   14.3   0.0    48    83    15    51    13    55 0.85 DRTGG domain
Amidohydro_2         PF04909.9    273 sp|P27859|TATD_ECOLI -            260    0.0074   15.8   0.2   1   1   2.8e-06     0.014   14.9   0.1    99   239    91   210    62   231 0.77 Amidohydrolase
MttA_Hcf106          PF02416.11    53 sp|P0A843|TATE_ECOLI -             67   1.8e-12   46.1   0.4   1   1   1.4e-16     2e-12   46.0   0.4     1    48     4    51     4    62 0.92 mttA/Hcf106 family
OpuAC                PF04069.7    257 sp|Q47537|TAUA_ECOLI -            320   2.1e-27   96.1   2.0   1   1   9.9e-31   2.9e-27   95.6   2.0     2   248    24   247    23   252 0.86 Substrate binding domain of ABC-type glycine betaine transport system
NMT1_2               PF13379.1    252 sp|Q47537|TAUA_ECOLI -            320   9.2e-25   87.4   2.1   1   1   4.7e-28   1.4e-24   86.8   2.1     7   236    22   235    18   249 0.86 NMT1-like family
NMT1                 PF09084.6    216 sp|Q47537|TAUA_ECOLI -            320   7.9e-20   71.3   0.1   1   1   3.6e-23   1.1e-19   70.9   0.1    14   214    44   240    30   241 0.87 NMT1/THI5 like
Phosphonate-bd       PF12974.2    243 sp|Q47537|TAUA_ECOLI -            320   1.3e-09   37.8   0.2   1   1   6.4e-13   1.9e-09   37.2   0.2    23   214    45   225    27   251 0.78 ABC transporter, phosphonate, periplasmic substrate-binding protein
SBP_bac_3            PF00497.15   225 sp|Q47537|TAUA_ECOLI -            320   3.2e-05   23.3   0.0   2   3   1.4e-06    0.0043   16.3   0.0    32   172    45   189    38   226 0.69 Bacterial extracellular solute-binding proteins, family 3
ABC_tran             PF00005.22   137 sp|Q47538|TAUB_ECOLI -            255   9.1e-33  113.4   0.0   1   1   2.4e-35   1.3e-32  112.9   0.0     1   136    17   156    17   157 0.94 ABC transporter
AAA_21               PF13304.1    303 sp|Q47538|TAUB_ECOLI -            255   4.8e-09   36.5   0.0   1   2   9.6e-05     0.051   13.5   0.1     2    22    30    50    29    82 0.77 AAA domain
AAA_21               PF13304.1    303 sp|Q47538|TAUB_ECOLI -            255   4.8e-09   36.5   0.0   2   2     4e-07   0.00021   21.3   0.0   191   298   102   188    73   191 0.80 AAA domain
AAA_16               PF13191.1    185 sp|Q47538|TAUB_ECOLI -            255   6.6e-06   26.2   2.0   1   1     1e-07   5.3e-05   23.2   2.0     9   162    17   192    11   217 0.52 AAA ATPase domain
Arch_ATPase          PF01637.13   234 sp|Q47538|TAUB_ECOLI -            255     5e-05   23.1   0.1   1   1   9.2e-07   0.00049   19.8   0.0     7    40    16    47    14    53 0.89 Archaeal ATPase
AAA_22               PF13401.1    131 sp|Q47538|TAUB_ECOLI -            255   5.5e-05   23.3   0.6   1   1     9e-07   0.00048   20.2   0.6     3   123    26   186    24   193 0.71 AAA domain
AAA_19               PF13245.1     76 sp|Q47538|TAUB_ECOLI -            255   7.6e-05   22.3   0.2   1   1   6.5e-07   0.00034   20.2   0.1    10    48    27    61    20    69 0.77 Part of AAA domain
DUF258               PF03193.11   161 sp|Q47538|TAUB_ECOLI -            255   0.00012   21.3   0.0   1   1   3.6e-07   0.00019   20.6   0.0    23    66    14    58     2    67 0.81 Protein of unknown function, DUF258
AAA_28               PF13521.1    163 sp|Q47538|TAUB_ECOLI -            255    0.0004   20.3   0.0   1   2   7.9e-05     0.042   13.8   0.0     3    20    31    48    29   115 0.77 AAA domain
AAA                  PF00004.24   132 sp|Q47538|TAUB_ECOLI -            255   0.00089   19.4   0.0   1   1     8e-06    0.0042   17.2   0.0     2    93    31   175    30   198 0.59 ATPase family associated with various cellular activities (AAA)
SMC_N                PF02463.14   220 sp|Q47538|TAUB_ECOLI -            255    0.0012   18.1   0.1   2   2   0.00034      0.18   11.0   0.1   126   199   112   189    77   204 0.75 RecF/RecN/SMC N terminal domain
ABC_ATPase           PF09818.4    448 sp|Q47538|TAUB_ECOLI -            255    0.0025   16.4   0.0   2   2   0.00017     0.088   11.3   0.0   322   373   128   179   116   211 0.83 Predicted ATPase of the ABC class
SbcCD_C              PF13558.1     90 sp|Q47538|TAUB_ECOLI -            255    0.0026   17.6   0.3   1   1     4e-05     0.021   14.7   0.3    51    88   140   171   100   173 0.72 Putative exonuclease SbcCD, C subunit
AAA_10               PF12846.2    304 sp|Q47538|TAUB_ECOLI -            255    0.0031   17.0   0.2   1   2   4.8e-05     0.025   14.0   0.1     4    22    30    48    27    58 0.89 AAA-like domain
NACHT                PF05729.7    166 sp|Q47538|TAUB_ECOLI -            255     0.005   16.4   0.6   1   2   5.8e-05     0.031   13.9   0.1     2    21    29    48    28    50 0.89 NACHT domain
AAA_33               PF13671.1    143 sp|Q47538|TAUB_ECOLI -            255     0.008   16.0   0.0   1   1   4.9e-05     0.026   14.3   0.0     1    39    29    67    29   197 0.53 AAA domain
AAA_30               PF13604.1    196 sp|Q47538|TAUB_ECOLI -            255    0.0091   15.5   0.0   1   1   0.00013     0.069   12.7   0.0    13    45    23    54    17    67 0.76 AAA domain
AAA_17               PF13207.1    121 sp|Q47538|TAUB_ECOLI -            255     0.012   16.4   0.1   1   1   3.2e-05     0.017   15.9   0.1     3    22    31    50    29   212 0.82 AAA domain
Rad17                PF03215.10   519 sp|Q47538|TAUB_ECOLI -            255     0.013   14.1   0.0   1   1   3.5e-05     0.019   13.6   0.0    43    66    25    48    14    58 0.79 Rad17 cell cycle checkpoint protein
AAA_25               PF13481.1    194 sp|Q47538|TAUB_ECOLI -            255     0.014   14.7   0.0   1   1   5.1e-05     0.027   13.8   0.0    30    57    24    51    13    91 0.75 AAA domain
T2SE                 PF00437.15   272 sp|Q47538|TAUB_ECOLI -            255     0.015   14.2   0.0   1   1   4.4e-05     0.023   13.5   0.0   122   157    21    56     4    66 0.81 Type II/IV secretion system protein
AAA_23               PF13476.1    202 sp|Q47538|TAUB_ECOLI -            255     0.019   15.2   0.0   1   1     6e-05     0.032   14.5   0.0    12    39    19    47    13    54 0.80 AAA domain
AAA_14               PF13173.1    128 sp|Q47538|TAUB_ECOLI -            255     0.025   14.4   0.1   1   1   0.00014     0.074   12.9   0.0     3    23    28    48    26    65 0.86 AAA domain
PduV-EutP            PF10662.4    143 sp|Q47538|TAUB_ECOLI -            255     0.048   13.1   0.1   1   1   0.00045      0.24   10.9   0.0     4    23    30    49    28    70 0.72 Ethanolamine utilisation - propanediol utilisation
AAA_29               PF13555.1     62 sp|Q47538|TAUB_ECOLI -            255     0.084   12.4   0.0   1   1   0.00034      0.18   11.3   0.0    22    40    26    44    17    56 0.82 P-loop containing region of AAA domain
AAA_5                PF07728.9    139 sp|Q47538|TAUB_ECOLI -            255      0.12   12.1   0.1   1   1    0.0005      0.26   10.9   0.1     2    23    30    51    29    61 0.84 AAA domain (dynein-related subfamily)
AAA_24               PF13479.1    213 sp|Q47538|TAUB_ECOLI -            255      0.19   11.3   0.2   1   1   0.00099      0.53    9.8   0.1     7    21    31    45    28    50 0.89 AAA domain
RNA_helicase         PF00910.17   107 sp|Q47538|TAUB_ECOLI -            255      0.19   11.9   0.0   1   1   0.00068      0.36   11.0   0.0     2    19    31    48    30    62 0.87 RNA helicase
BPD_transp_1         PF00528.17   185 sp|Q47539|TAUC_ECOLI -            275   5.7e-23   81.3  16.5   2   2   3.8e-27   5.7e-23   81.3  16.5     1   181    98   269    98   271 0.97 Binding-protein-dependent transport system inner membrane component
TauD                 PF02668.11   258 sp|P37610|TAUD_ECOLI -            283   1.8e-62  211.3   1.5   1   1   1.4e-66     2e-62  211.1   1.5     2   258     7   272     6   272 0.91 Taurine catabolism dioxygenase TauD, TfdA family
ThiF                 PF00899.16   136 sp|Q46927|TCDA_ECOLI -            268   4.4e-41  139.8   0.5   1   1   4.5e-44   6.7e-41  139.2   0.5     2   128    30   157    29   164 0.96 ThiF family
DAO                  PF01266.19   358 sp|Q46927|TCDA_ECOLI -            268   5.2e-05   22.3   0.5   1   1   1.5e-07   0.00022   20.2   0.5     1    49    32    81    32   236 0.86 FAD dependent oxidoreductase
NAD_binding_7        PF13241.1    103 sp|Q46927|TCDA_ECOLI -            268     0.001   19.3   0.2   1   1   2.1e-06    0.0032   17.7   0.2     6    88    29   149    25   155 0.67 Putative NAD(P)-binding
UDPG_MGDP_dh_N       PF03721.9    185 sp|Q46927|TCDA_ECOLI -            268    0.0059   15.9   1.1   1   1     8e-06     0.012   15.0   1.1     2    47    32    78    31   137 0.75 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
Saccharop_dh         PF03435.13   386 sp|Q46927|TCDA_ECOLI -            268     0.006   15.6   0.7   1   1   7.7e-06     0.011   14.6   0.6     1    98    33   153    33   183 0.85 Saccharopine dehydrogenase
3HCDH_N              PF02737.13   180 sp|Q46927|TCDA_ECOLI -            268     0.007   16.0   0.1   1   1   7.2e-06     0.011   15.4   0.1     1    68    32    97    32   140 0.79 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
ELFV_dehydrog        PF00208.16   244 sp|Q46927|TCDA_ECOLI -            268     0.014   15.0   0.1   1   1   2.2e-05     0.033   13.7   0.0    26    81    24    79    14   124 0.82 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ApbA                 PF02558.11   151 sp|Q46927|TCDA_ECOLI -            268     0.076   12.4   0.1   1   1   8.9e-05      0.13   11.6   0.1     1    34    33    68    33   105 0.76 Ketopantoate reductase PanE/ApbA
HHH_5                PF14520.1     60 sp|Q46927|TCDA_ECOLI -            268      0.11   12.6   0.0   1   1   0.00024      0.35   11.0   0.0    10    28    38    70    25   137 0.64 Helix-hairpin-helix domain
Shikimate_DH         PF01488.15   135 sp|Q46927|TCDA_ECOLI -            268      0.12   12.5   0.5   1   1   0.00017      0.26   11.3   0.3     6    42    24    60    21    63 0.88 Shikimate / quinate 5-dehydrogenase
PALP                 PF00291.20   306 sp|P0AGF6|TDCB_ECOLI -            329   9.7e-73  245.0   0.4   1   1   1.5e-76   1.1e-72  244.8   0.4    12   306    32   312    21   312 0.91 Pyridoxal-phosphate dependent enzyme
HTH_9                PF08221.6     62 sp|P0AGF6|TDCB_ECOLI -            329     0.038   13.8   0.0   1   1   9.9e-06     0.074   12.9   0.0    30    56   251   278   244   280 0.90 RNA polymerase III subunit RPC82 helix-turn-helix domain
Acetate_kinase       PF00871.12   388 sp|P11868|TDCD_ECOLI -            402  1.7e-163  543.6   0.1   1   1  1.3e-167  1.9e-163  543.5   0.1     2   387     7   386     6   387 0.98 Acetokinase family
Trp_Tyr_perm         PF03222.8    394 sp|P0AAD8|TDCC_ECOLI -            443   2.1e-08   33.3  29.3   1   1   7.8e-12   2.9e-08   32.9  29.3    13   391    29   438    22   441 0.76 Tryptophan/tyrosine permease family
Zw10                 PF06248.8    593 sp|P0AAD8|TDCC_ECOLI -            443      0.16   10.0   0.0   1   1   6.1e-05      0.23    9.5   0.0   369   395   237   263   226   268 0.89 Centromere/kinetochore Zw10
QCR10                PF09796.4     64 sp|P0AAD8|TDCC_ECOLI -            443       0.6    9.8   4.3   1   2   0.00011      0.43   10.2   0.1    13    31    22    40    12    42 0.89 Ubiquinol-cytochrome-c reductase complex subunit (QCR10)
SDH_alpha            PF03313.10   283 sp|P42630|TDCG_ECOLI -            454  4.4e-106  354.0   5.2   1   1  1.1e-109  5.6e-106  353.7   5.2     3   282   184   449   182   450 0.97 Serine dehydratase alpha chain
SDH_beta             PF03315.10   158 sp|P42630|TDCG_ECOLI -            454   6.1e-54  182.3   0.0   1   1     2e-57     1e-53  181.6   0.0     1   156     3   157     3   159 0.96 Serine dehydratase beta chain
MmgE_PrpD            PF03972.9    445 sp|P42630|TDCG_ECOLI -            454    0.0032   15.7   1.5   1   1   9.4e-07    0.0046   15.1   1.5   104   231   291   423   284   443 0.75 MmgE/PrpD family
Ribonuc_L-PSP        PF01042.16   121 sp|P0AGL2|TDCF_ECOLI -            129   2.7e-45  153.0   0.1   1   1   4.1e-49     3e-45  152.8   0.1     1   120     7   126     7   127 0.98 Endoribonuclease L-PSP
DUF3857              PF12969.2    177 sp|P0AGL2|TDCF_ECOLI -            129    0.0026   17.3   0.0   1   1   4.4e-07    0.0033   17.0   0.0    74   144    50   123    38   128 0.84 Domain of Unknown Function with PDB structure (DUF3857)
ADH_N                PF08240.7    109 sp|P07913|TDH_ECOLI  -            341   1.1e-31  108.8   2.4   1   1     8e-35   1.1e-31  108.8   2.4     2   108    26   134    25   135 0.95 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N           PF00107.21   130 sp|P07913|TDH_ECOLI  -            341   3.5e-27   94.5   0.1   1   1   3.7e-30     5e-27   93.9   0.1     1   128   174   301   174   304 0.95 Zinc-binding dehydrogenase
ADH_zinc_N_2         PF13602.1    127 sp|P07913|TDH_ECOLI  -            341    0.0001   23.1   0.0   1   1   2.5e-07   0.00034   21.5   0.0    14   127   223   338   207   338 0.72 Zinc-binding dehydrogenase
AlaDh_PNT_C          PF01262.16   168 sp|P07913|TDH_ECOLI  -            341    0.0053   16.3   0.3   1   1   7.2e-06    0.0097   15.4   0.3    23    69   167   214   164   234 0.85 Alanine dehydrogenase/PNT, C-terminal domain
HI0933_like          PF03486.9    409 sp|P07913|TDH_ECOLI  -            341    0.0076   14.7   0.2   1   1   7.4e-06      0.01   14.3   0.2     2    32   166   197   165   222 0.76 HI0933-like protein
FAD_binding_2        PF00890.19   417 sp|P07913|TDH_ECOLI  -            341    0.0078   15.1   0.3   1   1   7.6e-06      0.01   14.7   0.3     1    88   166   252   166   261 0.81 FAD binding domain
FAD_binding_3        PF01494.14   356 sp|P07913|TDH_ECOLI  -            341    0.0095   15.0   0.2   1   1   1.2e-05     0.016   14.3   0.2     3    34   166   197   165   235 0.89 FAD binding domain
MTS                  PF05175.9    170 sp|P07913|TDH_ECOLI  -            341     0.035   13.4   0.0   1   1     4e-05     0.054   12.8   0.0    38   100   170   234   156   247 0.79 Methyltransferase small domain
FAD_oxidored         PF12831.2    428 sp|P07913|TDH_ECOLI  -            341     0.059   12.4   1.8   1   1   6.1e-05     0.082   11.9   1.8     1    29   166   194   166   198 0.90 FAD dependent oxidoreductase
ELFV_dehydrog        PF00208.16   244 sp|P07913|TDH_ECOLI  -            341     0.083   12.4   0.1   1   1     9e-05      0.12   11.9   0.1    25    65   158   197   150   226 0.85 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Methyltransf_11      PF08241.7     95 sp|P07913|TDH_ECOLI  -            341      0.12   12.9   0.0   1   1   0.00017      0.22   12.0   0.0     4    53   171   222   168   236 0.86 Methyltransferase domain
SLAC1                PF03595.12   330 sp|P25396|TEHA_ECOLI -            330   9.9e-55  185.4  37.2   1   1   1.5e-58   1.1e-54  185.3  37.2     2   329     8   306     7   307 0.97 Voltage-dependent anion channel
FHIPEP               PF00771.15   658 sp|P25396|TEHA_ECOLI -            330     0.089   11.1   0.3   1   1   1.7e-05      0.13   10.5   0.3   191   299    15   124     8   142 0.80 FHIPEP family
TehB                 PF03848.9    192 sp|P25397|TEHB_ECOLI -            197  5.5e-103  342.0   0.1   1   1  5.4e-106  6.1e-103  341.9   0.1     1   192     1   193     1   193 0.99 Tellurite resistance protein TehB
Methyltransf_23      PF13489.1    161 sp|P25397|TEHB_ECOLI -            197     5e-13   49.0   0.0   1   1   5.3e-16   6.1e-13   48.8   0.0    20   114    28   133    10   173 0.77 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|P25397|TEHB_ECOLI -            197   2.2e-12   47.3   0.0   1   1   3.9e-15   4.5e-12   46.3   0.0     1    93    35   130    35   132 0.96 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|P25397|TEHB_ECOLI -            197   2.3e-11   44.0   0.0   1   1   3.2e-14   3.7e-11   43.3   0.0     1    98    35   129    35   130 0.95 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P25397|TEHB_ECOLI -            197   8.7e-11   41.6   0.0   1   1   9.1e-14     1e-10   41.3   0.0     5   110    32   134    29   183 0.89 Methyltransferase domain
MTS                  PF05175.9    170 sp|P25397|TEHB_ECOLI -            197   4.9e-10   39.0   0.0   1   1   5.7e-13   6.5e-10   38.6   0.0    23   141    22   135     4   152 0.86 Methyltransferase small domain
Methyltransf_18      PF12847.2    112 sp|P25397|TEHB_ECOLI -            197   1.4e-08   35.2   0.0   1   1     2e-11   2.3e-08   34.5   0.0     2   109    31   132    30   135 0.79 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P25397|TEHB_ECOLI -            197   2.7e-05   24.4   0.0   1   1   3.9e-08   4.5e-05   23.7   0.0     2   101    35   128    34   128 0.89 Methyltransferase domain
TPMT                 PF05724.6    218 sp|P25397|TEHB_ECOLI -            197   0.00017   21.0   0.0   1   1   4.1e-07   0.00046   19.6   0.0    28   194    21   175    11   192 0.75 Thiopurine S-methyltransferase (TPMT)
Methyltransf_26      PF13659.1    117 sp|P25397|TEHB_ECOLI -            197   0.00023   21.1   0.0   1   1   3.2e-07   0.00036   20.5   0.0     2   110    32   129    31   135 0.87 Methyltransferase domain
NodS                 PF05401.6    201 sp|P25397|TEHB_ECOLI -            197   0.00024   20.5   0.0   1   1   2.9e-07   0.00033   20.1   0.0    25   149    12   137     6   143 0.81 Nodulation protein S (NodS)
CMAS                 PF02353.15   273 sp|P25397|TEHB_ECOLI -            197     0.001   18.2   0.0   1   1   1.1e-06    0.0013   17.8   0.0    60   166    29   134    11   145 0.78 Mycolic acid cyclopropane synthetase
CheR                 PF01739.13   196 sp|P25397|TEHB_ECOLI -            197     0.099   11.9   0.0   2   2   0.00068      0.78    8.9   0.0   125   171    85   130    66   140 0.86 CheR methyltransferase, SAM binding domain
Lipase_GDSL_2        PF13472.1    179 sp|P0ADA1|TESA_ECOLI -            208   1.7e-28   99.9   0.0   1   1   4.6e-32   2.3e-28   99.5   0.0     1   175    31   188    31   191 0.89 GDSL-like Lipase/Acylhydrolase family
Lipase_GDSL          PF00657.17   234 sp|P0ADA1|TESA_ECOLI -            208   7.7e-22   78.2   0.0   1   1   1.8e-25   9.1e-22   78.0   0.0     2   233    31   195    30   196 0.90 GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_3        PF14606.1    178 sp|P0ADA1|TESA_ECOLI -            208    0.0074   16.0   0.0   1   1   7.7e-06     0.038   13.7   0.0     5   176    31   199    28   201 0.74 GDSL-like Lipase/Acylhydrolase family
Acyl_CoA_thio        PF02551.10   132 sp|P0AGG2|TESB_ECOLI -            286   9.8e-69  229.0   0.0   1   2   4.6e-17   2.3e-13   49.9   0.0     5   126    21   103    17   115 0.89 Acyl-CoA thioesterase
Acyl_CoA_thio        PF02551.10   132 sp|P0AGG2|TESB_ECOLI -            286   9.8e-69  229.0   0.0   2   2   4.8e-55   2.4e-51  172.8   0.0     2   132   148   281   147   281 0.99 Acyl-CoA thioesterase
4HBT_3               PF13622.1    255 sp|P0AGG2|TESB_ECOLI -            286   1.4e-39  136.3   0.1   1   1   3.5e-43   1.8e-39  136.0   0.1    10   254    32   281    25   282 0.84 Thioesterase-like superfamily
4HBT                 PF03061.17    79 sp|P0AGG2|TESB_ECOLI -            286    0.0055   16.7   0.0   2   2   8.3e-06     0.041   13.9   0.0    27    79   218   274   209   274 0.89 Thioesterase superfamily
Caudo_TAP            PF02413.12   130 sp|P09153|TFAE_ECOLI -            200   2.6e-30  105.2   2.1   1   1   2.5e-34   3.7e-30  104.7   2.1     1   130    78   199    78   199 0.97 Caudovirales tail fibre assembly protein
Caudo_TAP            PF02413.12   130 sp|P76155|TFAQ_ECOLI -            191   8.1e-38  129.5   0.7   1   1   1.4e-41     1e-37  129.1   0.7     1   129    72   191    72   191 0.98 Caudovirales tail fibre assembly protein
Imm39                PF15600.1    187 sp|P76155|TFAQ_ECOLI -            191      0.15   11.9   0.1   1   1     3e-05      0.22   11.3   0.1    78   130   118   170   110   173 0.90 Immunity protein 39
Caudo_TAP            PF02413.12   130 sp|P77163|TFAR_ECOLI -            191   3.7e-38  130.6   0.6   1   1   6.3e-42   4.7e-38  130.3   0.6     1   129    72   191    72   191 0.98 Caudovirales tail fibre assembly protein
Imm39                PF15600.1    187 sp|P77163|TFAR_ECOLI -            191      0.15   11.9   0.1   1   1     3e-05      0.22   11.3   0.1    78   130   118   170   110   173 0.90 Immunity protein 39
Caudo_TAP            PF02413.12   130 sp|P77087|TFAX_ECOLI -             61     2e-08   34.4   0.1   1   1   1.4e-12   2.1e-08   34.3   0.1    69   104    26    61     4    61 0.85 Caudovirales tail fibre assembly protein
Caudo_TAP            PF02413.12   130 sp|P77699|TFAD_ECOLI -            247   2.4e-39  134.4   0.5   1   1     7e-43   3.5e-39  133.9   0.5     1   129   125   244   125   245 0.97 Caudovirales tail fibre assembly protein
Terminase_GpA        PF05876.7    557 sp|P77699|TFAD_ECOLI -            247   1.7e-16   59.7   0.0   1   1   5.5e-20   2.7e-16   59.0   0.0     1    67    39   103    39   110 0.97 Phage terminase large subunit (GpA)
TM140                PF14985.1    181 sp|P77699|TFAD_ECOLI -            247     0.057   13.1   0.0   1   1   1.7e-05     0.086   12.5   0.0    63   132    69   141    58   144 0.82 TM140 protein family
Caudo_TAP            PF02413.12   130 sp|P77326|TFAS_ECOLI -            114   1.2e-23   83.7   0.4   1   1   8.9e-28   1.3e-23   83.5   0.4    36   130    18   113     6   113 0.94 Caudovirales tail fibre assembly protein
TGT                  PF01702.13   238 sp|P0A847|TGT_ECOLI  -            375  2.9e-105  350.8   0.0   1   1  2.4e-109  3.5e-105  350.5   0.0     1   237   125   362   125   363 0.99 Queuine tRNA-ribosyltransferase
Hexapep              PF00132.19    36 sp|P07464|THGA_ECOLI -            203   3.9e-17   60.8  15.4   2   3   2.3e-06     0.011   15.1   0.5    20    34    96   110    75   111 0.76 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P07464|THGA_ECOLI -            203   3.9e-17   60.8  15.4   3   3   3.8e-15   1.9e-11   42.9   8.5     2    36   132   166   131   166 0.95 Bacterial transferase hexapeptide (six repeats)
Mac                  PF12464.3     55 sp|P07464|THGA_ECOLI -            203     4e-14   52.3   0.1   1   1   1.5e-17   7.5e-14   51.4   0.1     2    55     7    60     6    60 0.98 Maltose acetyltransferase
Hexapep_2            PF14602.1     34 sp|P07464|THGA_ECOLI -            203   2.7e-11   42.8  17.7   3   4   4.7e-05      0.23   11.0   0.2    18    32    96   110    91   112 0.89 Hexapeptide repeat of succinyl-transferase
Hexapep_2            PF14602.1     34 sp|P07464|THGA_ECOLI -            203   2.7e-11   42.8  17.7   4   4   3.8e-14   1.9e-10   40.1   4.4     1    34   131   166   131   166 0.98 Hexapeptide repeat of succinyl-transferase
SBP_bac_6            PF13343.1    242 sp|P31550|THIB_ECOLI -            327   2.4e-17   63.0   3.3   1   1   6.2e-21   3.1e-17   62.7   3.3     1   217    73   288    73   313 0.76 Bacterial extracellular solute-binding protein
SBP_bac_1            PF01547.20   315 sp|P31550|THIB_ECOLI -            327   1.7e-16   60.8   6.5   1   1   5.2e-20   2.6e-16   60.2   6.5    14   314    40   272    32   273 0.84 Bacterial extracellular solute-binding protein
SBP_bac_11           PF13531.1    230 sp|P31550|THIB_ECOLI -            327   9.7e-16   58.0   0.2   1   1   2.6e-19   1.3e-15   57.6   0.2    17   223    41   274    22   277 0.83 Bacterial extracellular solute-binding protein
ThiC                 PF01964.13   421 sp|P30136|THIC_ECOLI -            631  4.1e-201  667.9   0.0   1   1  2.8e-204  2.1e-200  665.6   0.0     1   420   148   597   148   598 0.99 ThiC family
ThiC-associated      PF13667.1     80 sp|P30136|THIC_ECOLI -            631     8e-34  115.0   0.1   1   1   2.9e-37   2.2e-33  113.6   0.0     2    80    26   109    25   109 0.94 ThiC-associated domain
Phos_pyr_kin         PF08543.7    246 sp|P76422|THID_ECOLI -            266     4e-95  317.6   0.0   1   1   6.1e-99   4.5e-95  317.5   0.0     1   246    13   260    13   260 0.98 Phosphomethylpyrimidine kinase
PfkB                 PF00294.19   301 sp|P76422|THID_ECOLI -            266   2.1e-07   30.4   0.0   1   1   3.3e-11   2.4e-07   30.1   0.0   136   282    80   237    39   251 0.84 pfkB family carbohydrate kinase
TMP-TENI             PF02581.12   180 sp|P30137|THIE_ECOLI -            211   6.4e-57  191.5   0.4   1   1     1e-60   7.6e-57  191.3   0.4     3   180    17   189    15   189 0.98 Thiamine monophosphate synthase/TENI
Ribul_P_3_epim       PF00834.14   201 sp|P30137|THIE_ECOLI -            211     0.058   12.5   0.0   1   1   1.2e-05     0.091   11.8   0.0    79   199    76   191    62   193 0.82 Ribulose-phosphate 3 epimerase family
ThiF                 PF00899.16   136 sp|P30138|THIF_ECOLI -            251   8.8e-44  148.6   0.1   1   1   8.3e-47   1.2e-43  148.1   0.1     2   134    28   159    27   161 0.98 ThiF family
MoeZ_MoeB            PF05237.8     84 sp|P30138|THIF_ECOLI -            251   3.9e-29  100.0   0.0   1   1   4.7e-32     7e-29   99.2   0.0     4    82   168   245   166   247 0.96 MoeZ/MoeB domain
NAD_binding_7        PF13241.1    103 sp|P30138|THIF_ECOLI -            251   0.00026   21.2   0.0   1   1   3.2e-07   0.00048   20.3   0.0     6    91    27   149    24   152 0.69 Putative NAD(P)-binding
Saccharop_dh         PF03435.13   386 sp|P30138|THIF_ECOLI -            251   0.00032   19.8   0.0   1   1   2.9e-07   0.00042   19.4   0.0     1    99    31   151    31   196 0.86 Saccharopine dehydrogenase
3HCDH_N              PF02737.13   180 sp|P30138|THIF_ECOLI -            251     0.019   14.6   0.0   1   1   2.1e-05     0.032   13.9   0.0     1   102    30   141    30   151 0.70 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
ApbA                 PF02558.11   151 sp|P30138|THIF_ECOLI -            251     0.032   13.6   0.1   1   1   3.2e-05     0.047   13.1   0.1     1    84    31   135    31   148 0.66 Ketopantoate reductase PanE/ApbA
Shikimate_DH         PF01488.15   135 sp|P30138|THIF_ECOLI -            251     0.036   14.1   0.1   1   1   6.8e-05       0.1   12.7   0.1     8    56    24    72    17   140 0.74 Shikimate / quinate 5-dehydrogenase
UDPG_MGDP_dh_N       PF03721.9    185 sp|P30138|THIF_ECOLI -            251     0.065   12.6   0.0   1   1   9.6e-05      0.14   11.4   0.0     2    48    30    77    29   148 0.90 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
2-Hacid_dh_C         PF02826.14   178 sp|P30138|THIF_ECOLI -            251     0.089   11.9   0.1   1   2   0.00049      0.72    8.9   0.0    31    66    23    58     4    79 0.81 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
FAD_binding_3        PF01494.14   356 sp|P30138|THIF_ECOLI -            251      0.13   11.2   0.2   1   1   0.00013       0.2   10.7   0.2     2    31    29    58    28    71 0.90 FAD binding domain
ThiG                 PF05690.9    247 sp|P30139|THIG_ECOLI -            256  1.5e-109  364.8   1.2   1   1  7.9e-113  1.7e-109  364.6   1.2     2   247     4   247     3   247 0.99 Thiazole biosynthesis protein ThiG
His_biosynth         PF00977.16   229 sp|P30139|THIG_ECOLI -            256   2.5e-05   23.6   0.1   1   1   2.7e-08   5.8e-05   22.4   0.1    60   106   162   208   146   226 0.85 Histidine biosynthesis protein
FMN_dh               PF01070.13   357 sp|P30139|THIG_ECOLI -            256    0.0025   16.7   0.5   1   1   2.1e-06    0.0044   15.9   0.5   270   313   167   208   157   212 0.80 FMN-dependent dehydrogenase
IMPDH                PF00478.20   352 sp|P30139|THIG_ECOLI -            256     0.003   16.5   0.4   1   1   2.2e-06    0.0046   15.8   0.4   208   245   172   209   159   216 0.89 IMP dehydrogenase / GMP reductase domain
NanE                 PF04131.9    192 sp|P30139|THIG_ECOLI -            256    0.0043   16.0   0.3   1   1   4.2e-06    0.0089   15.0   0.2   140   178   171   209   156   226 0.82 Putative N-acetylmannosamine-6-phosphate epimerase
PcrB                 PF01884.12   231 sp|P30139|THIG_ECOLI -            256     0.017   14.3   0.1   2   2   2.1e-05     0.044   13.0   0.1   172   222   165   216   152   224 0.82 PcrB family
NMO                  PF03060.10   330 sp|P30139|THIG_ECOLI -            256       0.3   10.1   4.7   2   2   0.00014      0.29   10.2   2.3   130   227   117   212   108   229 0.80 Nitronate monooxygenase
BATS                 PF06968.8     93 sp|P30140|THIH_ECOLI -            377   1.2e-21   76.3   0.0   2   2   7.7e-25   5.7e-21   74.1   0.0     1    93   256   361   256   361 0.98 Biotin and Thiamin Synthesis associated domain
Radical_SAM          PF04055.16   166 sp|P30140|THIH_ECOLI -            377   1.2e-08   35.3   0.0   1   1   2.7e-12     2e-08   34.6   0.0     4   155    82   231    79   238 0.85 Radical SAM superfamily
ThiI                 PF02568.9    197 sp|P77718|THII_ECOLI -            482   5.9e-77  257.5   0.0   1   1   4.2e-80   8.8e-77  257.0   0.0     1   197   175   369   175   369 0.99 Thiamine biosynthesis protein (ThiI)
THUMP                PF02926.12   144 sp|P77718|THII_ECOLI -            482   2.3e-29  102.1   0.3   1   1   1.1e-32   2.3e-29  102.1   0.3     1   140    28   161    28   164 0.97 THUMP domain
QueC                 PF06508.8    210 sp|P77718|THII_ECOLI -            482   0.00078   18.7   0.2   1   3   0.00018      0.38    9.9   0.0     3    39   181   218   179   244 0.83 Queuosine biosynthesis protein QueC
ATP_bind_4           PF01902.12   219 sp|P77718|THII_ECOLI -            482    0.0021   17.4   0.2   2   2   5.6e-05      0.12   11.7   0.0   107   181   215   288   210   305 0.86 ATP-binding region
tRNA_Me_trans        PF03054.11   356 sp|P77718|THII_ECOLI -            482     0.045   12.3   0.0   1   1   7.4e-05      0.16   10.5   0.0     2    34   179   211   178   228 0.86 tRNA methyl transferase
Rhodanese            PF00581.15   113 sp|P77718|THII_ECOLI -            482     0.065   13.5   0.0   1   1   8.7e-05      0.18   12.1   0.0    15   103   409   480   397   481 0.79 Rhodanese-like domain
NAD_synthase         PF02540.12   242 sp|P77718|THII_ECOLI -            482     0.096   11.5   1.3   2   2   0.00024      0.51    9.1   0.1   148   227   313   400   309   404 0.82 NAD synthase
APH                  PF01636.18   239 sp|P75948|THIK_ECOLI -            274   3.1e-19   69.6   8.3   1   1   4.3e-23   3.2e-19   69.6   7.7     2   237    25   233    24   235 0.78 Phosphotransferase enzyme family
Choline_kinase       PF01633.15   211 sp|P75948|THIK_ECOLI -            274   6.5e-06   25.8   0.0   1   1   1.3e-09   9.4e-06   25.3   0.0   142   194   158   212   140   235 0.78 Choline/ethanolamine kinase
AIRS                 PF00586.19    96 sp|P0AGG0|THIL_ECOLI -            325   1.3e-23   83.0   0.0   1   2   4.2e-27   3.1e-23   81.8   0.0     1    96    28   123    28   123 0.98 AIR synthase related protein, N-terminal domain
AIRS_C               PF02769.17   153 sp|P0AGG0|THIL_ECOLI -            325   1.3e-09   38.2   0.0   1   1   2.5e-13   1.8e-09   37.7   0.0     1   145   150   299   150   303 0.74 AIR synthase related protein, C-terminal domain
HK                   PF02110.10   246 sp|P76423|THIM_ECOLI -            262  6.4e-105  349.7   0.8   1   1  2.4e-108  7.2e-105  349.5   0.8     1   246    15   259    15   259 0.99 Hydroxyethylthiazole kinase family
Phos_pyr_kin         PF08543.7    246 sp|P76423|THIM_ECOLI -            262   1.6e-07   30.7   0.4   1   1   1.1e-10   3.3e-07   29.7   0.4    72   241    79   241    32   245 0.76 Phosphomethylpyrimidine kinase
Carb_kinase          PF01256.12   242 sp|P76423|THIM_ECOLI -            262   4.6e-05   22.8   0.6   1   1   2.1e-08   6.4e-05   22.3   0.6    47   226    48   238    10   252 0.80 Carbohydrate kinase
PfkB                 PF00294.19   301 sp|P76423|THIM_ECOLI -            262    0.0009   18.4   0.0   1   2   2.7e-06     0.008   15.3   0.1   113   225    50   171    20   175 0.76 pfkB family carbohydrate kinase
Thioredoxin          PF00085.15   104 sp|P0AGG4|THIO2_ECOLI -            139   4.8e-30  103.3   0.9   2   2   7.7e-32   7.1e-29   99.5   0.0     2   102    37   136    36   138 0.94 Thioredoxin
Thioredoxin_2        PF13098.1    112 sp|P0AGG4|THIO2_ECOLI -            139   1.5e-12   47.6   0.0   1   1   1.1e-14   9.8e-12   45.0   0.0     7   112    54   135    49   135 0.88 Thioredoxin-like domain
Thioredoxin_8        PF13905.1     95 sp|P0AGG4|THIO2_ECOLI -            139   2.2e-08   34.1   0.0   1   2   3.7e-09   3.4e-06   27.0   0.0     3    46    54    95    52    97 0.90 Thioredoxin-like
Thioredoxin_8        PF13905.1     95 sp|P0AGG4|THIO2_ECOLI -            139   2.2e-08   34.1   0.0   2   2   0.00037      0.34   11.0   0.0    51    93    75   116    74   119 0.84 Thioredoxin-like
Thioredoxin_7        PF13899.1     82 sp|P0AGG4|THIO2_ECOLI -            139   7.5e-08   32.2   0.4   2   2   9.5e-10   8.8e-07   28.8   0.0     8    81    43   114    36   115 0.82 Thioredoxin-like
Redoxin              PF08534.5    146 sp|P0AGG4|THIO2_ECOLI -            139   1.9e-06   27.4   0.1   1   2   8.2e-08   7.6e-05   22.2   0.0    28    73    52    95    34   103 0.87 Redoxin
zinc_ribbon_4        PF13717.1     36 sp|P0AGG4|THIO2_ECOLI -            139   3.4e-06   26.6   1.0   1   1   7.7e-09   7.1e-06   25.6   1.0     1    33     1    30     1    33 0.96 zinc-ribbon domain
zinc_ribbon_5        PF13719.1     37 sp|P0AGG4|THIO2_ECOLI -            139   4.2e-06   26.2   0.9   1   1     1e-08   9.4e-06   25.1   0.9     1    33     1    30     1    33 0.96 zinc-ribbon domain
Thioredoxin_9        PF14595.1    129 sp|P0AGG4|THIO2_ECOLI -            139   2.7e-05   23.7   0.0   1   1   3.6e-08   3.4e-05   23.4   0.0    48   109    59   117    36   129 0.75 Thioredoxin
HyaE                 PF07449.6    107 sp|P0AGG4|THIO2_ECOLI -            139   9.4e-05   22.2   0.0   1   1   1.6e-07   0.00015   21.6   0.0    52   100    76   124    67   129 0.87 Hydrogenase-1 expression protein HyaE
Thioredoxin_6        PF13848.1    184 sp|P0AGG4|THIO2_ECOLI -            139   0.00011   22.0   0.0   1   1   1.4e-07   0.00013   21.7   0.0    79   163    37   116    33   137 0.83 Thioredoxin-like domain
Thioredoxin_3        PF13192.1     76 sp|P0AGG4|THIO2_ECOLI -            139   0.00017   21.3   0.2   1   1   6.9e-07   0.00064   19.4   0.0     8    60    62   119    55   130 0.81 Thioredoxin domain
zf-ribbon_3          PF13248.1     26 sp|P0AGG4|THIO2_ECOLI -            139    0.0018   17.4   0.2   1   1   1.9e-06    0.0018   17.4   0.2     3    26     3    32     1    32 0.87 zinc-ribbon domain
Glutaredoxin         PF00462.19    60 sp|P0AGG4|THIO2_ECOLI -            139    0.0021   18.0   0.2   1   1   7.3e-06    0.0067   16.3   0.0     4    59    59   118    55   119 0.79 Glutaredoxin
AhpC-TSA             PF00578.16   124 sp|P0AGG4|THIO2_ECOLI -            139    0.0026   17.4   0.0   1   1   5.7e-06    0.0053   16.4   0.0    20    67    45    92    29   102 0.75 AhpC/TSA family
Thioredoxin_4        PF13462.1    163 sp|P0AGG4|THIO2_ECOLI -            139    0.0029   17.6   1.2   1   2   0.00054       0.5   10.3   0.0    16    54    55    91    50    97 0.88 Thioredoxin
TraF                 PF13728.1    215 sp|P0AGG4|THIO2_ECOLI -            139      0.11   12.0   0.0   1   1   0.00016      0.14   11.5   0.0   129   192    61   115    55   125 0.89 F plasmid transfer operon protein
Thioredoxin          PF00085.15   104 sp|P0AA25|THIO_ECOLI -            109   3.8e-34  116.5   0.0   1   1   3.6e-37   4.1e-34  116.3   0.0     2   103     5   106     4   107 0.98 Thioredoxin
Thioredoxin_2        PF13098.1    112 sp|P0AA25|THIO_ECOLI -            109   1.7e-10   41.0   0.1   1   1   1.4e-12   1.6e-09   37.9   0.1     7   112    23   104    17   104 0.90 Thioredoxin-like domain
Thioredoxin_8        PF13905.1     95 sp|P0AA25|THIO_ECOLI -            109   3.6e-08   33.4   0.0   1   2   1.9e-09   2.1e-06   27.7   0.0     4    46    24    64    21    67 0.91 Thioredoxin-like
Thioredoxin_9        PF14595.1    129 sp|P0AA25|THIO_ECOLI -            109   7.6e-05   22.2   0.0   1   1   7.1e-08   8.1e-05   22.1   0.0    45   107    24    85     3   101 0.83 Thioredoxin
Thioredoxin_7        PF13899.1     82 sp|P0AA25|THIO_ECOLI -            109   0.00011   22.0   0.0   1   1   1.4e-07   0.00016   21.6   0.0    18    81    22    83    13    84 0.89 Thioredoxin-like
Thioredoxin_3        PF13192.1     76 sp|P0AA25|THIO_ECOLI -            109   0.00042   20.0   0.0   1   1   4.4e-07    0.0005   19.8   0.0    10    75    33   104    23   105 0.80 Thioredoxin domain
Redoxin              PF08534.5    146 sp|P0AA25|THIO_ECOLI -            109    0.0012   18.4   0.0   1   2   5.4e-06    0.0061   16.1   0.0    27    71    20    62     6    68 0.78 Redoxin
AhpC-TSA             PF00578.16   124 sp|P0AA25|THIO_ECOLI -            109     0.003   17.2   0.0   1   1   3.4e-06    0.0039   16.8   0.0    26    69    22    63     8   104 0.82 AhpC/TSA family
TraF                 PF13728.1    215 sp|P0AA25|THIO_ECOLI -            109    0.0066   15.9   0.0   1   1   7.9e-06     0.009   15.5   0.0   124   212    25   102    17   104 0.83 F plasmid transfer operon protein
Thioredoxin_6        PF13848.1    184 sp|P0AA25|THIO_ECOLI -            109     0.015   15.1   0.0   1   1   1.9e-05     0.022   14.5   0.0   117   183    43   105    37   108 0.64 Thioredoxin-like domain
DUF836               PF05768.9     81 sp|P0AA25|THIO_ECOLI -            109     0.041   14.1   0.0   1   1   5.3e-05      0.06   13.6   0.0     9    55    32    81    28   105 0.81 Glutaredoxin-like domain (DUF836)
HyaE                 PF07449.6    107 sp|P0AA25|THIO_ECOLI -            109     0.069   13.0   0.0   1   1   8.3e-05     0.094   12.6   0.0    48    95    41    88    34    99 0.89 Hydrogenase-1 expression protein HyaE
BPD_transp_1         PF00528.17   185 sp|P31549|THIP_ECOLI -            536   1.1e-16   60.9  21.7   1   3   4.3e-15   2.1e-11   43.6   9.8     5   181    74   266    70   273 0.83 Binding-protein-dependent transport system inner membrane component
BPD_transp_1         PF00528.17   185 sp|P31549|THIP_ECOLI -            536   1.1e-16   60.9  21.7   3   3   2.5e-11   1.2e-07   31.4   4.0    22   172   373   523   359   532 0.81 Binding-protein-dependent transport system inner membrane component
UPF0182              PF03699.8    774 sp|P31549|THIP_ECOLI -            536      0.33    8.8   1.4   1   1   0.00015      0.75    7.6   1.4     7    84   291   369   285   417 0.78 Uncharacterised protein family (UPF0182)
ABC_tran             PF00005.22   137 sp|P31548|THIQ_ECOLI -            232   8.7e-37  126.4   0.0   1   1   2.3e-39   1.4e-36  125.8   0.0     4   136    18   157    16   158 0.96 ABC transporter
AAA_21               PF13304.1    303 sp|P31548|THIQ_ECOLI -            232   6.1e-12   46.1   0.2   1   2   2.1e-05     0.013   15.5   0.3     3    23    29    49    28    73 0.82 AAA domain
AAA_21               PF13304.1    303 sp|P31548|THIQ_ECOLI -            232   6.1e-12   46.1   0.2   2   2   2.7e-09   1.6e-06   28.3   0.0   235   298   128   189   123   191 0.92 AAA domain
SMC_N                PF02463.14   220 sp|P31548|THIQ_ECOLI -            232   2.4e-06   26.9   0.1   1   1   3.1e-08   1.8e-05   24.0   0.1    26   199    27   190    19   207 0.74 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P31548|THIQ_ECOLI -            232   1.3e-05   24.6   0.1   1   1   5.1e-08     3e-05   23.4   0.1    21    51    23    53     3    58 0.80 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|P31548|THIQ_ECOLI -            232   5.9e-05   23.1   0.2   1   1   2.1e-07   0.00013   22.0   0.2     9    82     7    82     5   203 0.55 AAA ATPase domain
DUF258               PF03193.11   161 sp|P31548|THIQ_ECOLI -            232   0.00034   19.8   0.0   1   1   1.1e-06   0.00064   18.9   0.0    35    58    25    48    16    74 0.83 Protein of unknown function, DUF258
AAA_10               PF12846.2    304 sp|P31548|THIQ_ECOLI -            232    0.0012   18.3   0.4   1   1   2.9e-06    0.0017   17.8   0.4     4    25    28    49    26   202 0.80 AAA-like domain
MMR_HSR1             PF01926.18   116 sp|P31548|THIQ_ECOLI -            232    0.0041   17.0   0.1   1   1   8.8e-06    0.0052   16.7   0.1     1    20    27    46    27   205 0.90 50S ribosome-binding GTPase
SbcCD_C              PF13558.1     90 sp|P31548|THIQ_ECOLI -            232    0.0042   16.9   0.1   1   1   6.4e-05     0.038   13.9   0.1    31    88   128   172   109   174 0.72 Putative exonuclease SbcCD, C subunit
AAA_25               PF13481.1    194 sp|P31548|THIQ_ECOLI -            232    0.0068   15.8   0.0   1   1   2.7e-05     0.016   14.6   0.0    30    77    22    76     7    93 0.78 AAA domain
AAA_19               PF13245.1     76 sp|P31548|THIQ_ECOLI -            232    0.0068   16.1   0.8   1   1   3.3e-05      0.02   14.6   0.1     9    37    25    51    19    68 0.82 Part of AAA domain
AAA_23               PF13476.1    202 sp|P31548|THIQ_ECOLI -            232    0.0069   16.7   0.0   1   1   1.5e-05    0.0091   16.3   0.0    22    46    28    52    18    85 0.87 AAA domain
AAA_15               PF13175.1    415 sp|P31548|THIQ_ECOLI -            232    0.0082   15.2   0.0   2   2    0.0007      0.42    9.6   0.0   372   411   150   189   142   191 0.92 AAA ATPase domain
AAA_17               PF13207.1    121 sp|P31548|THIQ_ECOLI -            232    0.0091   16.8   0.1   1   1   2.8e-05     0.017   15.9   0.1     2    20    28    46    28    69 0.89 AAA domain
NACHT                PF05729.7    166 sp|P31548|THIQ_ECOLI -            232     0.018   14.7   0.2   1   1   0.00049      0.29   10.7   0.1     2    21    27    46    26    51 0.89 NACHT domain
AAA_22               PF13401.1    131 sp|P31548|THIQ_ECOLI -            232     0.019   15.1   0.2   1   1   0.00021      0.12   12.4   0.2     7    27    28    48    22   191 0.77 AAA domain
AAA_30               PF13604.1    196 sp|P31548|THIQ_ECOLI -            232     0.032   13.8   0.2   1   1   0.00016     0.094   12.2   0.0    15    43    23    50    18    64 0.80 AAA domain
Dynamin_N            PF00350.18   168 sp|P31548|THIQ_ECOLI -            232     0.059   13.1   0.2   1   1   0.00038      0.23   11.2   0.2     1    22    28    49    28    61 0.85 Dynamin family
IstB_IS21            PF01695.12   178 sp|P31548|THIQ_ECOLI -            232     0.061   12.7   0.1   1   2   0.00053      0.32   10.4   0.0    44    63    22    41    16    47 0.89 IstB-like ATP binding protein
AAA_18               PF13238.1    129 sp|P31548|THIQ_ECOLI -            232      0.12   12.6   0.0   1   1   0.00038      0.23   11.7   0.0     1    19    28    46    28   110 0.84 AAA domain
AAA_28               PF13521.1    163 sp|P31548|THIQ_ECOLI -            232      0.15   12.0   0.6   1   1   0.00042      0.25   11.2   0.2     2    20    28    46    27    61 0.89 AAA domain
AAA_24               PF13479.1    213 sp|P31548|THIQ_ECOLI -            232      0.16   11.5   0.1   1   1   0.00083      0.49    9.9   0.0     5    21    27    43    23    63 0.89 AAA domain
DUF87                PF01935.12   229 sp|P31548|THIQ_ECOLI -            232      0.17   11.6   0.1   1   1   0.00048      0.28   10.9   0.1    25    43    27    45    17    58 0.89 Domain of unknown function DUF87
Zeta_toxin           PF06414.7    201 sp|P31548|THIQ_ECOLI -            232      0.18   10.9   0.0   1   1   0.00046      0.28   10.2   0.0    19    50    28    60    17    69 0.84 Zeta toxin
ThiS                 PF02597.15    77 sp|O32583|THIS_ECOLI -             66   9.3e-18   64.4   0.1   1   1   2.8e-21     1e-17   64.3   0.1     1    77     3    66     3    66 0.98 ThiS family
Lambda_tail_I        PF06805.7     82 sp|O32583|THIS_ECOLI -             66   7.6e-05   22.4   0.1   1   1   2.6e-08   9.6e-05   22.1   0.1    29    82    16    66    12    66 0.89 Bacteriophage lambda tail assembly protein I
ThiS-like            PF14453.1     57 sp|O32583|THIS_ECOLI -             66     0.078   12.8   0.0   1   2   0.00012      0.43   10.4   0.0     1    24     1    24     1    37 0.91 ThiS-like ubiquitin
Fer2_4               PF13510.1     82 sp|O32583|THIS_ECOLI -             66     0.098   12.4   0.0   1   1   3.3e-05      0.12   12.1   0.0     5    31     2    28     1    52 0.85 2Fe-2S iron-sulfur cluster binding domain
LigT_PEase           PF02834.11    87 sp|P37025|THPR_ECOLI -            176   2.2e-23   82.0   0.5   1   2   2.5e-16   1.2e-12   47.5   0.1     1    87    11    89    11    89 0.92 LigT like Phosphoesterase
LigT_PEase           PF02834.11    87 sp|P37025|THPR_ECOLI -            176   2.2e-23   82.0   0.5   2   2   2.1e-11     1e-07   31.7   0.0     4    85    92   164    90   166 0.72 LigT like Phosphoesterase
2_5_RNA_ligase2      PF13563.1    153 sp|P37025|THPR_ECOLI -            176   9.7e-11   41.6   0.0   1   1   2.2e-14   1.1e-10   41.4   0.0     2   121    14   135    13   165 0.87 2'-5' RNA ligase superfamily
AKAP7_NLS            PF10469.4    209 sp|P37025|THPR_ECOLI -            176      0.19   11.3   0.0   1   1   8.5e-05      0.42   10.2   0.0    92   150    83   131    16   159 0.75 AKAP7 2'5' RNA ligase-like domain
PALP                 PF00291.20   306 sp|P00934|THRC_ECOLI -            428   1.6e-25   90.0   0.0   1   1     3e-29   2.2e-25   89.5   0.0    30   287    96   365    95   373 0.79 Pyridoxal-phosphate dependent enzyme
Thr_synth_N          PF14821.1     79 sp|P00934|THRC_ECOLI -            428   6.9e-15   54.8   0.1   1   2   4.7e-18   3.5e-14   52.5   0.0     7    79     8    80     4    80 0.96 Threonine synthase N terminus
Trigger_N            PF05697.8    145 sp|P0A850|TIG_ECOLI  -            432   7.4e-46  155.5   0.2   1   2   1.5e-49   7.4e-46  155.5   0.2     1   145     1   145     1   145 0.99 Bacterial trigger factor protein (TF)
Trigger_C            PF05698.9    162 sp|P0A850|TIG_ECOLI  -            432   3.3e-39  134.3  11.0   1   1   6.7e-43   3.3e-39  134.3  11.0     1   161   262   412   262   413 0.99 Bacterial trigger factor protein (TF) C-terminus
FKBP_C               PF00254.23    94 sp|P0A850|TIG_ECOLI  -            432   8.3e-17   60.9   0.4   1   1   4.5e-20   2.2e-16   59.6   0.4     5    93   158   237   154   238 0.93 FKBP-type peptidyl-prolyl cis-trans isomerase
ATP_bind_3           PF01171.15   182 sp|P52097|TILS_ECOLI -            432   3.8e-60  202.5   0.0   1   1   2.4e-63     5e-60  202.1   0.0     1   180    14   191    14   193 0.97 PP-loop family
TilS_C               PF11734.3     74 sp|P52097|TILS_ECOLI -            432   3.4e-26   90.2   0.0   1   1   6.2e-29   1.3e-25   88.3   0.0     1    74   356   427   356   427 0.90 TilS substrate C-terminal domain
TilS                 PF09179.6     69 sp|P52097|TILS_ECOLI -            432   9.5e-23   80.0   4.7   1   1   1.8e-25   3.8e-22   78.0   4.7     1    69   241   309   241   309 0.98 TilS substrate binding domain
tRNA_Me_trans        PF03054.11   356 sp|P52097|TILS_ECOLI -            432   0.00094   17.8   0.0   1   1   6.1e-07    0.0013   17.3   0.0     2    67    14    77    13    85 0.88 tRNA methyl transferase
Asn_synthase         PF00733.16   255 sp|P52097|TILS_ECOLI -            432     0.003   17.0   0.0   1   1   2.3e-06    0.0049   16.4   0.0    10    39     5    34     2   133 0.80 Asparagine synthase
PAPS_reduct          PF01507.14   174 sp|P52097|TILS_ECOLI -            432     0.061   13.1   0.0   1   1   6.6e-05      0.14   11.9   0.0     2    41    15    54    14   106 0.74 Phosphoadenosine phosphosulfate reductase family
QueC                 PF06508.8    210 sp|P52097|TILS_ECOLI -            432      0.17   11.1   0.0   1   1   0.00013      0.28   10.4   0.0     2    21    15    34    14    91 0.63 Queuosine biosynthesis protein QueC
Transketolase_N      PF00456.16   333 sp|P27302|TKT1_ECOLI -            663    7e-171  567.4   0.2   1   1    4e-174  9.9e-171  566.9   0.2     2   333     4   334     3   334 1.00 Transketolase, thiamine diphosphate binding domain
Transket_pyr         PF02779.19   178 sp|P27302|TKT1_ECOLI -            663   1.5e-44  151.6   0.5   1   1   1.3e-47   3.3e-44  150.4   0.0     2   176   354   524   353   526 0.96 Transketolase, pyrimidine binding domain
Transketolase_C      PF02780.15   124 sp|P27302|TKT1_ECOLI -            663   3.1e-17   62.6   0.1   1   1   2.7e-20   6.7e-17   61.5   0.1     1   124   540   655   540   655 0.94 Transketolase, C-terminal domain
DXP_synthase_N       PF13292.1    270 sp|P27302|TKT1_ECOLI -            663   6.1e-09   35.1   0.0   1   2   1.4e-08   3.4e-05   22.9   0.0    18   179     4   193     1   199 0.80 1-deoxy-D-xylulose-5-phosphate synthase
DXP_synthase_N       PF13292.1    270 sp|P27302|TKT1_ECOLI -            663   6.1e-09   35.1   0.0   2   2   9.3e-05      0.23   10.3   0.0   228   270   202   245   192   245 0.85 1-deoxy-D-xylulose-5-phosphate synthase
E1_dh                PF00676.15   300 sp|P27302|TKT1_ECOLI -            663    0.0012   17.5   0.0   1   1     1e-06    0.0025   16.5   0.0    96   211   109   235    84   245 0.80 Dehydrogenase E1 component
TPP_enzyme_C         PF02775.16   153 sp|P27302|TKT1_ECOLI -            663      0.03   13.8   6.5   1   2   3.4e-05     0.084   12.4   1.4    24   150   110   240    94   243 0.70 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
Transketolase_N      PF00456.16   333 sp|P33570|TKT2_ECOLI -            667  6.8e-169  560.9   0.0   1   1    4e-172  9.8e-169  560.4   0.0     2   333     3   333     2   333 1.00 Transketolase, thiamine diphosphate binding domain
Transket_pyr         PF02779.19   178 sp|P33570|TKT2_ECOLI -            667     6e-47  159.4   0.0   1   1   4.4e-50   1.1e-46  158.5   0.0     2   176   353   523   352   525 0.97 Transketolase, pyrimidine binding domain
Transketolase_C      PF02780.15   124 sp|P33570|TKT2_ECOLI -            667   1.2e-16   60.8   0.0   1   1   1.4e-19   3.4e-16   59.3   0.0     1   124   539   654   539   654 0.86 Transketolase, C-terminal domain
E1_dh                PF00676.15   300 sp|P33570|TKT2_ECOLI -            667    0.0038   15.9   0.0   1   1   2.8e-06    0.0069   15.1   0.0   100   210   112   233    88   245 0.78 Dehydrogenase E1 component
TPP_enzyme_C         PF02775.16   153 sp|P33570|TKT2_ECOLI -            667    0.0059   16.1   0.1   1   2   0.00021      0.51    9.9   0.1    24    62   109   161    93   169 0.76 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
PmbA_TldD            PF01523.11   293 sp|P0AGG8|TLDD_ECOLI -            481   5.2e-75  252.4   1.1   1   1   5.3e-79   7.8e-75  251.8   1.1     1   293    34   332    34   332 0.92 Putative modulator of DNA gyrase
GNAT_acetyltr_2      PF13718.1    196 sp|P76562|TMCA_ECOLI -            671   5.4e-53  179.2   0.3   1   1   4.6e-55   6.2e-52  175.7   0.3     1   195   368   533   368   534 0.98 GNAT acetyltransferase 2
Helicase_RecD        PF05127.9    177 sp|P76562|TMCA_ECOLI -            671   5.8e-43  146.5   1.0   1   1   4.4e-44     6e-41  140.0   1.0     2   177   197   337   196   337 0.96 Helicase
tRNA_bind_2          PF13725.1    101 sp|P76562|TMCA_ECOLI -            671   2.4e-09   37.1   0.1   1   1   4.2e-12   5.6e-09   36.0   0.1     2    99   549   635   548   637 0.97 Possible tRNA binding domain
DUF1726              PF08351.6     92 sp|P76562|TMCA_ECOLI -            671   3.1e-06   26.7   0.0   1   1   4.9e-09   6.6e-06   25.7   0.0     5    86    66   147    63   153 0.80 Domain of unknown function (DUF1726)
Acetyltransf_10      PF13673.1    117 sp|P76562|TMCA_ECOLI -            671   1.1e-05   25.5   2.1   1   2    0.0007      0.94    9.6   0.0     8    66   354   416   350   445 0.67 Acetyltransferase (GNAT) domain
Acetyltransf_10      PF13673.1    117 sp|P76562|TMCA_ECOLI -            671   1.1e-05   25.5   2.1   2   2   3.1e-05     0.042   13.9   0.2    63   117   454   509   433   509 0.82 Acetyltransferase (GNAT) domain
AAA_30               PF13604.1    196 sp|P76562|TMCA_ECOLI -            671   4.8e-05   23.0   0.8   1   1   1.8e-07   0.00024   20.7   0.5     4   119   178   281   176   290 0.86 AAA domain
Acetyltransf_7       PF13508.1     79 sp|P76562|TMCA_ECOLI -            671   5.1e-05   23.3   0.0   1   1   8.9e-08   0.00012   22.1   0.0    26    78   455   510   394   511 0.79 Acetyltransferase (GNAT) domain
AAA_16               PF13191.1    185 sp|P76562|TMCA_ECOLI -            671    0.0013   18.7   0.1   2   2   8.9e-05      0.12   12.3   0.0     8    81   179   247   177   318 0.69 AAA ATPase domain
Acetyltransf_1       PF00583.19    83 sp|P76562|TMCA_ECOLI -            671    0.0018   18.2   0.1   1   1   3.1e-06    0.0042   17.0   0.1    28    82   458   509   433   510 0.84 Acetyltransferase (GNAT) family
AAA_25               PF13481.1    194 sp|P76562|TMCA_ECOLI -            671    0.0053   16.1   0.1   1   1   1.1e-05     0.015   14.6   0.1    16    65   174   223   164   261 0.83 AAA domain
Acetyltransf_9       PF13527.1    127 sp|P76562|TMCA_ECOLI -            671     0.082   12.7   0.0   1   1   0.00021      0.28   11.0   0.0    70   124   453   509   432   512 0.77 Acetyltransferase (GNAT) domain
Beta_elim_lyase      PF01212.16   290 sp|P0A853|TNAA_ECOLI -            471   1.9e-97  325.9   0.0   1   1  4.5e-101   2.2e-97  325.6   0.0     1   289    49   437    49   438 0.99 Beta-eliminating lyase
Aminotran_1_2        PF00155.16   363 sp|P0A853|TNAA_ECOLI -            471   9.6e-05   21.4   0.0   1   2   3.5e-07    0.0017   17.3   0.0    32   189    66   229    49   230 0.82 Aminotransferase class I and II
SLA_LP_auto_ag       PF05889.8    389 sp|P0A853|TNAA_ECOLI -            471    0.0056   15.1   0.0   2   2   2.7e-06     0.013   13.9   0.0   140   233   172   280   163   290 0.70 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)
Trp_Tyr_perm         PF03222.8    394 sp|P23173|TNAB_ECOLI -            415  1.2e-149  498.4  35.3   1   1  2.7e-153  1.4e-149  498.2  35.3     1   394     7   403     7   403 0.99 Tryptophan/tyrosine permease family
AA_permease_2        PF13520.1    426 sp|P23173|TNAB_ECOLI -            415   2.2e-05   23.1  56.3   1   1   5.2e-09   2.6e-05   22.9  56.3     7   405    15   407    10   415 0.78 Amino acid permease
PD40                 PF07676.7     39 sp|P0A855|TOLB_ECOLI -            430   1.2e-35  120.5   5.0   1   6   3.1e-08   9.3e-05   21.9   0.1    11    34   202   223   197   226 0.82 WD40-like Beta Propeller Repeat
PD40                 PF07676.7     39 sp|P0A855|TOLB_ECOLI -            430   1.2e-35  120.5   5.0   2   6     1e-12   3.1e-09   36.2   0.0     2    39   237   272   236   272 0.95 WD40-like Beta Propeller Repeat
PD40                 PF07676.7     39 sp|P0A855|TOLB_ECOLI -            430   1.2e-35  120.5   5.0   3   6     8e-13   2.4e-09   36.6   0.1     2    38   281   315   280   316 0.96 WD40-like Beta Propeller Repeat
PD40                 PF07676.7     39 sp|P0A855|TOLB_ECOLI -            430   1.2e-35  120.5   5.0   5   6   5.3e-07    0.0016   18.0   0.0     3    30   369   396   367   402 0.93 WD40-like Beta Propeller Repeat
TolB_N               PF04052.8    105 sp|P0A855|TOLB_ECOLI -            430   1.4e-31  108.6   0.0   1   1   1.3e-34   3.8e-31  107.2   0.0     1    99    23   121    23   126 0.97 TolB amino-terminal domain
DPPIV_N              PF00930.16   353 sp|P0A855|TOLB_ECOLI -            430   1.7e-13   49.8   0.0   1   2    0.0001       0.3    9.6   0.0    40    61   199   218   172   241 0.74 Dipeptidyl peptidase IV (DPP IV) N-terminal region
DPPIV_N              PF00930.16   353 sp|P0A855|TOLB_ECOLI -            430   1.7e-13   49.8   0.0   2   2   2.9e-13   8.6e-10   37.7   0.0   239   348   248   352   219   357 0.86 Dipeptidyl peptidase IV (DPP IV) N-terminal region
Pectate_lyase22      PF14583.1    386 sp|P0A855|TOLB_ECOLI -            430   1.8e-10   39.8   0.1   3   5     5e-08   0.00015   20.3   0.0    42    83   250   291   246   293 0.96 Oligogalacturonate lyase
Peptidase_S9_N       PF02897.10   414 sp|P0A855|TOLB_ECOLI -            430   9.6e-05   21.1   0.0   2   2   1.5e-07   0.00044   18.9   0.0   130   250   250   355   245   383 0.86 Prolyl oligopeptidase, N-terminal beta-propeller domain
OEP                  PF02321.13   188 sp|P02930|TOLC_ECOLI -            493   7.4e-60  201.7  39.4   1   2   2.4e-30   1.8e-26   92.9  19.5     2   188    26   209    25   209 0.98 Outer membrane efflux protein
OEP                  PF02321.13   188 sp|P02930|TOLC_ECOLI -            493   7.4e-60  201.7  39.4   2   2   3.7e-37   2.7e-33  115.1  11.9     2   188   232   427   231   427 0.98 Outer membrane efflux protein
ExbD                 PF02472.11   130 sp|P0ABV6|TOLR_ECOLI -            142   5.5e-23   81.3   0.1   1   1   8.2e-27   6.1e-23   81.2   0.1     2   129    10   141     9   142 0.89 Biopolymer transport protein ExbD/TolR
Radical_SAM          PF04055.16   166 sp|P0ABV6|TOLR_ECOLI -            142     0.096   12.8   0.0   1   1   2.3e-05      0.17   12.0   0.0    24    77    82   133    71   142 0.82 Radical SAM superfamily
MotA_ExbB            PF01618.11   139 sp|P0ABU9|TOLQ_ECOLI -            230   6.7e-47  158.6   0.2   1   1   1.2e-50   8.8e-47  158.2   0.2     2   138    74   210    73   211 0.98 MotA/TolQ/ExbB proton channel family
E1-E2_ATPase         PF00122.15   230 sp|P0ABU9|TOLQ_ECOLI -            230       2.1    7.3   7.8   2   2   2.5e-05      0.19   10.7   1.5   143   211   126   193    62   202 0.80 E1-E2 ATPase
TonB_C               PF03544.9     79 sp|P02929|TONB_ECOLI -            239   3.5e-20   71.9   0.1   1   1   1.3e-23   9.7e-20   70.5   0.1     2    71   160   230   159   233 0.91 Gram-negative bacterial TonB protein C-terminal
TonB_2               PF13103.1     85 sp|P02929|TONB_ECOLI -            239     0.011   15.7   0.0   1   1   1.5e-06     0.011   15.7   0.0    22    63   170   211   154   231 0.79 TonB C terminal
YbaJ                 PF10757.4    122 sp|P0AAR0|TOMB_ECOLI -            124   5.1e-71  236.4   1.2   1   1   1.1e-74   5.7e-71  236.3   1.2     1   121     1   121     1   122 0.99 Biofilm formation regulator YbaJ
Thg1C                PF14413.1    121 sp|P0AAR0|TOMB_ECOLI -            124    0.0049   16.5   0.1   1   1   1.9e-06    0.0092   15.6   0.1    54    79    85   113    70   122 0.84 Thg1 C terminal domain
LMP                  PF04778.7    157 sp|P0AAR0|TOMB_ECOLI -            124     0.034   13.9   0.1   1   1   7.8e-06     0.039   13.7   0.1    16   102    11    98     3   119 0.78 LMP repeated region
Topoisom_bac         PF01131.15   403 sp|P06612|TOP1_ECOLI -            865  4.5e-131  437.3   0.7   1   1  8.6e-134    8e-131  436.5   0.7     2   403   157   565   156   565 0.93 DNA topoisomerase
Topo_Zn_Ribbon       PF08272.6     42 sp|P06612|TOP1_ECOLI -            865   1.1e-39  133.4   0.7   1   2     6e-19   5.6e-16   57.6   0.0     2    42   758   797   757   797 0.96 Topoisomerase I zinc-ribbon-like
Topo_Zn_Ribbon       PF08272.6     42 sp|P06612|TOP1_ECOLI -            865   1.1e-39  133.4   0.7   2   2   2.9e-23   2.7e-20   71.4   2.7     1    42   824   865   824   865 0.98 Topoisomerase I zinc-ribbon-like
Toprim               PF01751.17   100 sp|P06612|TOP1_ECOLI -            865   8.8e-25   86.5   0.0   1   1   2.3e-27   2.2e-24   85.3   0.0     2   100     5   142     4   142 0.97 Toprim domain
zf-C4_Topoisom       PF01396.14    39 sp|P06612|TOP1_ECOLI -            865   4.1e-19   67.7  16.9   1   4   1.4e-08   1.3e-05   24.5   0.4     3    27   598   622   596   639 0.84 Topoisomerase DNA binding C4 zinc finger
zf-C4_Topoisom       PF01396.14    39 sp|P06612|TOP1_ECOLI -            865   4.1e-19   67.7  16.9   3   4   2.7e-14   2.5e-11   42.8   2.7     2    38   709   744   708   745 0.94 Topoisomerase DNA binding C4 zinc finger
Zn_ribbon_recom      PF13408.1     58 sp|P06612|TOP1_ECOLI -            865    0.0044   17.2  11.1   1   3   0.00024      0.22   11.8   0.0     8    52   599   645   597   649 0.76 Recombinase zinc beta ribbon domain
Toprim_4             PF13662.1     81 sp|P06612|TOP1_ECOLI -            865     0.062   13.3   0.2   1   1   0.00064      0.59   10.1   0.2    45    68    84   125     3   138 0.65 Toprim domain
Toprim_2             PF13155.1     96 sp|P06612|TOP1_ECOLI -            865     0.073   13.3   0.2   1   1   0.00034      0.31   11.3   0.0    33    75    91   131    70   150 0.73 Toprim-like
TF_Zn_Ribbon         PF08271.7     43 sp|P06612|TOP1_ECOLI -            865       5.4    6.4   8.3   2   2   0.00081      0.75    9.1   0.5     2    24   661   685   653   698 0.72 TFIIB zinc-binding
Topoisom_bac         PF01131.15   403 sp|P14294|TOP3_ECOLI -            653  3.3e-112  375.2   0.0   1   1  1.1e-115  3.9e-112  375.0   0.0     3   403   155   593   153   593 0.92 DNA topoisomerase
Toprim               PF01751.17   100 sp|P14294|TOP3_ECOLI -            653   1.8e-15   56.7   0.0   1   1   1.2e-18   4.3e-15   55.5   0.0     2    94     3   131     2   137 0.93 Toprim domain
FYRC                 PF05965.9     86 sp|P14294|TOP3_ECOLI -            653     0.003   17.3   0.0   1   2   3.5e-05      0.13   12.1   0.0    42    81   287   330   274   335 0.79 F/Y rich C-terminus
Toprim_4             PF13662.1     81 sp|P14294|TOP3_ECOLI -            653     0.026   14.5   0.0   1   1     2e-05     0.073   13.0   0.0    45    73    88   125    31   132 0.72 Toprim domain
Molybdopterin        PF00384.17   432 sp|P33225|TORA_ECOLI -            848  7.3e-107  357.7   0.0   1   1  1.2e-110  8.9e-107  357.4   0.0     1   431    99   572    99   573 0.95 Molybdopterin oxidoreductase
Molydop_binding      PF01568.16   110 sp|P33225|TORA_ECOLI -            848   4.4e-24   84.4   0.0   1   1   1.2e-27   9.1e-24   83.4   0.0     1   109   690   811   690   812 0.96 Molydopterin dinucleotide binding domain
Cytochrom_NNT        PF03264.9    174 sp|P33226|TORC_ECOLI -            390   3.2e-65  218.8   7.6   1   2   2.7e-67   3.4e-64  215.4   6.2     2   174    11   184    10   184 0.98 NapC/NirT cytochrome c family, N-terminal region
Cytochrome_C7        PF14522.1     65 sp|P33226|TORC_ECOLI -            390   1.1e-11   44.1  11.3   1   3   1.1e-06    0.0013   18.3   0.3    13    45    46    81    35   105 0.62 Cytochrome c7
Cytochrome_C7        PF14522.1     65 sp|P33226|TORC_ECOLI -            390   1.1e-11   44.1  11.3   2   3   3.1e-08   3.8e-05   23.2   3.8    11    48   134   177   121   196 0.64 Cytochrome c7
Cytochrome_C554      PF13435.1    130 sp|P33226|TORC_ECOLI -            390   7.5e-07   29.2  21.8   1   3   7.2e-07   0.00089   19.3   9.9    43   130    40   143    34   143 0.69 Cytochrome c554 and c-prime
Cytochrome_C554      PF13435.1    130 sp|P33226|TORC_ECOLI -            390   7.5e-07   29.2  21.8   2   3   6.9e-06    0.0085   16.1   8.5    16    90   103   179    93   206 0.58 Cytochrome c554 and c-prime
IRF-2BP1_2           PF11261.3     54 sp|P33226|TORC_ECOLI -            390     2e-05   23.9   0.7   1   1   3.4e-08   4.2e-05   22.9   0.1    13    51   124   162   120   165 0.91 Interferon regulatory factor 2-binding protein zinc finger
Cytochrome_CBB3      PF13442.1     67 sp|P33226|TORC_ECOLI -            390   0.00013   22.0  14.0   5   5   0.00025      0.31   11.2   0.0     8    20   323   335   318   372 0.79 Cytochrome C oxidase, cbb3-type, subunit III
Paired_CXXCH_1       PF09699.5     41 sp|P33226|TORC_ECOLI -            390    0.0011   18.4  24.7   5   6   4.6e-06    0.0057   16.1   5.0     7    38   136   176   130   179 0.73 Doubled CXXCH motif (Paired_CXXCH_1)
SbcD_C               PF12320.3    100 sp|P33226|TORC_ECOLI -            390      0.01   15.8   0.0   1   1   1.6e-05      0.02   14.9   0.0    24    75   237   290   210   302 0.72 Type 5 capsule protein repressor C-terminal domain
DHC                  PF09626.5    120 sp|P33226|TORC_ECOLI -            390     0.022   15.4  23.7   1   3   0.00018      0.23   12.1   0.7    72   113   102   143    88   149 0.84 Dihaem cytochrome c
DHC                  PF09626.5    120 sp|P33226|TORC_ECOLI -            390     0.022   15.4  23.7   3   3   0.00068      0.84   10.3   0.0     1    62   325   382   325   390 0.87 Dihaem cytochrome c
Cytochrom_CIII       PF02085.11   102 sp|P33226|TORC_ECOLI -            390      0.16   12.1  24.4   3   4   0.00077      0.95    9.5   9.4    43    89   131   180   116   189 0.70 Class III cytochrome C family
GF_recep_IV          PF14843.1    132 sp|P33226|TORC_ECOLI -            390      0.18   11.4   8.8   2   3   0.00031      0.39   10.3   1.3    16    58   135   177   127   189 0.85 Growth factor receptor domain IV
Nitrate_red_del      PF02613.10   136 sp|P36662|TORD_ECOLI -            199   2.1e-21   76.1   2.1   1   1   2.6e-25   3.9e-21   75.3   2.1     2   136    40   172    14   172 0.87 Nitrate reductase delta subunit
Phage_AlpA           PF05930.7     51 sp|Q2EES9|TORI_ECOLI -             66   0.00012   21.7   0.0   1   1   1.8e-08   0.00014   21.5   0.0     3    38    10    45     8    52 0.88 Prophage CP4-57 regulatory protein (AlpA)
HTH_17               PF12728.2     51 sp|Q2EES9|TORI_ECOLI -             66      0.02   15.1   0.1   1   1   3.6e-06     0.026   14.7   0.1    12    39    21    51    12    53 0.85 Helix-turn-helix domain
Peripla_BP_1         PF00532.16   279 sp|P38683|TORT_ECOLI -            342   7.9e-95  317.2   0.0   1   1   2.5e-98   9.2e-95  317.0   0.0     1   279    44   337    44   337 0.98 Periplasmic binding proteins and sugar binding domain of LacI family
Peripla_BP_4         PF13407.1    257 sp|P38683|TORT_ECOLI -            342     1e-19   70.9   0.1   1   1   3.5e-23   1.3e-19   70.5   0.1     5   256    51   296    49   297 0.87 Periplasmic binding protein domain
PALP                 PF00291.20   306 sp|P38683|TORT_ECOLI -            342   0.00053   19.3   0.1   1   1   1.6e-06    0.0058   15.8   0.1    73   137    68   200    64   303 0.61 Pyridoxal-phosphate dependent enzyme
Peripla_BP_6         PF13458.1    343 sp|P38683|TORT_ECOLI -            342   0.00087   18.7   0.2   1   2     2e-05     0.073   12.4   0.1   145   212    56   124    25   132 0.86 Periplasmic binding protein
Cytochrom_NNT        PF03264.9    174 sp|P52005|TORY_ECOLI -            366   3.6e-65  218.6   5.1   1   2   2.8e-66     3e-63  212.3   4.5     6   173     6   174     1   175 0.94 NapC/NirT cytochrome c family, N-terminal region
Cytochrome_C7        PF14522.1     65 sp|P52005|TORY_ECOLI -            366   3.5e-10   39.3  14.7   1   3   1.2e-06    0.0013   18.3   0.8    12    48    36    75    26    96 0.61 Cytochrome c7
Cytochrome_C7        PF14522.1     65 sp|P52005|TORY_ECOLI -            366   3.5e-10   39.3  14.7   2   3   1.8e-07   0.00019   21.0   5.4    11    49   125   169   107   192 0.63 Cytochrome c7
Cytochrome_C554      PF13435.1    130 sp|P52005|TORY_ECOLI -            366   5.9e-08   32.8  18.9   1   3   1.9e-07    0.0002   21.3   7.3    43   130    31   134    24   134 0.68 Cytochrome c554 and c-prime
Cytochrome_C554      PF13435.1    130 sp|P52005|TORY_ECOLI -            366   5.9e-08   32.8  18.9   2   3   9.7e-05       0.1   12.6   9.5    23    90   101   172    86   199 0.53 Cytochrome c554 and c-prime
Paired_CXXCH_1       PF09699.5     41 sp|P52005|TORY_ECOLI -            366   4.3e-07   29.3  18.1   1   5   0.00057      0.61    9.6   0.2    23    37    29    44    22    48 0.78 Doubled CXXCH motif (Paired_CXXCH_1)
Paired_CXXCH_1       PF09699.5     41 sp|P52005|TORY_ECOLI -            366   4.3e-07   29.3  18.1   3   5   0.00051      0.54    9.8   0.2    22    38   119   135   108   138 0.82 Doubled CXXCH motif (Paired_CXXCH_1)
Paired_CXXCH_1       PF09699.5     41 sp|P52005|TORY_ECOLI -            366   4.3e-07   29.3  18.1   4   5   0.00011      0.12   11.8   5.5     8    38   128   167   123   170 0.72 Doubled CXXCH motif (Paired_CXXCH_1)
Cytochrom_CIII       PF02085.11   102 sp|P52005|TORY_ECOLI -            366     0.001   19.1  23.1   3   4   0.00014      0.15   12.1   8.9    43    87   122   169   105   182 0.78 Class III cytochrome C family
DHC                  PF09626.5    120 sp|P52005|TORY_ECOLI -            366     0.012   16.3  22.4   2   4   0.00016      0.17   12.5   0.3    69   113    89   134    75   141 0.85 Dihaem cytochrome c
GF_recep_IV          PF14843.1    132 sp|P52005|TORY_ECOLI -            366      0.29   10.7   8.1   2   3   0.00019       0.2   11.2   1.0    16    57   126   167   115   187 0.86 Growth factor receptor domain IV
zf-C4pol             PF14260.1     73 sp|P52005|TORY_ECOLI -            366       7.7    6.6   9.0   2   2   0.00061      0.65   10.0   0.9     7    53   120   167   116   189 0.87 C4-type zinc-finger of DNA polymerase delta
Molybdopterin        PF00384.17   432 sp|P46923|TORZ_ECOLI -            809  4.3e-103  345.3   0.2   1   1  1.1e-106  5.4e-103  345.0   0.2     1   431    84   550    84   551 0.97 Molybdopterin oxidoreductase
Molydop_binding      PF01568.16   110 sp|P46923|TORZ_ECOLI -            809   1.5e-23   82.7   0.1   1   1     1e-26   5.2e-23   80.9   0.0     1   100   670   776   670   785 0.93 Molydopterin dinucleotide binding domain
TAT_signal           PF10518.4     26 sp|P46923|TORZ_ECOLI -            809      0.31   11.1   1.6   1   1   0.00011      0.53   10.4   0.1     2    24     3    25     2    27 0.87 TAT (twin-arginine translocation) pathway signal sequence
TIM                  PF00121.13   244 sp|P0A858|TPIS_ECOLI -            255   3.4e-93  311.1   1.0   1   1   2.6e-97   3.9e-93  311.0   1.0     1   243     4   245     4   246 0.97 Triosephosphate isomerase
Redoxin              PF08534.5    146 sp|P0A862|TPX_ECOLI  -            168   1.1e-28   99.6   0.1   1   1   1.7e-32   1.3e-28   99.3   0.1     1   146    20   163    20   163 0.95 Redoxin
AhpC-TSA             PF00578.16   124 sp|P0A862|TPX_ECOLI  -            168   4.7e-16   58.5   0.0   1   1   7.6e-20   5.7e-16   58.3   0.0     2   122    22   145    21   147 0.95 AhpC/TSA family
UPF0118              PF01594.11   327 sp|P0AFS5|TQSA_ECOLI -            344   4.9e-74  249.2  42.7   1   1   3.7e-78   5.5e-74  249.0  42.7     2   326    14   328    13   329 0.99 Domain of unknown function DUF20
Trehalase            PF01204.13   512 sp|P13482|TREA_ECOLI -            565  7.5e-176  585.7   5.7   1   1  2.4e-179  8.9e-176  585.4   5.7     1   511    55   532    55   533 0.97 Trehalase
GDE_C                PF06202.9    370 sp|P13482|TREA_ECOLI -            565   6.6e-11   41.5   0.0   1   1   4.2e-14   1.6e-10   40.2   0.0    46   273   171   441   157   447 0.86 Amylo-alpha-1,6-glucosidase
Glyco_hydro_63       PF03200.11   801 sp|P13482|TREA_ECOLI -            565   0.00025   19.0   2.9   1   2   2.6e-07   0.00098   17.0   0.2   556   623   333   400   316   424 0.91 Mannosyl oligosaccharide glucosidase
Bac_rhamnosid        PF05592.6    509 sp|P13482|TREA_ECOLI -            565    0.0038   15.4   0.4   1   1   1.9e-06    0.0072   14.5   0.4   277   353   338   424   297   447 0.81 Bacterial alpha-L-rhamnosidase
Alpha-amylase        PF00128.19   316 sp|P28904|TREC_ECOLI -            551  6.1e-111  370.8   0.0   1   1  1.7e-114  8.2e-111  370.3   0.0     1   313    30   371    30   378 0.98 Alpha amylase, catalytic domain
DUF3459              PF11941.3     89 sp|P28904|TREC_ECOLI -            551   7.9e-09   35.5   0.1   2   2   3.3e-11   1.6e-07   31.3   0.2     2    89   459   548   458   549 0.81 Domain of unknown function (DUF3459)
hDGE_amylase         PF14701.1    423 sp|P28904|TREC_ECOLI -            551    0.0014   17.5   0.0   1   1   4.4e-07    0.0022   16.9   0.0    25   111    36   115    24   124 0.89 glucanotransferase domain of human glycogen debranching enzyme
Trehalase            PF01204.13   512 sp|P62601|TREF_ECOLI -            549  5.1e-165  549.9   0.1   1   1  1.6e-168  6.1e-165  549.7   0.1     1   511    70   546    70   547 0.97 Trehalase
Bac_rhamnosid        PF05592.6    509 sp|P62601|TREF_ECOLI -            549   0.00055   18.2   0.0   1   1   2.1e-07   0.00079   17.7   0.0   276   355   351   438   277   451 0.79 Bacterial alpha-L-rhamnosidase
DUF346               PF03984.8     40 sp|P62601|TREF_ECOLI -            549   0.00095   18.5   0.1   1   1   7.9e-07    0.0029   17.0   0.1     7    30   273   296   270   303 0.90 Repeat of unknown function (DUF346)
Glyco_hydro_63       PF03200.11   801 sp|P62601|TREF_ECOLI -            549     0.071   10.9   0.0   1   1   2.8e-05       0.1   10.4   0.0   554   624   345   415   332   438 0.88 Mannosyl oligosaccharide glucosidase
TrkH                 PF02386.11   354 sp|P23849|TRKG_ECOLI -            485   5.2e-74  248.9  35.2   2   3   7.2e-06      0.11   11.0   0.6   267   311    72   117    58   123 0.81 Cation transport protein
TrkH                 PF02386.11   354 sp|P23849|TRKG_ECOLI -            485   5.2e-74  248.9  35.2   3   3   4.4e-78   6.5e-74  248.6  20.7     2   354   156   483   155   483 0.99 Cation transport protein
TrkH                 PF02386.11   354 sp|P0AFZ7|TRKH_ECOLI -            483   1.7e-77  260.3  25.2   2   2   3.3e-81   2.4e-77  259.8  16.2     2   354   153   481   152   481 0.99 Cation transport protein
Serpentine_r_xa      PF03383.10   153 sp|P0AFZ7|TRKH_ECOLI -            483    0.0085   15.8   1.6   2   2   2.9e-06     0.021   14.5   0.6    38    99   273   337   236   345 0.77 Caenorhabditis serpentine receptor-like protein, class xa
tRNA_U5-meth_tr      PF05958.6    352 sp|P23003|TRMA_ECOLI -            366  3.4e-187  621.3   1.3   1   1  3.6e-190  3.8e-187  621.1   1.3     1   351    10   365    10   366 0.99 tRNA (Uracil-5-)-methyltransferase
Methyltransf_4       PF02390.12   197 sp|P23003|TRMA_ECOLI -            366   5.9e-07   28.7   0.1   1   1   1.1e-09   1.1e-06   27.8   0.1    21    86   211   275   178   286 0.81 Putative methyltransferase
Methyltransf_26      PF13659.1    117 sp|P23003|TRMA_ECOLI -            366   1.7e-06   28.0   0.0   1   1   3.4e-09   3.6e-06   27.0   0.0     4    80   214   302   211   336 0.79 Methyltransferase domain
MTS                  PF05175.9    170 sp|P23003|TRMA_ECOLI -            366   1.1e-05   24.9   0.0   1   1     2e-08   2.1e-05   23.9   0.0    31    87   210   264   191   282 0.85 Methyltransferase small domain
Cons_hypoth95        PF03602.10   183 sp|P23003|TRMA_ECOLI -            366   1.4e-05   24.5   0.3   1   1     5e-08   5.3e-05   22.6   0.3    41   123   209   301   196   353 0.73 Conserved hypothetical protein 95
Methyltransf_31      PF13847.1    152 sp|P23003|TRMA_ECOLI -            366   3.6e-05   23.4   0.1   1   1   7.9e-08   8.3e-05   22.2   0.1     3    69   210   273   208   294 0.87 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P23003|TRMA_ECOLI -            366   5.6e-05   23.6   0.0   1   1   1.1e-07   0.00012   22.6   0.0     4    64   213   269   210   336 0.80 Methyltransferase domain
Methyltransf_15      PF09445.5    164 sp|P23003|TRMA_ECOLI -            366   0.00063   19.3   0.0   1   1   9.4e-07   0.00099   18.6   0.0     4    86   214   308   211   343 0.81 RNA cap guanine-N2 methyltransferase
Met_10               PF02475.11   200 sp|P23003|TRMA_ECOLI -            366   0.00067   19.2   0.0   1   1     1e-06    0.0011   18.6   0.0   106   169   215   273   207   348 0.74 Met-10+ like-protein
PrmA                 PF06325.8    295 sp|P23003|TRMA_ECOLI -            366    0.0012   18.0   0.1   1   1     2e-06    0.0021   17.2   0.1   149   223   194   271   189   278 0.76 Ribosomal protein L11 methyltransferase (PrmA)
DUF3164              PF11363.3    195 sp|P23003|TRMA_ECOLI -            366    0.0054   16.1   0.1   1   1     1e-05     0.011   15.1   0.1    89   168    69   146    54   166 0.85 Protein of unknown function (DUF3164)
Methyltransf_11      PF08241.7     95 sp|P23003|TRMA_ECOLI -            366     0.012   16.0   0.0   1   1   2.8e-05      0.03   14.8   0.0     2    53   216   269   215   277 0.86 Methyltransferase domain
RrnaAD               PF00398.15   262 sp|P23003|TRMA_ECOLI -            366     0.017   14.1   0.0   1   1   2.6e-05     0.028   13.4   0.0    30    81   210   263   186   274 0.81 Ribosomal RNA adenine dimethylase
Methyltransf_12      PF08242.7     99 sp|P23003|TRMA_ECOLI -            366      0.05   14.0   0.0   1   1   0.00012      0.12   12.8   0.0     1    57   215   269   215   292 0.89 Methyltransferase domain
Methyltransf_4       PF02390.12   197 sp|P0A8I5|TRMB_ECOLI -            239     2e-65  219.5   0.0   1   1   6.4e-69   2.4e-65  219.3   0.0     5   197    49   238    42   238 0.97 Putative methyltransferase
Methyltransf_18      PF12847.2    112 sp|P0A8I5|TRMB_ECOLI -            239   2.4e-05   24.8   0.0   2   2   3.3e-08   0.00012   22.5   0.0     5    71    66   131    62   198 0.76 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P0A8I5|TRMB_ECOLI -            239    0.0028   17.6   0.0   1   1   1.4e-06    0.0052   16.8   0.0     3   115    66   179    64   181 0.77 Methyltransferase domain
MTS                  PF05175.9    170 sp|P0A8I5|TRMB_ECOLI -            239     0.071   12.4   0.0   1   1   2.6e-05     0.095   12.0   0.0    34   152    66   190    53   207 0.73 Methyltransferase small domain
tRNA_m1G_MT          PF01746.16   186 sp|P0A873|TRMD_ECOLI -            255   5.3e-60  202.2   0.0   1   1   4.3e-64   6.3e-60  201.9   0.0     2   186    23   221    22   221 0.98 tRNA (Guanine-1)-methyltransferase
SpoU_methylase       PF00588.14   142 sp|P0AGJ2|TRMH_ECOLI -            229   5.1e-37  126.9   0.1   1   1   9.5e-41   7.1e-37  126.4   0.1     2   142    20   159    19   159 0.96 SpoU rRNA Methylase family
SpoU_methylas_C      PF12105.3     57 sp|P0AGJ2|TRMH_ECOLI -            229   1.2e-25   88.8   1.7   2   2   2.2e-29   1.6e-25   88.3   0.6     1    57   163   221   163   221 0.99 SpoU, rRNA methylase, C-terminal
SpoU_methylase       PF00588.14   142 sp|P0AE01|TRMJ_ECOLI -            246   1.4e-31  109.3   0.1   1   1     4e-35     2e-31  108.8   0.1     2   142     5   154     4   154 0.89 SpoU rRNA Methylase family
DUF531               PF04407.7    174 sp|P0AE01|TRMJ_ECOLI -            246     0.013   15.4   0.0   1   1     4e-06      0.02   14.7   0.0   117   166   104   155    75   163 0.83 Protein of unknown function (DUF531)
Methyltrn_RNA_4      PF09936.4    185 sp|P0AE01|TRMJ_ECOLI -            246     0.014   14.8   0.0   2   2   4.7e-05      0.23   10.9   0.0   106   178    75   152    55   157 0.73 SAM-dependent RNA methyltransferase
SpoU_methylase       PF00588.14   142 sp|P0AGJ7|TRML_ECOLI -            157   4.7e-34  117.2   0.0   1   1   7.2e-38   5.3e-34  117.1   0.0     1   142     1   142     1   142 0.95 SpoU rRNA Methylase family
Malate_DH            PF12434.3     28 sp|P0AGJ7|TRML_ECOLI -            157    0.0017   18.0   0.4   1   1   4.3e-07    0.0032   17.1   0.4    17    27    44    54    42    54 0.96 Malate dehydrogenase enzyme
Methyltransf_26      PF13659.1    117 sp|P31825|TRMN6_ECOLI -            245   1.3e-16   60.6   0.0   1   1   3.9e-19   2.1e-16   59.9   0.0     3   116    47   170    45   171 0.87 Methyltransferase domain
MTS                  PF05175.9    170 sp|P31825|TRMN6_ECOLI -            245   9.6e-14   51.1   0.0   1   1   2.5e-16   1.4e-13   50.6   0.0    33   145    46   174    30   191 0.81 Methyltransferase small domain
Methyltransf_18      PF12847.2    112 sp|P31825|TRMN6_ECOLI -            245   1.2e-11   45.2   0.0   1   1   3.2e-14   1.8e-11   44.6   0.0     3    84    46   130    45   169 0.79 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P31825|TRMN6_ECOLI -            245   1.2e-08   34.6   0.0   1   1   2.8e-11   1.6e-08   34.3   0.0     6   109    47   168    44   206 0.77 Methyltransferase domain
Cons_hypoth95        PF03602.10   183 sp|P31825|TRMN6_ECOLI -            245   1.3e-07   31.1   0.0   1   1   3.2e-10   1.8e-07   30.7   0.0    43   129    45   130    35   157 0.83 Conserved hypothetical protein 95
Methyltransf_3       PF01596.12   205 sp|P31825|TRMN6_ECOLI -            245   1.6e-06   27.3   0.0   1   1     4e-09   2.2e-06   26.8   0.0    26   112    26   111    13   122 0.87 O-methyltransferase
Methyltransf_25      PF13649.1    101 sp|P31825|TRMN6_ECOLI -            245   2.6e-06   27.7   0.0   1   1   6.9e-09   3.8e-06   27.1   0.0     2    74    49   125    48   163 0.79 Methyltransferase domain
UPF0020              PF01170.13   180 sp|P31825|TRMN6_ECOLI -            245     3e-06   26.9   0.0   1   1   7.4e-09     4e-06   26.5   0.0    53   117    65   126    40   161 0.79 Putative RNA methylase family UPF0020
PrmA                 PF06325.8    295 sp|P31825|TRMN6_ECOLI -            245   4.8e-06   25.9   0.1   1   1   1.2e-08   6.6e-06   25.4   0.1   163   232    46   122    38   123 0.78 Ribosomal protein L11 methyltransferase (PrmA)
PRMT5                PF05185.11   448 sp|P31825|TRMN6_ECOLI -            245   2.3e-05   23.4   0.1   1   1   5.8e-08   3.2e-05   23.0   0.1   193   264    51   121    45   122 0.91 PRMT5 arginine-N-methyltransferase
PCMT                 PF01135.14   210 sp|P31825|TRMN6_ECOLI -            245   3.2e-05   23.5   0.0   1   1   8.3e-08   4.5e-05   23.0   0.0    73   136    44   108    34   122 0.86 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_23      PF13489.1    161 sp|P31825|TRMN6_ECOLI -            245   0.00014   21.6   0.0   1   2   5.5e-06     0.003   17.2   0.0    22    85    44   122    30   123 0.65 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|P31825|TRMN6_ECOLI -            245   0.00041   20.7   0.0   1   1   1.5e-06   0.00081   19.8   0.0     1    67    49   122    49   125 0.86 Methyltransferase domain
NodS                 PF05401.6    201 sp|P31825|TRMN6_ECOLI -            245   0.00042   19.7   0.0   1   1   1.2e-06   0.00065   19.1   0.0    44   113    45   122    38   133 0.79 Nodulation protein S (NodS)
Methyltransf_10      PF05971.7    299 sp|P31825|TRMN6_ECOLI -            245   0.00044   19.4   0.0   1   1     1e-06   0.00056   19.1   0.0   103   203    45   141    32   166 0.78 Protein of unknown function (DUF890)
Met_10               PF02475.11   200 sp|P31825|TRMN6_ECOLI -            245   0.00061   19.4   0.0   1   1   1.6e-06   0.00089   18.9   0.0   105   180    48   126    42   138 0.87 Met-10+ like-protein
Methyltransf_32      PF13679.1    141 sp|P31825|TRMN6_ECOLI -            245    0.0019   17.8   0.0   1   1   4.9e-06    0.0027   17.4   0.0    26    98    45   112    38   158 0.85 Methyltransferase domain
RrnaAD               PF00398.15   262 sp|P31825|TRMN6_ECOLI -            245    0.0021   17.1   0.0   1   1   4.7e-06    0.0026   16.8   0.0    34   108    48   126    44   177 0.89 Ribosomal RNA adenine dimethylase
Methyltransf_12      PF08242.7     99 sp|P31825|TRMN6_ECOLI -            245     0.003   18.0   0.0   1   1   8.7e-06    0.0048   17.3   0.0     1    72    49   121    49   123 0.73 Methyltransferase domain
CMAS                 PF02353.15   273 sp|P31825|TRMN6_ECOLI -            245     0.013   14.5   0.0   1   1     4e-05     0.022   13.8   0.0    65   133    47   121    41   124 0.82 Mycolic acid cyclopropane synthetase
Methyltransf_4       PF02390.12   197 sp|P31825|TRMN6_ECOLI -            245     0.014   14.4   0.0   1   1   4.1e-05     0.022   13.7   0.0    22    72    47   101    10   115 0.83 Putative methyltransferase
DUF633               PF04816.7    205 sp|P31825|TRMN6_ECOLI -            245     0.022   14.1   0.0   1   1   5.3e-05     0.029   13.7   0.0     2    60    49   108    48   120 0.89 Family of unknown function (DUF633)
Methyltransf_16      PF10294.4    174 sp|P31825|TRMN6_ECOLI -            245     0.023   14.1   0.0   1   1   6.2e-05     0.034   13.5   0.0    48   126    46   121    40   132 0.72 Putative methyltransferase
Eco57I               PF07669.6    106 sp|P31825|TRMN6_ECOLI -            245     0.029   14.7   0.0   1   1     9e-05     0.049   13.9   0.0     2    22   115   135   114   184 0.74 Eco57I restriction-modification methylase
Methyltransf_24      PF13578.1    106 sp|P31825|TRMN6_ECOLI -            245     0.043   14.6   0.0   1   1   0.00014     0.076   13.8   0.0     2    74    50   120    49   130 0.80 Methyltransferase domain
Methyltransf_15      PF09445.5    164 sp|P31825|TRMN6_ECOLI -            245     0.098   12.2   0.0   1   1   0.00022      0.12   11.9   0.0     3    80    47   125    45   170 0.87 RNA cap guanine-N2 methyltransferase
PilN                 PF05137.8     78 sp|P31825|TRMN6_ECOLI -            245      0.15   11.9   0.1   1   1   0.00045      0.25   11.2   0.1    20    74    64   118    59   121 0.81 Fimbrial assembly protein (PilN)
Trp_syntA            PF00290.15   259 sp|P0A877|TRPA_ECOLI -            268  2.4e-101  337.6   0.0   1   1  1.8e-105  2.6e-101  337.4   0.0     1   258     8   266     8   267 0.99 Tryptophan synthase alpha chain
PALP                 PF00291.20   306 sp|P0A879|TRPB_ECOLI -            397   2.4e-46  158.3   0.3   1   1     2e-50   2.9e-46  158.0   0.3     4   306    53   378    50   378 0.78 Pyridoxal-phosphate dependent enzyme
IGPS                 PF00218.16   254 sp|P00909|TRPC_ECOLI -            453   9.5e-98  326.2   0.4   1   2  2.7e-101   1.3e-97  325.7   0.0     1   253     6   252     6   253 0.99 Indole-3-glycerol phosphate synthase
PRAI                 PF00697.17   197 sp|P00909|TRPC_ECOLI -            453   1.1e-59  201.2   0.0   1   1   3.5e-63   1.7e-59  200.6   0.0     1   196   258   448   258   449 0.99 N-(5'phosphoribosyl)anthranilate (PRA) isomerase
QRPTase_C            PF01729.14   169 sp|P00909|TRPC_ECOLI -            453       0.1   12.1   0.0   1   1   7.3e-05      0.36   10.3   0.0    79   144   155   227   143   243 0.73 Quinolinate phosphoribosyl transferase, C-terminal domain
Chorismate_bind      PF00425.13   257 sp|P00895|TRPE_ECOLI -            520   4.3e-81  272.0   0.0   1   1   1.3e-84   6.4e-81  271.4   0.0     2   257   242   502   241   502 0.96 chorismate binding enzyme
Anth_synt_I_N        PF04715.8    140 sp|P00895|TRPE_ECOLI -            520   3.4e-19   69.2   0.1   1   2   5.9e-22   2.9e-18   66.2   0.0     3   139    19   192    17   193 0.91 Anthranilate synthase component I, N terminal region
Flg_hook             PF02120.11    85 sp|P00895|TRPE_ECOLI -            520     0.018   14.6   0.3   2   2   1.3e-05     0.066   12.8   0.1    34    67   189   222   182   233 0.86 Flagellar hook-length control protein FliK
Glycos_transf_3      PF00591.16   253 sp|P00904|TRPGD_ECOLI -            531    4e-104  347.4   0.1   1   1  2.6e-107  6.5e-104  346.8   0.1     4   253   273   521   270   521 0.99 Glycosyl transferase family, a/b domain
GATase               PF00117.23   192 sp|P00904|TRPGD_ECOLI -            531     3e-46  157.3   0.0   1   1   1.9e-49   4.7e-46  156.6   0.0     1   189     5   187     5   190 0.96 Glutamine amidotransferase class-I
Glycos_trans_3N      PF02885.12    66 sp|P00904|TRPGD_ECOLI -            531   2.9e-18   65.2   1.0   1   1   2.8e-21   6.9e-18   64.0   0.3     1    65   199   263   199   264 0.98 Glycosyl transferase family, helical bundle domain
Peptidase_C26        PF07722.8    217 sp|P00904|TRPGD_ECOLI -            531     5e-07   29.3   0.0   1   1   4.6e-10   1.1e-06   28.2   0.0   104   217    75   172    70   172 0.87 Peptidase C26
DUF3356              PF11836.3    101 sp|P00904|TRPGD_ECOLI -            531    0.0066   16.2   2.8   1   2   8.7e-06     0.021   14.5   0.2    17    96   181   263   176   267 0.87 Protein of unknown function (DUF3356)
Pec_lyase            PF09492.5    289 sp|P00904|TRPGD_ECOLI -            531      0.11   11.6   0.6   1   1   0.00011      0.27   10.3   0.6   140   191   173   227   167   241 0.80 Pectic acid lyase
Trp_repressor        PF01371.14    88 sp|P0A881|TRPR_ECOLI -            108   4.2e-31  106.7   0.1   1   1   6.6e-35   4.9e-31  106.4   0.1     1    87    17   103    17   104 0.98 Trp repressor protein
HTH_5                PF01022.15    47 sp|P0A881|TRPR_ECOLI -            108     0.084   12.5   0.0   1   1   1.9e-05      0.14   11.8   0.0     3    32    53    82    52    84 0.88 Bacterial regulatory protein, arsR family
PseudoU_synth_1      PF01416.15   105 sp|P07649|TRUA_ECOLI -            270   2.6e-33  114.5   0.0   1   2   4.6e-17   6.8e-13   48.9   0.0     3   105    16   112    14   112 0.94 tRNA pseudouridine synthase
PseudoU_synth_1      PF01416.15   105 sp|P07649|TRUA_ECOLI -            270   2.6e-33  114.5   0.0   2   2   1.1e-21   1.6e-17   63.8   0.0     2   105   152   253   151   253 0.95 tRNA pseudouridine synthase
TruB_N               PF01509.13   149 sp|P60340|TRUB_ECOLI -            314   9.3e-58  194.6   0.0   1   1   1.7e-61   1.2e-57  194.2   0.0     1   149    33   180    33   180 0.99 TruB family pseudouridylate synthase (N terminal domain)
TruB-C_2             PF09157.6     58 sp|P60340|TRUB_ECOLI -            314   1.8e-19   69.3   0.1   1   1   5.8e-23   4.3e-19   68.1   0.1     1    58   252   309   252   309 0.97 Pseudouridine synthase II TruB, C-terminal
PseudoU_synth_2      PF00849.17   164 sp|P0AA41|TRUC_ECOLI -            260   3.7e-30  104.9   0.0   1   1   3.1e-34   4.6e-30  104.5   0.0     2   164    11   170    10   170 0.96 RNA pseudouridylate synthase
TruD                 PF01142.13   378 sp|Q57261|TRUD_ECOLI -            349  1.6e-106  356.1   0.3   1   1  7.5e-110  1.1e-105  353.4   0.3     5   378     3   337     1   337 0.96 tRNA pseudouridine synthase D (TruD)
Pyr_redox_2          PF07992.9    201 sp|P0A9P4|TRXB_ECOLI -            321   7.4e-33  114.1   0.1   1   1   9.9e-36   9.2e-33  113.8   0.1     1   199     8   291     8   293 0.92 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox            PF00070.22    80 sp|P0A9P4|TRXB_ECOLI -            321   1.7e-19   69.9   1.8   2   2   4.9e-21   4.6e-18   65.4   0.8     1    79   148   225   148   229 0.93 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P0A9P4|TRXB_ECOLI -            321   8.2e-18   65.2   0.0   1   2   5.8e-18   5.4e-15   55.9   0.0    40   200    23   179    15   181 0.80 Pyridine nucleotide-disulphide oxidoreductase
HI0933_like          PF03486.9    409 sp|P0A9P4|TRXB_ECOLI -            321   1.9e-06   26.6   0.4   1   5   0.00018      0.17   10.3   0.1     2    36     8    42     7    47 0.90 HI0933-like protein
FAD_binding_2        PF00890.19   417 sp|P0A9P4|TRXB_ECOLI -            321   4.2e-06   25.8   5.4   1   4   5.9e-06    0.0054   15.6   0.1     2    38     9    44     8    62 0.89 FAD binding domain
GIDA                 PF01134.17   392 sp|P0A9P4|TRXB_ECOLI -            321   1.4e-05   24.1   2.5   1   4   3.6e-05     0.034   13.0   0.1     2    29     9    38     8    52 0.82 Glucose inhibited division protein A
FAD_oxidored         PF12831.2    428 sp|P0A9P4|TRXB_ECOLI -            321    0.0002   20.5   0.0   1   2   9.3e-07   0.00086   18.4   0.0     2    40     9    46     8    98 0.76 FAD dependent oxidoreductase
K_oxygenase          PF13434.1    341 sp|P0A9P4|TRXB_ECOLI -            321   0.00085   18.3   0.0   1   2   1.9e-05     0.018   13.9   0.0   132   228    95   182    69   186 0.66 L-lysine 6-monooxygenase (NADPH-requiring)
NAD_Gly3P_dh_N       PF01210.18   157 sp|P0A9P4|TRXB_ECOLI -            321     0.016   14.9   0.1   2   2   0.00093      0.86    9.3   0.0     1    39   148   187   148   214 0.75 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_binding_7        PF13241.1    103 sp|P0A9P4|TRXB_ECOLI -            321     0.025   14.8   0.0   2   2   0.00048      0.45   10.8   0.0     6    41   145   182   143   252 0.73 Putative NAD(P)-binding
FMO-like             PF00743.14   532 sp|P0A9P4|TRXB_ECOLI -            321     0.031   12.4   0.0   1   1   4.9e-05     0.046   11.9   0.0   158   234   121   202    97   223 0.76 Flavin-binding monooxygenase-like
NAD_binding_8        PF13450.1     68 sp|P0A9P4|TRXB_ECOLI -            321     0.048   13.6   0.0   1   1   0.00022       0.2   11.7   0.0     1    38    11    47    11    76 0.75 NAD(P)-binding Rossmann-like domain
Thi4                 PF01946.12   230 sp|P0A9P4|TRXB_ECOLI -            321     0.052   12.6   0.5   1   2   0.00041      0.38    9.8   0.0    18    46     7    35     2    47 0.85 Thi4 family
Trp_halogenase       PF04820.9    454 sp|P0A9P4|TRXB_ECOLI -            321      0.12   10.9   0.3   1   2   0.00065       0.6    8.6   0.1     1    32     8    39     8    45 0.84 Tryptophan halogenase
Peptidase_M22        PF00814.20   268 sp|P76256|TSAB_ECOLI -            231   8.5e-29  100.8   0.1   1   2   1.5e-32   2.3e-28   99.4   0.0    23   131    28   132    26   159 0.90 Glycoprotease family
Sua5_yciO_yrdC       PF01300.13   179 sp|P45748|TSAC_ECOLI -            190   3.7e-42  143.5   0.0   1   1   2.8e-46   4.1e-42  143.4   0.0     2   178    16   189    15   190 0.92 Telomere recombination
Peptidase_M22        PF00814.20   268 sp|P05852|TSAD_ECOLI -            337  4.7e-102  341.0   0.0   1   1  1.4e-105  5.3e-102  340.8   0.0     2   268    24   307    23   307 0.98 Glycoprotease family
BcrAD_BadFG          PF01869.15   271 sp|P05852|TSAD_ECOLI -            337   0.00032   20.0   0.0   2   2   1.8e-06    0.0067   15.7   0.0   177   251   214   290   205   304 0.86 BadF/BadG/BcrA/BcrD ATPase family
CmcH_NodU            PF02543.10   360 sp|P05852|TSAD_ECOLI -            337     0.011   14.9   0.0   1   1     4e-06     0.015   14.4   0.0   131   185   228   281   209   318 0.79 Carbamoyltransferase
FGGY_C               PF02782.11   198 sp|P05852|TSAD_ECOLI -            337     0.011   15.3   0.1   1   1   4.9e-06     0.018   14.6   0.1    77   174   183   284   142   309 0.71 FGGY family of carbohydrate kinases, C-terminal domain
UPF0079              PF02367.12   123 sp|P0AF67|TSAE_ECOLI -            153   3.6e-45  152.5   0.0   1   1   2.6e-48   4.2e-45  152.3   0.0     1   121    14   134    14   136 0.98 Uncharacterised P-loop hydrolase UPF0079
RNA_helicase         PF00910.17   107 sp|P0AF67|TSAE_ECOLI -            153     0.013   15.6   0.0   1   1   1.1e-05     0.018   15.1   0.0     1    64    31    87    31   101 0.72 RNA helicase
AAA_33               PF13671.1    143 sp|P0AF67|TSAE_ECOLI -            153     0.019   14.8   0.0   1   1   1.5e-05     0.024   14.5   0.0     1    25    30    63    30   103 0.78 AAA domain
AAA_22               PF13401.1    131 sp|P0AF67|TSAE_ECOLI -            153     0.023   14.8   0.0   1   1   1.8e-05      0.03   14.4   0.0     3    29    27    53    22    91 0.77 AAA domain
AAA_23               PF13476.1    202 sp|P0AF67|TSAE_ECOLI -            153     0.034   14.4   0.0   1   1   2.1e-05     0.034   14.4   0.0    21    47    30    56     8   135 0.82 AAA domain
AAA_13               PF13166.1    712 sp|P0AF67|TSAE_ECOLI -            153     0.073   11.5   0.0   1   1   5.1e-05     0.084   11.3   0.0    15    40    27    52    16    81 0.75 AAA domain
PRK                  PF00485.13   194 sp|P0AF67|TSAE_ECOLI -            153     0.099   12.1   0.0   1   1   7.4e-05      0.12   11.8   0.0     1    33    30    65    30   101 0.72 Phosphoribulokinase / Uridine kinase family
Zeta_toxin           PF06414.7    201 sp|P0AF67|TSAE_ECOLI -            153      0.11   11.5   0.0   1   1   0.00011      0.18   10.9   0.0    17    44    29    57    15    60 0.84 Zeta toxin
NACHT                PF05729.7    166 sp|P0AF67|TSAE_ECOLI -            153      0.16   11.6   0.0   1   1   0.00013      0.22   11.1   0.0     2    28    30    56    29    74 0.86 NACHT domain
MFS_1                PF07690.11   352 sp|P60778|TSGA_ECOLI -            393   1.9e-24   86.0  56.8   1   2   7.5e-26   1.1e-21   76.9  49.5     2   326    14   320    10   324 0.84 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P60778|TSGA_ECOLI -            393   1.9e-24   86.0  56.8   2   2   1.9e-08   0.00029   19.6  10.9    69   180   275   387   272   392 0.83 Major Facilitator Superfamily
ATP_bind_3           PF01171.15   182 sp|P76055|TTCA_ECOLI -            311   1.2e-14   54.2   0.0   1   1   2.5e-18   1.9e-14   53.5   0.0     2   161    42   205    41   209 0.84 PP-loop family
PAPS_reduct          PF01507.14   174 sp|P76055|TTCA_ECOLI -            311     0.053   13.3   0.0   1   1   3.5e-05      0.26   11.0   0.0     2   156    42   208    41   212 0.70 Phosphoadenosine phosphosulfate reductase family
Fumerase_C           PF05683.7    206 sp|P0AC35|TTDB_ECOLI -            201   1.9e-48  164.3   0.0   1   1   1.5e-52   2.2e-48  164.1   0.0    31   203     5   178     1   181 0.97 Fumarase C-terminus
Fumerase             PF05681.9    271 sp|P05847|TTDA_ECOLI -            303   7.3e-81  271.2   0.0   1   1   1.1e-84   8.4e-81  271.0   0.0     1   268    14   284    14   287 0.96 Fumarate hydratase (Fumerase)
Rho_Binding          PF08912.6     69 sp|P05847|TTDA_ECOLI -            303     0.081   13.2   0.6   1   2   4.7e-05      0.35   11.2   0.2    54    65     7    18     3    20 0.90 Rho Binding
Na_sulph_symp        PF00939.14   471 sp|P39414|TTDT_ECOLI -            487  1.2e-182  608.0  40.2   1   1  8.7e-187  1.3e-182  607.9  40.2     2   468     5   485     4   487 0.99 Sodium:sulfate symporter transmembrane region
TusA                 PF01206.12    70 sp|P0A890|TUSA_ECOLI -             81   2.7e-26   90.9   0.0   1   1     4e-30     3e-26   90.8   0.0     1    70    10    79    10    79 0.98 Sulfurtransferase TusA
DUF2249              PF10006.4     69 sp|P0A890|TUSA_ECOLI -             81   7.1e-05   22.3   0.1   1   1   1.7e-08   0.00013   21.5   0.1     1    34    11    44    11    47 0.97 Uncharacterized conserved protein (DUF2249)
DsrH                 PF04077.7     88 sp|P45530|TUSB_ECOLI -             95   5.1e-30  102.9   0.0   1   1   3.8e-34   5.7e-30  102.8   0.0     1    88     7    93     7    93 0.98 DsrH like protein
DrsE                 PF02635.10   122 sp|P45531|TUSC_ECOLI -            119   3.7e-20   72.2   0.0   1   1   2.8e-24   4.1e-20   72.0   0.0     1   122     2   119     2   119 0.95 DsrE/DsrF-like family
DrsE                 PF02635.10   122 sp|P45532|TUSD_ECOLI -            128     5e-27   94.3   0.1   1   1   3.9e-31   5.8e-27   94.1   0.1     1   122     1   128     1   128 0.95 DsrE/DsrF-like family
DsrC                 PF04358.8    109 sp|P0AB18|TUSE_ECOLI -            109   2.7e-46  156.2   0.0   1   1     2e-50     3e-46  156.1   0.0     3   109     3   109     1   109 0.98 DsrC like protein
Ter                  PF05472.6    290 sp|P16525|TUS_ECOLI  -            309    4e-114  380.6   6.8   1   1    3e-118  4.5e-114  380.4   6.8     2   290     9   307     8   307 0.99 DNA replication terminus site-binding protein (Ter protein)
GTP_EFTU             PF00009.22   188 sp|P32132|TYPA_ECOLI -            607   9.9e-57  191.4   0.0   1   1   1.4e-59   1.9e-56  190.4   0.0     2   187     4   195     3   196 0.96 Elongation factor Tu GTP binding domain
EFG_C                PF00679.19    89 sp|P32132|TYPA_ECOLI -            607   2.1e-21   75.6   0.0   1   1   3.6e-24   4.8e-21   74.4   0.0     3    83   397   477   395   483 0.96 Elongation factor G C-terminus
GTP_EFTU_D2          PF03144.20    74 sp|P32132|TYPA_ECOLI -            607   7.7e-10   38.7   3.2   1   1   1.7e-12   2.3e-09   37.2   3.2     1    74   219   289   219   289 0.94 Elongation factor Tu domain 2
MMR_HSR1             PF01926.18   116 sp|P32132|TYPA_ECOLI -            607   9.7e-06   25.5   0.2   1   1   2.6e-08   3.5e-05   23.7   0.1     2   115     8   128     7   129 0.56 50S ribosome-binding GTPase
EFG_II               PF14492.1     75 sp|P32132|TYPA_ECOLI -            607   5.8e-05   22.8   0.3   1   1   1.1e-07   0.00015   21.5   0.1    21    66   331   376   326   384 0.86 Elongation Factor G, domain II
Miro                 PF08477.8    119 sp|P32132|TYPA_ECOLI -            607   7.6e-05   23.1   0.0   1   1   1.1e-07   0.00016   22.1   0.0     2    85     8   103     7   131 0.78 Miro-like protein
Septin               PF00735.13   281 sp|P32132|TYPA_ECOLI -            607   0.00097   18.2   0.1   1   1   1.2e-06    0.0016   17.5   0.1     6    77     7    82     5   104 0.70 Septin
FeoB_N               PF02421.13   156 sp|P32132|TYPA_ECOLI -            607    0.0069   15.6   0.1   2   3   0.00021      0.28   10.4   0.0    32   117    53   132    51   175 0.70 Ferrous iron transport protein B
Dynamin_N            PF00350.18   168 sp|P32132|TYPA_ECOLI -            607     0.024   14.4   0.1   1   1   0.00027      0.37   10.5   0.0    63   167    30   129    12   130 0.69 Dynamin family
SRPRB                PF09439.5    181 sp|P32132|TYPA_ECOLI -            607      0.06   12.5   0.1   1   1   0.00012      0.17   11.1   0.1     4    84     6   100     3   106 0.68 Signal recognition particle receptor beta subunit
DUF4190              PF13828.1     62 sp|P32132|TYPA_ECOLI -            607     0.093   12.2   0.4   1   1    0.0002      0.27   10.8   0.4    22    49   251   279   249   280 0.92 Domain of unknown function (DUF4190)
Glycos_transf_3      PF00591.16   253 sp|P07650|TYPH_ECOLI -            440   1.5e-50  171.9   0.6   1   2   3.1e-54   1.5e-50  171.9   0.6     2   252    79   309    78   310 0.98 Glycosyl transferase family, a/b domain
PYNP_C               PF07831.8     75 sp|P07650|TYPH_ECOLI -            440   1.7e-25   88.2   0.2   1   1   6.6e-29   3.3e-25   87.3   0.2     1    74   350   423   350   424 0.98 Pyrimidine nucleoside phosphorylase C-terminal domain
Glycos_trans_3N      PF02885.12    66 sp|P07650|TYPH_ECOLI -            440   2.6e-15   55.7   0.1   1   1   1.8e-18   9.1e-15   53.9   0.1     3    66     5    68     3    68 0.98 Glycosyl transferase family, helical bundle domain
Aminotran_1_2        PF00155.16   363 sp|P04693|TYRB_ECOLI -            397   1.2e-86  290.8   0.0   1   1   9.5e-91   1.4e-86  290.7   0.0     2   362    27   392    26   393 0.98 Aminotransferase class I and II
Trp_Tyr_perm         PF03222.8    394 sp|P0AAD4|TYRP_ECOLI -            403  8.4e-144  479.2  31.1   1   1  1.3e-147  9.5e-144  479.0  31.1     2   393     2   390     1   391 0.99 Tryptophan/tyrosine permease family
Aa_trans             PF01490.13   409 sp|P0AAD4|TYRP_ECOLI -            403   1.1e-10   40.5  21.6   1   2   1.5e-14   1.1e-10   40.5  21.6     5   248     5   237     1   239 0.81 Transmembrane amino acid transporter protein
Thymidylat_synt      PF00303.14   269 sp|P0A884|TYSY_ECOLI -            264  1.1e-123  411.4   0.0   1   1  8.5e-128  1.3e-123  411.3   0.0     2   269     2   264     1   264 0.99 Thymidylate synthase
Xan_ur_permease      PF00860.15   389 sp|Q46821|UACT_ECOLI -            482  4.6e-121  403.9  46.5   1   1  4.3e-125  6.4e-121  403.4  46.5     2   385    29   408    28   412 0.98 Permease family
UbiA                 PF01040.13   257 sp|P0AGK1|UBIA_ECOLI -            290   1.7e-40  138.8  24.7   1   1   1.5e-44   2.2e-40  138.5  24.7     2   256    26   277    25   281 0.84 UbiA prenyltransferase family
ABC1                 PF03109.11   119 sp|P0A6A0|UBIB_ECOLI -            546     2e-35  121.3   0.0   1   1   2.7e-39     4e-35  120.3   0.0     4   119   115   232   112   232 0.97 ABC1 family
Chor_lyase           PF04345.8    168 sp|P26602|UBIC_ECOLI -            165   5.6e-31  107.2   0.0   1   1     9e-35   6.7e-31  106.9   0.0    12   163    17   165    10   165 0.90 Chorismate lyase
UTRA                 PF07702.8    141 sp|P26602|UBIC_ECOLI -            165     0.042   13.4   0.0   1   2   2.1e-05      0.16   11.5   0.0     2    77    42   119    41   127 0.76 UTRA domain
UbiD                 PF01977.11   407 sp|P0AAB4|UBID_ECOLI -            497  2.6e-165  549.8   0.0   1   1    2e-169    3e-165  549.6   0.0     2   407    14   437    13   437 0.95 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
Ubie_methyltran      PF01209.13   233 sp|P0A887|UBIE_ECOLI -            251  6.4e-114  378.8   0.0   1   1  8.8e-117  7.3e-114  378.6   0.0     2   233    15   250    14   250 0.99 ubiE/COQ5 methyltransferase family
Methyltransf_31      PF13847.1    152 sp|P0A887|UBIE_ECOLI -            251   4.3e-23   81.5   0.0   1   1   7.7e-26   6.3e-23   81.0   0.0     3   113    63   179    61   229 0.81 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|P0A887|UBIE_ECOLI -            251   1.7e-21   76.5   0.1   1   1   5.2e-24   4.3e-21   75.2   0.0     1    94    68   167    68   168 0.97 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|P0A887|UBIE_ECOLI -            251   8.6e-19   67.8   0.0   1   1   1.5e-21   1.2e-18   67.3   0.0    20   159    61   233    42   235 0.86 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P0A887|UBIE_ECOLI -            251     1e-16   61.1   0.0   1   1   3.3e-19   2.7e-16   59.7   0.0     1   101    67   164    67   164 0.93 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|P0A887|UBIE_ECOLI -            251   4.4e-14   52.7   0.0   1   1   1.1e-16   9.1e-14   51.7   0.0     1    99    68   166    68   166 0.93 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P0A887|UBIE_ECOLI -            251   2.4e-13   50.6   0.0   1   1   5.2e-16   4.3e-13   49.8   0.0     2   109    64   168    63   171 0.88 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P0A887|UBIE_ECOLI -            251   4.7e-09   36.2   0.0   1   1   1.1e-11   9.3e-09   35.3   0.0     1   114    64   169    64   171 0.91 Methyltransferase domain
PCMT                 PF01135.14   210 sp|P0A887|UBIE_ECOLI -            251   4.9e-07   29.5   0.0   1   1   9.4e-10   7.7e-07   28.8   0.0    71   171    61   168    51   179 0.86 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
MTS                  PF05175.9    170 sp|P0A887|UBIE_ECOLI -            251   4.6e-06   26.1   0.0   1   1   9.8e-09   8.1e-06   25.3   0.0    31   140    63   169    53   189 0.85 Methyltransferase small domain
UPF0020              PF01170.13   180 sp|P0A887|UBIE_ECOLI -            251   5.6e-05   22.7   0.0   1   1   1.8e-07   0.00015   21.4   0.0    61   131    88   158    53   162 0.73 Putative RNA methylase family UPF0020
RrnaAD               PF00398.15   262 sp|P0A887|UBIE_ECOLI -            251   0.00026   20.1   0.0   1   1     5e-07   0.00041   19.4   0.0    24    92    57   131    47   152 0.87 Ribosomal RNA adenine dimethylase
Methyltransf_8       PF05148.10   219 sp|P0A887|UBIE_ECOLI -            251    0.0097   15.5   0.1   1   1   2.5e-05     0.021   14.4   0.0   110   161   121   173    84   190 0.84 Hypothetical methyltransferase
MetW                 PF07021.7    193 sp|P0A887|UBIE_ECOLI -            251     0.012   14.9   0.0   1   1   2.8e-05     0.023   14.0   0.0    11   102    61   160    53   170 0.76 Methionine biosynthesis protein MetW
Rsm22                PF09243.5    275 sp|P0A887|UBIE_ECOLI -            251     0.017   14.1   0.0   1   1   2.8e-05     0.023   13.7   0.0    36   122    65   152    20   170 0.87 Mitochondrial small ribosomal subunit Rsm22
DREV                 PF05219.7    265 sp|P0A887|UBIE_ECOLI -            251     0.018   13.9   0.0   1   1   3.2e-05     0.026   13.3   0.0    93   186    62   168     5   180 0.79 DREV methyltransferase
GCD14                PF08704.5    247 sp|P0A887|UBIE_ECOLI -            251     0.041   13.3   0.0   1   2   0.00023      0.19   11.1   0.0    38   106    61   129    54   178 0.84 tRNA methyltransferase complex GCD14 subunit
NNMT_PNMT_TEMT       PF01234.12   256 sp|P0A887|UBIE_ECOLI -            251     0.089   11.7   0.0   2   2     0.001      0.83    8.5   0.0   159   198   134   169    96   174 0.72 NNMT/PNMT/TEMT family
FAD_binding_3        PF01494.14   356 sp|P75728|UBIF_ECOLI -            391   5.8e-28   97.9   0.0   1   1   1.1e-30   8.1e-28   97.4   0.0     2   345     6   338     5   342 0.80 FAD binding domain
Lycopene_cycl        PF05834.7    374 sp|P75728|UBIF_ECOLI -            391   9.3e-11   41.2   5.1   1   2   4.9e-10   3.5e-07   29.4   3.4     2   143     8   170     7   201 0.85 Lycopene cyclase protein
DAO                  PF01266.19   358 sp|P75728|UBIF_ECOLI -            391   4.9e-09   35.5   1.0   1   2   5.9e-09   4.2e-06   25.9   0.2     2    34     8    40     7    90 0.91 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|P75728|UBIF_ECOLI -            391   4.9e-09   35.5   1.0   2   2     0.001      0.73    8.6   0.0   169   322   135   275   105   305 0.63 FAD dependent oxidoreductase
SE                   PF08491.5    276 sp|P75728|UBIF_ECOLI -            391   6.5e-06   25.1   0.0   1   1   2.1e-08   1.5e-05   24.0   0.0   124   217   275   368   238   390 0.87 Squalene epoxidase
Trp_halogenase       PF04820.9    454 sp|P75728|UBIF_ECOLI -            391   4.7e-05   22.2   1.8   2   2   2.6e-05     0.019   13.6   0.0   180   376   138   341   106   347 0.73 Tryptophan halogenase
NAD_binding_8        PF13450.1     68 sp|P75728|UBIF_ECOLI -            391   0.00055   19.9   1.2   1   1   2.1e-06    0.0015   18.5   1.2     1    28    10    37    10    40 0.95 NAD(P)-binding Rossmann-like domain
F420_oxidored        PF03807.12    96 sp|P75728|UBIF_ECOLI -            391    0.0023   18.3   0.2   1   1   5.9e-06    0.0042   17.4   0.2     2    32     8    35     7    61 0.78 NADP oxidoreductase coenzyme F420-dependent
UDPG_MGDP_dh_N       PF03721.9    185 sp|P75728|UBIF_ECOLI -            391    0.0032   16.8   0.7   1   1   7.3e-06    0.0051   16.2   0.7     2    31     7    36     6    40 0.92 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
NAD_binding_9        PF13454.1    156 sp|P75728|UBIF_ECOLI -            391    0.0035   17.1   0.3   1   1   2.9e-05     0.021   14.6   0.3     1   154     9   166     9   168 0.72 FAD-NAD(P)-binding
Pyr_redox_2          PF07992.9    201 sp|P75728|UBIF_ECOLI -            391    0.0041   17.0   1.1   1   1   1.1e-05     0.008   16.0   1.1     2    36     8    42     7   192 0.90 Pyridine nucleotide-disulphide oxidoreductase
3HCDH_N              PF02737.13   180 sp|P75728|UBIF_ECOLI -            391    0.0042   16.7   0.5   1   1   1.1e-05    0.0077   15.8   0.5     2    32     8    38     7    60 0.90 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Pyr_redox            PF00070.22    80 sp|P75728|UBIF_ECOLI -            391    0.0045   17.3   1.2   1   1   1.5e-05     0.011   16.1   1.2     2    31     8    37     7    44 0.94 Pyridine nucleotide-disulphide oxidoreductase
TrkA_N               PF02254.13   116 sp|P75728|UBIF_ECOLI -            391     0.015   15.3   0.0   1   1   4.2e-05      0.03   14.3   0.0     1    63     8    71     8    77 0.78 TrkA-N domain
ApbA                 PF02558.11   151 sp|P75728|UBIF_ECOLI -            391     0.015   14.7   0.2   1   1   3.5e-05     0.025   14.0   0.2     1    30     8    37     8    50 0.93 Ketopantoate reductase PanE/ApbA
NAD_Gly3P_dh_N       PF01210.18   157 sp|P75728|UBIF_ECOLI -            391     0.036   13.7   0.2   1   1   8.4e-05     0.059   13.0   0.2     2    32     8    38     7    73 0.89 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_binding_2        PF03446.10   163 sp|P75728|UBIF_ECOLI -            391     0.045   13.5   0.0   1   1   0.00013      0.09   12.6   0.0     2    34     6    38     5    66 0.86 NAD binding domain of 6-phosphogluconate dehydrogenase
Pyr_redox_3          PF13738.1    203 sp|P75728|UBIF_ECOLI -            391     0.057   13.4   0.2   1   1   0.00027      0.19   11.7   0.2     1   139     9   170     9   202 0.61 Pyridine nucleotide-disulphide oxidoreductase
Phage_holin_6        PF10746.4     66 sp|P75728|UBIF_ECOLI -            391     0.065   12.9   0.0   1   1   0.00021      0.15   11.8   0.0     8    44   154   190   147   197 0.87 Phage holin family 6
FAD_binding_2        PF00890.19   417 sp|P75728|UBIF_ECOLI -            391     0.066   12.0   1.7   1   1   0.00016      0.11   11.2   1.7     2    33     8    39     7    58 0.90 FAD binding domain
XdhC_C               PF13478.1    136 sp|P75728|UBIF_ECOLI -            391     0.085   13.1   0.1   1   1   0.00021      0.15   12.3   0.1     2    32     9    39     8    99 0.82 XdhC Rossmann domain
Methyltransf_23      PF13489.1    161 sp|P17993|UBIG_ECOLI -            240   6.3e-25   87.7   0.0   1   1     1e-27     8e-25   87.4   0.0    23   121    57   170    19   210 0.80 Methyltransferase domain
Methyltransf_31      PF13847.1    152 sp|P17993|UBIG_ECOLI -            240   8.4e-20   70.9   0.0   1   1   1.3e-22     1e-19   70.6   0.0     4   112    57   161    56   212 0.88 Methyltransferase domain
Methyltransf_11      PF08241.7     95 sp|P17993|UBIG_ECOLI -            240   2.6e-19   69.5   0.1   1   1     5e-22   3.9e-19   68.9   0.1     1    95    61   157    61   157 0.96 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|P17993|UBIG_ECOLI -            240   3.6e-14   53.0   0.0   1   1   7.3e-17   5.7e-14   52.3   0.0     1    98    61   154    61   155 0.84 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P17993|UBIG_ECOLI -            240   3.3e-13   50.2   0.0   1   1   6.5e-16   5.1e-13   49.5   0.0     2   110    57   158    57   160 0.90 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P17993|UBIG_ECOLI -            240   4.5e-12   46.2   0.1   1   1   8.8e-15   6.9e-12   45.6   0.1     1   101    60   153    60   153 0.92 Methyltransferase domain
Ubie_methyltran      PF01209.13   233 sp|P17993|UBIG_ECOLI -            240   1.1e-09   37.7   0.0   1   1   1.7e-12   1.3e-09   37.5   0.0    38   151    47   157    14   183 0.87 ubiE/COQ5 methyltransferase family
Methyltransf_26      PF13659.1    117 sp|P17993|UBIG_ECOLI -            240   3.7e-09   36.6   0.1   1   1   1.1e-11   8.5e-09   35.4   0.1     1   115    57   159    57   161 0.89 Methyltransferase domain
CMAS                 PF02353.15   273 sp|P17993|UBIG_ECOLI -            240   2.2e-08   33.5   0.0   1   1   3.5e-11   2.7e-08   33.2   0.0    63   193    57   184    37   216 0.81 Mycolic acid cyclopropane synthetase
NodS                 PF05401.6    201 sp|P17993|UBIG_ECOLI -            240   7.1e-08   32.0   0.0   1   1   1.1e-10   8.6e-08   31.8   0.0    46   175    59   188    14   196 0.83 Nodulation protein S (NodS)
MTS                  PF05175.9    170 sp|P17993|UBIG_ECOLI -            240   6.1e-07   28.9   0.0   1   1   1.1e-09   8.7e-07   28.4   0.0    32   104    57   128    47   171 0.89 Methyltransferase small domain
Methyltransf_9       PF08003.6    315 sp|P17993|UBIG_ECOLI -            240   9.2e-06   24.5   0.0   1   1   1.5e-08   1.2e-05   24.1   0.0   114   229    55   169    46   204 0.80 Protein of unknown function (DUF1698)
PrmA                 PF06325.8    295 sp|P17993|UBIG_ECOLI -            240   1.9e-05   23.9   0.0   1   1   3.4e-08   2.6e-05   23.4   0.0   162   258    57   158    51   175 0.79 Ribosomal protein L11 methyltransferase (PrmA)
MetW                 PF07021.7    193 sp|P17993|UBIG_ECOLI -            240   0.00062   19.2   0.1   1   1   1.3e-06   0.00099   18.5   0.1    15    97    58   144    55   155 0.79 Methionine biosynthesis protein MetW
Methyltransf_32      PF13679.1    141 sp|P17993|UBIG_ECOLI -            240     0.048   13.3   0.1   1   1   8.2e-05     0.064   12.9   0.1    27   100    58   123    54   216 0.75 Methyltransferase domain
TPMT                 PF05724.6    218 sp|P17993|UBIG_ECOLI -            240     0.058   12.8   0.0   1   1   0.00016      0.12   11.7   0.0    19    71    37    90    23   130 0.75 Thiopurine S-methyltransferase (TPMT)
DREV                 PF05219.7    265 sp|P17993|UBIG_ECOLI -            240     0.081   11.7   0.0   1   1   0.00025      0.19   10.5   0.0    94   186    56   157    43   162 0.69 DREV methyltransferase
TehB                 PF03848.9    192 sp|P17993|UBIG_ECOLI -            240     0.081   12.0   0.0   1   1   0.00015      0.11   11.5   0.0    32    99    58   127    47   159 0.83 Tellurite resistance protein TehB
FAD_binding_3        PF01494.14   356 sp|P25534|UBIH_ECOLI -            392   1.1e-23   83.8   3.9   1   1   1.2e-26   1.4e-23   83.5   3.9     3   345     2   336     1   345 0.77 FAD binding domain
Lycopene_cycl        PF05834.7    374 sp|P25534|UBIH_ECOLI -            392   3.3e-09   36.1   2.8   1   3   7.4e-05     0.084   11.7   0.2     2    34     3    36     2    43 0.84 Lycopene cyclase protein
Lycopene_cycl        PF05834.7    374 sp|P25534|UBIH_ECOLI -            392   3.3e-09   36.1   2.8   3   3   5.6e-06    0.0064   15.4   0.0   225   304   248   329   232   342 0.82 Lycopene cyclase protein
DAO                  PF01266.19   358 sp|P25534|UBIH_ECOLI -            392   1.3e-06   27.5   8.5   1   2   2.7e-06    0.0031   16.4   2.3     2    37     3    41     2   108 0.74 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|P25534|UBIH_ECOLI -            392   1.3e-06   27.5   8.5   2   2   9.3e-06     0.011   14.7   0.6   155   233   117   194   101   234 0.82 FAD dependent oxidoreductase
Trp_halogenase       PF04820.9    454 sp|P25534|UBIH_ECOLI -            392   3.8e-05   22.5   3.0   1   2   1.4e-05     0.016   13.8   0.3     2    34     3    35     2    40 0.94 Tryptophan halogenase
Trp_halogenase       PF04820.9    454 sp|P25534|UBIH_ECOLI -            392   3.8e-05   22.5   3.0   2   2   0.00039      0.44    9.1   0.2   181   358   137   321   109   339 0.66 Tryptophan halogenase
SE                   PF08491.5    276 sp|P25534|UBIH_ECOLI -            392    0.0016   17.3   0.0   1   1     2e-06    0.0023   16.7   0.0   122   187   271   336   227   361 0.74 Squalene epoxidase
NAD_binding_9        PF13454.1    156 sp|P25534|UBIH_ECOLI -            392    0.0022   17.7   1.7   1   2    0.0004      0.45   10.2   0.1     1    36     4    37     4    46 0.88 FAD-NAD(P)-binding
NAD_binding_8        PF13450.1     68 sp|P25534|UBIH_ECOLI -            392    0.0055   16.7   0.3   1   1   1.7e-05     0.019   14.9   0.3     1    27     5    34     5    52 0.78 NAD(P)-binding Rossmann-like domain
Pyr_redox_2          PF07992.9    201 sp|P25534|UBIH_ECOLI -            392     0.019   14.8   0.8   1   1   8.2e-05     0.093   12.5   0.8     1    33     2    37     2   194 0.72 Pyridine nucleotide-disulphide oxidoreductase
GIDA                 PF01134.17   392 sp|P25534|UBIH_ECOLI -            392     0.045   12.6   3.4   1   1   0.00011      0.12   11.2   3.4     2   159     3   173     2   206 0.61 Glucose inhibited division protein A
FAD_binding_2        PF00890.19   417 sp|P25534|UBIH_ECOLI -            392     0.052   12.3   6.6   1   1   0.00018      0.21   10.4   6.4     2   155     3   198     2   240 0.51 FAD binding domain
DUF2924              PF11149.3    136 sp|P25534|UBIH_ECOLI -            392     0.074   13.0   0.1   2   2   0.00043      0.49   10.4   0.0    79   132   145   201   120   202 0.75 Protein of unknown function (DUF2924)
FAD_binding_3        PF01494.14   356 sp|P25535|UBII_ECOLI -            400   1.3e-31  109.9   0.4   1   1   3.7e-34   3.7e-31  108.4   0.4     2   351     4   345     3   349 0.77 FAD binding domain
Lycopene_cycl        PF05834.7    374 sp|P25535|UBII_ECOLI -            400   1.6e-07   30.6   6.3   1   1   1.2e-07   0.00012   21.1   6.3     1   308     5   339     5   357 0.69 Lycopene cyclase protein
DAO                  PF01266.19   358 sp|P25535|UBII_ECOLI -            400   8.4e-06   24.9   5.3   1   2   3.5e-08   3.5e-05   22.8   3.5     1    31     5    35     5    44 0.94 FAD dependent oxidoreductase
Trp_halogenase       PF04820.9    454 sp|P25535|UBII_ECOLI -            400   3.8e-05   22.5   1.7   2   2   9.7e-07   0.00096   17.8   0.0   187   352   144   318   116   342 0.76 Tryptophan halogenase
NAD_binding_8        PF13450.1     68 sp|P25535|UBII_ECOLI -            400   0.00012   21.9   1.9   1   1   3.3e-07   0.00033   20.6   1.9     1    28     8    35     8    37 0.97 NAD(P)-binding Rossmann-like domain
SE                   PF08491.5    276 sp|P25535|UBII_ECOLI -            400   0.00017   20.5   0.0   1   1   3.2e-07   0.00031   19.6   0.0   125   216   277   368   263   392 0.84 Squalene epoxidase
Thi4                 PF01946.12   230 sp|P25535|UBII_ECOLI -            400   0.00021   20.4   0.2   1   2   1.7e-06    0.0017   17.4   0.3    17    50     3    36     1    41 0.94 Thi4 family
Pyr_redox            PF00070.22    80 sp|P25535|UBII_ECOLI -            400   0.00096   19.5   0.2   1   1   2.5e-06    0.0024   18.2   0.2     2    31     6    35     5    66 0.88 Pyridine nucleotide-disulphide oxidoreductase
FAD_binding_2        PF00890.19   417 sp|P25535|UBII_ECOLI -            400    0.0027   16.6   3.4   1   1     5e-06    0.0049   15.7   3.4     1    31     5    35     5    44 0.93 FAD binding domain
Pyr_redox_2          PF07992.9    201 sp|P25535|UBII_ECOLI -            400     0.004   17.0   0.1   1   1   8.3e-06    0.0082   16.0   0.1     1    31     5    35     5    92 0.86 Pyridine nucleotide-disulphide oxidoreductase
IlvN                 PF07991.7    165 sp|P25535|UBII_ECOLI -            400      0.09   12.1   0.1   1   1   0.00025      0.25   10.7   0.1     3    42     2    41     1    60 0.76 Acetohydroxy acid isomeroreductase, catalytic domain
FAD_oxidored         PF12831.2    428 sp|P25535|UBII_ECOLI -            400     0.094   11.7   0.1   1   1   0.00011      0.11   11.5   0.1     1   143     5   161     5   210 0.70 FAD dependent oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|P25535|UBII_ECOLI -            400      0.11   12.5   0.2   1   1   0.00022      0.22   11.5   0.2     1    30     7    35     7    65 0.89 Pyridine nucleotide-disulphide oxidoreductase
3HCDH_N              PF02737.13   180 sp|P25535|UBII_ECOLI -            400      0.15   11.7   0.1   1   1   0.00025      0.25   11.0   0.1     2    44     6    50     5    76 0.75 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
HI0933_like          PF03486.9    409 sp|P25535|UBII_ECOLI -            400      0.15   10.5   2.0   1   2    0.0006       0.6    8.5   1.2     2    32     5    35     4    39 0.94 HI0933-like protein
SCP2                 PF02036.12   102 sp|P0ADP7|UBIJ_ECOLI -            201   2.6e-20   72.5   0.0   1   1   5.4e-24     4e-20   72.0   0.0     1   101    15   112    15   113 0.97 SCP-2 sterol transfer family
Alkyl_sulf_C         PF14864.1    125 sp|P0ADP7|UBIJ_ECOLI -            201     0.028   14.3   0.0   1   1   5.6e-06     0.042   13.8   0.0    65   115    65   114    49   120 0.86 Alkyl sulfatase C-terminal
Flavoprotein         PF02441.14   129 sp|P0AG03|UBIX_ECOLI -            189     2e-27   95.4   0.0   1   1   3.6e-31   2.7e-27   94.9   0.0     1   122     2   127     2   132 0.91 Flavoprotein
CTP_transf_2         PF01467.21   157 sp|P0AG03|UBIX_ECOLI -            189     0.085   12.9   0.1   1   1   2.1e-05      0.16   12.0   0.1     8    41   126   156   125   170 0.81 Cytidylyltransferase
adh_short            PF00106.20   167 sp|P37440|UCPA_ECOLI -            263   2.4e-37  128.4   0.3   1   1   1.8e-40     3e-37  128.1   0.3     1   166     7   173     7   174 0.95 short chain dehydrogenase
adh_short_C2         PF13561.1    241 sp|P37440|UCPA_ECOLI -            263   2.7e-32  112.4   0.0   1   1   1.9e-35   3.1e-32  112.2   0.0     1   240    13   253    13   254 0.90 Enoyl-(Acyl carrier protein) reductase
KR                   PF08659.5    181 sp|P37440|UCPA_ECOLI -            263   3.2e-19   69.2   0.1   1   1   2.6e-22   4.3e-19   68.8   0.1     2   157     8   163     7   186 0.91 KR domain
NAD_binding_10       PF13460.1    183 sp|P37440|UCPA_ECOLI -            263    0.0015   18.5   0.1   1   1   1.8e-06    0.0029   17.6   0.1     2   152    10   194    10   223 0.73 NADH(P)-binding
ACT                  PF01842.20    66 sp|P37440|UCPA_ECOLI -            263      0.02   14.3   0.1   1   1   3.8e-05     0.063   12.7   0.0    17    64    22    76    21    78 0.88 ACT domain
Saccharop_dh         PF03435.13   386 sp|P37440|UCPA_ECOLI -            263     0.026   13.5   0.1   1   1   2.8e-05     0.046   12.7   0.1     3    73    11    88     9    95 0.85 Saccharopine dehydrogenase
3HCDH_N              PF02737.13   180 sp|P37440|UCPA_ECOLI -            263     0.073   12.7   0.0   1   1   9.5e-05      0.16   11.6   0.0    10    43    18    51    10    86 0.78 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
3Beta_HSD            PF01073.14   280 sp|P37440|UCPA_ECOLI -            263     0.076   11.7   0.8   1   1   5.3e-05     0.087   11.5   0.1     1   106    10   127    10   167 0.78 3-beta hydroxysteroid dehydrogenase/isomerase family
PD-C2-AF1            PF09310.5    256 sp|P37440|UCPA_ECOLI -            263     0.095   11.8   0.0   1   1     8e-05      0.13   11.3   0.0    25   109   123   207   114   223 0.81 POU domain, class 2, associating factor 1
UDPG_MGDP_dh_N       PF03721.9    185 sp|P76373|UDG_ECOLI  -            388   2.7e-40  137.7   0.0   1   1   2.7e-43   4.4e-40  137.0   0.0     1   182     1   170     1   175 0.93 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh         PF00984.14    96 sp|P76373|UDG_ECOLI  -            388   8.3e-27   93.2   0.0   1   1   1.3e-29   2.2e-26   91.9   0.0     2    94   191   281   190   283 0.92 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C       PF03720.10   106 sp|P76373|UDG_ECOLI  -            388   1.4e-10   41.2   0.5   2   2   1.4e-11   2.3e-08   34.1   0.1     2    82   301   375   300   384 0.89 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
F420_oxidored        PF03807.12    96 sp|P76373|UDG_ECOLI  -            388    0.0035   17.7   0.1   1   3   0.00037       0.6   10.5   0.0     2    73     3    85     2   105 0.86 NADP oxidoreductase coenzyme F420-dependent
3HCDH_N              PF02737.13   180 sp|P76373|UDG_ECOLI  -            388    0.0039   16.8   0.0   1   2   9.9e-06     0.016   14.8   0.0     1    99     2    94     2   104 0.80 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
NAD_Gly3P_dh_N       PF01210.18   157 sp|P76373|UDG_ECOLI  -            388    0.0045   16.7   0.1   1   1   8.4e-06     0.014   15.1   0.0     1    80     2    84     2   118 0.83 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
Glyco_hydro_4        PF02056.11   183 sp|P76373|UDG_ECOLI  -            388     0.024   13.9   0.8   1   2   7.3e-05      0.12   11.6   0.1    55    81    55    81     2    91 0.75 Family 4 glycosyl hydrolase
ApbA                 PF02558.11   151 sp|P76373|UDG_ECOLI  -            388     0.032   13.6   0.0   1   1   3.9e-05     0.064   12.6   0.0     1    77     3    83     3    89 0.91 Ketopantoate reductase PanE/ApbA
PNP_UDP_1            PF01048.15   234 sp|P12758|UDP_ECOLI  -            253   1.4e-41  142.0   1.5   1   1   1.1e-45   1.6e-41  141.8   1.5     2   226    21   246    20   253 0.85 Phosphorylase superfamily
BPD_transp_1         PF00528.17   185 sp|P10905|UGPA_ECOLI -            295   4.4e-20   71.9  20.8   2   2   2.9e-24   4.4e-20   71.9  20.8     3   184    88   293    86   294 0.90 Binding-protein-dependent transport system inner membrane component
SBP_bac_8            PF13416.1    281 sp|P0AG80|UGPB_ECOLI -            438   1.9e-45  155.7  14.1   1   1   4.6e-49   2.3e-45  155.5  14.1     2   278    44   368    43   371 0.79 Bacterial extracellular solute-binding protein
SBP_bac_1            PF01547.20   315 sp|P0AG80|UGPB_ECOLI -            438   1.2e-38  133.6  13.0   1   1   3.2e-42   1.6e-38  133.2  13.0    10   314    41   337    34   338 0.87 Bacterial extracellular solute-binding protein
SBP_bac_6            PF13343.1    242 sp|P0AG80|UGPB_ECOLI -            438    0.0005   19.4   0.1   1   2     9e-05      0.44    9.8   0.0    47    80   134   174    87   179 0.81 Bacterial extracellular solute-binding protein
ABC_tran             PF00005.22   137 sp|P10907|UGPC_ECOLI -            356   2.4e-31  108.8   0.0   1   1   7.4e-34   3.9e-31  108.1   0.0     2   136    21   162    20   163 0.93 ABC transporter
TOBE_2               PF08402.5     75 sp|P10907|UGPC_ECOLI -            356   4.1e-09   36.3   0.1   1   1   3.3e-11   1.7e-08   34.2   0.0     1    75   278   348   278   348 0.92 TOBE domain
AAA_21               PF13304.1    303 sp|P10907|UGPC_ECOLI -            356   7.1e-07   29.4   0.0   1   2   6.6e-05     0.035   14.0   0.0     1    23    32    54    32    74 0.81 AAA domain
AAA_21               PF13304.1    303 sp|P10907|UGPC_ECOLI -            356   7.1e-07   29.4   0.0   2   2   9.9e-05     0.052   13.4   0.0   223   280   121   175    64   197 0.76 AAA domain
DUF258               PF03193.11   161 sp|P10907|UGPC_ECOLI -            356   6.4e-05   22.2   0.0   1   1   2.1e-07   0.00011   21.3   0.0    15    67     8    62     1    76 0.77 Protein of unknown function, DUF258
AAA_33               PF13671.1    143 sp|P10907|UGPC_ECOLI -            356   8.8e-05   22.4   0.0   1   1     4e-07   0.00021   21.1   0.0     2    40    33    69    32   188 0.78 AAA domain
AAA_16               PF13191.1    185 sp|P10907|UGPC_ECOLI -            356   0.00074   19.5   1.0   1   1   6.6e-06    0.0035   17.3   1.0    23    63    29    70    20   207 0.60 AAA ATPase domain
AAA_17               PF13207.1    121 sp|P10907|UGPC_ECOLI -            356   0.00098   19.9   0.0   1   1   9.4e-06     0.005   17.6   0.0     2    46    33    78    32   195 0.67 AAA domain
Rad17                PF03215.10   519 sp|P10907|UGPC_ECOLI -            356    0.0033   16.1   0.0   1   1   8.1e-06    0.0043   15.8   0.0    36    88    21    74     8   113 0.78 Rad17 cell cycle checkpoint protein
AAA_22               PF13401.1    131 sp|P10907|UGPC_ECOLI -            356    0.0043   17.1   0.0   1   1     2e-05     0.011   15.9   0.0     4    26    30    52    26    92 0.83 AAA domain
SMC_N                PF02463.14   220 sp|P10907|UGPC_ECOLI -            356    0.0055   15.9   0.0   1   1   0.00013     0.069   12.3   0.0    23   191    29   185    11   214 0.64 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P10907|UGPC_ECOLI -            356     0.012   15.0   0.0   1   1   5.1e-05     0.027   13.9   0.0    18    40    26    47    18    51 0.83 P-loop containing region of AAA domain
Mg_chelatase         PF01078.16   207 sp|P10907|UGPC_ECOLI -            356     0.014   14.5   0.0   1   1   4.5e-05     0.024   13.8   0.0     7    47    15    55    10   119 0.77 Magnesium chelatase, subunit ChlI
NB-ARC               PF00931.17   287 sp|P10907|UGPC_ECOLI -            356     0.014   14.2   0.0   1   1   5.3e-05     0.028   13.2   0.0     6    41    17    52    14    74 0.85 NB-ARC domain
AAA_10               PF12846.2    304 sp|P10907|UGPC_ECOLI -            356     0.019   14.4   0.0   1   1     5e-05     0.026   13.9   0.0     4    34    33    63    31   149 0.85 AAA-like domain
NACHT                PF05729.7    166 sp|P10907|UGPC_ECOLI -            356     0.021   14.4   0.8   1   1   0.00011      0.06   12.9   0.0     3    21    33    51    31    56 0.90 NACHT domain
Miro                 PF08477.8    119 sp|P10907|UGPC_ECOLI -            356     0.024   15.1   0.0   1   1   9.3e-05     0.049   14.1   0.0     2    26    33    64    33   114 0.78 Miro-like protein
AAA_25               PF13481.1    194 sp|P10907|UGPC_ECOLI -            356     0.027   13.8   0.1   1   1   0.00018     0.096   12.0   0.0    30    50    27    47     6    81 0.76 AAA domain
AAA                  PF00004.24   132 sp|P10907|UGPC_ECOLI -            356     0.029   14.5   0.1   1   1   0.00017     0.089   12.9   0.1     2    21    34    53    33   144 0.81 ATPase family associated with various cellular activities (AAA)
Arch_ATPase          PF01637.13   234 sp|P10907|UGPC_ECOLI -            356     0.033   13.8   0.0   1   1   9.1e-05     0.048   13.3   0.0    21    58    31    67    22   126 0.77 Archaeal ATPase
AAA_28               PF13521.1    163 sp|P10907|UGPC_ECOLI -            356     0.036   14.0   0.0   1   1   0.00017      0.09   12.7   0.0     2    21    33    52    32    72 0.83 AAA domain
AAA_5                PF07728.9    139 sp|P10907|UGPC_ECOLI -            356     0.056   13.1   0.5   1   1   0.00068      0.36   10.5   0.0     3    20    34    51    33    73 0.89 AAA domain (dynein-related subfamily)
AAA_14               PF13173.1    128 sp|P10907|UGPC_ECOLI -            356     0.068   13.0   0.0   1   1   0.00028      0.15   11.9   0.0     3    23    31    51    29    88 0.81 AAA domain
RNA_helicase         PF00910.17   107 sp|P10907|UGPC_ECOLI -            356     0.071   13.2   0.0   1   1   0.00058      0.31   11.2   0.0     1    17    33    49    33    72 0.86 RNA helicase
Zeta_toxin           PF06414.7    201 sp|P10907|UGPC_ECOLI -            356     0.099   11.7   0.0   1   1    0.0004      0.21   10.6   0.0    18    38    32    52    21    73 0.87 Zeta toxin
MobB                 PF03205.9    140 sp|P10907|UGPC_ECOLI -            356       0.1   12.3   0.0   1   1   0.00042      0.22   11.2   0.0     3    21    33    51    31    55 0.90 Molybdopterin guanine dinucleotide synthesis protein B
AAA_18               PF13238.1    129 sp|P10907|UGPC_ECOLI -            356      0.17   12.2   0.1   1   1   0.00066      0.35   11.1   0.1     1    42    33    74    33   188 0.84 AAA domain
BPD_transp_1         PF00528.17   185 sp|P10906|UGPE_ECOLI -            281   1.9e-22   79.7  18.5   2   2   1.3e-26   1.9e-22   79.7  18.5     3   183    93   276    91   278 0.94 Binding-protein-dependent transport system inner membrane component
GDPD                 PF03009.12   256 sp|P10908|UGPQ_ECOLI -            247   1.9e-45  155.3   0.0   1   1     3e-49   2.2e-45  155.1   0.0     1   255    12   238    12   239 0.96 Glycerophosphoryl diester phosphodiesterase family
GDPD_2               PF13653.1     30 sp|P10908|UGPQ_ECOLI -            247    0.0014   18.7   0.1   2   2   7.8e-07    0.0058   16.7   0.0     2    27   210   235   209   238 0.93 Glycerophosphoryl diester phosphodiesterase family
MFS_1                PF07690.11   352 sp|P09836|UHPC_ECOLI -            439   4.5e-49  167.0  43.1   1   2   9.1e-53   4.5e-49  167.0  43.1     1   351    35   396    35   397 0.89 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P09836|UHPC_ECOLI -            439   4.5e-49  167.0  43.1   2   2   3.5e-06     0.017   13.8   8.0   107   172   366   431   363   439 0.84 Major Facilitator Superfamily
DUF1228              PF06779.9     85 sp|P09836|UHPC_ECOLI -            439   2.6e-05   24.1   1.5   1   4   5.3e-09   2.6e-05   24.1   1.5     7    84    45   122    38   123 0.94 Protein of unknown function (DUF1228)
DUF1614              PF07758.6    176 sp|P09836|UHPC_ECOLI -            439     0.038   13.7   0.2   2   3   7.6e-06     0.038   13.7   0.2    44    84   162   197   156   214 0.64 Protein of unknown function (DUF1614)
MFS_1                PF07690.11   352 sp|P0AGC0|UHPT_ECOLI -            463   5.2e-33  114.2  29.5   1   2   3.5e-37   5.2e-33  114.2  29.5     1   346    35   397    35   403 0.83 Major Facilitator Superfamily
OprD                 PF03573.8    391 sp|Q47706|UIDC_ECOLI -            421   6.3e-07   28.5   1.2   1   1   1.3e-10   1.9e-06   26.9   1.2    18   371    42   395    26   418 0.68 outer membrane porin, OprD family
MFS_2                PF13347.1    428 sp|P0CE44|UIDB_ECOLI -            457  1.3e-108  363.1  38.4   1   1    2e-112  1.5e-108  362.9  38.4     3   428    10   431     8   431 0.96 MFS/sugar transport protein
MFS_1                PF07690.11   352 sp|P0CE44|UIDB_ECOLI -            457   2.7e-12   46.0  50.6   1   2   7.2e-16   5.3e-12   45.1  43.0    12   350    25   377    18   379 0.82 Major Facilitator Superfamily
EIIC-GAT             PF03611.9    415 sp|P39301|ULAA_ECOLI -            465  9.2e-131  436.4  44.7   1   1  1.2e-134  9.2e-131  436.4  44.7     1   395    12   407    12   427 0.97 PTS system sugar-specific permease component
Tweety               PF04906.8    406 sp|P39301|ULAA_ECOLI -            465     0.022   13.1   2.7   1   1   5.5e-06     0.041   12.3   2.7   147   227    62   147    25   169 0.77 Tweety
OMPdecase            PF00215.19   226 sp|P39304|ULAD_ECOLI -            216   8.6e-31  107.0   0.5   1   1   6.6e-35   9.7e-31  106.9   0.5     2   225     5   206     4   207 0.94 Orotidine 5'-phosphate decarboxylase / HUMPS family
AP_endonuc_2         PF01261.19   213 sp|P39305|ULAE_ECOLI -            284   1.4e-29  102.9   0.0   1   2   4.7e-33   2.3e-29  102.2   0.0     1   212    25   229    25   230 0.97 Xylose isomerase-like TIM barrel
Radical_SAM          PF04055.16   166 sp|P39305|ULAE_ECOLI -            284    0.0064   16.6   0.0   1   2   4.1e-05       0.2   11.8   0.0    91   144    23    71    13    81 0.86 Radical SAM superfamily
HTH_Tnp_1            PF01527.15    76 sp|P39305|ULAE_ECOLI -            284     0.044   13.7   0.1   1   2   6.3e-05      0.31   11.0   0.0     6    31    51    76    47    79 0.90 Transposase
Aldolase_II          PF00596.16   184 sp|P39306|ULAF_ECOLI -            228   9.9e-46  155.6   0.4   1   1   8.3e-50   1.2e-45  155.3   0.4     2   183     7   193     6   194 0.88 Class II Aldolase and Adducin N-terminal domain
Lactamase_B_2        PF12706.2    194 sp|P39300|ULAG_ECOLI -            354   2.4e-24   85.9   0.3   1   1   6.1e-28     3e-24   85.6   0.3     2   194    57   282    56   282 0.80 Beta-lactamase superfamily domain
Lactamase_B_3        PF13483.1    163 sp|P39300|ULAG_ECOLI -            354   5.4e-17   61.9   0.1   1   1   1.5e-20   7.6e-17   61.4   0.1     4   163    42   281    40   281 0.86 Beta-lactamase superfamily domain
Lactamase_B          PF00753.22   194 sp|P39300|ULAG_ECOLI -            354   0.00056   19.6   0.6   1   2   9.3e-06     0.046   13.3   0.1    39    57   105   123    82   127 0.90 Metallo-beta-lactamase superfamily
IMS                  PF00817.15   149 sp|P04152|UMUC_ECOLI -            422     3e-39  134.2   0.0   1   1   3.7e-42   7.9e-39  132.8   0.0     1   148     5   150     5   151 0.96 impB/mucB/samB family
DUF4113              PF13438.1     52 sp|P04152|UMUC_ECOLI -            422   5.6e-24   83.4   0.4   1   1   7.4e-27   1.6e-23   82.0   0.4     1    52   370   421   370   421 0.98 Domain of unknown function (DUF4113)
IMS_C                PF11799.3    127 sp|P04152|UMUC_ECOLI -            422   9.3e-12   44.9   0.0   1   1   1.3e-14   2.8e-11   43.4   0.0    10   127   243   361   234   361 0.92 impB/mucB/samB family C-terminal domain
IMS_HHH              PF11798.3     32 sp|P04152|UMUC_ECOLI -            422   1.4e-07   31.0   0.0   1   1   1.9e-10   4.1e-07   29.6   0.0     4    32   172   200   169   200 0.92 IMS family HHH motif
DNA_pol_lambd_f      PF10391.4     52 sp|P04152|UMUC_ECOLI -            422    0.0016   17.9   0.3   2   2   6.9e-06     0.015   14.8   0.1     6    31   183   208   181   218 0.88 Fingers domain of DNA polymerase lambda
HHH_5                PF14520.1     60 sp|P04152|UMUC_ECOLI -            422     0.025   14.7   0.1   1   1   5.4e-05      0.11   12.6   0.1     9    37   183   211   169   230 0.87 Helix-hairpin-helix domain
DUF4332              PF14229.1    122 sp|P04152|UMUC_ECOLI -            422     0.063   13.2   0.1   1   1   6.7e-05      0.14   12.1   0.1    12    85   135   211   127   231 0.85 Domain of unknown function (DUF4332)
Peptidase_S24        PF00717.18    70 sp|P0AG11|UMUD_ECOLI -            139   1.4e-13   50.3   0.0   1   1   1.4e-17     2e-13   49.7   0.0     2    68    56   120    55   122 0.91 Peptidase S24-like
UDG                  PF03167.14   152 sp|P12295|UNG_ECOLI  -            229   3.1e-30  104.6   0.0   1   1     3e-34   4.5e-30  104.1   0.0     6   152    54   211    50   211 0.96 Uracil DNA glycosylase superfamily
BacA                 PF02673.13   259 sp|P60932|UPPP_ECOLI -            273   1.8e-91  305.9  14.2   1   1   1.4e-95   2.1e-91  305.7  14.2     2   258    10   267     9   268 0.96 Bacitracin resistance protein BacA
Prenyltransf         PF01255.14   223 sp|P60472|UPPS_ECOLI -            253   7.4e-82  273.7   0.0   1   1   1.1e-85   8.5e-82  273.6   0.0     1   222    24   244    24   245 0.99 Putative undecaprenyl diphosphate synthase
Glyco_hydro_97       PF10566.4    273 sp|P60472|UPPS_ECOLI -            253     0.065   12.3   0.0   1   1   1.2e-05     0.085   11.9   0.0    15    59    31    81    25   129 0.73 Glycoside hydrolase 97
UPRTase              PF14681.1    207 sp|P0A8F0|UPP_ECOLI  -            208   1.4e-65  220.3   0.0   1   1   5.4e-69   1.6e-65  220.1   0.0     3   207     7   207     4   207 0.98 Uracil phosphoribosyltransferase
Pribosyltran         PF00156.22   125 sp|P0A8F0|UPP_ECOLI  -            208   7.9e-16   57.9   0.2   1   1   3.7e-19   1.1e-15   57.4   0.2    21   125    63   160    41   160 0.93 Phosphoribosyl transferase domain
Pribosyl_synth       PF14572.1    184 sp|P0A8F0|UPP_ECOLI  -            208     0.044   13.5   0.1   1   1   2.5e-05     0.074   12.8   0.1    76   118   116   158    95   186 0.87 Phosphoribosyl synthetase-associated domain
DUF3263              PF11662.3     77 sp|P0A8F0|UPP_ECOLI  -            208     0.055   12.9   0.0   1   1   3.6e-05      0.11   12.0   0.0    33    59   107   133   101   135 0.89 Protein of unknown function (DUF3263)
DUF1019              PF06254.6     89 sp|P0A8F0|UPP_ECOLI  -            208      0.12   12.4   0.0   2   2   0.00013      0.38   10.9   0.0    16    75   102   161    89   173 0.87 Protein of unknown function (DUF1019)
Xan_ur_permease      PF00860.15   389 sp|P0AGM7|URAA_ECOLI -            429  1.7e-108  362.5  42.7   1   1  3.5e-112  2.6e-108  362.0  42.7     2   387    16   383    15   385 0.98 Permease family
DUF1201              PF06716.6     54 sp|P0AGM7|URAA_ECOLI -            429      0.11   12.3   1.9   1   1   4.3e-05      0.32   10.8   1.9    14    28    93   107    82   110 0.88 Protein of unknown function (DUF1201)
PRK                  PF00485.13   194 sp|P0A8F4|URK_ECOLI  -            213   7.6e-45  152.8   0.0   1   1   4.7e-48   8.7e-45  152.6   0.0     1   193    10   199    10   200 0.94 Phosphoribulokinase / Uridine kinase family
AAA_18               PF13238.1    129 sp|P0A8F4|URK_ECOLI  -            213   1.2e-08   35.3   0.0   1   1     1e-11   1.9e-08   34.7   0.0     1   118    11   158    11   169 0.82 AAA domain
AAA_17               PF13207.1    121 sp|P0A8F4|URK_ECOLI  -            213     4e-07   30.8   0.0   1   1   3.5e-10   6.5e-07   30.1   0.0     1   119    10   161    10   163 0.73 AAA domain
CoaE                 PF01121.15   180 sp|P0A8F4|URK_ECOLI  -            213   4.1e-05   23.0   1.8   1   1   3.9e-07   0.00071   19.0   1.8     2   163    10   172     9   180 0.83 Dephospho-CoA kinase
APS_kinase           PF01583.15   157 sp|P0A8F4|URK_ECOLI  -            213   0.00052   19.7   0.0   1   2     7e-05      0.13   11.9   0.0     3    29     9    35     7    47 0.88 Adenylylsulphate kinase
ABC_tran             PF00005.22   137 sp|P0A8F4|URK_ECOLI  -            213     0.011   15.9   0.0   1   1   8.3e-06     0.015   15.5   0.0    13    70    10    71     5   172 0.75 ABC transporter
AAA_16               PF13191.1    185 sp|P0A8F4|URK_ECOLI  -            213     0.016   15.1   0.0   1   1   1.3e-05     0.024   14.6   0.0    22    62     6    50     2   101 0.74 AAA ATPase domain
Peptidase_M15        PF01427.12   198 sp|P0A8F4|URK_ECOLI  -            213     0.098   12.2   0.0   1   1   7.8e-05      0.14   11.7   0.0    55   138    15    91     4   104 0.88 D-ala-D-ala dipeptidase
Semialdhyde_dhC      PF02774.13   184 sp|P08390|USG_ECOLI  -            337   3.9e-42  144.1   0.0   1   1     3e-45   5.5e-42  143.7   0.0     1   183   141   317   141   318 0.94 Semialdehyde dehydrogenase, dimerisation domain
Semialdhyde_dh       PF01118.19   121 sp|P08390|USG_ECOLI  -            337     7e-25   87.6   0.0   1   1   9.2e-28   1.7e-24   86.4   0.0     1   118     6   118     6   121 0.96 Semialdehyde dehydrogenase, NAD binding domain
DXP_reductoisom      PF02670.11   129 sp|P08390|USG_ECOLI  -            337   8.6e-05   23.0   0.0   1   1   8.6e-08   0.00016   22.2   0.0     1   106     7   104     7   109 0.86 1-deoxy-D-xylulose 5-phosphate reductoisomerase
NAD_binding_10       PF13460.1    183 sp|P08390|USG_ECOLI  -            337   0.00024   21.1   0.2   1   1   3.5e-07   0.00065   19.7   0.2     1    49     7    65     7    88 0.72 NADH(P)-binding
NAD_binding_4        PF07993.7    249 sp|P08390|USG_ECOLI  -            337    0.0019   17.1   0.0   1   1   1.5e-06    0.0029   16.5   0.0     3    35    11    44     9    64 0.88 Male sterility protein
F420_oxidored        PF03807.12    96 sp|P08390|USG_ECOLI  -            337    0.0023   18.3   0.1   1   1   3.1e-06    0.0058   17.0   0.1     1    92     6    95     6    97 0.68 NADP oxidoreductase coenzyme F420-dependent
NmrA                 PF05368.8    233 sp|P08390|USG_ECOLI  -            337    0.0035   16.6   0.1   1   1     4e-06    0.0073   15.5   0.1     1    35     7    44     7    93 0.81 NmrA-like family
Epimerase            PF01370.16   236 sp|P08390|USG_ECOLI  -            337      0.15   11.4   0.0   1   1   0.00012      0.22   10.9   0.0     1    37     7    43     7    78 0.73 NAD dependent epimerase/dehydratase family
5_nucleotid_C        PF02872.13   156 sp|P07024|USHA_ECOLI -            550   8.3e-33  113.5   0.5   1   1   3.9e-36   1.9e-32  112.3   0.5     1   155   363   510   363   511 0.95 5'-nucleotidase, C-terminal domain
Metallophos          PF00149.23   200 sp|P07024|USHA_ECOLI -            550   7.4e-18   64.6   0.1   1   1   2.2e-21   1.1e-17   64.1   0.1     1   197    34   253    34   256 0.95 Calcineurin-like phosphoesterase
SSXT                 PF05030.7     66 sp|P07024|USHA_ECOLI -            550     0.052   13.1   0.0   1   1   2.4e-05      0.12   11.9   0.0    16    35   340   359   338   363 0.92 SSXT protein (N-terminal region)
Usp                  PF00582.21   140 sp|P0AED0|USPA_ECOLI -            144   5.5e-21   75.2   0.0   1   1   1.7e-24   6.3e-21   75.0   0.0     2   140     3   138     2   138 0.98 Universal stress protein family
ETF                  PF01012.16   164 sp|P0AED0|USPA_ECOLI -            144     0.023   14.4   0.0   1   1   1.7e-05     0.062   13.0   0.0    13    99    12   112     9   116 0.84 Electron transfer flavoprotein domain
CLASP_N              PF12348.3    228 sp|P0AED0|USPA_ECOLI -            144      0.13   11.5   0.0   1   2   0.00015      0.54    9.5   0.0    95   127    46    79    31    86 0.78 CLASP N terminal
OmpA_membrane        PF01389.12   183 sp|P0AED0|USPA_ECOLI -            144      0.15   11.5   0.0   1   1   8.3e-05      0.31   10.5   0.0    69   113    60   105    46   123 0.72 OmpA-like transmembrane domain
UspB                 PF10625.4    107 sp|P0A8S5|USPB_ECOLI -            111   2.8e-52  174.9   0.8   1   1   2.2e-56   3.3e-52  174.7   0.8     1   107     1   107     1   107 0.99 Universal stress protein B (UspB)
Usp                  PF00582.21   140 sp|P46888|USPC_ECOLI -            142   7.2e-15   55.4   0.0   1   1   1.1e-18   8.1e-15   55.2   0.0     2   140     3   138     2   138 0.96 Universal stress protein family
Usp                  PF00582.21   140 sp|P0AAB8|USPD_ECOLI -            142   3.5e-17   62.8   0.0   1   1   1.4e-20   4.1e-17   62.6   0.0     2   140     3   138     2   138 0.95 Universal stress protein family
ParcG                PF10274.4    183 sp|P0AAB8|USPD_ECOLI -            142    0.0057   16.5   0.1   1   1   2.3e-06     0.007   16.2   0.1    35   133    31   127    17   135 0.86 Parkin co-regulated protein
Metallophos_2        PF12850.2    156 sp|P0AAB8|USPD_ECOLI -            142     0.019   14.8   0.0   1   1   7.7e-06     0.023   14.5   0.0    81   120    31   114     5   126 0.61 Calcineurin-like phosphoesterase superfamily domain
Uso1_p115_C          PF04871.8    136 sp|P0AAB8|USPD_ECOLI -            142     0.089   12.7   0.2   1   1   5.1e-05      0.15   11.9   0.2    56    92    66   109    55   114 0.88 Uso1 / p115 like vesicle tethering protein, C terminal region
MGDG_synth           PF06925.6    169 sp|P0AAB8|USPD_ECOLI -            142      0.11   12.4   0.0   1   1   6.2e-05      0.18   11.6   0.0    56    99    70   113    60   137 0.78 Monogalactosyldiacylglycerol (MGDG) synthase
Usp                  PF00582.21   140 sp|P37903|USPF_ECOLI -            144   1.4e-28   99.8   0.7   1   1   3.3e-32   1.6e-28   99.6   0.7     1   140     1   144     1   144 0.99 Universal stress protein family
IFT46_B_C            PF12317.3    214 sp|P37903|USPF_ECOLI -            144    0.0052   16.1   0.1   1   1   1.2e-06    0.0058   16.0   0.1   136   177    51    92     8   124 0.79 Intraflagellar transport complex B protein 46 C terminal
CABIT                PF12736.2    256 sp|P37903|USPF_ECOLI -            144     0.056   12.4   0.0   1   1   1.1e-05     0.056   12.4   0.0   165   202    68   100    17   137 0.79 Cell-cycle sustaining, positive selection,
Usp                  PF00582.21   140 sp|P0AAC0|USPE_ECOLI -            316   1.8e-33  115.6   0.0   1   2   4.4e-21   6.6e-17   62.0   0.0     1   140     3   146     3   146 0.98 Universal stress protein family
Usp                  PF00582.21   140 sp|P0AAC0|USPE_ECOLI -            316   1.8e-33  115.6   0.0   2   2   6.3e-18   9.4e-14   51.7   0.1    16   140   174   300   156   300 0.88 Universal stress protein family
Usp                  PF00582.21   140 sp|P39177|USPG_ECOLI -            142   5.2e-26   91.5   0.4   1   1   1.2e-29   5.9e-26   91.3   0.4     1   140     1   142     1   142 0.97 Universal stress protein family
Fe_dep_repr_C        PF02742.10    71 sp|P39177|USPG_ECOLI -            142     0.049   13.3   0.3   1   2   2.9e-05      0.14   11.8   0.1    31    64    49    82    42    87 0.87 Iron dependent repressor, metal binding and dimerisation domain
SUKH-3               PF14433.1    143 sp|P39177|USPG_ECOLI -            142     0.081   12.6   0.0   1   1   2.8e-05      0.14   11.9   0.0    60   106    71   121    55   132 0.79 SUKH-3 immunity protein
ABC_tran             PF00005.22   137 sp|P43672|UUP_ECOLI  -            635   2.2e-50  170.5   0.1   1   2   6.4e-25   1.8e-22   80.1   0.0     1   137    19   185    19   185 0.78 ABC transporter
ABC_tran             PF00005.22   137 sp|P43672|UUP_ECOLI  -            635   2.2e-50  170.5   0.1   2   2   5.6e-27   1.5e-24   86.8   0.0     2   137   336   469   335   469 0.91 ABC transporter
AAA_21               PF13304.1    303 sp|P43672|UUP_ECOLI  -            635   6.7e-23   82.0   7.3   1   3   1.4e-12   3.9e-10   40.1   0.7     3   302    33   216    32   217 0.77 AAA domain
AAA_21               PF13304.1    303 sp|P43672|UUP_ECOLI  -            635   6.7e-23   82.0   7.3   2   3   2.1e-06   0.00058   19.9   0.0     3    24   349   370   348   408 0.80 AAA domain
AAA_21               PF13304.1    303 sp|P43672|UUP_ECOLI  -            635   6.7e-23   82.0   7.3   3   3   9.6e-06    0.0026   17.7   0.3   233   300   437   498   418   501 0.87 AAA domain
ABC_tran_2           PF12848.2     85 sp|P43672|UUP_ECOLI  -            635   4.5e-13   48.8  14.1   1   2     3e-15   8.3e-13   48.0   1.8     1    74   224   295   224   308 0.91 ABC transporter
SMC_N                PF02463.14   220 sp|P43672|UUP_ECOLI  -            635   1.2e-11   44.3   0.1   1   2   9.2e-05     0.025   13.7   0.0    26   206    31   220    20   230 0.67 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|P43672|UUP_ECOLI  -            635   1.2e-11   44.3   0.1   2   2   1.5e-07   4.2e-05   22.8   0.0    27   205   348   503   329   512 0.73 RecF/RecN/SMC N terminal domain
AAA_22               PF13401.1    131 sp|P43672|UUP_ECOLI  -            635   1.9e-09   37.7   5.2   1   2    0.0011       0.3   11.2   0.1     7   122    32   209    26   215 0.50 AAA domain
AAA_22               PF13401.1    131 sp|P43672|UUP_ECOLI  -            635   1.9e-09   37.7   5.2   2   2   5.6e-07   0.00015   21.8   0.2     7   123   348   494   344   501 0.61 AAA domain
AAA_17               PF13207.1    121 sp|P43672|UUP_ECOLI  -            635     2e-09   38.3   3.6   1   2   5.3e-06    0.0015   19.3   0.0     1    77    31   111    31   155 0.61 AAA domain
AAA_17               PF13207.1    121 sp|P43672|UUP_ECOLI  -            635     2e-09   38.3   3.6   2   2   0.00011     0.031   15.1   0.1     1    40   347   388   347   571 0.82 AAA domain
AAA_23               PF13476.1    202 sp|P43672|UUP_ECOLI  -            635   1.5e-08   35.2   6.3   1   4   0.00091      0.25   11.6   0.0    20    37    30    47    11    50 0.78 AAA domain
AAA_23               PF13476.1    202 sp|P43672|UUP_ECOLI  -            635   1.5e-08   35.2   6.3   3   4   0.00018     0.049   13.9   0.0    22    39   348   365   332   404 0.88 AAA domain
DUF258               PF03193.11   161 sp|P43672|UUP_ECOLI  -            635     3e-08   33.0   0.0   1   2   5.2e-05     0.014   14.5   0.0    31    65    24    59     5    77 0.81 Protein of unknown function, DUF258
DUF258               PF03193.11   161 sp|P43672|UUP_ECOLI  -            635     3e-08   33.0   0.0   2   2   2.3e-05    0.0063   15.7   0.0    17    67   326   377   316   382 0.80 Protein of unknown function, DUF258
AAA_29               PF13555.1     62 sp|P43672|UUP_ECOLI  -            635   8.7e-08   31.5   0.0   1   2   2.2e-05    0.0061   16.0   0.0    16    40    23    46    17    49 0.80 P-loop containing region of AAA domain
AAA_29               PF13555.1     62 sp|P43672|UUP_ECOLI  -            635   8.7e-08   31.5   0.0   2   2   0.00028     0.076   12.5   0.0    22    40   344   362   333   371 0.86 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|P43672|UUP_ECOLI  -            635     1e-07   32.1   7.9   1   2   0.00039      0.11   12.5   0.0    27   169    32   194    21   204 0.51 AAA ATPase domain
AAA_16               PF13191.1    185 sp|P43672|UUP_ECOLI  -            635     1e-07   32.1   7.9   2   2   8.1e-07   0.00022   21.2   0.1    25   181   346   489   333   493 0.72 AAA ATPase domain
AAA_13               PF13166.1    712 sp|P43672|UUP_ECOLI  -            635   5.6e-07   28.4   1.9   1   3   7.2e-06     0.002   16.6   0.0     5   108    19   130    15   147 0.65 AAA domain
AAA_33               PF13671.1    143 sp|P43672|UUP_ECOLI  -            635   9.1e-07   28.8   0.1   1   3   0.00078      0.22   11.4   0.0     2    60    32    88    32   144 0.81 AAA domain
AAA_33               PF13671.1    143 sp|P43672|UUP_ECOLI  -            635   9.1e-07   28.8   0.1   2   3     0.001      0.28   11.0   0.0     3    24   349   370   348   410 0.85 AAA domain
AAA_30               PF13604.1    196 sp|P43672|UUP_ECOLI  -            635   2.2e-06   27.4   0.0   1   3    0.0032      0.89    9.1   0.0    16    40    28    51    21    62 0.76 AAA domain
AAA_30               PF13604.1    196 sp|P43672|UUP_ECOLI  -            635   2.2e-06   27.4   0.0   2   3   0.00098      0.27   10.7   0.0    16   132   344   498   336   501 0.70 AAA domain
AAA_18               PF13238.1    129 sp|P43672|UUP_ECOLI  -            635   2.3e-06   27.9   0.3   1   2   0.00013     0.035   14.4   0.0     1    82    32   113    32   140 0.80 AAA domain
AAA_18               PF13238.1    129 sp|P43672|UUP_ECOLI  -            635   2.3e-06   27.9   0.3   2   2    0.0018      0.49   10.7   0.1     1    61   348   414   348   479 0.73 AAA domain
AAA_14               PF13173.1    128 sp|P43672|UUP_ECOLI  -            635     4e-06   26.7   0.0   2   2   9.4e-05     0.026   14.4   0.0     4    39   347   391   344   417 0.67 AAA domain
NACHT                PF05729.7    166 sp|P43672|UUP_ECOLI  -            635   4.6e-06   26.3   0.5   1   2    0.0015      0.43   10.2   0.0     2    21    31    50    30   109 0.79 NACHT domain
NACHT                PF05729.7    166 sp|P43672|UUP_ECOLI  -            635   4.6e-06   26.3   0.5   2   2   0.00027     0.074   12.7   1.2     3    26   348   371   346   496 0.83 NACHT domain
AAA_10               PF12846.2    304 sp|P43672|UUP_ECOLI  -            635   4.8e-06   26.2   1.6   1   2   0.00034     0.094   12.1   0.0     5    30    33    64    29   146 0.77 AAA-like domain
AAA_10               PF12846.2    304 sp|P43672|UUP_ECOLI  -            635   4.8e-06   26.2   1.6   2   2   0.00035     0.096   12.1   0.6     5    32   349   376   347   625 0.81 AAA-like domain
Zeta_toxin           PF06414.7    201 sp|P43672|UUP_ECOLI  -            635   5.5e-06   25.6   0.4   1   3    0.0014      0.39    9.7   0.0    18    47    31    61    17    73 0.79 Zeta toxin
AAA                  PF00004.24   132 sp|P43672|UUP_ECOLI  -            635   1.1e-05   25.6   0.0   2   2   5.2e-05     0.014   15.5   0.0     2    33   349   380   348   412 0.80 ATPase family associated with various cellular activities (AAA)
RNA_helicase         PF00910.17   107 sp|P43672|UUP_ECOLI  -            635   1.4e-05   25.2   0.2   2   2   0.00073       0.2   11.8   0.0     2    47   349   390   348   416 0.66 RNA helicase
PduV-EutP            PF10662.4    143 sp|P43672|UUP_ECOLI  -            635   2.2e-05   23.9   0.4   1   2    0.0016      0.45   10.0   0.0     2    25    30    53    29    62 0.91 Ethanolamine utilisation - propanediol utilisation
PduV-EutP            PF10662.4    143 sp|P43672|UUP_ECOLI  -            635   2.2e-05   23.9   0.4   2   2   0.00049      0.13   11.7   0.1     3    23   347   367   345   373 0.86 Ethanolamine utilisation - propanediol utilisation
AAA_15               PF13175.1    415 sp|P43672|UUP_ECOLI  -            635   2.9e-05   23.2   0.0   1   3    0.0023      0.63    9.0   0.0    26    43    33    52    14   145 0.75 AAA ATPase domain
Arch_ATPase          PF01637.13   234 sp|P43672|UUP_ECOLI  -            635   7.4e-05   22.5   0.1   2   2   0.00022     0.059   13.0   0.0    24    61   349   394   342   437 0.76 Archaeal ATPase
AAA_25               PF13481.1    194 sp|P43672|UUP_ECOLI  -            635   7.5e-05   22.2   0.0   2   2    0.0022      0.61    9.4   0.0    31    58   343   370   331   400 0.76 AAA domain
ATP-synt_ab          PF00006.20   215 sp|P43672|UUP_ECOLI  -            635   8.9e-05   22.0   0.0   2   2   7.9e-05     0.022   14.2   0.0     7    48   337   379   332   616 0.77 ATP synthase alpha/beta family, nucleotide-binding domain
MMR_HSR1             PF01926.18   116 sp|P43672|UUP_ECOLI  -            635   0.00011   22.1   0.0   1   2   0.00096      0.26   11.2   0.0     1    20    31    50    31   125 0.92 50S ribosome-binding GTPase
AAA_28               PF13521.1    163 sp|P43672|UUP_ECOLI  -            635   0.00011   22.2   3.0   2   2   0.00024     0.065   13.2   0.0     1    18   347   364   347   393 0.87 AAA domain
UPF0079              PF02367.12   123 sp|P43672|UUP_ECOLI  -            635   0.00012   21.7   0.1   2   2   0.00047      0.13   11.9   0.1     3    41   333   371   331   392 0.86 Uncharacterised P-loop hydrolase UPF0079
T2SE                 PF00437.15   272 sp|P43672|UUP_ECOLI  -            635   0.00014   20.8   0.0   2   2   1.5e-05     0.004   16.0   0.0    52   160   265   377   234   402 0.68 Type II/IV secretion system protein
AAA_5                PF07728.9    139 sp|P43672|UUP_ECOLI  -            635   0.00015   21.5   0.2   2   2    0.0011      0.31   10.7   0.0     3    25   349   371   347   400 0.84 AAA domain (dynein-related subfamily)
MobB                 PF03205.9    140 sp|P43672|UUP_ECOLI  -            635   0.00017   21.3   0.1   2   2    0.0018       0.5   10.0   0.1     3    30   348   375   347   386 0.85 Molybdopterin guanine dinucleotide synthesis protein B
Miro                 PF08477.8    119 sp|P43672|UUP_ECOLI  -            635   0.00019   21.9   0.0   2   2    0.0019      0.52   10.8   0.0     1    23   347   369   347   404 0.84 Miro-like protein
Dynamin_N            PF00350.18   168 sp|P43672|UUP_ECOLI  -            635   0.00027   20.8   0.1   1   2   0.00028     0.077   12.8   0.0     1    73    32   102    32   193 0.76 Dynamin family
DUF815               PF05673.8    250 sp|P43672|UUP_ECOLI  -            635    0.0011   17.9   0.0   1   2    0.0032      0.89    8.4   0.0    42    78    20    54    13    71 0.77 Protein of unknown function (DUF815)
AAA_24               PF13479.1    213 sp|P43672|UUP_ECOLI  -            635    0.0024   17.4   0.0   2   2    0.0033      0.91    9.0   0.0     5    24   347   367   344   409 0.80 AAA domain
NB-ARC               PF00931.17   287 sp|P43672|UUP_ECOLI  -            635    0.0027   16.6   3.5   1   2    0.0014      0.38    9.5   0.1    17    43    27    53    18   145 0.85 NB-ARC domain
Rad17                PF03215.10   519 sp|P43672|UUP_ECOLI  -            635     0.015   14.0   0.0   2   2    0.0031      0.85    8.2   0.0    36    65   339   365   331   390 0.79 Rad17 cell cycle checkpoint protein
Pox_A32              PF04665.7    241 sp|P43672|UUP_ECOLI  -            635     0.022   14.0   0.0   2   2    0.0022      0.61    9.3   0.0    15    40   347   372   335   390 0.78 Poxvirus A32 protein
DUF342               PF03961.8    451 sp|P43672|UUP_ECOLI  -            635      0.16   10.3   1.2   1   1   0.00091      0.25    9.7   0.4   319   402   542   629   496   634 0.73 Protein of unknown function (DUF342)
ABC_tran             PF00005.22   137 sp|P0A698|UVRA_ECOLI -            940   3.5e-22   79.1   0.0   1   4   1.8e-05    0.0075   16.5   0.0     1    80    14   150    14   235 0.55 ABC transporter
ABC_tran             PF00005.22   137 sp|P0A698|UVRA_ECOLI -            940   3.5e-22   79.1   0.0   2   4   0.00032      0.13   12.5   0.0    79   135   439   515   368   517 0.66 ABC transporter
ABC_tran             PF00005.22   137 sp|P0A698|UVRA_ECOLI -            940   3.5e-22   79.1   0.0   3   4   8.4e-06    0.0036   17.6   0.0     1    29   623   651   623   692 0.92 ABC transporter
ABC_tran             PF00005.22   137 sp|P0A698|UVRA_ECOLI -            940   3.5e-22   79.1   0.0   4   4   2.4e-08     1e-05   25.8   0.0    85   136   806   860   746   861 0.77 ABC transporter
SMC_N                PF02463.14   220 sp|P0A698|UVRA_ECOLI -            940   4.2e-11   42.4   0.0   3   4    0.0011      0.48    9.6   0.0    25    51   634   660   615   668 0.79 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|P0A698|UVRA_ECOLI -            940   4.2e-11   42.4   0.0   4   4   0.00013     0.056   12.6   0.0   133   209   826   902   732   909 0.82 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P0A698|UVRA_ECOLI -            940   1.9e-07   30.4   0.2   1   2   0.00075      0.32   10.5   0.0    22    39    23    40    12    53 0.82 P-loop containing region of AAA domain
AAA_29               PF13555.1     62 sp|P0A698|UVRA_ECOLI -            940   1.9e-07   30.4   0.2   2   2     8e-06    0.0034   16.8   0.1    24    40   634   650   622   668 0.77 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|P0A698|UVRA_ECOLI -            940     1e-06   28.8   4.9   2   2   4.4e-06    0.0019   18.2   0.0    26    54   635   665   622   679 0.82 AAA ATPase domain
AAA_25               PF13481.1    194 sp|P0A698|UVRA_ECOLI -            940   2.8e-06   26.8   0.1   1   2   0.00026      0.11   11.8   0.0    29    56    20    47     8    52 0.87 AAA domain
AAA_25               PF13481.1    194 sp|P0A698|UVRA_ECOLI -            940   2.8e-06   26.8   0.1   2   2   0.00028      0.12   11.7   0.0    30    65   630   664   621   676 0.83 AAA domain
DnaJ_CXXCXGXG        PF00684.14    66 sp|P0A698|UVRA_ECOLI -            940   8.8e-06   25.6   3.6   3   3   8.9e-06    0.0038   17.2   0.3    17    52   739   771   731   776 0.87 DnaJ central domain
DUF258               PF03193.11   161 sp|P0A698|UVRA_ECOLI -            940   2.3e-05   23.6   0.1   1   2     0.002      0.83    8.8   0.0    24    52    12    41     3    62 0.77 Protein of unknown function, DUF258
DUF258               PF03193.11   161 sp|P0A698|UVRA_ECOLI -            940   2.3e-05   23.6   0.1   2   2   0.00018     0.078   12.1   0.0    20    54   617   652   601   666 0.74 Protein of unknown function, DUF258
AAA_21               PF13304.1    303 sp|P0A698|UVRA_ECOLI -            940   2.6e-05   24.3   6.7   3   3   0.00081      0.34   10.8   0.0   237   294   830   887   783   895 0.86 AAA domain
AAA_23               PF13476.1    202 sp|P0A698|UVRA_ECOLI -            940   0.00012   22.4   2.6   1   2   0.00073      0.31   11.3   0.1     1    35     3    40     3    42 0.86 AAA domain
AAA_23               PF13476.1    202 sp|P0A698|UVRA_ECOLI -            940   0.00012   22.4   2.6   2   2    0.0016      0.66   10.2   0.6    11    36   624   650   619   651 0.78 AAA domain
AAA_18               PF13238.1    129 sp|P0A698|UVRA_ECOLI -            940   0.00017   21.8   0.0   2   2    0.0022      0.94    9.7   0.0     2    16   637   651   637   683 0.90 AAA domain
AAA_17               PF13207.1    121 sp|P0A698|UVRA_ECOLI -            940   0.00022   22.0   7.5   1   2    0.0013      0.55   11.0   0.4     1    16    26    41    26    42 0.93 AAA domain
AAA_17               PF13207.1    121 sp|P0A698|UVRA_ECOLI -            940   0.00022   22.0   7.5   2   2    0.0012       0.5   11.1   0.5     3    16   637   650   636   652 0.92 AAA domain
AAA_10               PF12846.2    304 sp|P0A698|UVRA_ECOLI -            940   0.00095   18.6   0.1   2   2    0.0012      0.53    9.6   0.0     4    21   636   654   634   677 0.86 AAA-like domain
NACHT                PF05729.7    166 sp|P0A698|UVRA_ECOLI -            940    0.0024   17.5   0.0   2   2    0.0007       0.3   10.7   0.0     3    32   636   665   634   677 0.91 NACHT domain
Viral_helicase1      PF01443.13   234 sp|P0A698|UVRA_ECOLI -            940    0.0051   16.3   0.0   2   2   0.00077      0.33   10.4   0.0     2    21   637   656   636   678 0.84 Viral (Superfamily 1) RNA helicase
cobW                 PF02492.14   178 sp|P0A698|UVRA_ECOLI -            940    0.0066   15.9   0.4   2   2   0.00056      0.24   10.8   0.1     2    22   635   655   634   668 0.79 CobW/HypB/UreG, nucleotide-binding domain
MobB                 PF03205.9    140 sp|P0A698|UVRA_ECOLI -            940    0.0078   15.9   0.0   2   2    0.0021      0.91    9.2   0.0     5    34   638   667   635   677 0.87 Molybdopterin guanine dinucleotide synthesis protein B
DUF2083              PF09856.4    156 sp|P0A698|UVRA_ECOLI -            940      0.13   11.9   0.0   1   1   0.00092      0.39   10.3   0.0    21    86    99   165    96   172 0.88 Predicted transcriptional regulator (DUF2083)
RNA_pol_Rbc25        PF08292.7    122 sp|P0A698|UVRA_ECOLI -            940      0.13   12.4   0.0   1   1   0.00077      0.33   11.1   0.0     9    45   738   774   731   797 0.84 RNA polymerase III subunit Rpc25
UvrB                 PF12344.3     44 sp|P0A8F8|UVRB_ECOLI -            673   7.2e-23   79.8   0.9   2   2   2.7e-25   3.1e-22   77.8   0.1     1    43   552   594   552   595 0.97 Ultra-violet resistance protein B
Helicase_C           PF00271.26    78 sp|P0A8F8|UVRB_ECOLI -            673   1.2e-15   57.0   0.0   1   1   2.6e-18   2.9e-15   55.8   0.0     2    77   465   545   464   546 0.98 Helicase conserved C-terminal domain
ResIII               PF04851.10   184 sp|P0A8F8|UVRB_ECOLI -            673   1.2e-11   44.8   0.0   1   1   6.6e-14   7.5e-11   42.1   0.0     4    94    13   101    10   134 0.79 Type III restriction enzyme, res subunit
UVR                  PF02151.14    36 sp|P0A8F8|UVRB_ECOLI -            673   7.4e-07   28.4   1.1   1   1     2e-09   2.3e-06   26.9   1.1     2    35   634   667   633   668 0.93 UvrB/uvrC motif
AAA_19               PF13245.1     76 sp|P0A8F8|UVRB_ECOLI -            673   1.2e-06   28.1   0.1   1   2   4.1e-07   0.00047   19.8   0.0    15    58    37    73    20    89 0.86 Part of AAA domain
DEAD                 PF00270.24   169 sp|P0A8F8|UVRB_ECOLI -            673   1.2e-05   24.9   0.0   1   2   6.1e-07    0.0007   19.1   0.0    19    70    37    83    15   100 0.77 DEAD/DEAH box helicase
UB2H                 PF14814.1     85 sp|P0A8F8|UVRB_ECOLI -            673    0.0072   16.0   0.0   1   1   1.6e-05     0.018   14.7   0.0     1    43   161   203   161   225 0.95 Bifunctional transglycosylase second domain
AAA_33               PF13671.1    143 sp|P0A8F8|UVRB_ECOLI -            673     0.024   14.5   0.1   1   1   0.00014      0.15   11.8   0.0     4    43    37    79    36   150 0.67 AAA domain
Kinesin              PF00225.18   335 sp|P0A8F8|UVRB_ECOLI -            673     0.096   11.3   0.0   1   1   0.00015      0.17   10.5   0.0    80   137    37    97     2   124 0.66 Kinesin motor domain
IF2_N                PF04760.10    54 sp|P0A8F8|UVRB_ECOLI -            673      0.15   11.7   1.3   1   1   0.00033      0.37   10.4   0.2    13    51   625   662   625   664 0.87 Translation initiation factor IF-2, N-terminal region
UvrC_HhH_N           PF08459.6    155 sp|P0A8G0|UVRC_ECOLI -            610   3.8e-52  175.9   0.0   1   1   3.7e-55   7.7e-52  174.9   0.0     1   155   383   542   383   542 0.96 UvrC Helix-hairpin-helix N-terminal
GIY-YIG              PF01541.19    80 sp|P0A8G0|UVRC_ECOLI -            610   3.1e-12   46.6   0.1   1   1   3.2e-15   6.7e-12   45.6   0.1     2    80    18    93    17    93 0.83 GIY-YIG catalytic domain
HHH                  PF00633.18    30 sp|P0A8G0|UVRC_ECOLI -            610   1.3e-10   40.3   0.0   1   2     8e-05      0.17   11.6   0.0     6    30   551   575   546   575 0.82 Helix-hairpin-helix motif
HHH                  PF00633.18    30 sp|P0A8G0|UVRC_ECOLI -            610   1.3e-10   40.3   0.0   2   2     2e-09   4.2e-06   26.1   0.0     2    29   579   606   578   607 0.94 Helix-hairpin-helix motif
UVR                  PF02151.14    36 sp|P0A8G0|UVRC_ECOLI -            610   2.8e-10   39.3   1.0   1   1   2.6e-13   5.5e-10   38.4   1.0     2    34   205   237   204   239 0.93 UvrB/uvrC motif
HHH_5                PF14520.1     60 sp|P0A8G0|UVRC_ECOLI -            610   1.2e-06   28.5   0.0   1   1     2e-09   4.2e-06   26.8   0.0     7    54   558   604   555   609 0.95 Helix-hairpin-helix domain
HHH_2                PF12826.2     64 sp|P0A8G0|UVRC_ECOLI -            610     4e-05   23.3   0.0   1   1   4.6e-08   9.8e-05   22.1   0.0     8    52   561   605   558   609 0.95 Helix-hairpin-helix motif
HHH_3                PF12836.2     65 sp|P0A8G0|UVRC_ECOLI -            610   0.00016   21.5   0.1   3   3    0.0002      0.43   10.5   0.0    10    30   584   604   582   606 0.93 Helix-hairpin-helix motif
UvrD_C               PF13361.1    351 sp|P03018|UVRD_ECOLI -            720  5.1e-107  358.3   0.0   1   1  3.7e-110  6.8e-107  357.9   0.0     1   350   277   616   277   617 0.98 UvrD-like helicase C-terminal domain
UvrD-helicase        PF00580.16   315 sp|P03018|UVRD_ECOLI -            720   2.2e-76  257.2   0.0   1   1   3.3e-79   6.2e-76  255.6   0.0     1   314    10   271    10   272 0.98 UvrD/REP helicase N-terminal domain
AAA_19               PF13245.1     76 sp|P03018|UVRD_ECOLI -            720   7.5e-14   51.2   0.2   1   1   1.4e-16   2.7e-13   49.4   0.1     2    75    17    93    16    95 0.85 Part of AAA domain
UvrD_C_2             PF13538.1    104 sp|P03018|UVRD_ECOLI -            720   1.2e-10   41.4   0.0   1   1   1.4e-13   2.7e-10   40.3   0.0    54   103   543   612   491   613 0.77 UvrD-like helicase C-terminal domain
AAA_30               PF13604.1    196 sp|P03018|UVRD_ECOLI -            720   2.9e-07   30.2   0.0   1   2   6.6e-08   0.00012   21.6   0.0     2    67    10    75     9   119 0.73 AAA domain
Exonuc_V_gamma       PF04257.9    805 sp|P03018|UVRD_ECOLI -            720   0.00021   19.4   2.6   2   2   3.6e-07   0.00067   17.7   0.4   519   662   445   586   430   599 0.77 Exodeoxyribonuclease V, gamma subunit
Viral_helicase1      PF01443.13   234 sp|P03018|UVRD_ECOLI -            720   0.00065   19.2   0.0   3   3   0.00045      0.84    9.1   0.0   174   231   546   611   496   613 0.78 Viral (Superfamily 1) RNA helicase
PhoH                 PF02562.11   205 sp|P03018|UVRD_ECOLI -            720    0.0022   17.2   0.0   2   2   0.00027       0.5    9.5   0.0   123   188   217   281   211   297 0.82 PhoH-like protein
GD_AH_C              PF04295.8    397 sp|P42604|UXAA_ECOLI -            495  5.9e-154  512.5   0.1   1   1  9.9e-158  7.4e-154  512.1   0.1     3   397   106   495   104   495 0.99 D-galactarate dehydratase / Altronate hydrolase, C terminus
SAF                  PF08666.7     63 sp|P42604|UXAA_ECOLI -            495     2e-15   56.9   0.9   1   1   5.8e-19   4.3e-15   55.8   0.9     1    62    10    80    10    81 0.98 SAF domain
Mannitol_dh_C        PF08125.8    245 sp|P0A6L7|UXAB_ECOLI -            483   1.3e-79  266.8   0.0   1   1   2.4e-83   1.8e-79  266.4   0.0     2   244   204   458   203   459 0.98 Mannitol dehydrogenase C-terminal domain
Mannitol_dh          PF01232.18   151 sp|P0A6L7|UXAB_ECOLI -            483   8.7e-42  142.6   0.0   1   1   2.6e-45   1.9e-41  141.4   0.0     2   150    17   172    16   173 0.98 Mannitol dehydrogenase Rossmann domain
UxaC                 PF02614.9    462 sp|P0A8G3|UXAC_ECOLI -            470  3.2e-203  675.5   0.0   1   1  2.4e-207  3.5e-203  675.3   0.0     1   462     1   465     1   465 1.00 Glucuronate isomerase
UxuA                 PF03786.8    351 sp|P24215|UXUA_ECOLI -            394  2.4e-163  542.7   0.2   1   1  5.4e-167  2.7e-163  542.5   0.2     1   350     1   388     1   389 0.99 D-mannonate dehydratase (UxuA)
AP_endonuc_2         PF01261.19   213 sp|P24215|UXUA_ECOLI -            394   5.3e-09   35.6   0.0   1   1   7.5e-12   3.7e-08   32.9   0.0     3   191    18   299    16   320 0.81 Xylose isomerase-like TIM barrel
Catalase-rel         PF06628.7     68 sp|P24215|UXUA_ECOLI -            394    0.0015   18.3   0.0   1   1   8.1e-07     0.004   16.9   0.0     8    41   153   186   146   205 0.88 Catalase-related immune-responsive
Mannitol_dh_C        PF08125.8    245 sp|P39160|UXUB_ECOLI -            486   6.5e-96  320.2   0.0   1   1   1.2e-99   8.9e-96  319.7   0.0     1   245   216   463   216   463 0.99 Mannitol dehydrogenase C-terminal domain
Mannitol_dh          PF01232.18   151 sp|P39160|UXUB_ECOLI -            486   4.2e-54  182.6   0.0   1   1   8.7e-58   6.5e-54  181.9   0.0     2   151    24   188    23   188 0.99 Mannitol dehydrogenase Rossmann domain
HutD                 PF05962.6    184 sp|P76214|VES_ECOLI  -            191   2.2e-46  157.9   0.0   1   1   1.7e-50   2.5e-46  157.7   0.0     2   184     5   179     4   179 0.91 HutD
VWA_CoxE             PF05762.9    222 sp|P0ADN0|VIAA_ECOLI -            483   3.8e-12   45.8   0.2   2   2   4.2e-15   1.2e-11   44.1   0.0    56   196   319   459   284   465 0.82 VWA domain containing CoxE-like protein
VWA_3                PF13768.1    155 sp|P0ADN0|VIAA_ECOLI -            483   0.00032   20.4   0.0   1   1   2.5e-07   0.00073   19.2   0.0     6   136   325   454   322   462 0.76 von Willebrand factor type A domain
VWA_2                PF13519.1    172 sp|P0ADN0|VIAA_ECOLI -            483   0.00069   19.7   0.0   2   2     9e-07    0.0027   17.8   0.0     2   134   322   451   321   463 0.77 von Willebrand factor type A domain
DUF2201              PF09967.4    126 sp|P0ADN0|VIAA_ECOLI -            483    0.0021   18.0   0.0   1   1   1.4e-06    0.0041   17.1   0.0     3    79   324   405   322   422 0.87 VWA-like domain (DUF2201)
VWA                  PF00092.23   178 sp|P0ADN0|VIAA_ECOLI -            483      0.02   14.5   0.0   1   1   1.3e-05     0.038   13.7   0.0     5    99   325   410   323   423 0.82 von Willebrand factor type A domain
Vsr                  PF03852.10    75 sp|P09184|VSR_ECOLI  -            156   2.1e-34  116.9   0.1   1   1   2.3e-38   3.4e-34  116.2   0.1     1    73     2    74     2    76 0.98 DNA mismatch endonuclease Vsr
Glyco_tranf_2_3      PF13641.1    228 sp|P36667|WBBL_ECOLI -            264   1.1e-14   54.8   0.0   1   1   8.3e-18   1.8e-14   54.1   0.0     3   225     2   235     1   237 0.77 Glycosyltransferase like family 2
Glycos_transf_2      PF00535.21   169 sp|P36667|WBBL_ECOLI -            264   1.8e-11   44.0   0.9   1   1   8.4e-15   1.8e-11   44.0   0.9     2   132     4   146     3   181 0.82 Glycosyl transferase family 2
Glyco_tranf_2_2      PF10111.4    281 sp|P36667|WBBL_ECOLI -            264   1.1e-10   41.0   3.0   1   1   9.6e-14     2e-10   40.2   3.0     7   237     7   238     2   254 0.79 Glycosyltransferase like family 2
Glyco_transf_21      PF13506.1    175 sp|P36667|WBBL_ECOLI -            264   1.2e-07   31.2   0.0   1   1     1e-10   2.2e-07   30.3   0.0    25   173    76   235    62   237 0.83 Glycosyl transferase family 21
Glyco_trans_2_3      PF13632.1    193 sp|P36667|WBBL_ECOLI -            264   1.4e-07   31.3   1.3   1   1   1.3e-10   2.7e-07   30.4   1.3    71   142   164   238    84   262 0.69 Glycosyl transferase family group 2
Glyco_transf_7C      PF02709.9     78 sp|P36667|WBBL_ECOLI -            264   7.5e-07   28.5   0.0   1   1   8.1e-10   1.7e-06   27.3   0.0    18    72   166   220   152   225 0.84 N-terminal domain of galactosyltransferase
Glyco_tranf_2_5      PF13712.1    217 sp|P36667|WBBL_ECOLI -            264     0.012   14.8   2.8   2   2    0.0003      0.63    9.2   0.3   147   208   167   231   146   239 0.74 Glycosyltransferase like family
Hexapep              PF00132.19    36 sp|P37750|WBBJ_ECOLI -            196   1.2e-12   46.7  13.2   1   3   2.5e-05      0.19   11.3   0.2     6    35    72   103    70   104 0.86 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P37750|WBBJ_ECOLI -            196   1.2e-12   46.7  13.2   2   3   7.4e-14   5.5e-10   38.2   5.3     2    36   133   167   132   167 0.97 Bacterial transferase hexapeptide (six repeats)
Hexapep_2            PF14602.1     34 sp|P37750|WBBJ_ECOLI -            196   1.4e-07   30.9   6.9   2   2   1.1e-10   7.9e-07   28.5   4.4     2    32   133   165   132   167 0.95 Hexapeptide repeat of succinyl-transferase
Hexapep              PF00132.19    36 sp|P0ACD2|WCAF_ECOLI -            182   3.4e-13   48.4   6.5   1   3   1.1e-05      0.08   12.4   0.2    19    34    51    66    51    67 0.65 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0ACD2|WCAF_ECOLI -            182   3.4e-13   48.4   6.5   3   3   1.5e-11   1.1e-07   31.0   0.2     2    34   125   157   124   159 0.93 Bacterial transferase hexapeptide (six repeats)
Hexapep_2            PF14602.1     34 sp|P0ACD2|WCAF_ECOLI -            182   5.1e-07   29.1   0.9   3   3   2.2e-07    0.0016   17.9   0.2     1    28   124   153   124   158 0.95 Hexapeptide repeat of succinyl-transferase
Glycos_transf_1      PF00534.15   172 sp|P71243|WCAL_ECOLI -            406   2.3e-38  131.2   0.0   1   1   1.4e-41   4.2e-38  130.4   0.0    11   169   218   382   209   385 0.92 Glycosyl transferases group 1
Glyco_trans_1_4      PF13692.1    135 sp|P71243|WCAL_ECOLI -            406   4.2e-17   62.5   0.0   1   1     3e-20     9e-17   61.4   0.0     5   131   225   366   222   369 0.89 Glycosyl transferases group 1
Glyco_transf_4       PF13439.1    177 sp|P71243|WCAL_ECOLI -            406   2.7e-09   36.9   0.0   1   2   9.4e-10   2.8e-06   27.1   0.0    75   177   113   212    14   212 0.66 Glycosyltransferase Family 4
Glyco_trans_4_4      PF13579.1    160 sp|P71243|WCAL_ECOLI -            406   1.9e-08   34.6   0.4   1   3   5.3e-09   1.6e-05   25.1   0.0     4   156    15   201    14   205 0.61 Glycosyl transferase 4-like domain
Glyco_trans_1_2      PF13524.1     92 sp|P71243|WCAL_ECOLI -            406   2.5e-05   24.4   0.0   1   1   2.1e-08   6.2e-05   23.1   0.0     3    81   303   390   301   400 0.86 Glycosyl transferases group 1
Hexapep              PF00132.19    36 sp|P0ACC9|WCAB_ECOLI -            162   2.6e-11   42.4  14.7   2   3   1.8e-05      0.13   11.7   1.1     2    24    78   100    77   101 0.88 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0ACC9|WCAB_ECOLI -            162   2.6e-11   42.4  14.7   3   3   4.4e-13   3.3e-09   35.8   4.8     2    34   109   141   108   143 0.96 Bacterial transferase hexapeptide (six repeats)
Hexapep_2            PF14602.1     34 sp|P0ACC9|WCAB_ECOLI -            162   4.3e-05   22.9   6.5   2   2   5.8e-09   4.3e-05   22.9   6.5     3    32   110   141   110   143 0.94 Hexapeptide repeat of succinyl-transferase
Bac_transf           PF02397.11   187 sp|P71241|WCAJ_ECOLI -            464   3.3e-75  251.3   0.2   2   2   1.8e-78   8.9e-75  249.9   0.0     1   185   274   462   274   464 0.95 Bacterial sugar transferase
CoA_binding_3        PF13727.1    175 sp|P71241|WCAJ_ECOLI -            464     1e-42  145.9   0.1   1   1     2e-46     1e-42  145.9   0.1     2   175    65   238    64   238 0.92 CoA-binding domain
FAM163               PF15069.1    143 sp|P71241|WCAJ_ECOLI -            464      0.12   12.9   0.0   2   2   9.7e-05      0.48   10.9   0.0    12    33   280   301   279   395 0.73 FAM163 family
PS_pyruv_trans       PF04230.8    286 sp|P71242|WCAK_ECOLI -            426   1.1e-39  136.8   0.0   1   1   2.4e-43   1.8e-39  136.2   0.0     1   286    13   356    13   356 0.94 Polysaccharide pyruvyl transferase
Sortase              PF04203.8    128 sp|P71242|WCAK_ECOLI -            426    0.0038   16.8   0.1   1   1   1.3e-06    0.0094   15.5   0.1    40   122   148   295   118   297 0.71 Sortase family
Glycos_transf_4      PF00953.16   159 sp|P0AC78|WECA_ECOLI -            367   1.2e-28   99.9  21.3   1   2   1.6e-32   1.2e-28   99.9  21.3     3   157    75   233    73   235 0.94 Glycosyl transferase family 4
Epimerase_2          PF02350.14   346 sp|P27828|WECB_ECOLI -            376  8.2e-127  422.7   0.0   1   1  2.5e-130  9.4e-127  422.5   0.0     2   346    22   370    21   370 0.97 UDP-N-acetylglucosamine 2-epimerase
Glyco_trans_4_4      PF13579.1    160 sp|P27828|WECB_ECOLI -            376    0.0056   16.8   0.0   1   2     5e-06     0.018   15.1   0.0    60   159    75   171    32   172 0.79 Glycosyl transferase 4-like domain
Glycos_transf_1      PF00534.15   172 sp|P27828|WECB_ECOLI -            376     0.013   14.9   0.0   1   1   7.6e-06     0.028   13.8   0.0   111   168   296   352   294   354 0.90 Glycosyl transferases group 1
Glyco_trans_4_2      PF13477.1    139 sp|P27828|WECB_ECOLI -            376     0.019   14.8   0.0   1   1   8.2e-06      0.03   14.1   0.0    65   102    77   113    45   137 0.88 Glycosyl transferase 4-like
UDPG_MGDP_dh_N       PF03721.9    185 sp|P27829|WECC_ECOLI -            420   2.7e-61  206.1   0.2   1   2   2.3e-62   2.6e-59  199.7   0.1     2   183     5   189     4   191 0.96 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh         PF00984.14    96 sp|P27829|WECC_ECOLI -            420   4.3e-30  103.7   0.0   1   1   7.6e-33   8.7e-30  102.7   0.0     2    93   206   292   205   296 0.88 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C       PF03720.10   106 sp|P27829|WECC_ECOLI -            420   8.1e-19   67.7   0.0   1   1   1.8e-21   2.1e-18   66.4   0.0     1   104   324   419   324   420 0.91 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
NAD_binding_2        PF03446.10   163 sp|P27829|WECC_ECOLI -            420   7.4e-07   29.1   0.1   1   1   6.4e-09   7.3e-06   25.9   0.0     2   111     4   136     3   141 0.76 NAD binding domain of 6-phosphogluconate dehydrogenase
2-Hacid_dh_C         PF02826.14   178 sp|P27829|WECC_ECOLI -            420    0.0017   17.5   0.2   1   2    0.0003      0.34   10.0   0.0    37    81     4    48     1    61 0.81 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
TrkA_N               PF02254.13   116 sp|P27829|WECC_ECOLI -            420    0.0033   17.4   1.9   1   1   4.7e-06    0.0054   16.7   0.1     1    50     6    55     6    61 0.91 TrkA-N domain
3HCDH_N              PF02737.13   180 sp|P27829|WECC_ECOLI -            420    0.0043   16.7   0.1   1   1   8.4e-06    0.0095   15.5   0.1     1    38     5    42     5    61 0.90 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
ApbA                 PF02558.11   151 sp|P27829|WECC_ECOLI -            420    0.0053   16.2   0.3   1   2   0.00011      0.13   11.7   0.1     1    77     6    85     6   142 0.74 Ketopantoate reductase PanE/ApbA
Methyltransf_25      PF13649.1    101 sp|P27829|WECC_ECOLI -            420     0.041   14.2   0.0   1   2   0.00054      0.62   10.4   0.0    14    42    17    44     9   117 0.71 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P27829|WECC_ECOLI -            420     0.058   13.4   0.0   1   1   0.00015      0.17   11.8   0.0    10   113    10   117     8   121 0.64 Methyltransferase domain
Pyr_redox            PF00070.22    80 sp|P27829|WECC_ECOLI -            420     0.065   13.6   0.1   1   1   0.00015      0.17   12.3   0.1     2    32     6    36     5    47 0.86 Pyridine nucleotide-disulphide oxidoreductase
Glyco_transf_56      PF07429.6    361 sp|P56258|WECF_ECOLI -            359  3.2e-193  641.5   0.0   1   1  4.8e-197  3.5e-193  641.4   0.0     1   360     1   358     1   359 0.99 4-alpha-L-fucosyltransferase glycosyl transferase group 56
Glyco_trans_1_4      PF13692.1    135 sp|P56258|WECF_ECOLI -            359   3.9e-06   27.0   0.0   2   2   1.2e-08   8.6e-05   22.7   0.0     4   129   187   324   185   330 0.72 Glycosyl transferases group 1
Glyco_tran_WecB      PF03808.8    172 sp|P27836|WECG_ECOLI -            246   1.5e-55  187.2   0.1   1   1   1.4e-59     2e-55  186.8   0.1     2   172    61   231    60   231 0.96 Glycosyl transferase WecB/TagA/CpsF family
Acyl_transf_3        PF01757.17   340 sp|P37669|WECH_ECOLI -            331   3.1e-34  118.3  34.6   1   1   5.1e-38   3.8e-34  118.0  34.6     2   339     6   318     5   322 0.87 Acyltransferase family
LMWPc                PF01451.16   138 sp|P0AAB2|WZB_ECOLI  -            147   2.9e-44  150.7   0.0   1   1   6.7e-48   3.3e-44  150.5   0.0     1   138     5   139     5   139 0.97 Low molecular weight phosphotyrosine protein phosphatase
CBP4                 PF07960.6    128 sp|P0AAB2|WZB_ECOLI  -            147     0.063   12.9   0.0   1   1   2.6e-05      0.13   11.8   0.0    29    48    15    34     4    38 0.84 CBP4
Polysacc_synt        PF01943.12   273 sp|P77377|WZXC_ECOLI -            492   3.8e-61  206.7  14.9   1   2     1e-64   3.8e-61  206.7  14.9     5   273    11   276     8   276 0.96 Polysaccharide biosynthesis protein
Polysacc_synt_3      PF13440.1    251 sp|P77377|WZXC_ECOLI -            492   7.9e-16   58.2  13.7   1   3   2.1e-19   7.9e-16   58.2  13.7     3   250    24   274    22   275 0.88 Polysaccharide biosynthesis protein
Polysacc_synt_C      PF14667.1    146 sp|P77377|WZXC_ECOLI -            492    0.0019   17.9  22.5   2   2   5.2e-07    0.0019   17.9  22.5     1   145   326   468   326   469 0.89 Polysaccharide biosynthesis C-terminal domain
Wzz                  PF02706.10   152 sp|P76387|WZC_ECOLI  -            720   6.7e-51  172.0   3.7   1   2   1.4e-53   1.6e-50  170.9   0.0     1   152    16   252    16   252 0.99 Chain length determinant protein
GNVR                 PF13807.1     82 sp|P76387|WZC_ECOLI  -            720   9.3e-30  102.2   0.9   1   1   8.2e-33   9.3e-30  102.2   0.9     1    81   367   447   367   448 0.98 G-rich domain on putative tyrosine kinase
AAA_31               PF13614.1    157 sp|P76387|WZC_ECOLI  -            720   3.5e-17   62.7   0.0   1   1   5.7e-20   6.5e-17   61.8   0.0     2   151   528   669   527   675 0.90 AAA domain
CbiA                 PF01656.18   195 sp|P76387|WZC_ECOLI  -            720   3.3e-12   46.2   0.0   1   1   8.7e-15   9.9e-12   44.6   0.0    10   161   538   701   529   716 0.69 CobQ/CobB/MinD/ParA nucleotide binding domain
AAA_26               PF13500.1    199 sp|P76387|WZC_ECOLI  -            720   7.2e-06   25.7   0.5   1   2   7.8e-05     0.089   12.3   0.1     3    31   529   557   527   561 0.88 AAA domain
AAA_26               PF13500.1    199 sp|P76387|WZC_ECOLI  -            720   7.2e-06   25.7   0.5   2   2   0.00023      0.26   10.8   0.0   131   167   661   697   641   711 0.87 AAA domain
ArsA_ATPase          PF02374.10   305 sp|P76387|WZC_ECOLI  -            720   6.8e-05   22.0   2.1   1   3   0.00053      0.61    9.0   0.1     4    38   529   564   526   566 0.84 Anion-transporting ATPase
SRP54                PF00448.17   196 sp|P76387|WZC_ECOLI  -            720   0.00017   21.0   0.1   1   2   2.4e-06    0.0027   17.1   0.1     2    40   527   566   526   603 0.89 SRP54-type protein, GTPase domain
Fer4_NifH            PF00142.13   273 sp|P76387|WZC_ECOLI  -            720   0.00092   18.4   0.3   1   1   2.1e-06    0.0024   17.1   0.1    11    59   538   586   533   602 0.89 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
YhjQ                 PF06564.7    244 sp|P76387|WZC_ECOLI  -            720    0.0029   17.0   0.0   1   1   7.6e-06    0.0087   15.4   0.0     3   181   528   707   526   713 0.71 YhjQ protein
AAA_25               PF13481.1    194 sp|P76387|WZC_ECOLI  -            720     0.039   13.3   0.0   1   1    0.0001      0.12   11.7   0.0    41   150   535   643   518   644 0.63 AAA domain
CDC48_2              PF02933.12    64 sp|P76387|WZC_ECOLI  -            720     0.085   12.5   0.1   1   1   0.00018       0.2   11.2   0.1    21    52   381   412   377   424 0.90 Cell division protein 48 (CDC48), domain 2
WzyE                 PF06899.6    449 sp|P27835|WZYE_ECOLI -            450  3.2e-277  919.3  44.7   1   1  2.4e-281  3.6e-277  919.1  44.7     1   448     1   449     1   450 1.00 WzyE protein
Poly_export          PF02563.11    83 sp|P0A930|WZA_ECOLI  -            379   6.6e-30  102.7   0.6   1   3   2.1e-32   1.6e-28   98.2   0.1     4    82    77   166    74   167 0.87 Polysaccharide biosynthesis/export protein
SLBB                 PF10531.4     59 sp|P0A930|WZA_ECOLI  -            379   3.9e-12   45.8   0.4   1   2     3e-09   2.3e-05   24.2   0.0     3    45   174   217   172   223 0.92 SLBB domain
SLBB                 PF10531.4     59 sp|P0A930|WZA_ECOLI  -            379   3.9e-12   45.8   0.4   2   2   1.2e-07   0.00087   19.1   0.1     1    48   256   305   256   314 0.88 SLBB domain
Wzz                  PF02706.10   152 sp|P0AG00|WZZE_ECOLI -            348   5.9e-15   55.4   1.7   1   1   1.7e-18   1.3e-14   54.3   1.7     1   113    15   188    15   247 0.69 Chain length determinant protein
GNVR                 PF13807.1     82 sp|P0AG00|WZZE_ECOLI -            348     0.015   15.0   0.2   2   2   1.8e-05      0.14   11.9   0.0    50    81   311   345   307   346 0.85 G-rich domain on putative tyrosine kinase
Wzz                  PF02706.10   152 sp|P76372|WZZB_ECOLI -            326   6.3e-19   68.2   6.0   1   3   2.1e-22   6.3e-19   68.2   6.0     1   151    16   154    16   206 0.81 Chain length determinant protein
GNVR                 PF13807.1     82 sp|P76372|WZZB_ECOLI -            326   0.00055   19.6   0.4   2   2   1.9e-07   0.00055   19.6   0.4    55    82   292   319   281   319 0.90 G-rich domain on putative tyrosine kinase
Xan_ur_permease      PF00860.15   389 sp|P67444|XANQ_ECOLI -            466  2.2e-110  368.7  44.5   1   1  3.5e-114  2.6e-110  368.5  44.5     1   389    22   416    22   416 0.98 Permease family
DUF3054              PF11255.3    112 sp|P67444|XANQ_ECOLI -            466       1.2    9.0   8.8   1   2   1.1e-05     0.083   12.7   3.1    25    99    28   103    20   107 0.83 Protein of unknown function (DUF3054)
Xan_ur_permease      PF00860.15   389 sp|P0AGM9|XANP_ECOLI -            463  4.8e-113  377.5  39.0   1   1  8.7e-117  6.5e-113  377.1  39.0     2   388    34   427    33   428 0.97 Permease family
SprB                 PF13573.1     37 sp|P0AGM9|XANP_ECOLI -            463      0.04   13.5   0.5   1   1   1.1e-05     0.081   12.5   0.5     3    20   327   344   325   345 0.90 SprB repeat
PNP_UDP_1            PF01048.15   234 sp|P45563|XAPA_ECOLI -            277   3.2e-40  137.5   0.5   1   1   2.4e-44   3.6e-40  137.4   0.5     1   233    27   273    27   274 0.92 Phosphorylase superfamily
Ald_Xan_dh_C2        PF02738.13   547 sp|Q46799|XDHA_ECOLI -            752  1.3e-175  584.8   0.0   1   1  2.2e-179  1.6e-175  584.5   0.0     8   547   141   687   134   687 0.98 Molybdopterin-binding domain of aldehyde dehydrogenase
Ald_Xan_dh_C         PF01315.17   111 sp|Q46799|XDHA_ECOLI -            752   5.2e-35  119.8   0.1   1   1   1.5e-38   1.1e-34  118.7   0.1     1   111    10   126    10   126 0.92 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
Ald_Xan_dh_C2        PF02738.13   547 sp|Q46814|XDHD_ECOLI -            956  2.8e-192  639.8   0.0   1   1  8.1e-196    4e-192  639.3   0.0    18   547   363   893   350   893 0.98 Molybdopterin-binding domain of aldehyde dehydrogenase
Ald_Xan_dh_C         PF01315.17   111 sp|Q46814|XDHD_ECOLI -            956   4.3e-31  107.2   0.0   1   1   1.8e-34   8.8e-31  106.2   0.0     2   111   187   298   186   298 0.96 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
Fer2_2               PF01799.15    75 sp|Q46814|XDHD_ECOLI -            956   7.7e-13   48.1   0.0   1   1   4.3e-16   2.1e-12   46.7   0.0     1    73    73   145    73   147 0.97 [2Fe-2S] binding domain
Phage_integrase      PF00589.17   173 sp|P0A8P6|XERC_ECOLI -            298     5e-50  169.5   0.0   1   1   2.8e-53   8.4e-50  168.8   0.0     3   172   114   281   112   282 0.97 Phage integrase family
Phage_int_SAM_1      PF02899.12    84 sp|P0A8P6|XERC_ECOLI -            298   8.5e-27   93.1   0.7   1   1   7.1e-30   2.1e-26   91.8   0.7     1    83     8    90     8    91 0.98 Phage integrase, N-terminal SAM-like domain
Phage_int_SAM_4      PF13495.1     85 sp|P0A8P6|XERC_ECOLI -            298   5.4e-06   26.6   0.2   1   1   2.4e-08   7.1e-05   23.0   0.2     3    81     9    90     4    93 0.87 Phage integrase, N-terminal SAM-like domain
Integrase_1          PF12835.2    187 sp|P0A8P6|XERC_ECOLI -            298     0.025   14.3   0.0   1   1   1.6e-05     0.047   13.4   0.0    37   152   139   252   133   262 0.79 Integrase
DUF3435              PF11917.3    418 sp|P0A8P6|XERC_ECOLI -            298     0.045   12.4   0.1   1   1   2.1e-05     0.062   12.0   0.1   170   235   212   275   201   294 0.76 Protein of unknown function (DUF3435)
Phage_integrase      PF00589.17   173 sp|P0A8P8|XERD_ECOLI -            298   1.8e-53  180.7   0.1   1   1   7.9e-57   2.9e-53  180.0   0.1     3   172   113   285   111   286 0.97 Phage integrase family
Phage_int_SAM_1      PF02899.12    84 sp|P0A8P8|XERD_ECOLI -            298   1.2e-24   86.2   3.3   1   2   3.2e-28   1.2e-24   86.2   3.3     1    84     8    90     8    90 0.99 Phage integrase, N-terminal SAM-like domain
Phage_int_SAM_4      PF13495.1     85 sp|P0A8P8|XERD_ECOLI -            298     1e-05   25.7   0.7   1   3   2.7e-09     1e-05   25.7   0.7     2    83     8    91     7    93 0.93 Phage integrase, N-terminal SAM-like domain
Integrase_1          PF12835.2    187 sp|P0A8P8|XERD_ECOLI -            298     0.015   15.0   0.6   1   1   1.3e-05      0.05   13.3   0.6    35   174   137   270   134   282 0.68 Integrase
Pribosyltran         PF00156.22   125 sp|P0A9M5|XGPT_ECOLI -            152   2.3e-11   43.4   0.0   1   1   2.3e-15   3.4e-11   42.9   0.0     2   112     4   105     3   112 0.87 Phosphoribosyl transferase domain
5_3_exonuc_N         PF02739.11   169 sp|P38506|XNI_ECOLI  -            251     3e-25   88.5   0.0   1   1     6e-29   4.4e-25   88.0   0.0    35   149    26   142     5   159 0.90 5'-3' exonuclease, N-terminal resolvase-like domain
5_3_exonuc           PF01367.15   101 sp|P38506|XNI_ECOLI  -            251     1e-23   83.4   0.0   1   1   2.1e-27   1.6e-23   82.8   0.0     1    91   160   249   160   251 0.97 5'-3' exonuclease, C-terminal SAM fold
AP_endonuc_2         PF01261.19   213 sp|P00944|XYLA_ECOLI -            440   1.4e-20   73.5   0.2   2   2   1.1e-23   1.7e-19   69.9   0.1    25   202   103   308    86   314 0.80 Xylose isomerase-like TIM barrel
FGGY_N               PF00370.16   245 sp|P09099|XYLB_ECOLI -            484   4.3e-90  301.3   0.0   1   1   1.2e-93   6.1e-90  300.8   0.0     1   245     1   240     1   240 0.99 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C               PF02782.11   198 sp|P09099|XYLB_ECOLI -            484     1e-33  116.6   1.5   1   1     3e-37   1.5e-33  116.1   1.5     1   197   249   435   249   436 0.92 FGGY family of carbohydrate kinases, C-terminal domain
BcrAD_BadFG          PF01869.15   271 sp|P09099|XYLB_ECOLI -            484   6.8e-05   22.2   0.0   1   2   6.6e-06     0.033   13.4   0.0     1    26     3    28     3   122 0.74 BadF/BadG/BcrA/BcrD ATPase family
Peripla_BP_4         PF13407.1    257 sp|P37387|XYLF_ECOLI -            330   1.8e-62  211.0  12.8   1   1   4.3e-66   2.1e-62  210.8  12.8    12   257    40   286    28   286 0.94 Periplasmic binding protein domain
Peripla_BP_1         PF00532.16   279 sp|P37387|XYLF_ECOLI -            330   3.2e-13   49.5   1.9   1   1   1.6e-16     8e-13   48.2   1.9    23   214    47   244    26   278 0.78 Periplasmic binding proteins and sugar binding domain of LacI family
Peripla_BP_3         PF13377.1    160 sp|P37387|XYLF_ECOLI -            330   8.2e-05   22.6   0.0   2   2     1e-07    0.0005   20.0   0.0    67   144   205   287   171   298 0.74 Periplasmic binding protein-like domain
Sugar_tr             PF00083.19   451 sp|P0AGF4|XYLE_ECOLI -            491  4.3e-145  483.7  30.3   1   1  6.6e-149  4.9e-145  483.5  30.3     2   451    14   478    13   478 0.97 Sugar (and other) transporter
MFS_1                PF07690.11   352 sp|P0AGF4|XYLE_ECOLI -            491     8e-25   87.2  41.1   1   2   6.9e-20   5.1e-16   58.3  15.6     5   220    29   291    17   301 0.73 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P0AGF4|XYLE_ECOLI -            491     8e-25   87.2  41.1   2   2     2e-12   1.5e-08   33.7  21.2     2   187   283   476   278   489 0.80 Major Facilitator Superfamily
ABC_tran             PF00005.22   137 sp|P37388|XYLG_ECOLI -            513   4.7e-53  179.1   0.4   1   2   9.4e-32   6.1e-29  101.0   0.1     2   137    21   171    20   171 0.95 ABC transporter
ABC_tran             PF00005.22   137 sp|P37388|XYLG_ECOLI -            513   4.7e-53  179.1   0.4   2   2   3.7e-24   2.4e-21   76.4   0.0     2   136   278   433   277   434 0.93 ABC transporter
AAA_21               PF13304.1    303 sp|P37388|XYLG_ECOLI -            513   3.5e-15   56.7   1.0   1   2   5.3e-09   3.4e-06   27.2   0.8     4   297    35   200    32   204 0.69 AAA domain
AAA_21               PF13304.1    303 sp|P37388|XYLG_ECOLI -            513   3.5e-15   56.7   1.0   2   2     9e-07   0.00058   19.9   0.0   220   295   389   461   337   463 0.82 AAA domain
SMC_N                PF02463.14   220 sp|P37388|XYLG_ECOLI -            513   8.3e-05   21.9   2.2   1   3   0.00086      0.56    9.4   0.1    25    44    31    50    12    56 0.83 RecF/RecN/SMC N terminal domain
UPF0079              PF02367.12   123 sp|P37388|XYLG_ECOLI -            513   0.00041   19.9   0.1   1   2    0.0002      0.13   11.9   0.0    10    36    25    51    17    63 0.87 Uncharacterised P-loop hydrolase UPF0079
SbcCD_C              PF13558.1     90 sp|P37388|XYLG_ECOLI -            513   0.00055   19.7   0.1   1   2   0.00023      0.15   11.9   0.0    51    89   148   186   143   187 0.83 Putative exonuclease SbcCD, C subunit
AAA_15               PF13175.1    415 sp|P37388|XYLG_ECOLI -            513    0.0007   18.7   3.1   1   2   0.00022      0.14   11.1   1.3    12   161    20   187     7   211 0.60 AAA ATPase domain
AAA_29               PF13555.1     62 sp|P37388|XYLG_ECOLI -            513   0.00079   18.9   0.0   1   1   3.3e-06    0.0021   17.5   0.0    17    40    25    47    18    55 0.82 P-loop containing region of AAA domain
AAA_22               PF13401.1    131 sp|P37388|XYLG_ECOLI -            513    0.0013   18.8   8.5   1   1   2.7e-06    0.0017   18.4   2.6     5   122    31   198    27   207 0.67 AAA domain
AAA_23               PF13476.1    202 sp|P37388|XYLG_ECOLI -            513    0.0019   18.5   0.1   1   1   7.8e-06     0.005   17.1   0.1    11    41    21    52     5    87 0.82 AAA domain
AAA_10               PF12846.2    304 sp|P37388|XYLG_ECOLI -            513    0.0026   17.2   0.2   1   2   0.00085      0.55    9.6   0.1     6    22    35    51    32    56 0.88 AAA-like domain
DUF258               PF03193.11   161 sp|P37388|XYLG_ECOLI -            513    0.0078   15.4   0.1   1   1     6e-05     0.039   13.1   0.0    22    59    16    54     5    91 0.73 Protein of unknown function, DUF258
AAA_25               PF13481.1    194 sp|P37388|XYLG_ECOLI -            513     0.031   13.6   0.1   1   1   0.00039      0.25   10.7   0.1    30    56    27    53    18   200 0.86 AAA domain
MobB                 PF03205.9    140 sp|P37388|XYLG_ECOLI -            513     0.036   13.7   0.1   1   2   0.00085      0.55    9.9   0.0     2    23    32    53    31    64 0.85 Molybdopterin guanine dinucleotide synthesis protein B
DUF2529              PF10740.4    172 sp|P37388|XYLG_ECOLI -            513      0.06   12.7   1.2   2   2    0.0014      0.89    8.9   0.1    95   146   442   493   437   505 0.86 Protein of unknown function (DUF2529)
AAA_17               PF13207.1    121 sp|P37388|XYLG_ECOLI -            513     0.072   13.9   0.4   1   1   0.00036      0.23   12.2   0.0     2    34    33    64    32   132 0.65 AAA domain
G-alpha              PF00503.15   389 sp|P37388|XYLG_ECOLI -            513     0.072   11.7   0.0   1   1   0.00014     0.093   11.3   0.0    63   108    35    80    31   247 0.74 G-protein alpha subunit
Arch_ATPase          PF01637.13   234 sp|P37388|XYLG_ECOLI -            513      0.14   11.8   0.2   1   1   0.00053      0.34   10.5   0.0    20    71    30    85    17   198 0.74 Archaeal ATPase
BPD_transp_2         PF02653.11   267 sp|P0AGI4|XYLH_ECOLI -            393   1.3e-50  171.8  42.6   2   2   2.6e-54   1.3e-50  171.8  42.6     2   267    57   383    56   383 0.98 Branched-chain amino acid transport system / permease component
Glyco_hydro_31       PF01055.21   441 sp|P31434|XYLS_ECOLI -            772  5.5e-127  424.2   3.2   1   1  1.6e-130  7.7e-127  423.7   3.2     1   440   240   668   240   669 0.98 Glycosyl hydrolases family 31
Gal_mutarotas_2      PF13802.1     68 sp|P31434|XYLS_ECOLI -            772   2.3e-18   65.8   1.1   1   1   1.7e-21   8.5e-18   63.9   0.1     1    67   159   218   159   219 0.94 Galactose mutarotase-like
DUF2812              PF11193.3    115 sp|P31434|XYLS_ECOLI -            772     0.095   12.8   0.1   1   1   4.6e-05      0.23   11.6   0.1    10    72   357   417   352   458 0.86 Protein of unknown function (DUF2812)
DUF328               PF03883.9    237 sp|P0A8I3|YAAA_ECOLI -            258  7.4e-100  333.0   0.0   1   1  5.7e-104  8.4e-100  332.9   0.0     1   237     1   245     1   245 0.99 Protein of unknown function (DUF328)
DUF2541              PF10807.3    134 sp|P28696|YAAI_ECOLI -            134   1.4e-76  254.7   1.1   1   1     2e-80   1.5e-76  254.6   1.1     1   134     1   134     1   134 1.00 Protein of unknown function (DUF2541)
DUF1478              PF07349.6    162 sp|P28696|YAAI_ECOLI -            134     0.046   13.0   0.1   1   1   7.4e-06     0.055   12.8   0.1    54   111    10    66     4    92 0.77 Protein of unknown function (DUF1478)
Sugar_tr             PF00083.19   451 sp|P31679|YAAU_ECOLI -            443   7.1e-52  176.4  26.5   1   1   1.8e-55     9e-52  176.1  26.5     9   449    26   434    21   436 0.91 Sugar (and other) transporter
MFS_1                PF07690.11   352 sp|P31679|YAAU_ECOLI -            443   1.1e-35  123.0  64.1   1   2     3e-37   1.5e-33  116.0  33.9     7   351    29   386    25   387 0.82 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P31679|YAAU_ECOLI -            443   1.1e-35  123.0  64.1   2   2   2.4e-08   0.00012   20.9  22.2    42   176   289   425   282   435 0.85 Major Facilitator Superfamily
MFS_2                PF13347.1    428 sp|P31679|YAAU_ECOLI -            443   9.6e-06   24.2  27.3   1   3   1.1e-08   5.4e-05   21.7   2.8   260   342    53   133    49   139 0.90 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P31679|YAAU_ECOLI -            443   9.6e-06   24.2  27.3   2   3   2.5e-05      0.12   10.7   6.8   141   337   141   356   132   361 0.68 MFS/sugar transport protein
Na_Ala_symp          PF01235.12   416 sp|P30143|YAAJ_ECOLI -            476  5.9e-187  621.3  19.6   1   1  4.6e-191  6.9e-187  621.1  19.6     2   415    41   457    40   458 0.99 Sodium:alanine symporter family
Ubiq_cyt_C_chap      PF03981.7    141 sp|P75617|YAAW_ECOLI -            237   2.2e-23   82.6   0.2   1   1   1.1e-26   3.4e-23   82.0   0.2     1   139    58   220    58   225 0.96 Ubiquinol-cytochrome C chaperone
DUF3944              PF13099.1     35 sp|P75617|YAAW_ECOLI -            237     9e-15   53.8   0.8   1   2     3e-18     9e-15   53.8   0.8     1    35     5    39     5    39 0.99 Domain of unknown function (DUF3944)
Sdh5                 PF03937.11    74 sp|P75617|YAAW_ECOLI -            237    0.0046   16.6   1.6   2   2   0.00027      0.81    9.4   0.4    20    45   117   142    98   163 0.85 Flavinator of succinate dehydrogenase
UPF0444              PF15475.1     92 sp|P75617|YAAW_ECOLI -            237     0.044   13.8   0.5   1   1   2.5e-05     0.074   13.1   0.5    24    54   197   227   178   236 0.81 Transmembrane protein C12orf23, UPF0444
AbiH                 PF14253.1    270 sp|P75617|YAAW_ECOLI -            237     0.065   12.8   0.3   1   1   4.1e-05      0.12   11.9   0.2    20   132    12   149     9   153 0.72 Bacteriophage abortive infection AbiH
SNARE_assoc          PF09335.6    123 sp|P30149|YABI_ECOLI -            254     3e-19   69.4   2.2   1   2     4e-23     3e-19   69.4   2.2     1   121    36   159    36   161 0.92 SNARE associated Golgi protein
DUF2681              PF10883.3     87 sp|P30149|YABI_ECOLI -            254     0.036   14.2   0.0   2   2    0.0001      0.75   10.0   0.0     8    36   181   209   176   211 0.88 Protein of unknown function (DUF2681)
DUF329               PF03884.9     57 sp|P0A8H8|YACG_ECOLI -             65   2.4e-26   91.0   1.7   1   1     6e-30     3e-26   90.7   1.7     2    56     6    62     3    63 0.92 Domain of unknown function (DUF329)
UPF0231              PF06062.6    121 sp|P0A8E5|YACL_ECOLI -            120     2e-41  140.6   2.4   1   1     3e-45   2.2e-41  140.5   2.4     1   121     1   118     1   118 0.99 Uncharacterised protein family (UPF0231)
Hpt                  PF01627.18    90 sp|P0A8E5|YACL_ECOLI -            120      0.03   14.3   0.1   1   2   2.9e-05      0.22   11.5   0.0    26    42    36    52    22    57 0.82 Hpt domain
Fimbrial             PF00419.15   145 sp|P31058|YADC_ECOLI -            412   2.1e-13   50.6   7.0   2   2   2.9e-17   2.1e-13   50.6   7.0     3   144   242   411   240   412 0.71 Fimbrial protein
Transposase_31       PF04754.7    205 sp|P31665|YADD_ECOLI -            300   7.9e-81  270.3   0.3   1   1     3e-84   1.1e-80  269.8   0.3     1   203     7   207     7   209 0.98 Putative transposase, YhgA-like
DUF2802              PF10975.3     70 sp|P31665|YADD_ECOLI -            300     0.016   14.9   0.1   1   1   1.1e-05     0.042   13.6   0.1    26    67   258   299   240   300 0.83 Protein of unknown function (DUF2802)
HTH_3                PF01381.17    55 sp|P31665|YADD_ECOLI -            300      0.13   12.1   0.0   1   1   0.00012      0.43   10.4   0.0     3    30   270   297   268   298 0.80 Helix-turn-helix
ABC_tran             PF00005.22   137 sp|P36879|YADG_ECOLI -            308   1.6e-31  109.4   0.0   1   1   2.4e-34   2.7e-31  108.6   0.0     1   137    21   165    21   165 0.95 ABC transporter
AAA_21               PF13304.1    303 sp|P36879|YADG_ECOLI -            308   2.3e-15   57.3   0.3   1   2   2.2e-05     0.025   14.5   0.3     2    24    34    56    33   119 0.75 AAA domain
AAA_21               PF13304.1    303 sp|P36879|YADG_ECOLI -            308   2.3e-15   57.3   0.3   2   2   1.9e-13   2.1e-10   41.0   0.0   232   298   132   195    86   198 0.83 AAA domain
AAA_15               PF13175.1    415 sp|P36879|YADG_ECOLI -            308   0.00021   20.4   0.0   2   2   1.5e-05     0.017   14.1   0.0   372   410   157   194   145   196 0.90 AAA ATPase domain
AAA_29               PF13555.1     62 sp|P36879|YADG_ECOLI -            308    0.0011   18.4   0.1   1   1   2.1e-06    0.0024   17.3   0.1    19    43    28    51    19    63 0.75 P-loop containing region of AAA domain
SMC_N                PF02463.14   220 sp|P36879|YADG_ECOLI -            308     0.002   17.4   0.1   1   1   8.6e-05     0.098   11.8   0.1    25   210    32   207    18   216 0.52 RecF/RecN/SMC N terminal domain
AAA_23               PF13476.1    202 sp|P36879|YADG_ECOLI -            308    0.0043   17.3   0.3   1   1     5e-06    0.0057   17.0   0.3    21    68    33    99    17   304 0.76 AAA domain
SRP54                PF00448.17   196 sp|P36879|YADG_ECOLI -            308     0.005   16.3   0.0   1   1   8.2e-06    0.0094   15.4   0.0     4    61    34    93    32   114 0.81 SRP54-type protein, GTPase domain
AAA_10               PF12846.2    304 sp|P36879|YADG_ECOLI -            308    0.0088   15.5   0.2   1   2   0.00033      0.37   10.1   0.1     5    51    35    83    33   136 0.82 AAA-like domain
AAA_22               PF13401.1    131 sp|P36879|YADG_ECOLI -            308     0.016   15.3   0.7   1   1   0.00048      0.55   10.3   0.4     6   125    33   195    28   202 0.59 AAA domain
CelD_N               PF02927.9     91 sp|P36879|YADG_ECOLI -            308     0.043   14.0   0.0   1   1   8.6e-05     0.099   12.9   0.0     7    32    94   119    90   139 0.87 N-terminal ig-like domain of cellulase
SbcCD_C              PF13558.1     90 sp|P36879|YADG_ECOLI -            308     0.046   13.6   0.0   1   1   0.00016      0.18   11.7   0.0    62    89   153   180   112   181 0.82 Putative exonuclease SbcCD, C subunit
AAA_30               PF13604.1    196 sp|P36879|YADG_ECOLI -            308     0.082   12.4   0.0   1   1    0.0002      0.23   11.0   0.0    17    51    31    64    23    82 0.79 AAA domain
DUF258               PF03193.11   161 sp|P36879|YADG_ECOLI -            308      0.14   11.3   0.1   1   1   0.00034      0.38    9.9   0.1    35    67    30    63     7    67 0.82 Protein of unknown function, DUF258
ABC2_membrane        PF01061.19   210 sp|P0AFN6|YADH_ECOLI -            256   3.8e-36  124.2  24.8   1   2   5.2e-40   3.8e-36  124.2  24.8     3   210     9   219     7   219 0.93 ABC-2 type transporter
ABC2_membrane_3      PF12698.2    344 sp|P0AFN6|YADH_ECOLI -            256   9.4e-08   31.4  29.2   2   2   1.3e-11   9.4e-08   31.4  29.2   157   343    57   245    44   245 0.87 ABC-2 family transporter protein
Fimbrial             PF00419.15   145 sp|P37016|YADK_ECOLI -            198   5.1e-07   30.0   1.1   1   1     4e-11   5.9e-07   29.8   1.1     2   144    33   197    32   198 0.79 Fimbrial protein
Fimbrial             PF00419.15   145 sp|P37017|YADL_ECOLI -            201   2.5e-17   63.4  11.5   1   1     2e-21     3e-17   63.1  11.5     6   145    40   201    33   201 0.76 Fimbrial protein
Fimbrial             PF00419.15   145 sp|P37018|YADM_ECOLI -            189   7.9e-22   78.0   5.2   1   1   6.5e-26   9.7e-22   77.7   5.2     1   145    28   189    28   189 0.92 Fimbrial protein
Fimbrial             PF00419.15   145 sp|P37050|YADN_ECOLI -            194   8.8e-15   55.1   9.8   1   1   7.4e-19   1.1e-14   54.8   9.8     2   145    31   194    30   194 0.80 Fimbrial protein
UPF0126              PF03458.8     81 sp|P0AFP0|YADS_ECOLI -            207   5.8e-49  163.6  19.4   1   2   6.9e-30   5.1e-26   90.1   3.8     2    78     4    80     3    83 0.97 UPF0126 domain
UPF0126              PF03458.8     81 sp|P0AFP0|YADS_ECOLI -            207   5.8e-49  163.6  19.4   2   2   1.6e-26   1.2e-22   79.3   7.6     3    76    92   164    90   169 0.94 UPF0126 domain
AzlD                 PF05437.7     99 sp|P0AFP0|YADS_ECOLI -            207      0.01   15.7   1.2   2   3   1.4e-06      0.01   15.7   1.2    10    57    66   114    65   137 0.81 Branched-chain amino acid transport protein (AzlD)
PapD_N               PF00345.15   122 sp|P33128|YADV_ECOLI -            246   9.3e-44  148.1   0.0   1   2   3.4e-47   2.6e-43  146.7   0.1     2   122    27   152    26   152 0.93 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_C               PF02753.12    68 sp|P33128|YADV_ECOLI -            246   1.4e-19   69.6   0.2   1   1   3.6e-23   2.7e-19   68.7   0.2     1    66   175   242   175   244 0.96 Pili assembly chaperone PapD, C-terminal domain
DUF3461              PF11944.3    125 sp|P62768|YAEH_ECOLI -            128     7e-59  197.1   2.9   1   1   1.6e-62   7.8e-59  196.9   2.9     1   125     1   125     1   125 1.00 Protein of unknown function (DUF3461)
DASH_Dad3            PF08656.5     78 sp|P62768|YAEH_ECOLI -            128     0.033   13.8   0.3   1   1   1.5e-05     0.074   12.7   0.2    11    48    68   109    64   116 0.78 DASH complex subunit Dad3
CAF1-p150_N          PF15557.1    229 sp|P62768|YAEH_ECOLI -            128     0.086   12.1   0.0   1   1     2e-05     0.099   11.9   0.0    58   107    66   116    35   122 0.82 CAF1 complex subunit p150, region binding to PCNA
Metallophos          PF00149.23   200 sp|P37049|YAEI_ECOLI -            270   2.3e-09   36.9   0.1   1   1   1.4e-12   7.1e-09   35.3   0.1     1   198    49   211    49   213 0.89 Calcineurin-like phosphoesterase
Metallophos_2        PF12850.2    156 sp|P37049|YAEI_ECOLI -            270   1.3e-08   34.8   0.0   1   1   3.5e-12   1.7e-08   34.4   0.0     2   123    50   215    49   246 0.65 Calcineurin-like phosphoesterase superfamily domain
TAT_signal           PF10518.4     26 sp|P37049|YAEI_ECOLI -            270     0.014   15.3   1.1   1   1     6e-06     0.029   14.3   1.1     2    20     2    20     1    22 0.88 TAT (twin-arginine translocation) pathway signal sequence
UPF0253              PF06786.7     66 sp|P0A8K5|YAEP_ECOLI -             66   1.8e-35  120.8   1.8   1   1   1.3e-39     2e-35  120.7   1.8     1    66     1    66     1    66 0.99 Uncharacterised protein family (UPF0253)
Exo_endo_phos        PF03372.18   249 sp|P0A8U2|YAFD_ECOLI -            266   3.9e-12   46.6   0.4   1   1   9.2e-16   6.8e-12   45.8   0.4     2   249    48   252    47   252 0.65 Endonuclease/Exonuclease/phosphatase family
Exo_endo_phos_2      PF14529.1    119 sp|P0A8U2|YAFD_ECOLI -            266    0.0013   18.3   0.0   1   1   4.7e-07    0.0035   16.9   0.0    29   118   179   255   152   256 0.72 Endonuclease-reverse transcriptase
Methyltransf_11      PF08241.7     95 sp|P30866|YAFE_ECOLI -            207   7.8e-21   74.3   0.0   1   1     1e-23   1.3e-20   73.7   0.0     4    95     3    96     2    96 0.94 Methyltransferase domain
Ubie_methyltran      PF01209.13   233 sp|P30866|YAFE_ECOLI -            207   2.7e-14   52.8   0.0   1   1     3e-17   3.7e-14   52.4   0.0    70   158    15   103     9   114 0.92 ubiE/COQ5 methyltransferase family
Methyltransf_31      PF13847.1    152 sp|P30866|YAFE_ECOLI -            207   2.4e-13   49.9   0.0   1   1   2.3e-16   2.9e-13   49.6   0.0    16   113     8   109     6   187 0.82 Methyltransferase domain
Methyltransf_23      PF13489.1    161 sp|P30866|YAFE_ECOLI -            207   9.3e-13   48.2   0.0   1   1   9.8e-16   1.2e-12   47.8   0.0    43   158    16   142     9   145 0.85 Methyltransferase domain
Methyltransf_18      PF12847.2    112 sp|P30866|YAFE_ECOLI -            207   7.6e-10   39.3   0.0   1   1   1.4e-12   1.8e-09   38.1   0.0    13   109     7    96     3    99 0.86 Methyltransferase domain
Methyltransf_12      PF08242.7     99 sp|P30866|YAFE_ECOLI -            207   3.3e-09   37.1   0.0   1   1   4.3e-12   5.3e-09   36.4   0.0    20    99    17    94     6    94 0.87 Methyltransferase domain
Methyltransf_25      PF13649.1    101 sp|P30866|YAFE_ECOLI -            207   5.2e-09   36.3   0.0   1   1   7.2e-12     9e-09   35.6   0.0    18   101    16    92     5    92 0.88 Methyltransferase domain
Methyltransf_8       PF05148.10   219 sp|P30866|YAFE_ECOLI -            207   7.4e-05   22.4   0.0   1   1   7.8e-08   9.7e-05   22.0   0.0   115   164    54   104    14   134 0.85 Hypothetical methyltransferase
Methyltransf_26      PF13659.1    117 sp|P30866|YAFE_ECOLI -            207   0.00012   22.0   0.3   1   1     2e-07   0.00025   21.0   0.3    16   113    11    96     6    98 0.88 Methyltransferase domain
Methyltransf_29      PF03141.11   506 sp|P30866|YAFE_ECOLI -            207   0.00082   17.8   0.0   1   1   8.1e-07     0.001   17.5   0.0   172   218    52    97    10   122 0.80 Putative S-adenosyl-L-methionine-dependent methyltransferase
CmcI                 PF04989.7    206 sp|P30866|YAFE_ECOLI -            207     0.055   12.7   0.0   1   1   6.1e-05     0.075   12.3   0.0   110   193    61   150    12   161 0.66 Cephalosporin hydroxylase
NNMT_PNMT_TEMT       PF01234.12   256 sp|P30866|YAFE_ECOLI -            207     0.067   12.1   0.0   1   1   7.6e-05     0.094   11.6   0.0   167   202    66   101    23   104 0.81 NNMT/PNMT/TEMT family
PhdYeFM_antitox      PF02604.14    75 sp|Q47156|YAFN_ECOLI -             97   1.6e-09   37.1   0.1   1   1     2e-13     3e-09   36.3   0.1     2    73     8    74     7    79 0.90 Antitoxin Phd_YefM, type II toxin-antitoxin system
NLPC_P60             PF00877.14   105 sp|Q47151|YAFL_ECOLI -            249   4.6e-31  106.7   0.0   1   1   2.3e-34   8.4e-31  105.9   0.0     1   105   131   241   131   241 0.98 NlpC/P60 family
DUF1175              PF06672.6    217 sp|Q47151|YAFL_ECOLI -            249   1.9e-05   24.1   2.3   2   3   3.1e-05      0.12   11.7   0.0    50    75   142   167   118   179 0.81 Protein of unknown function (DUF1175)
DUF830               PF05708.7    158 sp|Q47151|YAFL_ECOLI -            249    0.0095   15.9   0.0   1   2     2e-05     0.072   13.0   0.0    84   135   121   171   108   192 0.75 Orthopoxvirus protein of unknown function (DUF830)
LRAT                 PF04970.8    126 sp|Q47151|YAFL_ECOLI -            249     0.018   15.0   0.0   1   1   1.2e-05     0.043   13.7   0.0     6    40   182   219   178   237 0.78 Lecithin retinol acyltransferase
Acetyltransf_10      PF13673.1    117 sp|Q47158|YAFP_ECOLI -            150   6.1e-21   74.7   0.0   1   1     3e-24   7.4e-21   74.4   0.0     1   117    13   124    13   124 0.92 Acetyltransferase (GNAT) domain
Acetyltransf_7       PF13508.1     79 sp|Q47158|YAFP_ECOLI -            150   9.4e-09   35.3   0.0   1   1   6.5e-12   1.6e-08   34.5   0.0     2    78    55   125    54   126 0.90 Acetyltransferase (GNAT) domain
Acetyltransf_9       PF13527.1    127 sp|Q47158|YAFP_ECOLI -            150   4.8e-07   29.6   0.0   1   1   8.7e-09   2.2e-05   24.3   0.0     1   127     5   127     5   127 0.93 Acetyltransferase (GNAT) domain
Acetyltransf_1       PF00583.19    83 sp|Q47158|YAFP_ECOLI -            150   7.8e-07   29.0   0.0   1   1   7.4e-10   1.8e-06   27.8   0.0    24    83    74   125    37   125 0.79 Acetyltransferase (GNAT) family
Acetyltransf_3       PF13302.1    142 sp|Q47158|YAFP_ECOLI -            150    0.0016   18.6   0.0   1   1   8.7e-07    0.0021   18.1   0.0     2   110     4   102     3   135 0.73 Acetyltransferase (GNAT) domain
FR47                 PF08445.5     86 sp|Q47158|YAFP_ECOLI -            150     0.035   13.8   0.0   1   1   6.1e-05      0.15   11.8   0.0    23    81    77   128    60   132 0.72 FR47-like protein
CN_hydrolase         PF00795.17   186 sp|Q47679|YAFV_ECOLI -            256   1.2e-12   47.6   0.0   1   1     1e-16   1.5e-12   47.2   0.0     4   180     8   160     5   201 0.86 Carbon-nitrogen hydrolase
DUF932               PF06067.6    239 sp|P77206|YAFZ_ECOLI -            273   8.3e-67  224.9   0.0   1   1   6.4e-71   9.5e-67  224.7   0.0     1   239    37   262    37   262 0.99 Domain of unknown function (DUF932)
YagB_YeeU_YfjZ       PF06154.6    105 sp|Q47684|YAFW_ECOLI -            105   3.9e-54  181.3   0.0   1   1   5.7e-58   4.2e-54  181.2   0.0     2   104     2   104     1   105 0.98 YagB/YeeU/YfjZ family
Alpha-2-MRAP_C       PF06401.6    214 sp|Q47684|YAFW_ECOLI -            105     0.017   14.9   0.0   1   1   3.2e-06     0.023   14.5   0.0     6    36    25    55    21    65 0.90 Alpha-2-macroglobulin RAP, C-terminal domain
YkuD                 PF03734.9    144 sp|P0AA99|YAFK_ECOLI -            246     3e-07   30.7   0.5   1   2   4.5e-11   6.6e-07   29.6   0.1     3   137    45   159    43   173 0.72 L,D-transpeptidase catalytic domain
DHDPS                PF00701.17   289 sp|P75682|YAGE_ECOLI -            302     4e-85  284.9   0.0   1   1   9.1e-89   4.5e-85  284.7   0.0     2   288     7   299     6   300 0.98 Dihydrodipicolinate synthetase family
PA                   PF02225.17   101 sp|P75682|YAGE_ECOLI -            302     0.015   14.9   0.1   1   1   7.9e-06     0.039   13.6   0.0    47    87    91   136    63   147 0.77 PA domain
YagB_YeeU_YfjZ       PF06154.6    105 sp|P37008|YAGB_ECOLI -            116   6.9e-53  177.3   0.0   1   1   5.3e-57   7.9e-53  177.1   0.0     2   103     5   106     4   108 0.98 YagB/YeeU/YfjZ family
Antirestrict         PF03230.8     94 sp|P75676|YAFX_ECOLI -            152   9.9e-40  134.4   0.2   1   1   9.8e-44   1.5e-39  133.9   0.2     1    94    57   152    57   152 0.97 Antirestriction protein
ILVD_EDD             PF00920.16   521 sp|P77596|YAGF_ECOLI -            655  1.6e-149  498.6   0.1   1   1  1.3e-153  1.9e-149  498.4   0.1    12   492    84   603    63   635 0.89 Dehydratase family
MFS_2                PF13347.1    428 sp|P75683|YAGG_ECOLI -            460  2.5e-125  418.2  30.5   1   1  3.9e-129  2.9e-125  418.0  30.5     2   428     9   430     7   430 0.99 MFS/sugar transport protein
MFS_1                PF07690.11   352 sp|P75683|YAGG_ECOLI -            460   1.2e-10   40.6  27.4   1   2   1.6e-14   1.2e-10   40.6  27.4     9   328    20   346    14   355 0.80 Major Facilitator Superfamily
Glyco_hydro_43       PF04616.9    286 sp|P77713|YAGH_ECOLI -            536    3e-109  364.5   0.4   1   1  7.9e-113  3.9e-109  364.1   0.4     1   286     3   303     3   303 0.98 Glycosyl hydrolases family 43
DUF1349              PF07081.6    183 sp|P77713|YAGH_ECOLI -            536   6.8e-08   32.0   0.1   1   1   2.8e-11   1.4e-07   31.0   0.1    49   177   390   535   368   536 0.83 Protein of unknown function (DUF1349)
Ald_Xan_dh_C2        PF02738.13   547 sp|P77489|YAGR_ECOLI -            732  2.1e-142  475.2   0.1   1   1  5.6e-146  2.8e-142  474.8   0.1     7   547   152   668   142   668 0.97 Molybdopterin-binding domain of aldehyde dehydrogenase
Ald_Xan_dh_C         PF01315.17   111 sp|P77489|YAGR_ECOLI -            732   2.2e-24   85.6   1.1   1   1   9.6e-28   4.7e-24   84.5   1.1     1   110    34   137    34   138 0.94 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ADH_zinc_N           PF00107.21   130 sp|P75691|YAHK_ECOLI -            349   1.4e-28   99.0   0.1   1   1   1.7e-31   2.3e-28   98.3   0.1     1   129   185   308   185   309 0.97 Zinc-binding dehydrogenase
ADH_N                PF08240.7    109 sp|P75691|YAHK_ECOLI -            349   4.4e-28   97.2   5.4   1   1   6.2e-31   8.4e-28   96.3   5.4     1   108    27   142    27   143 0.96 Alcohol dehydrogenase GroES-like domain
2-Hacid_dh_C         PF02826.14   178 sp|P75691|YAHK_ECOLI -            349   1.3e-05   24.4   0.0   1   1   1.6e-08   2.1e-05   23.7   0.0    36    96   175   242   165   253 0.72 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
ADH_zinc_N_2         PF13602.1    127 sp|P75691|YAHK_ECOLI -            349   1.9e-05   25.5   0.0   1   1   1.1e-07   0.00015   22.6   0.0     1   119   217   334   217   337 0.65 Zinc-binding dehydrogenase
NAD_binding_2        PF03446.10   163 sp|P75691|YAHK_ECOLI -            349   0.00017   21.4   0.2   1   1   2.8e-07   0.00038   20.3   0.2     4    76   181   256   176   288 0.74 NAD binding domain of 6-phosphogluconate dehydrogenase
AlaDh_PNT_C          PF01262.16   168 sp|P75691|YAHK_ECOLI -            349    0.0006   19.4   0.1   1   1   7.8e-07    0.0011   18.6   0.1    21   107   176   242   171   263 0.80 Alanine dehydrogenase/PNT, C-terminal domain
Oxidored_nitro       PF00148.14   398 sp|P75691|YAHK_ECOLI -            349    0.0033   16.1   0.0   1   1   3.5e-06    0.0048   15.6   0.0   271   339   175   237   147   258 0.85 Nitrogenase component 1 type Oxidoreductase
Shikimate_DH         PF01488.15   135 sp|P75691|YAHK_ECOLI -            349     0.012   15.7   0.0   1   1   1.8e-05     0.024   14.7   0.0    12    88   175   250   168   276 0.81 Shikimate / quinate 5-dehydrogenase
Methyltransf_11      PF08241.7     95 sp|P75691|YAHK_ECOLI -            349     0.023   15.1   0.1   1   1   3.7e-05     0.049   14.1   0.1     4    81   182   259   180   261 0.79 Methyltransferase domain
3HCDH_N              PF02737.13   180 sp|P75691|YAHK_ECOLI -            349     0.067   12.8   0.3   1   1   7.8e-05       0.1   12.2   0.3     1    56   177   232   177   256 0.74 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
ELFV_dehydrog        PF00208.16   244 sp|P75691|YAHK_ECOLI -            349     0.081   12.4   0.0   1   1    0.0001      0.14   11.7   0.0    32    83   175   226   165   253 0.78 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
LysE                 PF01810.13   191 sp|P75693|YAHN_ECOLI -            223     2e-53  180.5  11.2   1   1   3.3e-57   2.4e-53  180.2  11.2     2   191    29   219    28   219 0.99 LysE type translocator
TerC                 PF03741.11   184 sp|P75693|YAHN_ECOLI -            223    0.0048   16.3   5.6   1   1   2.7e-06      0.02   14.3   5.6    30   154    50   219    36   222 0.68 Integral membrane protein TerC family
DUF1471              PF07338.8     56 sp|P75694|YAHO_ECOLI -             91   1.1e-16   60.1   0.6   1   1   5.2e-20   1.5e-16   59.7   0.6     1    56    36    89    36    89 0.98 Protein of unknown function (DUF1471)
DUF4156              PF13698.1     93 sp|P75694|YAHO_ECOLI -             91    0.0045   16.8   0.2   1   1   2.1e-06    0.0061   16.4   0.2    31    75    35    79    31    90 0.81 Domain of unknown function (DUF4156)
PGM_PMM_II           PF02879.11   104 sp|P75694|YAHO_ECOLI -             91     0.018   15.3   0.0   1   1   7.4e-06     0.022   15.0   0.0    30    95    14    78     3    81 0.88 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
Ferrochelatase       PF00762.14   316 sp|P75694|YAHO_ECOLI -             91      0.08   11.8   0.0   1   1     3e-05     0.088   11.7   0.0    39    91    18    71     4    79 0.82 Ferrochelatase
FliP                 PF00813.15   194 sp|P75694|YAHO_ECOLI -             91      0.15   11.7   0.1   1   1   5.4e-05      0.16   11.6   0.1    37   112     3    78     1    89 0.87 FliP family
DUF1255              PF06865.6     94 sp|P0C037|YAIE_ECOLI -             94   5.8e-35  119.4   0.0   1   1   4.3e-39   6.4e-35  119.3   0.0     1    94     1    94     1    94 0.98 Protein of unknown function (DUF1255)
DUF188               PF02639.9    130 sp|P0A8D3|YAII_ECOLI -            152   1.1e-50  170.3   0.0   1   1   8.8e-55   1.3e-50  170.1   0.0     1   127    17   143    17   146 0.98 Uncharacterized BCR, YaiI/YqxD family COG1671
PIG-L                PF02585.12   128 sp|P71311|YAIS_ECOLI -            185   1.1e-24   87.3   1.4   1   1   9.5e-29   1.4e-24   87.0   1.4     1   127    20   141    20   142 0.94 GlcNAc-PI de-N-acetylase
Hexapep              PF00132.19    36 sp|P75697|YAIX_ECOLI -            230   9.9e-18   62.7  28.6   1   6   1.5e-05     0.074   12.5   3.4    18    35    64    81    48    82 0.83 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P75697|YAIX_ECOLI -            230   9.9e-18   62.7  28.6   2   6   7.3e-13   3.6e-09   35.7   4.9     2    35    66    99    65   100 0.96 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P75697|YAIX_ECOLI -            230   9.9e-18   62.7  28.6   3   6     6e-10   2.9e-06   26.5   3.0     2    34    84   116    83   118 0.91 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P75697|YAIX_ECOLI -            230   9.9e-18   62.7  28.6   4   6   2.3e-06     0.012   15.1   0.8     1    35   101   134   101   135 0.94 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P75697|YAIX_ECOLI -            230   9.9e-18   62.7  28.6   5   6   3.1e-05      0.15   11.5   0.0     1    32   118   148   118   152 0.69 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P75697|YAIX_ECOLI -            230   9.9e-18   62.7  28.6   6   6   5.8e-06     0.029   13.8   0.0     1    35   177   211   177   212 0.95 Bacterial transferase hexapeptide (six repeats)
Hexapep_2            PF14602.1     34 sp|P75697|YAIX_ECOLI -            230   7.9e-06   25.3  13.2   2   4   4.8e-08   0.00024   20.6   1.4     1    27    83   111    83   112 0.97 Hexapeptide repeat of succinyl-transferase
FlgI                 PF02119.11   342 sp|P75697|YAIX_ECOLI -            230     0.023   13.3   1.5   1   1   6.7e-06     0.033   12.8   1.4   225   260    51    86    32   126 0.82 Flagellar P-ring protein
YajC                 PF02699.10    83 sp|P0ADZ7|YAJC_ECOLI -            110     4e-28   96.9   0.4   1   1     2e-31   5.1e-28   96.5   0.4     2    83    20   102    19   102 0.96 Preprotein translocase subunit
MreC                 PF04085.9    152 sp|P0ADZ7|YAJC_ECOLI -            110    0.0016   17.9   0.1   1   1   7.9e-07     0.002   17.5   0.1    22    58    54    90    49   108 0.81 rod shape-determining protein MreC
DUF912               PF06024.7    101 sp|P0ADZ7|YAJC_ECOLI -            110     0.003   17.5   0.0   1   1     2e-06     0.005   16.8   0.0    70    98    22    50    19    53 0.83 Nucleopolyhedrovirus protein of unknown function (DUF912)
DUF1956              PF09209.6    125 sp|P0ADZ7|YAJC_ECOLI -            110     0.053   13.4   0.0   1   1   2.9e-05     0.073   13.0   0.0    62   102    11    52     5    63 0.82 Domain of unknown function (DUF1956)
T2SM                 PF04612.7    160 sp|P0ADZ7|YAJC_ECOLI -            110      0.11   12.2   0.0   1   1   5.1e-05      0.13   12.0   0.0    20    50    23    53    20    81 0.88 Type II secretion system (T2SS), protein M
DUF4525              PF15027.1    139 sp|P0ADZ7|YAJC_ECOLI -            110      0.17   11.3   1.3   1   1    0.0001      0.26   10.8   1.3    12    42    22    50    14    94 0.84 Domain of unknown function (DUF4525)
DJ-1_PfpI            PF01965.19   147 sp|Q46948|YAJL_ECOLI -            196   2.4e-34  117.9   0.0   1   1   6.2e-38   3.1e-34  117.5   0.0     2   146    32   172    31   173 0.94 DJ-1/PfpI family
DUF4066              PF13278.1    166 sp|Q46948|YAJL_ECOLI -            196     4e-07   29.4   0.1   1   1     2e-10     1e-06   28.1   0.1     4   164    11   168     8   170 0.73 Putative amidotransferase
GATase_3             PF07685.9    158 sp|Q46948|YAJL_ECOLI -            196     0.041   13.4   0.0   1   1   1.9e-05     0.093   12.3   0.0     6    50    65   107    61   109 0.87 CobB/CobQ-like glutamine amidotransferase domain
Aldo_ket_red         PF00248.16   283 sp|P77735|YAJO_ECOLI -            324   1.8e-76  256.7   0.0   1   1   2.7e-80     2e-76  256.5   0.0     1   280    15   313    15   316 0.94 Aldo/keto reductase family
HAD_2                PF13419.1    176 sp|P77735|YAJO_ECOLI -            324     0.074   13.2   0.1   1   1   1.8e-05      0.13   12.4   0.1    15   122    69   179    54   194 0.75 Haloacid dehalogenase-like hydrolase
DUF520               PF04461.8    160 sp|P0A8E7|YAJQ_ECOLI -            163   4.3e-66  221.6   3.7   1   1   9.8e-70   4.8e-66  221.5   3.7     1   160     1   162     1   162 0.99 Protein of unknown function (DUF520)
Sec2p                PF06428.6    101 sp|P0A8E7|YAJQ_ECOLI -            163      0.16   11.8   4.0   1   2   4.3e-05      0.21   11.4   1.4    33    81    13    65    11   111 0.83 GDP/GTP exchange factor Sec2p
MFS_1                PF07690.11   352 sp|P77726|YAJR_ECOLI -            454   4.6e-44  150.5  58.7   1   2   2.7e-41   5.6e-38  130.5  38.6     4   343    20   346    17   347 0.79 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P77726|YAJR_ECOLI -            454   4.6e-44  150.5  58.7   2   2   5.9e-12   1.3e-08   34.0  12.1    62   178   278   393   276   425 0.84 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P77726|YAJR_ECOLI -            454   5.3e-09   35.1  32.8   1   2   2.8e-12   5.9e-09   35.0  15.1    43   194    45   189    14   198 0.87 Sugar (and other) transporter
MFS_2                PF13347.1    428 sp|P77726|YAJR_ECOLI -            454   4.5e-05   22.0  36.9   1   3   6.9e-07    0.0015   17.0   4.0   226   343    13   127     9   132 0.84 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P77726|YAJR_ECOLI -            454   4.5e-05   22.0  36.9   2   3   4.6e-06    0.0098   14.3  22.8   126   381   119   361   116   369 0.82 MFS/sugar transport protein
MtrF                 PF09472.5     64 sp|P77726|YAJR_ECOLI -            454     0.042   13.0   1.5   1   1   9.4e-05       0.2   10.9   0.1    38    61   135   158   128   160 0.91 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF)
MORN                 PF02493.15    23 sp|P77726|YAJR_ECOLI -            454      0.14   11.9   0.5   1   1   0.00015      0.31   10.8   0.5     3    16   358   371   358   373 0.94 MORN repeat
MFS_1_like           PF12832.2     77 sp|P77726|YAJR_ECOLI -            454       1.4    8.8   7.2   1   3   0.00031      0.65    9.8   0.1    25    76    37    89    30    90 0.84 MFS_1 like family
YbaB_DNA_bd          PF02575.11    93 sp|P0A8B5|YBAB_ECOLI -            109   3.7e-38  129.3   7.0   1   1   1.7e-41   4.2e-38  129.1   7.0     1    93    11   102    11   102 0.99 YbaB/EbfC DNA-binding family
DUF2968              PF11180.3    192 sp|P0A8B5|YBAB_ECOLI -            109     0.013   14.9   2.1   1   2   8.3e-05      0.21   10.9   0.3   158   186     9    37     4    42 0.87 Protein of unknown function (DUF2968)
Histidinol_dh        PF00815.15   413 sp|P0A8B5|YBAB_ECOLI -            109     0.015   13.9   0.1   1   1     7e-06     0.017   13.7   0.1     6    98    11   104     8   108 0.86 Histidinol dehydrogenase
IIGP                 PF05049.8    376 sp|P0A8B5|YBAB_ECOLI -            109     0.034   12.9   0.2   1   1     2e-05     0.049   12.4   0.2    15    48     8    41     6    49 0.93 Interferon-inducible GTPase (IIGP)
DUF3138              PF11336.3    514 sp|P0A8B5|YBAB_ECOLI -            109      0.12   10.5   0.3   1   1     5e-05      0.12   10.4   0.3    29    95     9    76     5   103 0.81 Protein of unknown function (DUF3138)
Na_H_Exchanger       PF00999.16   380 sp|P39830|YBAL_ECOLI -            558   6.3e-79  265.2  55.8   1   1   1.7e-82   8.6e-79  264.7  55.8     2   379    12   384    11   387 0.94 Sodium/hydrogen exchanger family
TrkA_N               PF02254.13   116 sp|P39830|YBAL_ECOLI -            558   8.5e-25   87.0   0.3   1   1     3e-28   1.5e-24   86.2   0.3     2   115   421   534   420   535 0.97 TrkA-N domain
ApbA                 PF02558.11   151 sp|P39830|YBAL_ECOLI -            558      0.01   15.2   0.0   1   1   4.6e-06     0.023   14.1   0.0     3    74   422   488   420   513 0.80 Ketopantoate reductase PanE/ApbA
tRNA_edit            PF04073.10   123 sp|P0AAR3|YBAK_ECOLI -            159   1.3e-24   86.3   0.2   1   1     2e-28   1.5e-24   86.1   0.2     8   122    31   146    22   147 0.93 Aminoacyl-tRNA editing domain
ArsC                 PF03960.10   110 sp|P0AAR3|YBAK_ECOLI -            159      0.12   12.4   0.0   1   1   2.7e-05       0.2   11.7   0.0    12    52     4    44     1    64 0.89 ArsC family
HTH_3                PF01381.17    55 sp|P0A9T6|YBAQ_ECOLI -            113     1e-10   41.2   0.0   1   2   2.2e-13   4.1e-10   39.3   0.0     1    54    16    69    16    70 0.96 Helix-turn-helix
HTH_19               PF12844.2     64 sp|P0A9T6|YBAQ_ECOLI -            113   2.8e-08   33.6   0.1   1   2   7.9e-11   1.5e-07   31.3   0.0     9    61    21    73    15    76 0.90 Helix-turn-helix domain
HTH_17               PF12728.2     51 sp|P0A9T6|YBAQ_ECOLI -            113    0.0023   18.1   0.1   1   1   3.8e-06     0.007   16.5   0.0     2    25    25    48    25    59 0.90 Helix-turn-helix domain
HTH_26               PF13443.1     63 sp|P0A9T6|YBAQ_ECOLI -            113    0.0043   17.2   0.1   1   1   8.5e-06     0.016   15.4   0.0    11    55    25    68    15    74 0.92 Cro/C1-type HTH DNA-binding domain
HTH_31               PF13560.1     64 sp|P0A9T6|YBAQ_ECOLI -            113    0.0097   16.0   0.1   1   1   1.6e-05      0.03   14.5   0.0    15    59    25    68    16    80 0.90 Helix-turn-helix domain
HTH_30               PF13556.1     59 sp|P0A9T6|YBAQ_ECOLI -            113     0.011   15.3   1.4   1   1   9.7e-06     0.018   14.6   0.4    13    33    25    45    16    79 0.84 PucR C-terminal helix-turn-helix domain
Sigma54_DBD          PF04552.8    160 sp|P0A9T6|YBAQ_ECOLI -            113     0.014   14.9   0.2   1   1   1.3e-05     0.025   14.1   0.0    47    92    20    67    13    78 0.83 Sigma-54, DNA binding domain
UPF0122              PF04297.9    101 sp|P0A9T6|YBAQ_ECOLI -            113     0.057   13.4   0.1   1   1   4.3e-05      0.08   12.9   0.1    32    76    23    65    14    92 0.77 Putative helix-turn-helix protein, YlxM / p13 like
AA_permease_2        PF13520.1    426 sp|P77400|YBAT_ECOLI -            430   8.8e-32  110.1  53.8   1   1   3.9e-35   1.9e-31  109.0  53.9     1   406    13   398    13   424 0.84 Amino acid permease
AA_permease          PF00324.16   478 sp|P77400|YBAT_ECOLI -            430   5.5e-26   90.9  50.0   1   1   1.8e-29   8.8e-26   90.2  50.0     2   416    18   397    17   428 0.84 Amino acid permease
Trp_Tyr_perm         PF03222.8    394 sp|P77400|YBAT_ECOLI -            430       1.9    7.2  40.3   1   1   8.3e-07    0.0041   15.9  23.4     5   244    15   253    11   258 0.86 Tryptophan/tyrosine permease family
ABC_tran             PF00005.22   137 sp|P0A9T8|YBBA_ECOLI -            228     7e-32  110.5   0.0   1   1   1.1e-34   9.4e-32  110.1   0.0     2   136    27   174    26   175 0.92 ABC transporter
AAA_21               PF13304.1    303 sp|P0A9T8|YBBA_ECOLI -            228   2.8e-10   40.6   0.1   1   2   5.5e-06    0.0046   16.9   0.2     3    30    40    65    38    79 0.82 AAA domain
AAA_21               PF13304.1    303 sp|P0A9T8|YBBA_ECOLI -            228   2.8e-10   40.6   0.1   2   2   2.1e-07   0.00017   21.6   0.0   234   299   144   207   122   211 0.91 AAA domain
SMC_N                PF02463.14   220 sp|P0A9T8|YBBA_ECOLI -            228   3.7e-05   23.0   0.1   1   1   1.4e-06    0.0012   18.1   0.1    27   213    39   221    28   227 0.68 RecF/RecN/SMC N terminal domain
AAA_10               PF12846.2    304 sp|P0A9T8|YBBA_ECOLI -            228   4.3e-05   23.1   0.2   1   2   8.7e-05     0.072   12.5   0.3     4    22    39    57    36   148 0.87 AAA-like domain
AAA_10               PF12846.2    304 sp|P0A9T8|YBBA_ECOLI -            228   4.3e-05   23.1   0.2   2   2    0.0011       0.9    8.9   0.0   217   263   161   207   147   211 0.86 AAA-like domain
AAA_29               PF13555.1     62 sp|P0A9T8|YBBA_ECOLI -            228     6e-05   22.5   0.3   1   1   1.4e-07   0.00012   21.5   0.3    20    43    34    55    25    59 0.81 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|P0A9T8|YBBA_ECOLI -            228   0.00015   21.0   0.4   1   1   2.9e-07   0.00024   20.3   0.4    34    67    34    68     7    75 0.86 Protein of unknown function, DUF258
AAA_22               PF13401.1    131 sp|P0A9T8|YBBA_ECOLI -            228    0.0017   18.4   0.8   1   1   2.6e-05     0.022   14.9   0.8     5    37    37    99    33   213 0.55 AAA domain
AAA_25               PF13481.1    194 sp|P0A9T8|YBBA_ECOLI -            228    0.0018   17.7   0.1   1   1   6.5e-06    0.0054   16.1   0.0    29    55    32    58     9    87 0.88 AAA domain
AAA_16               PF13191.1    185 sp|P0A9T8|YBBA_ECOLI -            228    0.0019   18.1   5.4   1   1   1.9e-05     0.015   15.2   5.4    23   163    35   211    16   226 0.46 AAA ATPase domain
NACHT                PF05729.7    166 sp|P0A9T8|YBBA_ECOLI -            228     0.011   15.3   0.1   1   1   2.6e-05     0.022   14.4   0.1     2    21    38    57    37    63 0.90 NACHT domain
AAA_18               PF13238.1    129 sp|P0A9T8|YBBA_ECOLI -            228     0.016   15.5   0.0   1   1   5.1e-05     0.042   14.1   0.0     1    21    39    59    39   104 0.83 AAA domain
AAA_17               PF13207.1    121 sp|P0A9T8|YBBA_ECOLI -            228     0.024   15.4   0.2   1   1   3.7e-05     0.031   15.1   0.2     2    21    39    58    38   192 0.86 AAA domain
SbcCD_C              PF13558.1     90 sp|P0A9T8|YBBA_ECOLI -            228      0.03   14.2   0.1   1   1    0.0002      0.16   11.8   0.1    31    88   145   189   132   191 0.85 Putative exonuclease SbcCD, C subunit
AAA_15               PF13175.1    415 sp|P0A9T8|YBBA_ECOLI -            228     0.032   13.2   0.0   1   2   0.00051      0.42    9.5   0.0    26    43    40    60    12    99 0.78 AAA ATPase domain
MMR_HSR1             PF01926.18   116 sp|P0A9T8|YBBA_ECOLI -            228     0.046   13.6   0.1   1   1   8.7e-05     0.072   13.0   0.1     2    21    39    58    38   134 0.84 50S ribosome-binding GTPase
MobB                 PF03205.9    140 sp|P0A9T8|YBBA_ECOLI -            228     0.077   12.7   0.0   1   1   0.00016      0.13   11.9   0.0     3    21    39    57    37    61 0.90 Molybdopterin guanine dinucleotide synthesis protein B
Miro                 PF08477.8    119 sp|P0A9T8|YBBA_ECOLI -            228     0.091   13.2   0.0   1   1   0.00018      0.15   12.5   0.0     2    24    39    61    38    94 0.87 Miro-like protein
AAA_30               PF13604.1    196 sp|P0A9T8|YBBA_ECOLI -            228      0.11   12.0   0.5   1   2   0.00084      0.69    9.4   0.1    11    40    30    58    27    84 0.79 AAA domain
adh_short            PF00106.20   167 sp|P0AFP4|YBBO_ECOLI -            269     6e-26   91.3   0.0   1   1   3.8e-29   8.1e-26   90.9   0.0     1   166    16   177    16   178 0.90 short chain dehydrogenase
KR                   PF08659.5    181 sp|P0AFP4|YBBO_ECOLI -            269   4.6e-12   45.9   0.0   1   1   3.7e-15   7.8e-12   45.2   0.0     3   165    18   175    17   194 0.80 KR domain
adh_short_C2         PF13561.1    241 sp|P0AFP4|YBBO_ECOLI -            269     1e-11   45.1   0.0   1   1   6.2e-15   1.3e-11   44.7   0.0     6   191    25   202    22   211 0.87 Enoyl-(Acyl carrier protein) reductase
NAD_binding_10       PF13460.1    183 sp|P0AFP4|YBBO_ECOLI -            269   1.4e-09   38.2   0.0   1   1   9.6e-13     2e-09   37.6   0.0     1   146    18   192    18   214 0.81 NADH(P)-binding
DUF1776              PF08643.5    299 sp|P0AFP4|YBBO_ECOLI -            269   0.00046   19.4   0.0   2   2   1.3e-06    0.0027   16.9   0.0   104   212    97   202    92   215 0.88 Fungal family of unknown function (DUF1776)
Eno-Rase_NADH_b      PF12242.3     78 sp|P0AFP4|YBBO_ECOLI -            269     0.001   18.7   0.0   1   1   1.1e-06    0.0024   17.6   0.0    39    60    15    36     2    44 0.78 NAD(P)H binding domain of trans-2-enoyl-CoA reductase
Epimerase            PF01370.16   236 sp|P0AFP4|YBBO_ECOLI -            269      0.11   11.8   0.0   1   1   0.00012      0.26   10.6   0.0     1   117    18   147    18   186 0.80 NAD dependent epimerase/dehydratase family
FtsX                 PF02687.16   121 sp|P77504|YBBP_ECOLI -            804   3.1e-21   75.3  18.3   2   4   7.5e-15   5.6e-11   42.2   9.1     3   121   247   364   245   364 0.83 FtsX-like permease family
FtsX                 PF02687.16   121 sp|P77504|YBBP_ECOLI -            804   3.1e-21   75.3  18.3   4   4   1.9e-16   1.4e-12   47.4   1.7     2   116   683   793   682   797 0.86 FtsX-like permease family
MacB_PCD             PF12704.2    232 sp|P77504|YBBP_ECOLI -            804     2e-07   30.8   0.0   1   2   9.8e-07    0.0073   15.9   0.0    14   201    17   183    12   209 0.72 MacB-like periplasmic core domain
MacB_PCD             PF12704.2    232 sp|P77504|YBBP_ECOLI -            804     2e-07   30.8   0.0   2   2   2.7e-05       0.2   11.2   0.0   123   171   559   600   500   609 0.83 MacB-like periplasmic core domain
Xan_ur_permease      PF00860.15   389 sp|P77328|YBBY_ECOLI -            433   3.1e-98  328.8  32.9   1   1  2.5e-102   3.7e-98  328.5  32.9     2   387     9   394     8   396 0.97 Permease family
PBP                  PF01161.15   146 sp|P77368|YBCL_ECOLI -            183   1.7e-35  122.0   0.1   1   1   2.6e-39   1.9e-35  121.8   0.1     3   144    34   180    32   182 0.91 Phosphatidylethanolamine-binding protein
Defensin_propep      PF00879.13    52 sp|P77368|YBCL_ECOLI -            183    0.0069   16.3   0.1   1   1   1.4e-06     0.011   15.7   0.1     1    36     1    36     1    40 0.94 Defensin propeptide
MS_channel           PF00924.13   206 sp|P0AAT4|YBDG_ECOLI -            415   5.3e-74  248.0   0.3   1   1   2.1e-75     1e-71  240.5   0.3     1   205   142   396   142   397 0.99 Mechanosensitive ion channel
BatA                 PF07584.6     77 sp|P0AAT4|YBDG_ECOLI -            415     0.011   15.9   0.9   1   2   2.2e-06     0.011   15.9   0.9    11    53    29    71    21    83 0.86 Aerotolerance regulator N-terminal
Fe-ADH               PF00465.14   366 sp|P45579|YBDH_ECOLI -            362   4.7e-46  157.1   0.2   1   1   1.9e-49   6.9e-46  156.5   0.2     1   364    12   348    12   350 0.90 Iron-containing alcohol dehydrogenase
Fe-ADH_2             PF13685.1    250 sp|P45579|YBDH_ECOLI -            362   9.6e-23   80.7   0.0   1   1   3.5e-26   1.3e-22   80.3   0.0     4   250    19   279    17   279 0.85 Iron-containing alcohol dehydrogenase
DHQ_synthase         PF01761.15   261 sp|P45579|YBDH_ECOLI -            362    0.0004   19.3   4.0   1   3   1.2e-05     0.043   12.7   0.1    20    64    76   118    70   125 0.82 3-dehydroquinate synthase
GlutR_N              PF05201.10   152 sp|P45579|YBDH_ECOLI -            362      0.11   12.1   0.1   1   1   5.1e-05      0.19   11.3   0.1    71   122   250   304   211   314 0.85 Glutamyl-tRNAGlu reductase, N-terminal domain
MbtH                 PF03621.8     54 sp|P18393|YBDZ_ECOLI -             72   4.2e-21   74.0   0.6   1   1   3.5e-25   5.2e-21   73.7   0.6     1    53     1    54     1    55 0.96 MbtH-like protein
ADH_N                PF08240.7    109 sp|P77316|YBDR_ECOLI -            412   4.3e-30  103.6   0.1   1   1   3.3e-33   9.9e-30  102.5   0.1     2   106    26   151    25   154 0.94 Alcohol dehydrogenase GroES-like domain
ADH_N_assoc          PF13823.1     23 sp|P77316|YBDR_ECOLI -            412   3.5e-12   45.7   0.2   1   1   2.2e-15   6.7e-12   44.8   0.2     1    23     1    23     1    23 0.95 Alcohol dehydrogenase GroES-associated
ADH_zinc_N           PF00107.21   130 sp|P77316|YBDR_ECOLI -            412   8.5e-12   44.7   0.2   1   2   2.1e-12   6.2e-09   35.4   0.0     1    69   197   268   197   286 0.90 Zinc-binding dehydrogenase
ADH_zinc_N_2         PF13602.1    127 sp|P77316|YBDR_ECOLI -            412   8.2e-06   26.7   0.0   1   1   1.1e-08   3.2e-05   24.8   0.0    14   118   248   376   231   380 0.58 Zinc-binding dehydrogenase
Methyltransf_18      PF12847.2    112 sp|P77316|YBDR_ECOLI -            412    0.0041   17.6   0.0   1   1   3.3e-06    0.0097   16.4   0.0    12   108   198   305   186   309 0.73 Methyltransferase domain
Aminotran_1_2        PF00155.16   363 sp|P77806|YBDL_ECOLI -            386   2.3e-58  197.8   0.0   1   1   7.2e-62   2.7e-58  197.6   0.0     3   363    32   383    30   383 0.95 Aminotransferase class I and II
Cys_Met_Meta_PP      PF01053.15   386 sp|P77806|YBDL_ECOLI -            386   5.8e-08   31.4   0.0   1   1   2.7e-11   9.9e-08   30.6   0.0    75   180    96   205    53   212 0.86 Cys/Met metabolism PLP-dependent enzyme
DegT_DnrJ_EryC1      PF01041.12   363 sp|P77806|YBDL_ECOLI -            386   3.9e-06   26.1   0.1   1   1   2.4e-09     9e-06   24.9   0.1    46   146    97   202    85   204 0.88 DegT/DnrJ/EryC1/StrS aminotransferase family
Aminotran_5          PF00266.14   371 sp|P77806|YBDL_ECOLI -            386   2.6e-05   23.1   0.0   1   1     1e-08   3.8e-05   22.5   0.0    41   165    69   189    47   236 0.78 Aminotransferase class-V
DUF493               PF04359.9     85 sp|P0A8J4|YBED_ECOLI -             87   2.7e-31  107.7   0.0   1   1     2e-35     3e-31  107.6   0.0     2    85     6    87     5    87 0.98 Protein of unknown function (DUF493)
CN_hydrolase         PF00795.17   186 sp|P39874|YBEM_ECOLI -            262   5.5e-21   74.7   0.1   1   1   5.1e-25   7.6e-21   74.3   0.1     5   186     6   172     2   172 0.85 Carbon-nitrogen hydrolase
UPF0054              PF02130.12   145 sp|P0A898|YBEY_ECOLI -            155   1.7e-43  147.3   0.0   1   1   1.3e-47     2e-43  147.1   0.0    13   144    22   144     9   145 0.88 Uncharacterized protein family UPF0054
Abhydrolase_6        PF12697.2    228 sp|P75736|YBFF_ECOLI -            254   2.5e-34  119.1   5.0   1   1     2e-37   2.9e-34  118.9   5.0     1   227    19   246    19   247 0.80 Alpha/beta hydrolase family
Abhydrolase_1        PF00561.15   230 sp|P75736|YBFF_ECOLI -            254   1.6e-18   67.0   0.9   1   2   8.3e-14   1.2e-10   41.3   0.4     3    80    45   124    43   184 0.79 alpha/beta hydrolase fold
Abhydrolase_1        PF00561.15   230 sp|P75736|YBFF_ECOLI -            254   1.6e-18   67.0   0.9   2   2   1.1e-08   1.6e-05   24.6   0.0   173   228   193   248   178   250 0.93 alpha/beta hydrolase fold
Abhydrolase_5        PF12695.2    145 sp|P75736|YBFF_ECOLI -            254   2.9e-16   59.5   0.1   1   1   4.2e-19   6.2e-16   58.4   0.1     1   144    18   234    18   235 0.86 Alpha/beta hydrolase family
PGAP1                PF07819.8    225 sp|P75736|YBFF_ECOLI -            254   1.4e-09   37.8   0.2   1   1   2.3e-11   3.4e-08   33.3   0.1     3   144    15   138    13   159 0.80 PGAP1-like protein
DUF676               PF05057.9    219 sp|P75736|YBFF_ECOLI -            254   0.00013   21.3   0.0   1   1   1.3e-07   0.00019   20.7   0.0     8   103    19   105    12   121 0.84 Putative serine esterase (DUF676)
DUF915               PF06028.6    255 sp|P75736|YBFF_ECOLI -            254   0.00023   20.3   0.0   2   2   3.1e-05     0.047   12.7   0.0    99   140    78   113    42   156 0.71 Alpha/beta hydrolase of unknown function (DUF915)
Thioesterase         PF00975.15   229 sp|P75736|YBFF_ECOLI -            254    0.0017   18.6   0.0   1   1   1.3e-06    0.0019   18.4   0.0     2   101    18   113    17   251 0.80 Thioesterase domain
Hydrolase_4          PF12146.3     79 sp|P75736|YBFF_ECOLI -            254     0.005   16.6   0.0   1   1   7.9e-06     0.012   15.4   0.0     6    74     5    71     1    79 0.73 Putative lysophospholipase
Abhydrolase_4        PF08386.5    103 sp|P75736|YBFF_ECOLI -            254      0.02   14.7   0.0   2   2   0.00013      0.19   11.6   0.0    34    92   195   253   179   254 0.91 TAP-like protein
DDE_Tnp_1_assoc      PF13808.1     90 sp|P28916|YBFD_ECOLI -            253   1.4e-31  107.9   0.0   1   1   3.2e-35   2.4e-31  107.2   0.0     1    89     6    94     6    95 0.99 DDE_Tnp_1-associated
DDE_Tnp_1            PF01609.16   213 sp|P28916|YBFD_ECOLI -            253   1.3e-16   60.7   0.2   1   1   2.8e-20   2.1e-16   60.1   0.2     3   154   102   235   100   248 0.86 Transposase DDE domain
RHS                  PF03527.9     41 sp|P77779|YBFO_ECOLI -            477   2.2e-20   72.1   0.6   1   1   1.1e-23   5.5e-20   70.8   0.6     1    41   221   261   221   261 0.98 RHS protein
RHS_repeat           PF05593.9     38 sp|P77779|YBFO_ECOLI -            477   6.1e-11   42.2  18.6   1   5   6.7e-13   3.3e-09   36.6   4.5     1    37    17    62    17    63 0.92 RHS Repeat
Pilus_CpaD           PF09476.5    203 sp|P77779|YBFO_ECOLI -            477      0.12   11.8   0.0   1   1   3.9e-05      0.19   11.1   0.0    30   116   120   211   111   223 0.81 Pilus biogenesis CpaD protein (pilus_cpaD)
DDE_Tnp_1_assoc      PF13808.1     90 sp|P75741|YBFL_ECOLI -            378     3e-31  106.9   0.0   1   1   8.4e-35   6.2e-31  105.9   0.0     1    90     6    95     6    95 0.99 DDE_Tnp_1-associated
DDE_Tnp_1            PF01609.16   213 sp|P75741|YBFL_ECOLI -            378   4.2e-31  108.1   0.3   1   1   8.9e-35   6.6e-31  107.5   0.3     3   213   102   343   100   343 0.93 Transposase DDE domain
4HBT                 PF03061.17    79 sp|P0A8Z3|YBGC_ECOLI -            134   8.7e-19   67.4   0.4   1   1   2.4e-22   1.2e-18   66.9   0.4     1    77    20   103    20   105 0.98 Thioesterase superfamily
4HBT_2               PF13279.1    121 sp|P0A8Z3|YBGC_ECOLI -            134   2.7e-12   47.1   0.2   1   1   6.4e-16   3.2e-12   46.9   0.2     3   117    14   128    12   132 0.88 Thioesterase-like superfamily
Acyl-ACP_TE          PF01643.12   261 sp|P0A8Z3|YBGC_ECOLI -            134   3.3e-05   22.9   0.1   1   1   7.2e-09   3.6e-05   22.8   0.1    46   137    43   132     6   134 0.82 Acyl-ACP thioesterase
Fimbrial             PF00419.15   145 sp|P37909|YBGD_ECOLI -            188   8.6e-19   68.1   0.2   1   1   1.4e-22     1e-18   67.9   0.2     1   145    31   188    31   188 0.81 Fimbrial protein
HATPase_c            PF02518.21   111 sp|P37909|YBGD_ECOLI -            188      0.01   15.5   0.2   1   2   3.9e-06     0.029   14.0   0.1    25    82    70   131    10   133 0.82 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
LamB_YcsF            PF03746.11   242 sp|P75746|YBGL_ECOLI -            244  1.8e-102  341.5   1.1   1   1  1.4e-106  2.1e-102  341.3   1.1     1   241     2   237     2   238 0.99 LamB/YcsF family
PapD_N               PF00345.15   122 sp|P75749|YBGP_ECOLI -            242   2.5e-37  127.3   0.7   1   2   6.7e-41   4.9e-37  126.4   0.3     1   121    21   142    21   143 0.90 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_C               PF02753.12    68 sp|P75749|YBGP_ECOLI -            242   4.7e-12   45.5   0.6   2   2   1.3e-15   9.4e-12   44.5   0.2     1    64   163   224   163   228 0.94 Pili assembly chaperone PapD, C-terminal domain
Usher                PF00577.15   552 sp|P75750|YBGQ_ECOLI -            815  1.6e-176  588.3  20.8   1   1  3.9e-180  1.9e-176  588.0  20.8     2   551   180   730   179   731 0.97 Outer membrane usher protein
PapC_N               PF13954.1    146 sp|P75750|YBGQ_ECOLI -            815   6.6e-40  136.0   0.1   1   1     3e-43   1.5e-39  134.9   0.1     1   145    22   164    22   165 0.95 PapC N-terminal domain
PapC_C               PF13953.1     68 sp|P75750|YBGQ_ECOLI -            815   7.3e-13   47.9   0.0   1   1     5e-16   2.5e-12   46.2   0.0     3    62   743   800   741   806 0.91 PapC C-terminal domain
Hydrolase_3          PF08282.7    254 sp|P21829|YBHA_ECOLI -            272   1.9e-63  214.3   0.0   1   1   1.2e-66   2.2e-63  214.2   0.0     1   254     6   267     6   267 0.98 haloacid dehalogenase-like hydrolase
S6PP                 PF05116.8    247 sp|P21829|YBHA_ECOLI -            272   7.8e-15   54.8   0.0   1   2   7.4e-08   0.00014   21.2   0.0     3    76     4    75     2    91 0.85 Sucrose-6F-phosphate phosphohydrolase
S6PP                 PF05116.8    247 sp|P21829|YBHA_ECOLI -            272   7.8e-15   54.8   0.0   2   2   4.4e-11   8.2e-08   31.8   0.0   110   212   146   246   105   260 0.82 Sucrose-6F-phosphate phosphohydrolase
Hydrolase            PF00702.21   215 sp|P21829|YBHA_ECOLI -            272     5e-10   40.1   3.0   1   1   3.6e-12   6.6e-09   36.4   0.4     2   215     4   235     3   235 0.74 haloacid dehalogenase-like hydrolase
HAD                  PF12710.2    192 sp|P21829|YBHA_ECOLI -            272   3.9e-07   30.4   0.0   2   2     8e-09   1.5e-05   25.2   0.0    88   192    23   232    16   232 0.89 haloacid dehalogenase-like hydrolase
Hydrolase_6          PF13344.1    101 sp|P21829|YBHA_ECOLI -            272   0.00033   20.5   0.0   1   1     4e-07   0.00074   19.3   0.0     1    41     6    47     6   103 0.73 Haloacid dehalogenase-like hydrolase
Ret_tiss             PF10044.4     95 sp|P21829|YBHA_ECOLI -            272      0.11   13.0   0.0   1   1   0.00011      0.21   12.1   0.0    14    63   131   179   123   190 0.87 Retinal tissue protein
Pectinesterase       PF01095.14   298 sp|P46130|YBHC_ECOLI -            427   9.8e-15   53.8   6.2   1   3   1.1e-06     0.017   13.7   0.1    10    60    92   143    81   154 0.82 Pectinesterase
Pectinesterase       PF01095.14   298 sp|P46130|YBHC_ECOLI -            427   9.8e-15   53.8   6.2   2   3   1.9e-15   2.9e-11   42.5   0.6    76   183   195   318   184   346 0.80 Pectinesterase
PBP                  PF01161.15   146 sp|P12994|YBHB_ECOLI -            158   1.9e-37  128.3   0.0   1   1   1.5e-41   2.2e-37  128.1   0.0     2   144    12   157    11   158 0.95 Phosphatidylethanolamine-binding protein
ABC_tran             PF00005.22   137 sp|P0A9U1|YBHF_ECOLI -            578   1.3e-56  190.6   0.0   1   2   1.7e-27   6.2e-25   88.0   0.0     4   135    26   165    23   167 0.94 ABC transporter
ABC_tran             PF00005.22   137 sp|P0A9U1|YBHF_ECOLI -            578   1.3e-56  190.6   0.0   2   2   2.4e-31     9e-29  100.5   0.0     2   137   346   489   345   489 0.97 ABC transporter
AAA_21               PF13304.1    303 sp|P0A9U1|YBHF_ECOLI -            578   1.5e-24   87.5   0.1   1   2     2e-10   7.5e-08   32.6   0.0     1   286    35   185    35   193 0.81 AAA domain
AAA_21               PF13304.1    303 sp|P0A9U1|YBHF_ECOLI -            578   1.5e-24   87.5   0.1   2   2   9.3e-12   3.4e-09   37.0   0.3     3   297   359   518   357   518 0.71 AAA domain
AAA_29               PF13555.1     62 sp|P0A9U1|YBHF_ECOLI -            578   3.5e-08   32.8   1.1   1   2   0.00021     0.078   12.5   0.2    22    51    32    61    25    66 0.82 P-loop containing region of AAA domain
AAA_29               PF13555.1     62 sp|P0A9U1|YBHF_ECOLI -            578   3.5e-08   32.8   1.1   2   2   2.7e-06   0.00099   18.5   0.1    17    51   350   383   341   387 0.83 P-loop containing region of AAA domain
AAA_23               PF13476.1    202 sp|P0A9U1|YBHF_ECOLI -            578     4e-08   33.8   0.9   1   2    0.0022      0.81    9.9   0.1    21    42    35    56    26    74 0.87 AAA domain
AAA_23               PF13476.1    202 sp|P0A9U1|YBHF_ECOLI -            578     4e-08   33.8   0.9   2   2   3.6e-07   0.00013   22.3   0.1     6    43   338   379   336   405 0.85 AAA domain
AAA_10               PF12846.2    304 sp|P0A9U1|YBHF_ECOLI -            578   0.00013   21.5   1.5   2   2   0.00016     0.059   12.7   0.1     6    47   360   402   356   421 0.80 AAA-like domain
AAA_33               PF13671.1    143 sp|P0A9U1|YBHF_ECOLI -            578   0.00037   20.4   0.9   1   2   0.00037      0.14   12.0   0.1     4    23    38    57    35    88 0.83 AAA domain
MobB                 PF03205.9    140 sp|P0A9U1|YBHF_ECOLI -            578   0.00042   20.0   0.3   1   2   0.00021     0.078   12.6   0.1     4    25    37    58    34    67 0.84 Molybdopterin guanine dinucleotide synthesis protein B
AAA_22               PF13401.1    131 sp|P0A9U1|YBHF_ECOLI -            578   0.00046   20.3   0.2   1   2   0.00048      0.18   11.9   0.0     6    28    35    57    30   125 0.87 AAA domain
AAA                  PF00004.24   132 sp|P0A9U1|YBHF_ECOLI -            578   0.00068   19.8   2.0   1   2   0.00089      0.33   11.1   0.1     3    23    38    58    36   167 0.87 ATPase family associated with various cellular activities (AAA)
SRP54                PF00448.17   196 sp|P0A9U1|YBHF_ECOLI -            578   0.00076   18.9   0.8   1   2   0.00047      0.18   11.2   0.1     4    38    36    70    33    79 0.86 SRP54-type protein, GTPase domain
AAA_30               PF13604.1    196 sp|P0A9U1|YBHF_ECOLI -            578    0.0012   18.4   0.3   1   2   0.00044      0.16   11.5   0.0    19    52    34    69    26    77 0.81 AAA domain
AAA_25               PF13481.1    194 sp|P0A9U1|YBHF_ECOLI -            578    0.0019   17.6   0.4   1   2    0.0011      0.39   10.0   0.1    30    54    30    54    13    67 0.86 AAA domain
UPF0079              PF02367.12   123 sp|P0A9U1|YBHF_ECOLI -            578    0.0021   17.7   0.8   1   2    0.0009      0.33   10.5   0.1    12    39    30    57    24    66 0.85 Uncharacterised P-loop hydrolase UPF0079
Zeta_toxin           PF06414.7    201 sp|P0A9U1|YBHF_ECOLI -            578    0.0029   16.7   0.3   1   2   0.00045      0.17   10.9   0.1    21    54    38    73    35    85 0.92 Zeta toxin
AAA_16               PF13191.1    185 sp|P0A9U1|YBHF_ECOLI -            578    0.0035   17.3   0.1   1   2    0.0011      0.41   10.6   0.0    29    63    38    74    33   139 0.71 AAA ATPase domain
AAA_17               PF13207.1    121 sp|P0A9U1|YBHF_ECOLI -            578    0.0046   17.7   0.2   1   2   0.00095      0.35   11.6   0.0     3    23    37    57    35   119 0.77 AAA domain
Rad17                PF03215.10   519 sp|P0A9U1|YBHF_ECOLI -            578    0.0055   15.4   0.1   2   2   0.00019     0.071   11.7   0.0    46   100   354   412   336   468 0.77 Rad17 cell cycle checkpoint protein
ArgK                 PF03308.11   267 sp|P0A9U1|YBHF_ECOLI -            578    0.0071   15.1   1.6   1   2    0.0025      0.93    8.2   0.2    30    68    34    72    25    83 0.89 ArgK protein
Thymidylate_kin      PF02223.12   186 sp|P0A9U1|YBHF_ECOLI -            578     0.027   13.8   0.1   1   2    0.0011      0.41    9.9   0.0     3    24    40    61    38    74 0.83 Thymidylate kinase
KAP_NTPase           PF07693.9    325 sp|P0A9U1|YBHF_ECOLI -            578     0.049   12.6   0.0   1   1    0.0003      0.11   11.4   0.0    15    69    28    81    22    96 0.89 KAP family P-loop domain
cobW                 PF02492.14   178 sp|P0A9U1|YBHF_ECOLI -            578     0.059   12.8   1.5   1   1   0.00052      0.19   11.1   0.1     2    22    35    55    34    78 0.78 CobW/HypB/UreG, nucleotide-binding domain
NACHT                PF05729.7    166 sp|P0A9U1|YBHF_ECOLI -            578     0.065   12.8   3.5   1   2   0.00061      0.23   11.1   0.1     5    25    38    58    34    65 0.87 NACHT domain
HlyD                 PF00529.15   305 sp|P75777|YBHG_ECOLI -            332     2e-26   93.0  14.4   1   1   2.1e-29   2.8e-26   92.5  14.4     2   262    45   293    44   329 0.80 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P75777|YBHG_ECOLI -            332   9.6e-15   54.8   0.1   2   2     3e-15     4e-12   46.3   0.0     1   101   206   314   206   318 0.80 HlyD family secretion protein
HlyD_2               PF12700.2    328 sp|P75777|YBHG_ECOLI -            332   2.3e-14   53.3   0.3   1   1   2.4e-16   3.2e-13   49.5   0.3    10   265    33   323    27   328 0.77 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P75777|YBHG_ECOLI -            332   9.3e-12   44.4   0.0   1   3   6.9e-15   9.3e-12   44.4   0.0     1    49    43    91    43    92 0.96 Biotin-lipoyl like
OEP                  PF02321.13   188 sp|P75777|YBHG_ECOLI -            332   0.00022   20.8  28.1   1   2   0.00029      0.39   10.2  14.2   117   177   110   170    80   171 0.88 Outer membrane efflux protein
OEP                  PF02321.13   188 sp|P75777|YBHG_ECOLI -            332   0.00022   20.8  28.1   2   2   2.6e-05     0.036   13.6   8.7   142   179   169   205   165   207 0.91 Outer membrane efflux protein
Biotin_lipoyl        PF00364.17    74 sp|P75777|YBHG_ECOLI -            332     0.012   15.2   0.1   1   2   5.4e-05     0.072   12.7   0.0    49    73    50    74    44    94 0.81 Biotin-requiring enzyme
Terminase_1          PF03354.10   477 sp|P75777|YBHG_ECOLI -            332     0.017   13.5   1.2   1   1   1.7e-05     0.022   13.1   1.2    29    91    82   144    75   205 0.78 Phage Terminase
Toxin_52             PF15605.1    104 sp|P75777|YBHG_ECOLI -            332     0.034   14.0   2.1   1   2   6.5e-05     0.088   12.7   0.3    45    96   122   170   112   177 0.82 Putative toxin 52
WEMBL                PF05701.6    522 sp|P75777|YBHG_ECOLI -            332      0.15   10.4  12.2   2   2     3e-05      0.04   12.3   6.6    76   131   146   201   143   206 0.92 Weak chloroplast movement under blue light
V-SNARE              PF05008.10    79 sp|P75777|YBHG_ECOLI -            332      0.17   12.0   6.1   1   1   6.7e-05      0.09   12.9   2.7     5    50   159   204   145   217 0.80 Vesicle transport v-SNARE protein N-terminus
DUF3584              PF12128.3   1201 sp|P75777|YBHG_ECOLI -            332      0.49    7.6  11.1   1   1   0.00047      0.63    7.3  11.1   436   534   106   202    84   217 0.78 Protein of unknown function (DUF3584)
PrpF                 PF04303.8    371 sp|P0AAV8|YBHH_ECOLI -            350  7.5e-162  538.2   1.9   1   1  1.1e-165  8.4e-162  538.1   1.9     1   371     1   350     1   350 0.99 PrpF protein
Pro_racemase         PF05544.6    325 sp|P0AAV8|YBHH_ECOLI -            350   5.1e-06   25.5   0.6   1   2   6.7e-08    0.0005   19.0   0.0    55   130    59   142    53   158 0.76 Proline racemase
Aconitase            PF00330.15   465 sp|P75764|YBHJ_ECOLI -            753   1.8e-47  161.8   0.1   1   1   3.6e-51   2.6e-47  161.3   0.1    91   450   113   456    38   471 0.87 Aconitase family (aconitate hydratase)
Aconitase_C          PF00694.14   131 sp|P75764|YBHJ_ECOLI -            753   7.2e-06   26.1   0.0   1   1     2e-09   1.5e-05   25.1   0.0    84   129   637   683   624   685 0.89 Aconitase C-terminal domain
Bax1-I               PF01027.15   205 sp|P0AAC4|YBHL_ECOLI -            234   2.2e-59  200.5  36.8   1   1   3.4e-63   2.5e-59  200.3  36.8     2   205    19   230    18   230 0.92 Inhibitor of apoptosis-promoting Bax1
2TM                  PF13239.1     83 sp|P0AAC4|YBHL_ECOLI -            234      0.23   11.5   0.1   3   4   3.1e-05      0.23   11.5   0.1    11    54   136   181   131   206 0.71 2TM domain
ABC2_membrane_3      PF12698.2    344 sp|P0AFP9|YBHR_ECOLI -            368   2.3e-53  181.4  14.5   1   1   1.1e-56   2.8e-53  181.1  14.5     7   337    25   354    21   361 0.91 ABC-2 family transporter protein
ABC2_membrane        PF01061.19   210 sp|P0AFP9|YBHR_ECOLI -            368   4.9e-36  123.8  16.4   2   2   3.7e-39   9.1e-36  122.9  11.2    52   208   164   331   119   333 0.87 ABC-2 type transporter
ABC2_membrane_2      PF12679.2    277 sp|P0AFP9|YBHR_ECOLI -            368   2.4e-30  105.3   9.0   1   1   1.3e-33   3.1e-30  104.9   9.0     1   275     6   366     6   368 0.87 ABC-2 family transporter protein
ABC2_membrane_4      PF12730.2    232 sp|P0AFP9|YBHR_ECOLI -            368   1.1e-19   70.5   7.7   1   1   5.6e-23   1.4e-19   70.2   7.7     2   224    11   352    10   358 0.79 ABC-2 family transporter protein
CcmB                 PF03379.8    215 sp|P0AFP9|YBHR_ECOLI -            368    0.0084   15.3  11.0   2   2   1.5e-05     0.038   13.2   5.3    69   166   197   295   175   322 0.82 CcmB protein
ABC2_membrane_3      PF12698.2    344 sp|P0AFQ2|YBHS_ECOLI -            377   3.8e-44  151.1  22.3   1   1   1.2e-47   4.3e-44  150.9  22.3     2   344    27   370    26   370 0.88 ABC-2 family transporter protein
ABC2_membrane_2      PF12679.2    277 sp|P0AFQ2|YBHS_ECOLI -            377   1.6e-39  135.4  14.8   1   1   5.9e-43   2.2e-39  134.9  14.8     2   270    13   370    12   375 0.87 ABC-2 family transporter protein
ABC2_membrane        PF01061.19   210 sp|P0AFQ2|YBHS_ECOLI -            377   8.6e-24   83.8  35.5   1   3   2.4e-05     0.088   11.9   0.0     3    41    11    48     9    76 0.89 ABC-2 type transporter
ABC2_membrane        PF01061.19   210 sp|P0AFQ2|YBHS_ECOLI -            377   8.6e-24   83.8  35.5   2   3   5.4e-26     2e-22   79.4  23.0    47   209   179   341   146   342 0.91 ABC-2 type transporter
ABC2_membrane_4      PF12730.2    232 sp|P0AFQ2|YBHS_ECOLI -            377   3.6e-16   59.0  17.3   1   1   1.4e-19   5.3e-16   58.4  17.3     3   229    18   363    17   369 0.74 ABC-2 family transporter protein
Na_sulph_symp        PF00939.14   471 sp|P75763|YBHI_ECOLI -            477  2.3e-177  590.5  46.1   1   1  1.8e-181  2.7e-177  590.3  46.1     2   471     4   474     3   474 0.99 Sodium:sulfate symporter transmembrane region
DUF1768              PF08719.6    157 sp|P30176|YBIA_ECOLI -            160   2.4e-45  154.0   0.2   1   1   3.8e-49   2.8e-45  153.8   0.2     1   155    17   156    17   158 0.97 Domain of unknown function (DUF1768)
Phage_30_3           PF08010.6    146 sp|P30176|YBIA_ECOLI -            160     0.047   13.1   0.0   1   1     1e-05     0.076   12.5   0.0    14    63    29    79    21   127 0.86 Bacteriophage protein GP30.3
Glycos_trans_3N      PF02885.12    66 sp|P30177|YBIB_ECOLI -            320     3e-15   55.5   0.0   1   1   7.3e-19   5.4e-15   54.7   0.0     2    65     3    70     2    71 0.97 Glycosyl transferase family, helical bundle domain
Glycos_transf_3      PF00591.16   253 sp|P30177|YBIB_ECOLI -            320   0.00064   19.1   0.0   1   1   1.7e-07    0.0013   18.2   0.0    17   245    94   318    89   320 0.81 Glycosyl transferase family, a/b domain
Ldh_2                PF02615.9    335 sp|P30178|YBIC_ECOLI -            361  9.9e-139  461.7   0.0   1   1  7.6e-143  1.1e-138  461.5   0.0     1   334     5   340     5   341 0.99 Malate/L-lactate dehydrogenase
MS_channel           PF00924.13   206 sp|P75783|YBIO_ECOLI -            741   2.9e-44  150.8   1.8   1   1   3.9e-48   5.8e-44  149.8   1.8     2   205   515   714   514   715 0.98 Mechanosensitive ion channel
CitMHS               PF03600.11   351 sp|P75788|YBIR_ECOLI -            372   5.2e-28   97.6  22.1   1   2     7e-32   5.2e-28   97.6  22.1    43   323    32   306    12   334 0.89 Citrate transporter
Na_sulph_symp        PF00939.14   471 sp|P75788|YBIR_ECOLI -            372   1.4e-07   30.8   6.0   1   2   1.8e-11   1.4e-07   30.8   6.0   320   448    41   165    35   183 0.80 Sodium:sulfate symporter transmembrane region
DUF1471              PF07338.8     56 sp|P0AAX3|YBIJ_ECOLI -             86   1.8e-18   65.9   2.7   1   1     2e-22     3e-18   65.2   2.7     1    56    33    86    33    86 0.99 Protein of unknown function (DUF1471)
YkuD                 PF03734.9    144 sp|P0AAX8|YBIS_ECOLI -            306   1.4e-17   64.2   0.0   1   1   1.7e-21   2.6e-17   63.4   0.0     4   142   101   231    98   235 0.80 L,D-transpeptidase catalytic domain
ABC_tran             PF00005.22   137 sp|P0A9U3|YBIT_ECOLI -            530   1.3e-46  158.3   0.0   1   2   4.2e-22   1.7e-19   70.4   0.0     2   137    18   184    17   184 0.84 ABC transporter
ABC_tran             PF00005.22   137 sp|P0A9U3|YBIT_ECOLI -            530   1.3e-46  158.3   0.0   2   2   1.1e-26   4.5e-24   85.2   0.0     2   137   336   467   335   467 0.91 ABC transporter
ABC_tran_2           PF12848.2     85 sp|P0A9U3|YBIT_ECOLI -            530   3.6e-23   81.2   3.0   1   2     8e-23   3.2e-20   71.7   2.0     2    85   224   309   223   309 0.92 ABC transporter
AAA_21               PF13304.1    303 sp|P0A9U3|YBIT_ECOLI -            530   1.4e-16   61.3   7.4   1   4   5.9e-07   0.00024   21.1   0.0     3    21    31    49    30   112 0.76 AAA domain
AAA_21               PF13304.1    303 sp|P0A9U3|YBIT_ECOLI -            530   1.4e-16   61.3   7.4   2   4     4e-06    0.0016   18.4   0.3   246   303   165   216   159   216 0.87 AAA domain
AAA_21               PF13304.1    303 sp|P0A9U3|YBIT_ECOLI -            530   1.4e-16   61.3   7.4   3   4    0.0012      0.48   10.3   0.3     3    19   349   365   348   404 0.82 AAA domain
AAA_21               PF13304.1    303 sp|P0A9U3|YBIT_ECOLI -            530   1.4e-16   61.3   7.4   4   4   0.00021     0.086   12.7   0.1   226   302   428   498   377   499 0.69 AAA domain
AAA_29               PF13555.1     62 sp|P0A9U3|YBIT_ECOLI -            530   4.6e-07   29.2   1.9   1   2   3.7e-05     0.015   14.8   0.3    18    40    23    44    16    46 0.77 P-loop containing region of AAA domain
AAA_29               PF13555.1     62 sp|P0A9U3|YBIT_ECOLI -            530   4.6e-07   29.2   1.9   2   2    0.0001     0.041   13.4   0.1    23    43   345   365   334   382 0.80 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|P0A9U3|YBIT_ECOLI -            530   1.4e-06   27.6   0.1   1   2     0.002      0.79    8.8   0.0    29    69    20    61     4   101 0.79 Protein of unknown function, DUF258
DUF258               PF03193.11   161 sp|P0A9U3|YBIT_ECOLI -            530   1.4e-06   27.6   0.1   2   2   9.9e-06     0.004   16.3   0.0    25    67   334   377   312   390 0.78 Protein of unknown function, DUF258
AAA_17               PF13207.1    121 sp|P0A9U3|YBIT_ECOLI -            530   9.6e-06   26.4   0.1   1   2    0.0004      0.16   12.7   0.0     2    23    30    51    29   128 0.73 AAA domain
AAA_18               PF13238.1    129 sp|P0A9U3|YBIT_ECOLI -            530   1.1e-05   25.7   0.3   2   2   5.4e-05     0.022   15.0   0.0     3    57   350   415   349   497 0.77 AAA domain
AAA_14               PF13173.1    128 sp|P0A9U3|YBIT_ECOLI -            530   1.6e-05   24.7   0.0   3   3   0.00066      0.26   11.1   0.0     5    43   348   395   345   422 0.73 AAA domain
SMC_N                PF02463.14   220 sp|P0A9U3|YBIT_ECOLI -            530   1.9e-05   23.9  15.6   4   4   0.00034      0.14   11.4   0.0   128   212   428   509   370   514 0.78 RecF/RecN/SMC N terminal domain
Miro                 PF08477.8    119 sp|P0A9U3|YBIT_ECOLI -            530   3.3e-05   24.3   0.0   2   2   4.3e-05     0.017   15.6   0.0     1    26   347   375   347   418 0.76 Miro-like protein
RNA_helicase         PF00910.17   107 sp|P0A9U3|YBIT_ECOLI -            530   3.9e-05   23.7   0.0   2   2   0.00054      0.22   11.7   0.0     3    62   350   409   348   425 0.65 RNA helicase
AAA_10               PF12846.2    304 sp|P0A9U3|YBIT_ECOLI -            530   0.00011   21.7   0.7   2   2   0.00033      0.13   11.6   0.0     5    24   349   368   347   404 0.89 AAA-like domain
DUF87                PF01935.12   229 sp|P0A9U3|YBIT_ECOLI -            530   0.00014   21.7   4.8   2   3   0.00027      0.11   12.3   0.1    23    47   345   369   337   376 0.85 Domain of unknown function DUF87
AAA_22               PF13401.1    131 sp|P0A9U3|YBIT_ECOLI -            530   0.00019   21.5   4.1   3   3     0.001       0.4   10.8   0.5     7    37   348   396   345   501 0.51 AAA domain
ArgK                 PF03308.11   267 sp|P0A9U3|YBIT_ECOLI -            530   0.00032   19.5   2.2   1   2   0.00013      0.05   12.3   0.0    14    53    12    51     2    65 0.86 ArgK protein
AAA_16               PF13191.1    185 sp|P0A9U3|YBIT_ECOLI -            530   0.00057   19.9   0.0   2   2   0.00014     0.054   13.4   0.0    27    63   348   389   337   478 0.75 AAA ATPase domain
FtsK_SpoIIIE         PF01580.13   205 sp|P0A9U3|YBIT_ECOLI -            530   0.00065   19.2   1.7   2   2   0.00039      0.16   11.4   0.0    38    61   345   368   325   373 0.84 FtsK/SpoIIIE family
MMR_HSR1             PF01926.18   116 sp|P0A9U3|YBIT_ECOLI -            530   0.00076   19.4   0.0   2   2   0.00045      0.18   11.7   0.0     2    21   348   367   347   418 0.81 50S ribosome-binding GTPase
NACHT                PF05729.7    166 sp|P0A9U3|YBIT_ECOLI -            530    0.0016   18.1   3.3   2   2   0.00031      0.12   11.9   0.4     3    25   348   370   346   440 0.91 NACHT domain
AAA_25               PF13481.1    194 sp|P0A9U3|YBIT_ECOLI -            530    0.0021   17.4   0.7   2   2    0.0011      0.44    9.9   0.0    29    83   341   393   321   443 0.76 AAA domain
AAA_28               PF13521.1    163 sp|P0A9U3|YBIT_ECOLI -            530    0.0025   17.7   0.0   2   2    0.0015      0.62   10.0   0.0     2    20   348   366   347   419 0.74 AAA domain
AAA_24               PF13479.1    213 sp|P0A9U3|YBIT_ECOLI -            530    0.0055   16.3   1.2   3   3   0.00056      0.22   11.0   0.0     5    24   347   367   344   404 0.83 AAA domain
Arch_ATPase          PF01637.13   234 sp|P0A9U3|YBIT_ECOLI -            530     0.018   14.7   1.2   1   1   0.00033      0.13   11.9   0.0    23    71   348   410   335   485 0.66 Archaeal ATPase
DUF2070              PF09843.4    179 sp|P0A9U3|YBIT_ECOLI -            530     0.064   12.7   0.0   1   1   0.00032      0.13   11.7   0.0    83   131   184   233   179   276 0.78 Predicted membrane protein (DUF2070)
AAA_23               PF13476.1    202 sp|P0A9U3|YBIT_ECOLI -            530      0.14   12.4  11.0   1   2   0.00095      0.38   11.0   0.0    11    37    18    45     8   125 0.88 AAA domain
PAP2                 PF01569.16   129 sp|P75806|YBJG_ECOLI -            198   2.1e-19   69.4   9.6   2   2   4.3e-23   2.1e-19   69.4   9.6     3   118    58   162    56   172 0.89 PAP2 superfamily
Phage_holin_3        PF05106.7    100 sp|P75806|YBJG_ECOLI -            198       1.2    9.1   7.0   2   2   1.8e-05      0.09   12.7   1.7    12    64   117   167   108   183 0.80 Phage holin family (Lysis protein S)
VIT1                 PF01988.14   213 sp|P75806|YBJG_ECOLI -            198       6.3    6.2   8.1   1   2   2.7e-05      0.13   11.7   1.0   126   183    16    76     4    94 0.83 VIT family
Hydrolase_3          PF08282.7    254 sp|P75809|YBJI_ECOLI -            271     4e-55  187.1   0.1   1   1   1.5e-58   4.5e-55  186.9   0.1     1   254     6   259     6   259 0.97 haloacid dehalogenase-like hydrolase
S6PP                 PF05116.8    247 sp|P75809|YBJI_ECOLI -            271     1e-12   47.9   0.0   1   2   2.7e-05     0.081   12.2   0.0     3    47     4    49     2    59 0.89 Sucrose-6F-phosphate phosphohydrolase
S6PP                 PF05116.8    247 sp|P75809|YBJI_ECOLI -            271     1e-12   47.9   0.0   2   2   9.2e-12   2.7e-08   33.4   0.0   130   224   155   250   145   255 0.86 Sucrose-6F-phosphate phosphohydrolase
Hydrolase            PF00702.21   215 sp|P75809|YBJI_ECOLI -            271   1.3e-08   35.5   0.4   1   1   4.6e-11   1.4e-07   32.1   0.1     1   215     3   227     3   227 0.50 haloacid dehalogenase-like hydrolase
HAD                  PF12710.2    192 sp|P75809|YBJI_ECOLI -            271   2.5e-07   31.0   0.0   1   1   6.9e-10   2.1e-06   28.0   0.0    96   192    28   224    20   224 0.82 haloacid dehalogenase-like hydrolase
Asp-Al_Ex            PF06826.7    169 sp|P60869|YBJL_ECOLI -            561   3.6e-83  277.1  49.2   1   2   1.6e-44   7.9e-41  139.3  15.1     2   168    17   182    16   183 0.98 Predicted Permease Membrane Region
Asp-Al_Ex            PF06826.7    169 sp|P60869|YBJL_ECOLI -            561   3.6e-83  277.1  49.2   2   2   5.9e-46   2.9e-42  144.0  26.1     1   169   385   555   385   555 0.99 Predicted Permease Membrane Region
TrkA_C               PF02080.16    71 sp|P60869|YBJL_ECOLI -            561     2e-24   84.9   0.4   1   2     2e-15   9.7e-12   44.3   0.0    12    68   228   284   218   287 0.93 TrkA-C domain
TrkA_C               PF02080.16    71 sp|P60869|YBJL_ECOLI -            561     2e-24   84.9   0.4   2   2   1.2e-13   6.1e-10   38.5   0.3     2    71   304   372   303   372 0.91 TrkA-C domain
YbjQ_1               PF01906.12   105 sp|P0A8C1|YBJQ_ECOLI -            107   8.6e-41  138.6   0.6   1   1   6.3e-45   9.4e-41  138.5   0.6     1   104     1   104     1   105 0.99 Putative heavy-metal-binding
Epimerase            PF01370.16   236 sp|P75821|YBJS_ECOLI -            337   1.9e-27   96.2   0.0   1   2   4.2e-30     7e-27   94.3   0.0     1   235     3   234     3   235 0.91 NAD dependent epimerase/dehydratase family
3Beta_HSD            PF01073.14   280 sp|P75821|YBJS_ECOLI -            337   2.2e-18   65.9   0.0   1   1   1.7e-21   2.7e-18   65.6   0.0     1   271     4   256     4   264 0.89 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10       PF13460.1    183 sp|P75821|YBJS_ECOLI -            337   3.7e-18   66.1   0.0   1   1   3.1e-21   5.1e-18   65.7   0.0     1   151     3   176     3   190 0.84 NADH(P)-binding
RmlD_sub_bind        PF04321.12   287 sp|P75821|YBJS_ECOLI -            337     1e-10   40.9   0.0   1   2   1.6e-13   2.6e-10   39.6   0.0     1   241     1   262     1   276 0.85 RmlD substrate binding domain
NAD_binding_4        PF07993.7    249 sp|P75821|YBJS_ECOLI -            337   2.3e-10   39.8   0.0   1   1   5.3e-13   8.7e-10   37.9   0.0    63   200    46   173     5   215 0.79 Male sterility protein
adh_short            PF00106.20   167 sp|P75821|YBJS_ECOLI -            337   0.00056   19.8   0.1   1   1   7.8e-07    0.0013   18.6   0.1     3    63     3    54     2    77 0.75 short chain dehydrogenase
NmrA                 PF05368.8    233 sp|P75821|YBJS_ECOLI -            337    0.0017   17.6   0.0   1   1   1.5e-06    0.0024   17.1   0.0     1    56     3    56     3   125 0.80 NmrA-like family
Wax2_C               PF12076.3    164 sp|P75821|YBJS_ECOLI -            337     0.045   13.4   0.0   1   1   4.1e-05     0.068   12.8   0.0     1    62     3    66     3    84 0.76 WAX2 C-terminal domain
KR                   PF08659.5    181 sp|P75821|YBJS_ECOLI -            337     0.058   13.0   1.3   1   2   0.00021      0.34   10.5   0.2     3    34     3    33     2    68 0.70 KR domain
MFS_1                PF07690.11   352 sp|P21503|YCAD_ECOLI -            382   1.2e-27   96.5  53.0   1   2   6.5e-18   1.4e-14   53.6  29.2     2   233    12   227    11   228 0.79 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P21503|YCAD_ECOLI -            382   1.2e-27   96.5  53.0   2   2   1.8e-16   3.9e-13   48.8  19.9     6   173   210   370   205   381 0.88 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P21503|YCAD_ECOLI -            382     2e-07   29.9  17.3   1   2   9.6e-11     2e-07   29.9  17.3    44   176    39   167    11   182 0.85 Sugar (and other) transporter
MFS_1_like           PF12832.2     77 sp|P21503|YCAD_ECOLI -            382    0.0068   16.1   0.1   2   3   3.2e-06    0.0068   16.1   0.1    16    67   216   267   212   278 0.90 MFS_1 like family
Nterm_IS4            PF13006.2     98 sp|P21503|YCAD_ECOLI -            382     0.045   13.7   0.0   1   1     5e-05      0.11   12.5   0.0    17    69   114   170   106   208 0.72 Insertion element 4 transposase N-terminal
MFS_3                PF05977.8    524 sp|P21503|YCAD_ECOLI -            382      0.99    7.4  31.3   1   2   3.7e-05     0.079   11.0  16.2   224   407    11   192     1   215 0.82 Transmembrane secretion effector
MFS_2                PF13347.1    428 sp|P21503|YCAD_ECOLI -            382       4.4    5.5  41.1   1   3   0.00042      0.88    7.8  19.1   226   378     7   150     2   155 0.85 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P21503|YCAD_ECOLI -            382       4.4    5.5  41.1   2   3   0.00012      0.26    9.6   4.6   215   332   190   305   156   313 0.76 MFS/sugar transport protein
DUF1228              PF06779.9     85 sp|P21503|YCAD_ECOLI -            382       9.2    6.3  18.3   1   4   2.2e-05     0.047   13.7   2.5    13    82    27    96    10    99 0.80 Protein of unknown function (DUF1228)
Peptidase_M48        PF01435.13   226 sp|P43674|YCAL_ECOLI -            254   2.4e-25   89.4   0.0   1   1   1.1e-28   3.1e-25   89.0   0.0    28   226    72   245    40   245 0.78 Peptidase family M48
DUF2201_N            PF13203.1    292 sp|P43674|YCAL_ECOLI -            254     0.033   13.3   0.5   2   2   2.4e-05     0.072   12.2   0.1    50    76   118   144    99   153 0.83 Putative metallopeptidase domain
MLTD_N               PF06474.7     34 sp|P43674|YCAL_ECOLI -            254     0.067   13.3   0.4   1   1     9e-05      0.27   11.4   0.4    19    33     7    21     4    22 0.91 MltD lipid attachment motif
Peptidase_MA_2       PF13485.1    128 sp|P43674|YCAL_ECOLI -            254     0.088   12.8   0.0   1   1   4.7e-05      0.14   12.1   0.0    19    44   122   147   101   234 0.68 Peptidase MA superfamily
AA_permease_2        PF13520.1    426 sp|P75835|YCAM_ECOLI -            476   1.5e-42  145.6  47.0   1   1   2.5e-46   1.9e-42  145.3  47.0     2   422    11   451    10   462 0.85 Amino acid permease
AA_permease          PF00324.16   478 sp|P75835|YCAM_ECOLI -            476   1.6e-14   53.1  40.4   1   1   2.9e-18   2.1e-14   52.7  40.4    19   445    26   449    12   472 0.74 Amino acid permease
Flavodoxin_2         PF02525.12   199 sp|P43340|YCAK_ECOLI -            196   2.1e-39  135.0   0.0   1   1   4.9e-43   2.4e-39  134.8   0.0     2   191     5   181     4   189 0.87 Flavodoxin-like fold
FMN_red              PF03358.10   152 sp|P43340|YCAK_ECOLI -            196   7.9e-13   48.1   0.0   1   1   2.2e-16   1.1e-12   47.7   0.0     2   117     5   132     5   157 0.86 NADPH-dependent FMN reductase
Flavodoxin_4         PF12682.2    156 sp|P43340|YCAK_ECOLI -            196   4.3e-06   26.1   0.1   1   1   1.3e-09   6.2e-06   25.6   0.1    54    99    61   105    15   111 0.82 Flavodoxin
DUF421               PF04239.7     99 sp|P75839|YCAP_ECOLI -            230   1.6e-24   85.3   0.0   1   1   5.6e-28   2.1e-24   84.9   0.0     1    71   102   171   102   213 0.86 Protein of unknown function (DUF421)
DUF3973              PF13119.1     41 sp|P75839|YCAP_ECOLI -            230      0.14   12.1   0.8   1   1   7.3e-05      0.27   11.1   0.8     2    15   193   206   192   212 0.81 Domain of unknown function (DUF3973)
Herpes_LMP2          PF07415.6    489 sp|P75839|YCAP_ECOLI -            230      0.14   10.7   2.4   1   1     5e-05      0.19   10.3   2.4   202   286    11    95     2   100 0.73 Gammaherpesvirus latent membrane protein (LMP2) protein
Trm112p              PF03966.11    68 sp|P0AAZ7|YCAR_ECOLI -             60   6.1e-09   36.1   0.4   1   1   2.9e-12   1.4e-08   34.9   0.4     1    68     2    41     2    41 0.97 Trm112p-like protein
DUF2318              PF10080.4    102 sp|P0AAZ7|YCAR_ECOLI -             60     0.026   14.2   0.0   1   1   6.3e-06     0.031   14.0   0.0    37    63    10    37     4    42 0.81 Predicted membrane protein (DUF2318)
A2L_zn_ribbon        PF08792.5     33 sp|P0AAZ7|YCAR_ECOLI -             60     0.037   13.4   0.7   1   1   9.7e-06     0.048   13.1   0.7     4    25     9    30     6    33 0.92 A2L zinc ribbon domain
YkuD                 PF03734.9    144 sp|P22525|YCBB_ECOLI -            615   5.5e-30  104.5   0.1   1   1   1.8e-33   8.7e-30  103.8   0.1     4   138   377   543   374   572 0.94 L,D-transpeptidase catalytic domain
PG_binding_1         PF01471.13    57 sp|P22525|YCBB_ECOLI -            615   7.8e-10   38.5   0.2   3   3   1.4e-10   6.9e-07   29.1   0.0    25    57   316   348   306   348 0.92 Putative peptidoglycan binding domain
PG_binding_3         PF09374.5     72 sp|P22525|YCBB_ECOLI -            615      0.13   12.2   1.1   1   1   4.4e-05      0.22   11.5   0.1     2    30   324   348   323   369 0.78 Predicted Peptidoglycan domain
PapD_N               PF00345.15   122 sp|P40876|YCBF_ECOLI -            236   4.1e-27   94.3   0.0   1   2   3.4e-30   2.5e-26   91.8   0.0     1   121    27   149    27   150 0.89 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_C               PF02753.12    68 sp|P40876|YCBF_ECOLI -            236   1.2e-16   60.2   0.0   1   1   3.3e-20   2.5e-16   59.2   0.0     2    65   170   229   169   232 0.95 Pili assembly chaperone PapD, C-terminal domain
Lactamase_B          PF00753.22   194 sp|P75849|YCBL_ECOLI -            215   3.7e-33  114.8   0.6   1   1   1.1e-36   4.1e-33  114.6   0.6     4   194    11   192     8   192 0.94 Metallo-beta-lactamase superfamily
Lactamase_B_2        PF12706.2    194 sp|P75849|YCBL_ECOLI -            215     1e-07   31.7   0.1   1   1   3.4e-11   1.3e-07   31.4   0.1     3   153    27   189    25   194 0.59 Beta-lactamase superfamily domain
Lactamase_B_5        PF14597.1    199 sp|P75849|YCBL_ECOLI -            215     0.007   15.7   0.0   1   1   1.7e-05     0.064   12.6   0.0    89   138   101   153    16   163 0.82 Metallo-beta-lactamase superfamily
Lactamase_B_3        PF13483.1    163 sp|P75849|YCBL_ECOLI -            215     0.055   13.1   0.0   1   1     2e-05     0.074   12.7   0.0     2    57     8    70     7   154 0.66 Beta-lactamase superfamily domain
Bax1-I               PF01027.15   205 sp|P0AAC6|YCCA_ECOLI -            219   1.6e-39  135.6  32.4   1   1   3.7e-43   1.8e-39  135.4  32.4     2   205    19   213    18   213 0.86 Inhibitor of apoptosis-promoting Bax1
DUF2583              PF10762.4     89 sp|P0AAC6|YCCA_ECOLI -            219      0.14   12.2   1.4   1   1     8e-05      0.39   10.8   1.4     3    67   128   188   126   195 0.80 Protein of unknown function (DUF2583)
FUSC-like            PF12805.2    284 sp|P75870|YCCS_ECOLI -            717  3.2e-111  370.8   6.6   1   3  1.1e-114  3.2e-111  370.8   6.6     1   284    66   345    66   345 0.98 FUSC-like inner membrane protein yccS
FUSC_2               PF13515.1    128 sp|P75870|YCCS_ECOLI -            717   5.2e-27   94.3  13.1   2   2   1.7e-30   5.2e-27   94.3  13.1     3   127   403   525   401   526 0.93 Fusaric acid resistance protein-like
FUSC                 PF04632.7    650 sp|P75870|YCCS_ECOLI -            717   9.7e-09   34.2  33.6   1   2   1.3e-08     4e-05   22.2  18.3    67   454    81   502    67   504 0.74 Fusaric acid resistance protein family
FUSC                 PF04632.7    650 sp|P75870|YCCS_ECOLI -            717   9.7e-09   34.2  33.6   2   2   2.3e-07   0.00068   18.2   3.9   125   300   506   688   503   714 0.68 Fusaric acid resistance protein family
ALMT                 PF11744.3    406 sp|P75870|YCCS_ECOLI -            717    0.0006   18.5   1.5   1   2   6.9e-07    0.0021   16.8   0.9    39   217   414   582   388   599 0.75 Aluminium activated malate transporter
BofA                 PF07441.6     78 sp|P75870|YCCS_ECOLI -            717     0.019   14.9   3.2   1   1   6.5e-06     0.019   14.9   3.2     4    50   465   511   462   523 0.91 SigmaK-factor processing regulatory protein BofA
DUF2057              PF09829.4    189 sp|P0A8X4|YCCT_ECOLI -            220   8.7e-48  162.4   0.0   1   1   6.7e-52   9.9e-48  162.3   0.0     2   189    22   213    21   213 0.98 Uncharacterized protein conserved in bacteria (DUF2057)
PHP                  PF02811.14   175 sp|P75914|YCDX_ECOLI -            245   1.3e-17   64.1   1.1   1   1   3.6e-21   2.7e-17   63.1   1.2     1   169     4   164     4   175 0.91 PHP domain
RNase_P_p30          PF01876.11   150 sp|P75914|YCDX_ECOLI -            245    0.0002   20.6   0.0   1   1   4.3e-08   0.00032   19.9   0.0    32   104   111   178   109   202 0.77 RNase P subunit p30
Nitrate_red_del      PF02613.10   136 sp|P75915|YCDY_ECOLI -            184   9.2e-20   70.8   0.2   1   1   1.8e-23   1.3e-19   70.3   0.2     3   135    31   150    29   151 0.90 Nitrate reductase delta subunit
MKT1_N               PF12247.3     90 sp|P75915|YCDY_ECOLI -            184     0.052   13.8   0.0   1   2   2.9e-05      0.21   11.9   0.0    15    52    13    48     6    66 0.84 Temperature dependent protein affecting M2 dsRNA replication
Rhodanese            PF00581.15   113 sp|P24188|YCEA_ECOLI -            350   6.1e-17   61.9   0.1   2   2   1.1e-20   1.6e-16   60.6   0.0     2   112   138   233   137   234 0.94 Rhodanese-like domain
Maf                  PF02545.9    195 sp|P0A729|YCEF_ECOLI -            194   1.4e-64  216.8   0.0   1   1   1.1e-68   1.6e-64  216.6   0.0     2   189     3   188     2   192 0.98 Maf-like protein
YceG                 PF02618.11   297 sp|P28306|YCEG_ECOLI -            340   2.9e-95  318.7   0.0   1   1   2.3e-99   3.3e-95  318.5   0.0     3   297    42   330    40   330 0.94 YceG-like family
DUF480               PF04337.7    148 sp|P29217|YCEH_ECOLI -            215   9.3e-65  216.9   0.5   1   1   3.2e-68   1.6e-64  216.2   0.5     1   148     5   158     5   158 0.99 Protein of unknown function, DUF480
SMC_Nse1             PF07574.8    200 sp|P29217|YCEH_ECOLI -            215     0.041   13.5   0.0   1   2   0.00018      0.91    9.1   0.0   161   188    47    73    29    76 0.87 Nse1 non-SMC component of SMC5-6 complex
YceI                 PF04264.8    164 sp|P0A8X2|YCEI_ECOLI -            191   5.7e-40  136.9   0.8   1   1   4.4e-44   6.5e-40  136.7   0.8     2   163    25   187    24   188 0.93 YceI-like domain
GFO_IDH_MocA         PF01408.17   120 sp|P75931|YCEM_ECOLI -            307   1.4e-25   90.1   0.0   1   1     3e-29   2.2e-25   89.4   0.0     1   120     4   121     4   121 0.98 Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C       PF02894.12   115 sp|P75931|YCEM_ECOLI -            307   2.9e-07   30.2   0.1   1   1   9.2e-11   6.8e-07   29.0   0.1    19   114   141   226   132   227 0.92 Oxidoreductase family, C-terminal alpha/beta domain
TatD_DNase           PF01026.16   255 sp|P0AFQ7|YCFH_ECOLI -            265   1.1e-76  257.4   0.0   1   1   2.4e-80   1.2e-76  257.3   0.0     1   255     4   255     4   255 0.96 TatD related DNase
Amidohydro_2         PF04909.9    273 sp|P0AFQ7|YCFH_ECOLI -            265     0.008   15.7   0.8   2   2   8.4e-06     0.042   13.4   0.0   192   273   172   256   159   256 0.80 Amidohydrolase
UPF0227              PF05728.7    187 sp|P0A8E1|YCFP_ECOLI -            180   5.1e-72  241.5   0.0   1   1   3.9e-76   5.8e-72  241.3   0.0     1   186     1   177     1   178 0.99 Uncharacterised protein family (UPF0227)
YkuD                 PF03734.9    144 sp|P75954|YCFS_ECOLI -            320   6.6e-20   71.8   0.1   1   1   1.6e-23   1.2e-19   70.9   0.1     3   144   103   240   101   240 0.79 L,D-transpeptidase catalytic domain
LysM                 PF01476.15    44 sp|P75954|YCFS_ECOLI -            320   4.2e-07   29.7   0.0   1   1   1.1e-10   8.1e-07   28.8   0.0     2    44    47    91    46    91 0.94 LysM domain
Acyl_transf_3        PF01757.17   340 sp|P75955|YCFT_ECOLI -            357   8.9e-32  110.2  41.7   1   1   7.2e-36   1.1e-31  109.9  41.7     3   337     7   326     5   329 0.90 Acyltransferase family
FAA_hydrolase        PF01557.13   218 sp|P76004|YCGM_ECOLI -            219   6.7e-57  192.4   0.0   1   1   5.8e-61   8.6e-57  192.0   0.0     1   209    18   211    18   218 0.94 Fumarylacetoacetate (FAA) hydrolase family
CxxCxxCC             PF03692.10    85 sp|P0A8L5|YCGN_ECOLI -            153   1.4e-08   35.0  10.3   1   1   1.7e-12   2.6e-08   34.2  10.3     2    85    29    97    28    97 0.97 Putative zinc- or iron-chelating domain
YcgR                 PF07317.7    108 sp|P76010|YCGR_ECOLI -            244   1.9e-38  130.5   0.0   1   1   3.7e-42   2.8e-38  130.0   0.0     1   108     7   111     7   111 0.99 Flagellar regulator YcgR
PilZ                 PF07238.9    102 sp|P76010|YCGR_ECOLI -            244     2e-17   63.0   0.0   2   2     1e-20   7.7e-17   61.1   0.0     1   102   112   230   112   230 0.94 PilZ domain
MarC                 PF01914.12   203 sp|P25743|YCHE_ECOLI -            215   1.6e-74  249.3  11.2   1   1   3.8e-78   1.9e-74  249.2  11.2     2   203     9   210     8   210 0.99 MarC family integral membrane protein
TerC                 PF03741.11   184 sp|P25743|YCHE_ECOLI -            215    0.0027   17.1   0.3   1   2   5.5e-07    0.0027   17.1   0.3    17    95    31   112    28   139 0.72 Integral membrane protein TerC family
SPW                  PF03779.9     51 sp|P25743|YCHE_ECOLI -            215       1.2    8.5   8.7   2   2   1.7e-05     0.085   12.2   2.6     3    48   160   204   158   207 0.88 SPW repeat
YchF-GTPase_C        PF06071.8     84 sp|P0ABU2|YCHF_ECOLI -            363   5.1e-41  138.3   0.6   1   1   2.9e-44   8.7e-41  137.6   0.6     1    84   279   362   279   362 0.99 Protein of unknown function (DUF933)
MMR_HSR1             PF01926.18   116 sp|P0ABU2|YCHF_ECOLI -            363   4.4e-18   65.3   0.0   1   1   3.5e-21     1e-17   64.1   0.0     1    92     4   112     4   208 0.81 50S ribosome-binding GTPase
FeoB_N               PF02421.13   156 sp|P0ABU2|YCHF_ECOLI -            363     6e-09   35.3   0.0   1   2   1.2e-11   3.6e-08   32.8   0.0     3    44     5    46     3    55 0.90 Ferrous iron transport protein B
TGS                  PF02824.16    60 sp|P0ABU2|YCHF_ECOLI -            363    0.0046   16.7   0.5   2   2   5.3e-05      0.16   11.8   0.2    13    39   295   321   282   360 0.73 TGS domain
AAA_17               PF13207.1    121 sp|P0ABU2|YCHF_ECOLI -            363      0.08   13.7   0.1   1   1   0.00011      0.32   11.8   0.0     3    25     6    27     4    75 0.76 AAA domain
SEC-C                PF02810.10    21 sp|P37052|YCHJ_ECOLI -            152   1.3e-18   66.0  20.2   1   2   7.7e-11   5.7e-07   28.9   0.7     1    20     1    20     1    21 0.94 SEC-C motif
SEC-C                PF02810.10    21 sp|P37052|YCHJ_ECOLI -            152   1.3e-18   66.0  20.2   2   2   7.9e-15   5.8e-11   41.6  12.8     1    19   134   152   134   152 0.96 SEC-C motif
CW_binding_1         PF01473.15    19 sp|P37052|YCHJ_ECOLI -            152     0.004   17.1   0.4   1   1   1.1e-06    0.0081   16.2   0.4     2    15   114   127   113   128 0.90 Putative cell wall binding repeat
4HBT                 PF03061.17    79 sp|P0A8Z0|YCIA_ECOLI -            132   5.3e-18   64.9   0.3   1   1   9.4e-22     7e-18   64.5   0.3     1    74    26    98    26   102 0.96 Thioesterase superfamily
MaoC_dehydratas      PF01575.14   123 sp|P0A8Z0|YCIA_ECOLI -            132     0.065   12.6   0.2   1   1   1.3e-05     0.093   12.1   0.1    61   113    40    92    21   103 0.77 MaoC like domain
DUF3442              PF11924.3    280 sp|P39165|YCHO_ECOLI -            464   1.9e-89  299.9   9.8   1   1   1.6e-93   2.3e-89  299.6   9.8     1   280    57   341    57   341 0.98 Protein of unknown function (DUF3442)
IspA                 PF04279.10   176 sp|P0A710|YCIB_ECOLI -            179   6.5e-72  241.1  22.8   1   1   1.5e-75   7.3e-72  241.0  22.8     1   175     1   175     1   176 0.99 Intracellular septation protein A
Bax1-I               PF01027.15   205 sp|P0A710|YCIB_ECOLI -            179       1.3    8.5  21.2   1   2   0.00014      0.71    9.4  13.5    85   192     9   123     6   141 0.75 Inhibitor of apoptosis-promoting Bax1
UPF0259              PF06790.6    248 sp|P21365|YCIC_ECOLI -            247    2e-102  341.8  18.6   1   1  3.1e-106  2.3e-102  341.6  18.6     1   247     1   246     1   247 0.99 Uncharacterised protein family (UPF0259)
Dexa_ind             PF15198.1     95 sp|P21365|YCIC_ECOLI -            247     0.059   13.2   1.6   1   2   1.4e-05       0.1   12.5   0.1    32    83    13    66     4    72 0.86 Dexamethasone-induced
KGG                  PF10685.4     23 sp|P21361|YCIG_ECOLI -             59   5.4e-20   70.8  18.4   1   2   2.5e-14   3.7e-10   39.4   6.2     1    23    10    31    10    31 0.98 Stress-induced bacterial acidophilic repeat motif
KGG                  PF10685.4     23 sp|P21361|YCIG_ECOLI -             59   5.4e-20   70.8  18.4   2   2   1.1e-13   1.6e-09   37.4   4.4     1    23    32    53    32    53 0.98 Stress-induced bacterial acidophilic repeat motif
SUI1                 PF01253.17    83 sp|P08245|YCIH_ECOLI -            108   1.5e-22   79.2   1.9   1   1   1.2e-26   1.7e-22   78.9   1.9     2    82    28   104    27   105 0.95 Translation initiation factor SUI1
YCII                 PF03795.9     95 sp|P0AB55|YCII_ECOLI -             98   1.5e-30  105.1   0.0   1   1   3.5e-34   1.7e-30  105.0   0.0     1    95     1    95     1    95 0.99 YCII-related domain
DUF1330              PF07045.6     65 sp|P0AB55|YCII_ECOLI -             98   0.00016   21.4   0.4   1   1   5.3e-08   0.00026   20.7   0.4    39    64    58    83    34    83 0.89 Protein of unknown function (DUF1330)
RPEL                 PF02755.10    26 sp|P0AB55|YCII_ECOLI -             98     0.045   13.0   0.1   1   1   1.4e-05     0.069   12.5   0.1     1    12    12    23    12    23 0.94 RPEL repeat
adh_short            PF00106.20   167 sp|P31808|YCIK_ECOLI -            252   2.2e-37  128.5   0.1   1   1   1.8e-40   2.6e-37  128.2   0.1     2   166    14   183    13   184 0.94 short chain dehydrogenase
KR                   PF08659.5    181 sp|P31808|YCIK_ECOLI -            252   1.9e-16   60.2   0.0   1   1   1.6e-19   2.4e-16   59.9   0.0     3   166    15   182    14   195 0.87 KR domain
adh_short_C2         PF13561.1    241 sp|P31808|YCIK_ECOLI -            252   2.1e-15   57.1   0.0   1   1   1.9e-18   2.8e-15   56.7   0.0     5   186    21   203    19   221 0.89 Enoyl-(Acyl carrier protein) reductase
Epimerase            PF01370.16   236 sp|P31808|YCIK_ECOLI -            252   9.9e-05   21.8   0.0   1   1     2e-07   0.00029   20.3   0.0     1   171    15   195    15   210 0.71 NAD dependent epimerase/dehydratase family
Polysacc_synt_2      PF02719.10   294 sp|P31808|YCIK_ECOLI -            252   0.00011   21.1   0.0   1   1   9.4e-08   0.00014   20.8   0.0     1   156    15   183    15   198 0.68 Polysaccharide biosynthesis protein
NAD_binding_10       PF13460.1    183 sp|P31808|YCIK_ECOLI -            252    0.0019   18.2   0.1   1   2   4.4e-06    0.0065   16.5   0.0     1    38    15    53    15    73 0.91 NADH(P)-binding
Eno-Rase_NADH_b      PF12242.3     78 sp|P31808|YCIK_ECOLI -            252     0.011   15.4   0.0   1   1   1.5e-05     0.023   14.4   0.0    42    72    15    44     3    49 0.83 NAD(P)H binding domain of trans-2-enoyl-CoA reductase
DUF1776              PF08643.5    299 sp|P31808|YCIK_ECOLI -            252     0.042   12.9   0.0   1   1   4.6e-05     0.068   12.2   0.0   105   196   105   192    11   201 0.66 Fungal family of unknown function (DUF1776)
Bac_luciferase       PF00296.15   307 sp|P31808|YCIK_ECOLI -            252     0.065   12.3   0.0   1   1   7.8e-05      0.12   11.5   0.0   175   276    24   124     5   144 0.83 Luciferase-like monooxygenase
3HCDH_N              PF02737.13   180 sp|P31808|YCIK_ECOLI -            252      0.13   11.8   0.0   1   1   0.00018      0.27   10.8   0.0    10    49    24    63    15    94 0.80 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Sua5_yciO_yrdC       PF01300.13   179 sp|P0AFR4|YCIO_ECOLI -            206   1.7e-47  160.9   0.0   1   1   2.7e-51     2e-47  160.7   0.0     2   179    23   198    22   198 0.95 Telomere recombination
FlbD                 PF06289.6     60 sp|P0AFR4|YCIO_ECOLI -            206      0.12   11.7   0.2   2   2   6.1e-05      0.45    9.9   0.2    24    47   179   202   175   204 0.90 Flagellar protein (FlbD)
DUF440               PF04269.7    103 sp|P0A8L7|YCIU_ECOLI -            109   3.1e-46  155.6   1.8   1   1   2.3e-50   3.5e-46  155.4   1.8     2   103     7   109     3   109 0.98 Protein of unknown function, DUF440
DUF697               PF05128.7    162 sp|P0A8R7|YCJF_ECOLI -            353   4.5e-54  182.3   0.2   2   2   9.1e-58   4.5e-54  182.3   0.2     2   161   183   341   182   342 0.98 Domain of unknown function (DUF697)
Glyco_trans_4_4      PF13579.1    160 sp|P0A8R7|YCJF_ECOLI -            353     0.033   14.3   3.5   1   1   1.3e-05     0.062   13.4   3.5    53   140   119   213    86   230 0.67 Glycosyl transferase 4-like domain
EcsC                 PF12787.2    249 sp|P0A8R7|YCJF_ECOLI -            353     0.037   13.4   0.0   1   1   1.3e-05     0.062   12.6   0.0   118   165   223   271   165   304 0.89 EcsC protein family
BPD_transp_1         PF00528.17   185 sp|P77716|YCJP_ECOLI -            280   2.3e-17   63.0  17.9   2   2   1.6e-21   2.3e-17   63.0  17.9     2   178    89   267    88   271 0.81 Binding-protein-dependent transport system inner membrane component
SBP_bac_1            PF01547.20   315 sp|P76042|YCJN_ECOLI -            430   9.6e-39  133.9   3.7   1   1   1.8e-42   1.3e-38  133.5   3.7     7   311    43   325    36   329 0.88 Bacterial extracellular solute-binding protein
SBP_bac_8            PF13416.1    281 sp|P76042|YCJN_ECOLI -            430   5.4e-30  105.0   9.6   1   1     1e-33   7.5e-30  104.6   9.6     1   276    48   355    48   360 0.76 Bacterial extracellular solute-binding protein
BPD_transp_1         PF00528.17   185 sp|P0AFR7|YCJO_ECOLI -            293   8.6e-24   84.0  16.9   2   2   5.8e-28   8.6e-24   84.0  16.9     2   171    88   282    87   285 0.88 Binding-protein-dependent transport system inner membrane component
GFO_IDH_MocA         PF01408.17   120 sp|P77503|YCJS_ECOLI -            351   7.3e-32  110.4   0.1   1   1   6.7e-35   1.6e-31  109.2   0.0     1   118    10   128    10   130 0.97 Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C       PF02894.12   115 sp|P77503|YCJS_ECOLI -            351     2e-12   46.8   0.0   1   1   1.6e-15     4e-12   45.9   0.0     1   112   142   250   142   253 0.94 Oxidoreductase family, C-terminal alpha/beta domain
NAD_binding_3        PF03447.11   117 sp|P77503|YCJS_ECOLI -            351   2.4e-05   24.7   0.1   1   1   3.3e-08   8.1e-05   22.9   0.0    16   112    31   124    16   129 0.80 Homoserine dehydrogenase, NAD binding domain
Semialdhyde_dh       PF01118.19   121 sp|P77503|YCJS_ECOLI -            351    0.0014   18.9   0.0   1   1   9.9e-07    0.0025   18.1   0.0     1    93    11    99    11   101 0.86 Semialdehyde dehydrogenase, NAD binding domain
F420_oxidored        PF03807.12    96 sp|P77503|YCJS_ECOLI -            351     0.025   15.0   0.0   1   1   2.1e-05     0.051   13.9   0.0     1    74    11    76    11    90 0.79 NADP oxidoreductase coenzyme F420-dependent
Saccharop_dh         PF03435.13   386 sp|P77503|YCJS_ECOLI -            351     0.029   13.3   0.1   1   1   1.9e-05     0.046   12.7   0.1     1   112    12   120    12   127 0.74 Saccharopine dehydrogenase
ADH_zinc_N           PF00107.21   130 sp|P76043|YCJQ_ECOLI -            350   6.1e-26   90.5   0.0   1   1   4.8e-29     1e-25   89.7   0.0     1   101   168   269   168   297 0.89 Zinc-binding dehydrogenase
ADH_N                PF08240.7    109 sp|P76043|YCJQ_ECOLI -            350     0.011   15.4   0.1   1   2   5.7e-05      0.12   12.1   0.0    33    61    79   107    57   115 0.88 Alcohol dehydrogenase GroES-like domain
2-Hacid_dh_C         PF02826.14   178 sp|P76043|YCJQ_ECOLI -            350     0.018   14.2   0.0   1   1   1.3e-05     0.028   13.5   0.0    38    77   160   200   124   207 0.83 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AlaDh_PNT_C          PF01262.16   168 sp|P76043|YCJQ_ECOLI -            350     0.035   13.6   0.7   1   1   2.9e-05     0.061   12.8   0.7    23    48   161   186   143   205 0.91 Alanine dehydrogenase/PNT, C-terminal domain
AdoHcyase_NAD        PF00670.16   162 sp|P76043|YCJQ_ECOLI -            350       0.1   12.4   4.6   1   2   0.00016      0.35   10.7   1.3    22    58   157   192   146   198 0.88 S-adenosyl-L-homocysteine hydrolase, NAD binding domain
Methyltransf_18      PF12847.2    112 sp|P76043|YCJQ_ECOLI -            350      0.12   12.9   0.0   1   1   0.00011      0.23   12.0   0.0    12    45   169   202   161   284 0.83 Methyltransferase domain
TrkA_N               PF02254.13   116 sp|P76043|YCJQ_ECOLI -            350      0.14   12.1   0.6   1   1   0.00019      0.39   10.7   0.3     1    43   161   204   161   233 0.89 TrkA-N domain
AP_endonuc_2         PF01261.19   213 sp|P76044|YCJR_ECOLI -            262   1.9e-25   89.4   0.2   1   1   2.9e-29   2.2e-25   89.2   0.2     1   212    19   218    19   243 0.90 Xylose isomerase-like TIM barrel
Nit_Regul_Hom        PF10126.4    110 sp|P76044|YCJR_ECOLI -            262      0.09   12.5   0.0   1   1   2.7e-05       0.2   11.4   0.0    14   107    79   176    69   179 0.87 Uncharacterized protein, homolog of nitrogen regulatory protein PII
Glyco_hydro_65m      PF03632.10   370 sp|P77154|YCJT_ECOLI -            755  4.6e-130  433.6   0.1   1   1  1.2e-133    6e-130  433.2   0.1     2   370   299   677   298   677 0.97 Glycosyl hydrolase family 65 central catalytic domain
Glyco_hydro_65N      PF03636.10   255 sp|P77154|YCJT_ECOLI -            755   1.5e-63  214.5   0.0   1   1   4.4e-67   2.2e-63  213.9   0.0     1   255     6   241     6   241 0.96 Glycosyl hydrolase family 65, N-terminal domain
Glyco_hydro_65C      PF03633.10    54 sp|P77154|YCJT_ECOLI -            755   4.8e-14   52.1   0.0   1   1   2.9e-17   1.5e-13   50.6   0.0     1    52   681   729   681   731 0.97 Glycosyl hydrolase family 65, C-terminal domain
ABC_tran             PF00005.22   137 sp|P77481|YCJV_ECOLI -            360     6e-29  101.0   0.0   1   1   2.1e-31   1.7e-28   99.6   0.0     2   136    21   162    20   163 0.90 ABC transporter
AAA_21               PF13304.1    303 sp|P77481|YCJV_ECOLI -            360   1.7e-09   38.0   0.0   1   2   1.9e-05     0.014   15.3   0.0     1    35    32    64    32    72 0.78 AAA domain
AAA_21               PF13304.1    303 sp|P77481|YCJV_ECOLI -            360   1.7e-09   38.0   0.0   2   2   4.9e-07   0.00039   20.4   0.0   226   298   124   194    93   199 0.83 AAA domain
TOBE                 PF03459.12    64 sp|P77481|YCJV_ECOLI -            360   5.3e-09   36.0   0.0   1   2     0.001      0.79    9.8   0.0     1    63   237   289   237   290 0.86 TOBE domain
TOBE                 PF03459.12    64 sp|P77481|YCJV_ECOLI -            360   5.3e-09   36.0   0.0   2   2   4.6e-08   3.6e-05   23.7   0.0     4    64   295   350   292   350 0.92 TOBE domain
TOBE_2               PF08402.5     75 sp|P77481|YCJV_ECOLI -            360   1.6e-08   34.4   0.0   1   1     4e-11   3.2e-08   33.4   0.0     2    75   282   351   281   351 0.88 TOBE domain
SMC_N                PF02463.14   220 sp|P77481|YCJV_ECOLI -            360   1.2e-05   24.6   0.1   1   1   7.5e-08   5.9e-05   22.4   0.1    22   216    28   210     8   214 0.71 RecF/RecN/SMC N terminal domain
Rad17                PF03215.10   519 sp|P77481|YCJV_ECOLI -            360   0.00014   20.7   0.0   1   1   2.4e-07   0.00019   20.2   0.0    24   112     8    97     2   116 0.69 Rad17 cell cycle checkpoint protein
AAA_15               PF13175.1    415 sp|P77481|YCJV_ECOLI -            360   0.00031   19.9   0.0   2   2   2.6e-05      0.02   13.9   0.0   371   411   154   194   147   196 0.94 AAA ATPase domain
AAA_23               PF13476.1    202 sp|P77481|YCJV_ECOLI -            360    0.0004   20.7   0.0   1   1   9.8e-07   0.00077   19.8   0.0     2    39     4    50     3    53 0.77 AAA domain
DUF258               PF03193.11   161 sp|P77481|YCJV_ECOLI -            360    0.0013   17.9   0.0   1   1   3.5e-06    0.0027   16.9   0.0    25    61    19    56     2    77 0.80 Protein of unknown function, DUF258
AAA_22               PF13401.1    131 sp|P77481|YCJV_ECOLI -            360    0.0016   18.5   0.1   1   1   5.8e-06    0.0045   17.1   0.1     3    27    29    53    25   199 0.81 AAA domain
AAA                  PF00004.24   132 sp|P77481|YCJV_ECOLI -            360    0.0066   16.6   0.1   1   1   3.8e-05      0.03   14.5   0.0     1    52    33    84    33    93 0.70 ATPase family associated with various cellular activities (AAA)
AAA_33               PF13671.1    143 sp|P77481|YCJV_ECOLI -            360    0.0069   16.2   0.0   1   1     2e-05     0.015   15.1   0.0     2    20    33    51    32    97 0.81 AAA domain
AAA_10               PF12846.2    304 sp|P77481|YCJV_ECOLI -            360    0.0081   15.6   0.0   1   1   2.2e-05     0.018   14.5   0.0     4    34    33    63    31    71 0.90 AAA-like domain
AAA_16               PF13191.1    185 sp|P77481|YCJV_ECOLI -            360     0.011   15.7   0.0   1   1   5.5e-05     0.043   13.7   0.0    23    44    29    50    16    67 0.84 AAA ATPase domain
AAA_17               PF13207.1    121 sp|P77481|YCJV_ECOLI -            360     0.013   16.3   0.2   1   1   3.3e-05     0.026   15.3   0.2     2    21    33    52    32   206 0.86 AAA domain
AAA_29               PF13555.1     62 sp|P77481|YCJV_ECOLI -            360      0.02   14.3   0.0   1   1   5.9e-05     0.046   13.2   0.0    17    40    25    47     6    51 0.76 P-loop containing region of AAA domain
RNA_helicase         PF00910.17   107 sp|P77481|YCJV_ECOLI -            360      0.06   13.5   0.3   1   1   0.00042      0.33   11.1   0.0     1    18    33    50    33    98 0.89 RNA helicase
AAA_28               PF13521.1    163 sp|P77481|YCJV_ECOLI -            360     0.091   12.7   0.0   1   1   0.00023      0.18   11.7   0.0     2    20    33    51    32    82 0.91 AAA domain
AAA_18               PF13238.1    129 sp|P77481|YCJV_ECOLI -            360     0.094   13.0   0.0   1   1   0.00024      0.19   12.0   0.0     1    23    33    65    33   123 0.77 AAA domain
Aldo_ket_red         PF00248.16   283 sp|P25906|YDBC_ECOLI -            286     3e-54  183.7   0.0   1   1   2.4e-58   3.5e-54  183.5   0.0     1   281    15   283    15   285 0.96 Aldo/keto reductase family
DDE_Tnp_1_assoc      PF13808.1     90 sp|P28917|YDCC_ECOLI -            378   4.8e-32  109.4   0.0   1   1   1.3e-35   9.8e-32  108.4   0.0     1    90     6    95     6    95 0.98 DDE_Tnp_1-associated
DDE_Tnp_1            PF01609.16   213 sp|P28917|YDCC_ECOLI -            378   9.6e-31  106.9   0.3   1   1   1.9e-34   1.4e-30  106.4   0.3     3   213   102   343   100   343 0.93 Transposase DDE domain
Hexapep              PF00132.19    36 sp|P76100|YDCK_ECOLI -            326     3e-05   23.3  17.7   5   6   2.6e-06     0.013   15.0   0.6     8    36   232   260   226   260 0.89 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P76100|YDCK_ECOLI -            326     3e-05   23.3  17.7   6   6   0.00012      0.59    9.7   0.1     5    35   266   296   262   297 0.91 Bacterial transferase hexapeptide (six repeats)
Bactofilin           PF04519.8    101 sp|P76100|YDCK_ECOLI -            326   0.00039   20.3   8.0   4   4   1.3e-06    0.0063   16.5   1.8    18    79   231   296   226   314 0.85 Polymer-forming cytoskeletal
Pec_lyase_C          PF00544.14   201 sp|P76100|YDCK_ECOLI -            326      0.14   11.6   1.9   1   3   4.5e-05      0.22   10.9   0.1    81   111    90   121    88   125 0.89 Pectate lyase
Peptidase_U32        PF01136.14   233 sp|P76104|YDCP_ECOLI -            653   1.1e-70  237.1   0.1   1   2     3e-71   2.2e-67  226.3   0.0     2   231    79   305    78   307 0.90 Peptidase family U32
Peptidase_U32        PF01136.14   233 sp|P76104|YDCP_ECOLI -            653   1.1e-70  237.1   0.1   2   2    0.0001      0.75    8.6   0.0    39    64   526   551   522   561 0.86 Peptidase family U32
DUF3656              PF12392.3    122 sp|P76104|YDCP_ECOLI -            653   2.6e-26   92.0   0.0   1   1   6.7e-30     5e-26   91.1   0.0     2   122   391   508   390   508 0.97 Collagenase
Aminotran_1_2        PF00155.16   363 sp|P77730|YDCR_ECOLI -            468   5.9e-32  111.0   0.0   1   1   2.5e-35   9.3e-32  110.3   0.0    44   348   145   445   120   458 0.88 Aminotransferase class I and II
GntR                 PF00392.16    64 sp|P77730|YDCR_ECOLI -            468   6.5e-15   54.3   0.1   1   1   5.9e-18   2.2e-14   52.6   0.0     1    64     3    66     3    66 0.98 Bacterial regulatory proteins, gntR family
Cys_Met_Meta_PP      PF01053.15   386 sp|P77730|YDCR_ECOLI -            468     0.014   13.7   0.0   1   1   5.3e-06      0.02   13.2   0.0    74   152   171   252   159   288 0.84 Cys/Met metabolism PLP-dependent enzyme
Aminotran_MocR       PF12897.2    425 sp|P77730|YDCR_ECOLI -            468      0.04   12.4   0.0   1   1   1.6e-05     0.061   11.8   0.0   126   357   193   409   169   439 0.67 Alanine-glyoxylate amino-transferase
ABC_tran             PF00005.22   137 sp|P77795|YDCT_ECOLI -            337   2.4e-32  112.0   0.0   1   1   4.1e-35   6.7e-32  110.6   0.0     2   136    21   162    20   163 0.94 ABC transporter
TOBE_2               PF08402.5     75 sp|P77795|YDCT_ECOLI -            337   1.3e-16   60.3   0.0   1   1   1.8e-19     3e-16   59.1   0.0     2    73   257   331   256   333 0.92 TOBE domain
AAA_21               PF13304.1    303 sp|P77795|YDCT_ECOLI -            337   3.2e-07   30.5   0.1   2   2   8.6e-08   0.00014   21.9   0.0   232   298   130   194   106   197 0.93 AAA domain
AAA_22               PF13401.1    131 sp|P77795|YDCT_ECOLI -            337    0.0027   17.8   0.8   1   1   2.2e-05     0.036   14.2   0.8     6   123    32   192    27   198 0.70 AAA domain
SMC_N                PF02463.14   220 sp|P77795|YDCT_ECOLI -            337    0.0051   16.0   0.4   2   2   9.9e-05      0.16   11.1   0.1   133   213   131   209    76   215 0.78 RecF/RecN/SMC N terminal domain
AAA_16               PF13191.1    185 sp|P77795|YDCT_ECOLI -            337     0.014   15.3   0.1   1   1   1.7e-05     0.027   14.4   0.1    23    81    29    84    18   191 0.58 AAA ATPase domain
AAA_10               PF12846.2    304 sp|P77795|YDCT_ECOLI -            337     0.037   13.4   0.1   1   1   4.3e-05     0.072   12.5   0.1     6    35    35    64    32   152 0.82 AAA-like domain
AAA_29               PF13555.1     62 sp|P77795|YDCT_ECOLI -            337     0.051   13.1   0.0   1   1   6.7e-05      0.11   12.0   0.0    13    40    21    47    18    50 0.81 P-loop containing region of AAA domain
SBP_bac_8            PF13416.1    281 sp|P76108|YDCS_ECOLI -            381     2e-26   93.3   4.0   1   1   7.1e-30   2.6e-26   92.9   4.0     2   265    56   326    55   333 0.83 Bacterial extracellular solute-binding protein
SBP_bac_1            PF01547.20   315 sp|P76108|YDCS_ECOLI -            381   1.1e-20   74.5   6.0   1   1   4.2e-24   1.6e-20   74.1   6.0    14   314    56   312    45   313 0.81 Bacterial extracellular solute-binding protein
SBP_bac_6            PF13343.1    242 sp|P76108|YDCS_ECOLI -            381   8.3e-17   61.3   1.9   1   2   1.5e-06    0.0055   16.0   0.2     5    76    89   164    87   171 0.76 Bacterial extracellular solute-binding protein
SBP_bac_6            PF13343.1    242 sp|P76108|YDCS_ECOLI -            381   8.3e-17   61.3   1.9   2   2   2.3e-15   8.4e-12   44.9   0.1   107   216   215   325   179   350 0.85 Bacterial extracellular solute-binding protein
DUF346               PF03984.8     40 sp|P76108|YDCS_ECOLI -            381    0.0057   16.0   1.5   2   2   0.00023      0.85    9.1   0.2    13    26   230   243   226   257 0.66 Repeat of unknown function (DUF346)
BPD_transp_1         PF00528.17   185 sp|P77156|YDCU_ECOLI -            313   2.9e-16   59.5  19.4   2   2   1.9e-20   2.9e-16   59.5  19.4     2   179   106   307   105   310 0.86 Binding-protein-dependent transport system inner membrane component
ABC_membrane_2       PF06472.10   282 sp|P31826|YDDA_ECOLI -            561   4.1e-48  163.9  10.1   1   1   6.2e-51   5.4e-48  163.5  10.1    10   281    14   301     8   302 0.95 ABC transporter transmembrane region 2
SbmA_BacA            PF05992.7    315 sp|P31826|YDDA_ECOLI -            561   1.6e-33  116.2  16.2   1   1   1.5e-35   1.3e-32  113.3  16.2     8   312    31   350    25   353 0.81 SbmA/BacA-like family
ABC_tran             PF00005.22   137 sp|P31826|YDDA_ECOLI -            561   4.7e-19   69.0   0.0   1   1   1.4e-21   1.2e-18   67.7   0.0     1   137   383   515   383   515 0.95 ABC transporter
AAA_21               PF13304.1    303 sp|P31826|YDDA_ECOLI -            561   9.2e-06   25.8   4.7   3   3     1e-06   0.00089   19.3   0.0   237   300   487   546   470   549 0.92 AAA domain
NACHT                PF05729.7    166 sp|P31826|YDDA_ECOLI -            561   0.00023   20.8   1.6   1   1   7.6e-06    0.0066   16.1   1.6     3   134   396   549   394   560 0.67 NACHT domain
SMC_N                PF02463.14   220 sp|P31826|YDDA_ECOLI -            561   0.00027   20.2   0.0   1   1   6.4e-07   0.00056   19.2   0.0   135   212   269   558   219   560 0.70 RecF/RecN/SMC N terminal domain
UPF0079              PF02367.12   123 sp|P31826|YDDA_ECOLI -            561    0.0077   15.8   0.0   1   1   1.8e-05     0.016   14.8   0.0    11    48   389   427   382   431 0.84 Uncharacterised P-loop hydrolase UPF0079
DUF258               PF03193.11   161 sp|P31826|YDDA_ECOLI -            561     0.011   14.9   0.0   1   1   2.1e-05     0.018   14.2   0.0    22    61   379   419   357   476 0.80 Protein of unknown function, DUF258
AAA_22               PF13401.1    131 sp|P31826|YDDA_ECOLI -            561     0.011   15.8   0.1   1   1   5.9e-05     0.052   13.7   0.0     7   108   396   526   392   547 0.58 AAA domain
AAA_30               PF13604.1    196 sp|P31826|YDDA_ECOLI -            561     0.012   15.1   0.0   1   1   4.1e-05     0.036   13.6   0.0    16    43   391   418   386   541 0.78 AAA domain
AAA_16               PF13191.1    185 sp|P31826|YDDA_ECOLI -            561     0.024   14.6   0.1   1   1   8.1e-05     0.071   13.0   0.1    22    46   391   415   377   419 0.80 AAA ATPase domain
AAA_29               PF13555.1     62 sp|P31826|YDDA_ECOLI -            561      0.07   12.6   0.0   1   1   0.00018      0.16   11.5   0.0    18    40   389   410   383   415 0.80 P-loop containing region of AAA domain
AAA_25               PF13481.1    194 sp|P31826|YDDA_ECOLI -            561      0.08   12.3   0.0   1   1   0.00025      0.22   10.8   0.0    18    56   375   416   358   434 0.79 AAA domain
T2SE                 PF00437.15   272 sp|P31826|YDDA_ECOLI -            561     0.091   11.6   0.0   1   1   0.00017      0.15   10.9   0.0   100   150   365   415   351   426 0.84 Type II/IV secretion system protein
cobW                 PF02492.14   178 sp|P31826|YDDA_ECOLI -            561       0.1   12.0   0.0   1   1   0.00028      0.24   10.8   0.0     3    21   396   414   394   423 0.88 CobW/HypB/UreG, nucleotide-binding domain
AAA_19               PF13245.1     76 sp|P31826|YDDA_ECOLI -            561      0.18   11.6   0.0   1   1   0.00049      0.43   10.3   0.0    11    36   394   421   386   466 0.78 Part of AAA domain
PhzC-PhzF            PF02567.11   281 sp|P37757|YDDE_ECOLI -            297   1.7e-87  293.2   0.0   1   1   1.3e-91   1.9e-87  293.0   0.0     1   280     8   290     8   291 0.97 Phenazine biosynthesis-like protein
EamA                 PF00892.15   126 sp|P46136|YDDG_ECOLI -            293   1.7e-13   50.6  36.7   1   2   3.9e-11   2.9e-07   30.5  11.5     1   125    15   137    15   138 0.92 EamA-like transporter family
EamA                 PF00892.15   126 sp|P46136|YDDG_ECOLI -            293   1.7e-13   50.6  36.7   2   2   8.4e-10   6.2e-06   26.2  17.2     1   123   167   285   167   288 0.81 EamA-like transporter family
TPT                  PF03151.11   153 sp|P46136|YDDG_ECOLI -            293     0.013   15.1   1.7   1   1   1.8e-06     0.013   15.1   1.7   110   150    95   135    38   136 0.82 Triose-phosphate Transporter family
HTH_3                PF01381.17    55 sp|P67699|YDDM_ECOLI -             94   2.2e-09   37.0   0.1   1   2   1.4e-11   2.1e-08   33.8   0.0     2    53    14    65    13    67 0.92 Helix-turn-helix
HTH_31               PF13560.1     64 sp|P67699|YDDM_ECOLI -             94    0.0075   16.4   0.1   1   1   1.2e-05     0.017   15.2   0.0    13    56    20    62    10    70 0.82 Helix-turn-helix domain
HTH_19               PF12844.2     64 sp|P67699|YDDM_ECOLI -             94    0.0091   16.0   0.0   1   1     1e-05     0.016   15.2   0.0     9    58    18    67    10    73 0.85 Helix-turn-helix domain
Sigma54_DBD          PF04552.8    160 sp|P67699|YDDM_ECOLI -             94     0.011   15.2   0.0   1   1   7.6e-06     0.011   15.2   0.0    50    87    22    59    11    90 0.88 Sigma-54, DNA binding domain
HTH_37               PF13744.1     80 sp|P67699|YDDM_ECOLI -             94     0.011   15.4   0.0   1   1   2.5e-05     0.037   13.8   0.0    23    56    13    46     7    49 0.94 Helix-turn-helix domain
CENP-B_N             PF04218.8     53 sp|P67699|YDDM_ECOLI -             94     0.016   14.6   0.0   1   1   1.6e-05     0.023   14.0   0.0    15    49    12    48    11    52 0.86 CENP-B N-terminal DNA-binding domain
HTH_26               PF13443.1     63 sp|P67699|YDDM_ECOLI -             94     0.017   15.3   0.0   1   1   2.1e-05     0.032   14.4   0.0     5    39    16    49     9    68 0.82 Cro/C1-type HTH DNA-binding domain
HTH_IclR             PF09339.5     52 sp|P67699|YDDM_ECOLI -             94      0.02   14.5   0.0   1   1   2.3e-05     0.034   13.7   0.0    18    40     9    43     3    44 0.75 IclR helix-turn-helix domain
HTH_28               PF13518.1     52 sp|P67699|YDDM_ECOLI -             94     0.053   13.5   0.0   1   1   0.00011      0.17   11.9   0.0     5    46    12    50    11    51 0.83 Helix-turn-helix domain
HTH_38               PF13936.1     44 sp|P67699|YDDM_ECOLI -             94     0.054   13.0   0.0   1   1   6.2e-05     0.092   12.3   0.0    13    40    13    41    11    43 0.83 Helix-turn-helix domain
DUF187               PF02638.10   311 sp|P64426|YDDW_ECOLI -            439  1.5e-138  460.8   1.1   1   1  8.7e-142  1.9e-138  460.6   1.1     1   311    55   390    55   390 0.99 Glycosyl hydrolase like GH101
DUF4434              PF14488.1    166 sp|P64426|YDDW_ECOLI -            439   8.3e-05   22.3   0.0   1   1   8.4e-08   0.00018   21.2   0.0    21    83    90   158    62   191 0.79 Domain of unknown function (DUF4434)
Glyco_hydro_31       PF01055.21   441 sp|P64426|YDDW_ECOLI -            439    0.0002   20.3   0.0   1   1   1.6e-07   0.00034   19.5   0.0    85   177   142   235   133   291 0.80 Glycosyl hydrolases family 31
Melibiase            PF02065.13   394 sp|P64426|YDDW_ECOLI -            439   0.00081   18.1   0.0   1   1   6.6e-07    0.0014   17.3   0.0   106   210   142   256   135   270 0.75 Melibiase
Alpha_L_fucos        PF01120.12   347 sp|P64426|YDDW_ECOLI -            439    0.0029   16.5   0.0   1   1   2.1e-06    0.0044   15.9   0.0   117   220   113   249   102   286 0.73 Alpha-L-fucosidase
Glyco_hydro_66       PF13199.1    559 sp|P64426|YDDW_ECOLI -            439    0.0051   15.2   0.0   1   1   3.3e-06    0.0069   14.8   0.0   115   267    86   237    75   279 0.78 Glycosyl hydrolase family 66
GHL6                 PF14871.1    132 sp|P64426|YDDW_ECOLI -            439     0.017   15.1   0.0   1   1   0.00014      0.29   11.1   0.0     7   130    96   234    92   236 0.57 Hypothetical glycosyl hydrolase 6
BPD_transp_1         PF00528.17   185 sp|P0AFR9|YDCV_ECOLI -            264   2.9e-13   49.7  13.6   1   1     2e-17   2.9e-13   49.7  13.6     2   167    80   247    79   258 0.78 Binding-protein-dependent transport system inner membrane component
Flavin_Reduct        PF01613.13   154 sp|P76121|YDDH_ECOLI -            189   9.3e-16   58.0   0.0   1   1   7.9e-20   1.2e-15   57.7   0.0     6   136    19   153    14   165 0.89 Flavin reductase like domain
MFS_1                PF07690.11   352 sp|P31126|YDEE_ECOLI -            395   6.1e-29  100.8  51.8   1   2   2.6e-32   6.3e-29  100.7  38.2     2   342    13   341    12   343 0.82 Major Facilitator Superfamily
MFS_3                PF05977.8    524 sp|P31126|YDEE_ECOLI -            395   8.1e-06   24.2   8.9   1   2   3.3e-09   8.1e-06   24.2   8.9    45   193    40   185    11   193 0.72 Transmembrane secretion effector
MFS_2                PF13347.1    428 sp|P31126|YDEE_ECOLI -            395   6.1e-05   21.5  13.1   1   3   2.5e-08   6.1e-05   21.5  13.1   227   342     9   123     3   133 0.85 MFS/sugar transport protein
MFS_1_like           PF12832.2     77 sp|P31126|YDEE_ECOLI -            395     7e-05   22.5   4.0   1   2   6.3e-08   0.00016   21.4   0.6    17    75    24    83    12    85 0.89 MFS_1 like family
Bacteriocin_IId      PF09221.5     66 sp|P31126|YDEE_ECOLI -            395     0.094   12.6   0.4   3   3   3.8e-05     0.094   12.6   0.4    17    55   275   314   272   319 0.90 Bacteriocin class IId cyclical uberolysin-like
Sulfatase            PF00884.18   308 sp|P77318|YDEN_ECOLI -            560  5.6e-102  341.0   2.1   1   1  1.9e-105  9.3e-102  340.3   2.1     1   308    58   408    58   408 0.98 Sulfatase
Phosphodiest         PF01663.17   365 sp|P77318|YDEN_ECOLI -            560   1.4e-12   47.6   0.7   1   1   7.6e-16   3.7e-12   46.2   0.7    18   245   106   348    98   350 0.65 Type I phosphodiesterase / nucleotide pyrophosphatase
DUF229               PF02995.12   497 sp|P77318|YDEN_ECOLI -            560   0.00047   18.7   0.0   3   3   8.1e-07     0.004   15.6   0.0   297   344   301   348   269   463 0.87 Protein of unknown function (DUF229)
CinA                 PF02464.12   155 sp|P31131|YDEJ_ECOLI -            172     3e-47  159.9   0.9   1   1   2.3e-51   3.4e-47  159.7   0.9     2   155    18   171    17   171 0.98 Competence-damaged protein
Radical_SAM          PF04055.16   166 sp|P76134|YDEM_ECOLI -            385   3.6e-16   59.7   0.0   1   1   2.1e-19   6.3e-16   58.9   0.0     6   165    11   174     7   175 0.89 Radical SAM superfamily
Fer4_12              PF13353.1    139 sp|P76134|YDEM_ECOLI -            385   1.3e-08   35.1   0.6   1   1     1e-11     3e-08   33.8   0.2    15   129    12   129     9   141 0.71 4Fe-4S single cluster domain
SPASM                PF13186.1     64 sp|P76134|YDEM_ECOLI -            385   8.9e-08   32.3   2.0   1   1     1e-10     3e-07   30.6   2.0     4    63   263   318   257   328 0.84 Iron-sulfur cluster-binding domain
Fer4_14              PF13394.1    119 sp|P76134|YDEM_ECOLI -            385   1.2e-06   28.4   0.9   1   1   8.6e-10   2.6e-06   27.4   0.1     7    91    11    97     9   119 0.75 4Fe-4S single cluster domain
DUF3641              PF12345.3    134 sp|P76134|YDEM_ECOLI -            385     3e-05   23.8   3.4   2   2   7.9e-07    0.0024   17.7   0.9    49   124   243   319   237   326 0.84 Protein of unknown function (DUF3641)
FimH_man-bind        PF09160.5    147 sp|P77588|YDEQ_ECOLI -            304   6.3e-61  204.5   0.8   1   2   1.3e-64   9.4e-61  203.9   0.1     1   147    27   171    27   171 0.99 FimH, mannose binding
Fimbrial             PF00419.15   145 sp|P77588|YDEQ_ECOLI -            304   9.8e-08   32.3   4.5   3   3   1.3e-11   9.8e-08   32.3   4.5     5   145   176   304   172   304 0.83 Fimbrial protein
Fimbrial             PF00419.15   145 sp|P77789|YDES_ECOLI -            176     2e-19   70.2   0.2   1   1   1.6e-23   2.4e-19   70.0   0.2     3   145    29   176    27   176 0.91 Fimbrial protein
Molybdopterin        PF00384.17   432 sp|P77561|YDEP_ECOLI -            759     2e-29  102.5   0.0   1   1     1e-32   5.1e-29  101.2   0.0     1   302   108   423   108   501 0.76 Molybdopterin oxidoreductase
Molydop_binding      PF01568.16   110 sp|P77561|YDEP_ECOLI -            759   1.7e-06   27.8   0.0   1   1   1.4e-09   6.8e-06   25.8   0.0     1   109   642   751   642   752 0.76 Molydopterin dinucleotide binding domain
Fimbrial             PF00419.15   145 sp|P77294|YDER_ECOLI -            167   4.7e-09   36.6   5.1   1   1     8e-13   5.9e-09   36.2   5.1     1   143    28   165    26   167 0.73 Fimbrial protein
DUF4454              PF14628.1    216 sp|P77294|YDER_ECOLI -            167     0.042   13.4   0.1   1   1     8e-06     0.059   12.9   0.1    43    89    91   137    75   151 0.85 Domain of unknown function (DUF4454)
adh_short            PF00106.20   167 sp|P39831|YDFG_ECOLI -            248   2.7e-34  118.4   0.0   1   1   2.5e-37   3.4e-34  118.1   0.0     2   166     2   165     1   166 0.93 short chain dehydrogenase
KR                   PF08659.5    181 sp|P39831|YDFG_ECOLI -            248   2.3e-13   50.1   0.0   1   1   2.5e-16   3.3e-13   49.6   0.0     3   173     3   170     2   177 0.89 KR domain
adh_short_C2         PF13561.1    241 sp|P39831|YDFG_ECOLI -            248   2.6e-13   50.3   0.0   1   1   2.4e-16   3.2e-13   50.0   0.0     3   220     9   218     7   232 0.86 Enoyl-(Acyl carrier protein) reductase
Epimerase            PF01370.16   236 sp|P39831|YDFG_ECOLI -            248   1.4e-06   27.9   0.1   1   1   3.2e-09   4.2e-06   26.3   0.0     1   117     3   135     3   176 0.80 NAD dependent epimerase/dehydratase family
NAD_binding_10       PF13460.1    183 sp|P39831|YDFG_ECOLI -            248   2.3e-06   27.7   0.0   1   1   2.2e-09     3e-06   27.3   0.0     1    60     3    67     3   173 0.76 NADH(P)-binding
F420_oxidored        PF03807.12    96 sp|P39831|YDFG_ECOLI -            248   0.00031   21.1   0.0   1   1   5.1e-07   0.00069   19.9   0.0    10    58    12    60     5    67 0.80 NADP oxidoreductase coenzyme F420-dependent
Polysacc_synt_2      PF02719.10   294 sp|P39831|YDFG_ECOLI -            248   0.00091   18.2   0.0   1   1   1.8e-06    0.0025   16.7   0.0     1   156     3   165     3   192 0.57 Polysaccharide biosynthesis protein
Saccharop_dh         PF03435.13   386 sp|P39831|YDFG_ECOLI -            248    0.0033   16.4   0.0   1   1     3e-06     0.004   16.1   0.0     1    78     3    85     3   153 0.83 Saccharopine dehydrogenase
NmrA                 PF05368.8    233 sp|P39831|YDFG_ECOLI -            248    0.0078   15.4   0.0   1   1   8.3e-06     0.011   14.9   0.0     1    64     3    67     3    92 0.80 NmrA-like family
RmlD_sub_bind        PF04321.12   287 sp|P39831|YDFG_ECOLI -            248    0.0085   15.0   0.1   1   1   1.3e-05     0.018   13.9   0.0     1    50     1    68     1    83 0.88 RmlD substrate binding domain
MFS_1                PF07690.11   352 sp|P77228|YDFJ_ECOLI -            427   1.6e-35  122.5  49.2   1   2   1.2e-30     6e-27   94.2  31.6    33   291    27   297     5   301 0.82 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P77228|YDFJ_ECOLI -            427   1.6e-35  122.5  49.2   2   2   8.6e-15   4.2e-11   42.1   9.6    39   187   256   409   254   423 0.82 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P77228|YDFJ_ECOLI -            427   3.4e-25   88.5  32.7   1   2   5.5e-27   2.7e-23   82.2  13.7    51   201    34   194    10   204 0.88 Sugar (and other) transporter
Sugar_tr             PF00083.19   451 sp|P77228|YDFJ_ECOLI -            427   3.4e-25   88.5  32.7   2   2   1.9e-06    0.0094   14.5   9.5   241   448   206   408   191   411 0.77 Sugar (and other) transporter
MFS_2                PF13347.1    428 sp|P77228|YDFJ_ECOLI -            427   3.2e-09   35.7  29.6   1   3   2.9e-08   0.00015   20.3   4.9   262   334    26   109     6   122 0.76 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P77228|YDFJ_ECOLI -            427   3.2e-09   35.7  29.6   2   3   2.5e-09   1.2e-05   23.9  12.3   137   335   123   325   109   338 0.77 MFS/sugar transport protein
Mannitol_dh_C        PF08125.8    245 sp|P77260|YDFI_ECOLI -            486   4.5e-98  327.2   0.0   2   2  1.4e-101     1e-97  326.1   0.0     1   244   213   459   213   460 0.98 Mannitol dehydrogenase C-terminal domain
Mannitol_dh          PF01232.18   151 sp|P77260|YDFI_ECOLI -            486   2.8e-52  176.6   0.0   1   1   5.9e-56   4.4e-52  176.0   0.0     2   151    23   185    22   185 0.99 Mannitol dehydrogenase Rossmann domain
Trypsin              PF00089.21   220 sp|P76176|YDGD_ECOLI -            273   1.2e-11   44.6   0.0   1   1   6.7e-15   3.3e-11   43.2   0.0     9   198    50   244    44   266 0.72 Trypsin
Trypsin_2            PF13365.1    120 sp|P76176|YDGD_ECOLI -            273   1.7e-07   31.2   0.0   1   1   5.7e-11   2.8e-07   30.5   0.0     1   120    69   240    69   240 0.66 Trypsin-like peptidase domain
Peptidase_C4         PF00863.14   235 sp|P76176|YDGD_ECOLI -            273      0.15   10.9   0.0   1   1     6e-05      0.29   10.0   0.0   133   173   203   245   184   253 0.77 Peptidase family C4
GFO_IDH_MocA         PF01408.17   120 sp|P77376|YDGJ_ECOLI -            346   2.5e-25   89.3   0.0   1   1   1.1e-28     4e-25   88.6   0.0     1   120     5   122     5   122 0.96 Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C       PF02894.12   115 sp|P77376|YDGJ_ECOLI -            346   2.4e-18   66.0   0.0   1   1     1e-21   3.8e-18   65.3   0.0     1   115   134   241   134   241 0.97 Oxidoreductase family, C-terminal alpha/beta domain
Semialdhyde_dh       PF01118.19   121 sp|P77376|YDGJ_ECOLI -            346   4.2e-05   23.8   0.0   1   1   1.9e-08     7e-05   23.1   0.0     1    95     6    94     6   100 0.88 Semialdehyde dehydrogenase, NAD binding domain
AAA_33               PF13671.1    143 sp|P77376|YDGJ_ECOLI -            346     0.023   14.5   0.0   1   1   1.1e-05     0.042   13.7   0.0    59   102    77   120    18   127 0.87 AAA domain
MFS_1                PF07690.11   352 sp|P37597|YDHC_ECOLI -            403   6.6e-43  146.7  41.4   1   2   1.8e-46   6.6e-43  146.7  41.4     4   345    14   341    11   348 0.86 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P37597|YDHC_ECOLI -            403   4.8e-09   35.3   4.6   1   1   1.3e-12   4.8e-09   35.3   4.6    44   123    39   115    16   181 0.89 Sugar (and other) transporter
MFS_2                PF13347.1    428 sp|P37597|YDHC_ECOLI -            403   4.7e-06   25.2   7.0   1   3   1.3e-09   4.7e-06   25.2   7.0   226   343     7   122     4   129 0.90 MFS/sugar transport protein
MFS_3                PF05977.8    524 sp|P37597|YDHC_ECOLI -            403    0.0004   18.6  10.8   1   2   1.1e-07    0.0004   18.6  10.8    52   203    43   194     8   226 0.84 Transmembrane secretion effector
Aldo_ket_red         PF00248.16   283 sp|P76187|YDHF_ECOLI -            298   6.5e-54  182.6   0.0   1   1   4.9e-58   7.3e-54  182.4   0.0     2   281    17   291    16   293 0.95 Aldo/keto reductase family
HlyD                 PF00529.15   305 sp|P76185|YDHJ_ECOLI -            285   3.1e-46  158.0   5.8   1   2   2.1e-22   6.3e-19   68.4   2.1     1    77    44   120    44   130 0.92 HlyD family secretion protein
HlyD                 PF00529.15   305 sp|P76185|YDHJ_ECOLI -            285   3.1e-46  158.0   5.8   2   2   9.6e-30   2.8e-26   92.5   0.2   138   301   127   278   116   282 0.91 HlyD family secretion protein
HlyD_2               PF12700.2    328 sp|P76185|YDHJ_ECOLI -            285   1.1e-21   77.3   0.3   1   1   5.1e-25   1.5e-21   76.9   0.3    15   239    38   229    31   242 0.86 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P76185|YDHJ_ECOLI -            285   9.9e-19   67.6   0.1   1   2   4.7e-07    0.0014   18.9   0.1     2    51    47   100    46   145 0.81 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P76185|YDHJ_ECOLI -            285   9.9e-19   67.6   0.1   2   2   2.1e-15   6.2e-12   45.7   0.0     1    82   153   232   153   248 0.90 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P76185|YDHJ_ECOLI -            285   4.6e-18   64.6   2.0   1   3   2.3e-18   6.8e-15   54.4   1.0     1    50    43    92    43   103 0.89 Biotin-lipoyl like
Biotin_lipoyl        PF00364.17    74 sp|P76185|YDHJ_ECOLI -            285   2.3e-06   27.1   0.0   1   2   2.4e-05     0.071   12.7   0.1    44    74    45    75    43    75 0.93 Biotin-requiring enzyme
Biotin_lipoyl        PF00364.17    74 sp|P76185|YDHJ_ECOLI -            285   2.3e-06   27.1   0.0   2   2   4.4e-05      0.13   11.9   0.0    42    73   150   181   150   182 0.94 Biotin-requiring enzyme
FUSC                 PF04632.7    650 sp|P76186|YDHK_ECOLI -            670  5.5e-163  543.8  47.2   1   1  1.7e-166  6.3e-163  543.6  47.2     1   649    20   662    20   663 0.97 Fusaric acid resistance protein family
FUSC_2               PF13515.1    128 sp|P76186|YDHK_ECOLI -            670   3.4e-16   59.3  13.2   1   1   9.1e-20   3.4e-16   59.3  13.2     1   125    33   163    31   166 0.86 Fusaric acid resistance protein-like
DUF939               PF06081.6    141 sp|P76186|YDHK_ECOLI -            670    0.0023   17.8   6.5   1   1   6.2e-07    0.0023   17.8   6.5    10   137    27   166    23   170 0.68 Bacterial protein of unknown function (DUF939)
ALMT                 PF11744.3    406 sp|P76186|YDHK_ECOLI -            670    0.0068   15.1   5.5   1   1   3.5e-06     0.013   14.1   5.5    40   171    45   171    16   192 0.68 Aluminium activated malate transporter
AFOR_C               PF01314.13   382 sp|P76192|YDHV_ECOLI -            700   2.7e-81  273.1   0.0   1   1     9e-85   3.3e-81  272.8   0.0     3   382   227   685   225   685 0.90 Aldehyde ferredoxin oxidoreductase, domains 2 & 3
AFOR_N               PF02730.10   202 sp|P76192|YDHV_ECOLI -            700   6.2e-70  234.6   0.3   1   1   2.5e-73   9.4e-70  234.0   0.3     1   202     5   206     5   206 0.97 Aldehyde ferredoxin oxidoreductase, N-terminal domain
MASE2                PF05230.6     91 sp|P76192|YDHV_ECOLI -            700      0.11   12.4   0.1   1   1   6.3e-05      0.23   11.4   0.1    60    81    85   106    74   113 0.88 MASE2 domain
Toxin_6              PF05453.7     28 sp|P76192|YDHV_ECOLI -            700      0.29   11.3   1.8   1   1   0.00017      0.64   10.2   1.8     2    18   306   322   306   325 0.91 BmTXKS1/BmP02 toxin family
MFS_1                PF07690.11   352 sp|P77389|YDHP_ECOLI -            389     5e-31  107.7  60.4   1   2   3.7e-34   1.4e-30  106.2  44.9     1   333    10   323    10   331 0.86 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P77389|YDHP_ECOLI -            389     5e-31  107.7  60.4   2   2    0.0002      0.74    8.4   7.8   122   172   326   375   320   385 0.80 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P77389|YDHP_ECOLI -            389   1.6e-06   27.0  15.8   1   1   4.3e-10   1.6e-06   27.0  15.8    48   190    42   178    31   183 0.93 Sugar (and other) transporter
DUF1228              PF06779.9     85 sp|P77389|YDHP_ECOLI -            389     0.012   15.6   4.1   1   4   3.2e-06     0.012   15.6   4.1     3    68    16    80    12    98 0.70 Protein of unknown function (DUF1228)
DUF1186              PF06685.6    249 sp|P77389|YDHP_ECOLI -            389      0.17   11.0   0.0   1   1   6.5e-05      0.24   10.5   0.0    65   138    62   135    57   143 0.80 Protein of unknown function (DUF1186)
Shikimate_dh_N       PF08501.6     83 sp|P0A6D5|YDIB_ECOLI -            288   1.2e-26   92.5   0.0   1   1     5e-30   2.5e-26   91.5   0.0     1    83    12    94    12    94 0.99 Shikimate dehydrogenase substrate binding domain
Shikimate_DH         PF01488.15   135 sp|P0A6D5|YDIB_ECOLI -            288   6.1e-07   29.6   0.0   1   1     2e-10     1e-06   28.8   0.0     9    95   121   216   114   230 0.86 Shikimate / quinate 5-dehydrogenase
Methyltransf_16      PF10294.4    174 sp|P0A6D5|YDIB_ECOLI -            288      0.11   11.9   0.1   1   1     4e-05       0.2   11.1   0.1    68   142   174   245   164   253 0.79 Putative methyltransferase
UPF0118              PF01594.11   327 sp|P0AFS7|YDIK_ECOLI -            370   1.7e-65  221.1  41.1   1   1   1.3e-69   1.9e-65  220.9  41.1     2   327    15   345    14   345 0.99 Domain of unknown function DUF20
MFS_1                PF07690.11   352 sp|P76197|YDIM_ECOLI -            404     4e-28   98.1  51.7   1   2     4e-24     3e-20   72.2  38.2     3   292    14   291     8   292 0.80 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P76197|YDIM_ECOLI -            404     4e-28   98.1  51.7   2   2   6.8e-14     5e-10   38.6  15.8    37   183   249   395   244   402 0.79 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P76197|YDIM_ECOLI -            404     0.022   13.3  44.7   1   3   1.4e-05       0.1   11.1  18.6     9   192    11   184     6   188 0.69 Sugar (and other) transporter
Sugar_tr             PF00083.19   451 sp|P76197|YDIM_ECOLI -            404     0.022   13.3  44.7   3   3   6.9e-05      0.51    8.8   6.4   350   434   300   382   299   391 0.84 Sugar (and other) transporter
CoA_trans            PF01144.18   217 sp|P37766|YDIF_ECOLI -            531   2.1e-57  193.7   0.2   1   2   6.8e-61   5.1e-57  192.5   0.1     2   216    16   252    15   253 0.98 Coenzyme A transferase
MFS_1                PF07690.11   352 sp|P76198|YDIN_ECOLI -            421   1.9e-32  112.3  63.2   1   2   9.3e-34   6.9e-30  103.9  44.7     1   352    18   356    18   356 0.80 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P76198|YDIN_ECOLI -            421   1.9e-32  112.3  63.2   2   2   6.2e-09   4.6e-05   22.2  10.5    91   171   309   392   308   410 0.80 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P76198|YDIN_ECOLI -            421      0.29    9.6  48.0   1   2   1.3e-05     0.095   11.2  17.3    10   153    15   151     8   189 0.68 Sugar (and other) transporter
Acyl-CoA_dh_1        PF00441.19   150 sp|P0A9U8|YDIO_ECOLI -            383     1e-45  155.5   4.6   1   1   4.2e-49   1.6e-45  154.9   4.6     1   150   228   377   228   377 0.98 Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_2        PF08028.6    134 sp|P0A9U8|YDIO_ECOLI -            383   1.5e-18   67.3   2.4   1   1   6.1e-22   2.3e-18   66.7   2.4     3   125   245   357   243   360 0.96 Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_N        PF02771.11   113 sp|P0A9U8|YDIO_ECOLI -            383   3.6e-17   62.9   0.0   1   1   2.1e-20   7.8e-17   61.8   0.0     1   105     6   108     6   114 0.92 Acyl-CoA dehydrogenase, N-terminal domain
Acyl-CoA_dh_M        PF02770.14    52 sp|P0A9U8|YDIO_ECOLI -            383   6.2e-15   54.4   0.0   1   1   3.5e-18   1.3e-14   53.4   0.0     1    50   121   170   121   172 0.98 Acyl-CoA dehydrogenase, middle domain
ETF_alpha            PF00766.14    86 sp|P77378|YDIR_ECOLI -            312   1.1e-30  105.0   0.3   1   1   2.8e-34   2.1e-30  104.1   0.3     2    85   189   273   188   274 0.97 Electron transfer flavoprotein FAD-binding domain
ETF                  PF01012.16   164 sp|P77378|YDIR_ECOLI -            312   4.8e-24   84.9   0.5   1   1   1.1e-27   8.4e-24   84.1   0.5     2   164     7   153     6   153 0.91 Electron transfer flavoprotein domain
Fer4_10              PF13237.1     52 sp|P77714|YDIT_ECOLI -             97   0.00046   19.9   1.2   1   1   2.4e-07    0.0007   19.3   1.2    16    51    42    75    42    76 0.85 4Fe-4S dicluster domain
Fer4_7               PF12838.2     52 sp|P77714|YDIT_ECOLI -             97    0.0018   18.6   0.8   1   1     9e-07    0.0027   18.0   0.8    10    48    43    75    40    79 0.90 4Fe-4S dicluster domain
Fer4_2               PF12797.2     22 sp|P77714|YDIT_ECOLI -             97    0.0075   16.1   0.5   2   2   2.5e-06    0.0075   16.1   0.5     4    20    59    75    56    87 0.85 4Fe-4S binding domain
Fer4_9               PF13187.1     55 sp|P77714|YDIT_ECOLI -             97     0.031   14.5   1.1   1   2   6.9e-05       0.2   11.9   2.2    10    50    43    75    42    80 0.83 4Fe-4S dicluster domain
PP2C                 PF00481.16   255 sp|P77714|YDIT_ECOLI -             97     0.096   12.0   0.0   1   1   3.7e-05      0.11   11.8   0.0    38   106     7    74     1    77 0.89 Protein phosphatase 2C
ETF                  PF01012.16   164 sp|P76201|YDIQ_ECOLI -            254   4.1e-32  111.1   0.7   1   1     4e-36   5.9e-32  110.6   0.7     8   164    28   183    22   183 0.92 Electron transfer flavoprotein domain
DAO                  PF01266.19   358 sp|P77337|YDIS_ECOLI -            429   2.8e-21   75.8   6.7   1   2   3.8e-10   2.9e-07   29.7   0.3     1    35     7    41     7    93 0.85 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|P77337|YDIS_ECOLI -            429   2.8e-21   75.8   6.7   2   2   6.9e-16   5.4e-13   48.5   1.3   145   356   106   328    99   330 0.62 FAD dependent oxidoreductase
FAD_binding_3        PF01494.14   356 sp|P77337|YDIS_ECOLI -            429   3.1e-13   49.5   0.9   1   1   7.7e-16     6e-13   48.5   0.2     2   191     6   183     5   207 0.81 FAD binding domain
FAD_oxidored         PF12831.2    428 sp|P77337|YDIS_ECOLI -            429   7.4e-09   35.1   1.0   1   1   9.5e-12   7.4e-09   35.1   1.0     1   143     7   157     7   161 0.77 FAD dependent oxidoreductase
FAD_binding_2        PF00890.19   417 sp|P77337|YDIS_ECOLI -            429   2.8e-08   33.0  15.3   1   3   4.8e-08   3.8e-05   22.7   6.6     1    36     7    42     7    48 0.93 FAD binding domain
FAD_binding_2        PF00890.19   417 sp|P77337|YDIS_ECOLI -            429   2.8e-08   33.0  15.3   3   3   5.5e-05     0.043   12.6   0.1   147   195   114   162    97   163 0.88 FAD binding domain
HI0933_like          PF03486.9    409 sp|P77337|YDIS_ECOLI -            429   2.1e-07   29.7   3.2   1   1   1.9e-09   1.5e-06   26.9   3.3     2   167     7   165     6   174 0.83 HI0933-like protein
NAD_binding_8        PF13450.1     68 sp|P77337|YDIS_ECOLI -            429   6.3e-07   29.3   1.3   1   1   2.1e-09   1.7e-06   27.9   1.3     1    32    10    41    10    64 0.90 NAD(P)-binding Rossmann-like domain
Thi4                 PF01946.12   230 sp|P77337|YDIS_ECOLI -            429   7.4e-07   28.4   1.7   1   2   9.1e-09   7.1e-06   25.2   0.6    18    64     6    52     3    58 0.94 Thi4 family
Pyr_redox_2          PF07992.9    201 sp|P77337|YDIS_ECOLI -            429   1.8e-06   28.0   1.5   1   1   6.5e-09   5.1e-06   26.5   1.5     1    91     7    95     7   307 0.85 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox            PF00070.22    80 sp|P77337|YDIS_ECOLI -            429   1.1e-05   25.7   1.5   1   3   9.7e-06    0.0076   16.6   1.0     3    35     9    41     7    58 0.90 Pyridine nucleotide-disulphide oxidoreductase
GIDA                 PF01134.17   392 sp|P77337|YDIS_ECOLI -            429   0.00015   20.7   1.9   1   1   1.9e-07   0.00015   20.7   1.9     1    31     7    36     7    60 0.78 Glucose inhibited division protein A
Trp_halogenase       PF04820.9    454 sp|P77337|YDIS_ECOLI -            429    0.0003   19.5   4.4   1   2   0.00075      0.59    8.7   2.1     3    33     9    36     7    41 0.92 Tryptophan halogenase
Trp_halogenase       PF04820.9    454 sp|P77337|YDIS_ECOLI -            429    0.0003   19.5   4.4   2   2   0.00024      0.19   10.3   0.0   145   213    99   166    71   180 0.86 Tryptophan halogenase
Pyr_redox_3          PF13738.1    203 sp|P77337|YDIS_ECOLI -            429   0.00034   20.7   0.1   1   1   1.6e-06    0.0012   18.9   0.1     1   162     9   191     9   210 0.67 Pyridine nucleotide-disulphide oxidoreductase
Lycopene_cycl        PF05834.7    374 sp|P77337|YDIS_ECOLI -            429   0.00063   18.7   3.2   1   1   3.5e-06    0.0028   16.6   1.3     1   166     7   201     7   205 0.73 Lycopene cyclase protein
3HCDH_N              PF02737.13   180 sp|P77337|YDIS_ECOLI -            429    0.0016   18.1   2.3   1   2   6.8e-06    0.0053   16.4   0.4     3    33     9    39     7    78 0.90 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
GDI                  PF00996.13   439 sp|P77337|YDIS_ECOLI -            429    0.0023   16.3   0.2   1   2   7.8e-05     0.061   11.6   0.0     2    40     3    41     2    58 0.91 GDP dissociation inhibitor
GMC_oxred_N          PF00732.14   296 sp|P77337|YDIS_ECOLI -            429     0.011   14.8   0.3   2   2    0.0012      0.91    8.6   0.0   197   236   112   149   107   164 0.85 GMC oxidoreductase
ApbA                 PF02558.11   151 sp|P77337|YDIS_ECOLI -            429     0.043   13.2   0.2   1   1    0.0002      0.15   11.4   0.2     3    44    10    51     8    78 0.80 Ketopantoate reductase PanE/ApbA
ThiF                 PF00899.16   136 sp|P77337|YDIS_ECOLI -            429     0.068   12.9   0.7   1   1   0.00022      0.17   11.7   0.7     4    42     7    45     4    58 0.84 ThiF family
UPF0061              PF02696.9    487 sp|P77649|YDIU_ECOLI -            478  2.9e-220  731.6   0.1   1   1  2.2e-224  3.2e-220  731.5   0.1     1   487     1   454     1   454 0.99 Uncharacterized ACR, YdiU/UPF0061 family
EAL                  PF00563.15   236 sp|P76204|YDIV_ECOLI -            237   3.2e-12   46.4   0.2   1   1   3.1e-16   4.6e-12   45.9   0.2    15   233    13   223     5   225 0.78 EAL domain
Nitroreductase       PF00881.19   165 sp|P0ACY1|YDJA_ECOLI -            183   2.2e-25   89.4   0.1   1   1   1.7e-29   2.5e-25   89.2   0.1     2   164     8   161     7   162 0.94 Nitroreductase family
Sugar_tr             PF00083.19   451 sp|P38055|YDJE_ECOLI -            452   1.4e-34  119.4  39.8   1   1   2.2e-38   1.7e-34  119.2  39.8    45   450    56   451    24   452 0.85 Sugar (and other) transporter
MFS_1                PF07690.11   352 sp|P38055|YDJE_ECOLI -            452   2.9e-33  115.0  62.0   1   2   4.2e-36   3.1e-32  111.6  48.5     5   352    31   403    25   403 0.83 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P38055|YDJE_ECOLI -            452   2.9e-33  115.0  62.0   2   2   1.9e-07    0.0014   17.3   5.6   106   175   371   440   369   451 0.85 Major Facilitator Superfamily
PfkB                 PF00294.19   301 sp|P77493|YDJH_ECOLI -            315     6e-67  225.8   0.3   1   1   9.9e-71   7.3e-67  225.6   0.3     3   297     5   299     3   303 0.94 pfkB family carbohydrate kinase
Phos_pyr_kin         PF08543.7    246 sp|P77493|YDJH_ECOLI -            315   5.7e-06   25.7   0.1   1   1   1.2e-09   9.2e-06   25.0   0.1   115   226   185   285   166   301 0.79 Phosphomethylpyrimidine kinase
MFS_1                PF07690.11   352 sp|P76230|YDJK_ECOLI -            459   2.8e-37  128.2  65.4   1   2   4.8e-35   3.6e-31  108.1  35.1     4   352    29   406    23   406 0.78 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P76230|YDJK_ECOLI -            459   2.8e-37  128.2  65.4   2   2   1.6e-12   1.2e-08   34.1  22.3    39   168   306   436   304   454 0.90 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P76230|YDJK_ECOLI -            459     2e-31  109.0  29.9   1   1   3.3e-35   2.5e-31  108.7  29.9    44   448    56   452    24   455 0.82 Sugar (and other) transporter
ADH_N                PF08240.7    109 sp|P77280|YDJJ_ECOLI -            347   2.1e-30  104.7   0.7   1   1   1.7e-33   4.1e-30  103.7   0.3     2   109    27   139    26   139 0.93 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N           PF00107.21   130 sp|P77280|YDJJ_ECOLI -            347   5.9e-26   90.5   1.8   1   1     3e-29   7.4e-26   90.2   0.8     2   127   180   303   179   306 0.93 Zinc-binding dehydrogenase
ADH_zinc_N_2         PF13602.1    127 sp|P77280|YDJJ_ECOLI -            347    0.0017   19.2   0.0   1   1   1.2e-06     0.003   18.4   0.0     1   115   212   330   212   337 0.76 Zinc-binding dehydrogenase
AlaDh_PNT_C          PF01262.16   168 sp|P77280|YDJJ_ECOLI -            347     0.017   14.7   0.3   1   1   1.2e-05     0.028   13.9   0.3    10    71   158   221   152   260 0.74 Alanine dehydrogenase/PNT, C-terminal domain
Cupin_2              PF07883.6     71 sp|P77280|YDJJ_ECOLI -            347      0.06   12.8   0.1   1   2   8.3e-05       0.2   11.1   0.0    14    54    54    94    44    99 0.89 Cupin domain
CPSase_L_chain       PF00289.17   110 sp|P77280|YDJJ_ECOLI -            347     0.085   12.9   1.0   1   2   0.00013      0.32   11.0   0.1     3    51   170   218   168   246 0.74 Carbamoyl-phosphate synthase L chain, N-terminal domain
ADH_N                PF08240.7    109 sp|P77539|YDJL_ECOLI -            358   9.2e-28   96.1   3.8   1   2   1.9e-31   9.2e-28   96.1   3.8     1   103    26   131    26   141 0.96 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N           PF00107.21   130 sp|P77539|YDJL_ECOLI -            358     1e-27   96.2   0.2   1   1   3.3e-31   1.6e-27   95.5   0.2     1   129   185   316   185   317 0.92 Zinc-binding dehydrogenase
ADH_zinc_N_2         PF13602.1    127 sp|P77539|YDJL_ECOLI -            358     0.005   17.7   0.0   2   2   4.6e-06     0.023   15.5   0.0     1   116   221   342   221   348 0.75 Zinc-binding dehydrogenase
SNARE_assoc          PF09335.6    123 sp|P76221|YDJZ_ECOLI -            235   1.4e-24   86.6   8.0   2   3   2.8e-28   1.4e-24   86.6   8.0     1   122    80   197    78   198 0.96 SNARE associated Golgi protein
OppC_N               PF12911.2     56 sp|P76221|YDJZ_ECOLI -            235     0.038   13.3   0.7   2   3   7.7e-06     0.038   13.3   0.7     6    37    49    80    47    93 0.92 N-terminal TM domain of oligopeptide transport permease C
ATG27                PF09451.5    269 sp|P76221|YDJZ_ECOLI -            235       0.1   11.8   1.2   1   1   3.3e-05      0.16   11.1   1.2   198   231   201   234   194   235 0.86 Autophagy-related protein 27
SNARE_assoc          PF09335.6    123 sp|P76219|YDJX_ECOLI -            236   3.4e-27   95.0   6.3   2   2   2.3e-31   3.4e-27   95.0   6.3     1   121    63   180    63   182 0.98 SNARE associated Golgi protein
SDF                  PF00375.13   390 sp|P77529|YDJN_ECOLI -            463  1.8e-102  343.0  34.3   1   1    3e-106  2.2e-102  342.7  34.3     1   390    29   443    29   443 0.96 Sodium:dicarboxylate symporter family
Vma12                PF11712.3    142 sp|P77529|YDJN_ECOLI -            463     0.019   14.7   0.5   1   1     7e-06     0.052   13.2   0.5    81   132     5    52     2    61 0.76 Endoplasmic reticulum-based factor for assembly of V-ATPase
Aldo_ket_red         PF00248.16   283 sp|P77256|YDJG_ECOLI -            326   1.2e-67  227.7   0.0   1   1     9e-72   1.3e-67  227.5   0.0     1   281    15   320    15   322 0.95 Aldo/keto reductase family
AAA_PrkA             PF08298.6    358 sp|P0ACY3|YEAG_ECOLI -            644  1.4e-180  599.6   0.0   1   1  9.2e-184    2e-180  599.1   0.0     2   358    20   380    19   380 0.99 PrkA AAA domain
PrkA                 PF06798.7    254 sp|P0ACY3|YEAG_ECOLI -            644   7.4e-86  287.5   2.2   1   1   7.6e-89   1.6e-85  286.4   2.2     1   254   382   636   382   636 0.98 PrkA serine protein kinase C-terminal domain
AAA_16               PF13191.1    185 sp|P0ACY3|YEAG_ECOLI -            644    0.0011   19.0   0.0   1   1   2.1e-06    0.0044   17.0   0.0     1    49    77   128    77   235 0.85 AAA ATPase domain
AAA_5                PF07728.9    139 sp|P0ACY3|YEAG_ECOLI -            644    0.0088   15.7   0.4   1   2   5.7e-05      0.12   12.0   0.1     3    30   107   134   105   140 0.86 AAA domain (dynein-related subfamily)
AAA_22               PF13401.1    131 sp|P0ACY3|YEAG_ECOLI -            644     0.019   15.1   0.0   1   1   6.1e-05      0.13   12.4   0.0     3    28   102   127    99   156 0.88 AAA domain
Mg_chelatase         PF01078.16   207 sp|P0ACY3|YEAG_ECOLI -            644      0.14   11.3   0.0   1   1   0.00017      0.37    9.9   0.0    25    46   106   127    86   133 0.85 Magnesium chelatase, subunit ChlI
DUF444               PF04285.7    421 sp|P76235|YEAH_ECOLI -            427  3.3e-200  665.1   2.7   1   1  2.5e-204  3.7e-200  664.9   2.7     1   420     1   422     1   423 1.00 Protein of unknown function (DUF444)
Aldose_epim          PF01263.15   300 sp|P39173|YEAD_ECOLI -            294   1.5e-46  158.9   0.1   1   1   1.2e-50   1.8e-46  158.6   0.1     1   283    27   274    27   285 0.89 Aldose 1-epimerase
DUF441               PF04284.8    140 sp|P0ACY6|YEAL_ECOLI -            148   8.3e-47  158.5  20.1   1   1   2.6e-50   9.6e-47  158.3  20.1     1   140     7   145     7   145 0.99 Protein of unknown function (DUF441)
Tmemb_14             PF03647.8     96 sp|P0ACY6|YEAL_ECOLI -            148       6.2    7.2  14.2   2   2   0.00021      0.79   10.1   6.2     3    44    87   128    85   146 0.92 Transmembrane proteins 14C
MFS_1                PF07690.11   352 sp|P76242|YEAN_ECOLI -            393   1.9e-20   72.8  53.2   1   2   4.4e-22   6.6e-18   64.5  49.5     6   352    24   349    16   349 0.82 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P76242|YEAN_ECOLI -            393   1.9e-20   72.8  53.2   2   2   1.4e-08   0.00021   20.1  15.6    67   172   282   387   277   393 0.81 Major Facilitator Superfamily
Transgly_assoc       PF04226.8     48 sp|P64485|YEAQ_ECOLI -             82   1.5e-16   60.1  12.5   2   2     1e-19   1.5e-16   60.1  12.5     1    47    33    81    33    82 0.97 Transglycosylase associated protein
7TM-7TMR_HD          PF07698.6    194 sp|P64485|YEAQ_ECOLI -             82      0.09   12.2   8.1   2   2   0.00015      0.22   10.9   4.4    84   126    38    82    31    82 0.78 7TM receptor with intracellular HD hydrolase
PrgI                 PF12666.2     93 sp|P64485|YEAQ_ECOLI -             82      0.48   10.6   4.8   1   1   0.00038      0.56   10.3   4.1    24    80     6    68     3    73 0.80 PrgI family protein
DUF2306              PF10067.4    103 sp|P64485|YEAQ_ECOLI -             82      0.57   10.3   6.4   2   2   0.00036      0.53   10.4   2.4    16    58    32    73    26    82 0.74 Predicted membrane protein (DUF2306)
Fer2                 PF00111.22    78 sp|P76254|YEAX_ECOLI -            321   2.6e-12   46.3   3.7   1   1   1.9e-15   5.7e-12   45.2   3.7     6    77   242   312   238   313 0.88 2Fe-2S iron-sulfur cluster binding domain
FAD_binding_6        PF00970.19    99 sp|P76254|YEAX_ECOLI -            321   1.6e-10   40.9   0.0   1   1   1.4e-13     4e-10   39.7   0.0     2    97     9   106     8   108 0.90 Oxidoreductase FAD-binding domain
NAD_binding_1        PF00175.16   109 sp|P76254|YEAX_ECOLI -            321   4.1e-10   40.1   0.0   1   1   8.3e-13   2.5e-09   37.6   0.0     1   108   117   207   117   208 0.81 Oxidoreductase NAD-binding domain
NAD_binding_6        PF08030.7    156 sp|P76254|YEAX_ECOLI -            321   4.1e-05   23.5   0.1   1   2   6.6e-06      0.02   14.8   0.1     5    24   116   135   113   145 0.90 Ferric reductase NAD binding domain
Fer2_3               PF13085.1    110 sp|P76254|YEAX_ECOLI -            321     0.035   13.9   0.2   1   1   2.4e-05     0.072   12.9   0.2    33    64   253   282   219   312 0.79 2Fe-2S iron-sulfur cluster binding domain
Ring_hydroxyl_A      PF00848.14   209 sp|P0ABR7|YEAW_ECOLI -            374   6.3e-36  123.9   0.6   1   1   1.8e-39   8.7e-36  123.5   0.6     3   205   184   370   182   374 0.91 Ring hydroxylating alpha subunit (catalytic domain)
Rieske               PF00355.21    97 sp|P0ABR7|YEAW_ECOLI -            374   4.6e-21   74.1   0.1   1   1   1.6e-24   7.7e-21   73.4   0.1     1    86    46   130    46   148 0.88 Rieske [2Fe-2S] domain
Rieske_2             PF13806.1    104 sp|P0ABR7|YEAW_ECOLI -            374    0.0031   17.2   0.0   1   1   1.1e-06    0.0056   16.3   0.0     1    83    46   124    46   151 0.84 Rieske-like [2Fe-2S] domain
Transcrip_reg        PF01709.15   234 sp|P0A8A0|YEBC_ECOLI -            246     1e-98  329.1   0.2   1   1  7.6e-103   1.1e-98  329.0   0.2     1   233     5   236     5   237 0.98 Transcriptional regulator
BCCT                 PF02028.12   485 sp|P0ABD1|YEAV_ECOLI -            481  3.4e-125  418.0  35.0   1   1  2.6e-129  3.8e-125  417.8  35.0    46   485     2   444     1   444 0.98 BCCT family transporter
YebF                 PF13995.1     89 sp|P33219|YEBF_ECOLI -            118   6.3e-37  125.4   0.5   1   1     1e-40   7.7e-37  125.1   0.5     2    89    29   116    28   116 0.98 YebF-like protein
Attacin_N            PF03768.10    67 sp|P33219|YEBF_ECOLI -            118     0.084   12.7   0.0   1   1     2e-05      0.15   11.9   0.0    29    63    13    47     5    50 0.88 Attacin, N-terminal region
PqiA                 PF04403.8    160 sp|P0AD03|YEBS_ECOLI -            427   1.4e-82  275.0  28.0   1   2   5.1e-40   5.4e-37  126.8   8.5     1   160    65   221    65   221 0.96 Paraquat-inducible protein A
PqiA                 PF04403.8    160 sp|P0AD03|YEBS_ECOLI -            427   1.4e-82  275.0  28.0   2   2   1.6e-48   1.6e-45  154.5  11.5     1   158   262   420   262   422 0.97 Paraquat-inducible protein A
Tmemb_55A            PF09788.4    256 sp|P0AD03|YEBS_ECOLI -            427   0.00035   19.7   2.1   1   2   1.8e-06    0.0019   17.3   0.1   152   247    23   135     7   143 0.77 Transmembrane protein 55A
zf-FPG_IleRS         PF06827.9     30 sp|P0AD03|YEBS_ECOLI -            427    0.0039   16.7   1.2   1   2   3.7e-06    0.0039   16.7   1.2     2    28    29    55    28    56 0.96 Zinc finger found in FPG and IleRS
GAGA                 PF09237.6     54 sp|P0AD03|YEBS_ECOLI -            427     0.052   13.1   0.1   1   1   4.9e-05     0.052   13.1   0.1    21    39    45    63    41    68 0.90 GAGA factor
DZR                  PF12773.2     50 sp|P0AD03|YEBS_ECOLI -            427     0.064   13.0   9.3   2   3   0.00047       0.5   10.2   1.7     1    23    31    59    31    66 0.85 Double zinc ribbon
zinc_ribbon_4        PF13717.1     36 sp|P0AD03|YEBS_ECOLI -            427      0.16   11.6   5.0   1   2   0.00032      0.34   10.6   1.2     4    35    30    58    30    59 0.91 zinc-ribbon domain
zinc_ribbon_5        PF13719.1     37 sp|P0AD03|YEBS_ECOLI -            427      0.18   11.4   5.1   1   2   0.00031      0.33   10.5   1.2     4    35    30    58    30    59 0.91 zinc-ribbon domain
IBR                  PF01485.16    64 sp|P0AD03|YEBS_ECOLI -            427       3.3    7.6   7.4   1   1   0.00027      0.28   11.0   0.4    18    48    28    56    11    58 0.84 IBR domain
Pox_P21              PF05313.7    190 sp|P0AD03|YEBS_ECOLI -            427       9.5    5.4   8.3   1   1   0.00071      0.76    9.0   2.7    78   123   308   355   297   394 0.69 Poxvirus P21 membrane protein
MFS_1                PF07690.11   352 sp|P76269|YEBQ_ECOLI -            457   2.8e-50  171.0  45.3   1   1   5.6e-54   2.8e-50  171.0  45.3     2   351    22   412    21   413 0.89 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P76269|YEBQ_ECOLI -            457   1.1e-08   34.0  16.1   1   3   2.3e-12   1.1e-08   34.0  16.1    44   192    49   192    18   195 0.88 Sugar (and other) transporter
MFS_3                PF05977.8    524 sp|P76269|YEBQ_ECOLI -            457    0.0002   19.6  14.4   1   2     4e-08    0.0002   19.6  14.4    12   214    18   216    10   242 0.90 Transmembrane secretion effector
MCE                  PF02470.15    81 sp|P76272|YEBT_ECOLI -            877   1.3e-64  214.2  10.4   1   7   3.5e-21   5.2e-17   61.6   0.1     2    81    46   137    45   137 0.97 mce related protein
MCE                  PF02470.15    81 sp|P76272|YEBT_ECOLI -            877   1.3e-64  214.2  10.4   2   7   1.4e-08   0.00021   21.2   0.0     5    66   163   234   160   249 0.82 mce related protein
MCE                  PF02470.15    81 sp|P76272|YEBT_ECOLI -            877   1.3e-64  214.2  10.4   3   7   1.6e-11   2.3e-07   30.6   0.0     2    76   280   355   279   369 0.88 mce related protein
MCE                  PF02470.15    81 sp|P76272|YEBT_ECOLI -            877   1.3e-64  214.2  10.4   4   7   1.2e-09   1.7e-05   24.6   0.1     4    65   394   453   391   465 0.88 mce related protein
MCE                  PF02470.15    81 sp|P76272|YEBT_ECOLI -            877   1.3e-64  214.2  10.4   5   7   1.4e-05      0.21   11.5   0.0     3    54   515   574   513   595 0.82 mce related protein
MCE                  PF02470.15    81 sp|P76272|YEBT_ECOLI -            877   1.3e-64  214.2  10.4   6   7   1.2e-14   1.7e-10   40.7   0.0     4    81   636   724   634   724 0.96 mce related protein
MCE                  PF02470.15    81 sp|P76272|YEBT_ECOLI -            877   1.3e-64  214.2  10.4   7   7   1.9e-09   2.9e-05   24.0   0.0     3    63   748   808   746   823 0.87 mce related protein
CopD                 PF05425.8    105 sp|P76278|YEBZ_ECOLI -            290   1.1e-21   77.0  10.9   4   4   7.2e-26   1.1e-21   77.0  10.9     2   105   185   284   184   284 0.93 Copper resistance protein D
Isochorismatase      PF00857.15   174 sp|P0ADI7|YECD_ECOLI -            188   1.9e-38  132.1   0.0   1   1   1.5e-42   2.2e-38  131.9   0.0     1   173     9   182     9   183 0.90 Isochorismatase family
ABC_tran             PF00005.22   137 sp|P37774|YECC_ECOLI -            250   2.1e-36  125.2   0.0   1   1   9.3e-39   3.1e-36  124.7   0.0     1   137    19   173    19   173 0.91 ABC transporter
AAA_21               PF13304.1    303 sp|P37774|YECC_ECOLI -            250   1.5e-15   57.8   0.0   1   2   3.5e-07   0.00012   22.2   0.0     2    24    32    54    31   115 0.81 AAA domain
AAA_21               PF13304.1    303 sp|P37774|YECC_ECOLI -            250   1.5e-15   57.8   0.0   2   2   9.4e-11   3.1e-08   33.9   0.0   234   299   142   204   135   207 0.94 AAA domain
SMC_N                PF02463.14   220 sp|P37774|YECC_ECOLI -            250   3.8e-09   36.1   0.1   1   1   3.1e-10     1e-07   31.4   0.1    21   203    25   207     1   223 0.63 RecF/RecN/SMC N terminal domain
AAA_22               PF13401.1    131 sp|P37774|YECC_ECOLI -            250   1.9e-08   34.4   0.1   1   1     8e-10   2.6e-07   30.8   0.1     5   121    30   200    26   207 0.81 AAA domain
AAA_16               PF13191.1    185 sp|P37774|YECC_ECOLI -            250   8.7e-08   32.3   0.6   1   1   1.4e-09   4.6e-07   29.9   0.6    23   164    28   209    16   240 0.54 AAA ATPase domain
Arch_ATPase          PF01637.13   234 sp|P37774|YECC_ECOLI -            250   1.3e-05   25.0   0.0   1   1     6e-07    0.0002   21.1   0.0    16   171    25   209    22   223 0.71 Archaeal ATPase
ABC_ATPase           PF09818.4    448 sp|P37774|YECC_ECOLI -            250   1.3e-05   23.9   0.9   1   2    0.0013      0.43    9.1   0.2   241   265    25    50     9    52 0.88 Predicted ATPase of the ABC class
ABC_ATPase           PF09818.4    448 sp|P37774|YECC_ECOLI -            250   1.3e-05   23.9   0.9   2   2   0.00025     0.082   11.4   0.0   324   427   146   232   135   248 0.74 Predicted ATPase of the ABC class
AAA_15               PF13175.1    415 sp|P37774|YECC_ECOLI -            250   1.4e-05   24.3   0.0   1   2   0.00099      0.33    9.9   0.0    23    45    30    52     5    94 0.78 AAA ATPase domain
AAA_15               PF13175.1    415 sp|P37774|YECC_ECOLI -            250   1.4e-05   24.3   0.0   2   2   0.00015     0.048   12.7   0.0   372   410   165   202   149   207 0.85 AAA ATPase domain
AAA_10               PF12846.2    304 sp|P37774|YECC_ECOLI -            250   3.9e-05   23.2   0.1   1   1   8.3e-07   0.00027   20.4   0.1     4   143    32   195    29   239 0.62 AAA-like domain
AAA_29               PF13555.1     62 sp|P37774|YECC_ECOLI -            250     7e-05   22.2   0.0   1   1   3.9e-07   0.00013   21.4   0.0    13    45    20    51    13    59 0.82 P-loop containing region of AAA domain
AAA_23               PF13476.1    202 sp|P37774|YECC_ECOLI -            250   8.5e-05   22.9   0.0   1   1   4.4e-07   0.00015   22.1   0.0    14    41    20    51     3    53 0.72 AAA domain
AAA_13               PF13166.1    712 sp|P37774|YECC_ECOLI -            250   9.2e-05   21.1   0.0   2   2   3.7e-05     0.012   14.1   0.0   527   579   162   212   153   221 0.90 AAA domain
AAA_33               PF13671.1    143 sp|P37774|YECC_ECOLI -            250   0.00014   21.7   0.2   1   1   1.7e-06   0.00057   19.7   0.2     1    45    31    79    31   220 0.73 AAA domain
AAA_25               PF13481.1    194 sp|P37774|YECC_ECOLI -            250   0.00032   20.1   0.1   1   2   8.3e-05     0.027   13.8   0.0    31    51    27    47    16    51 0.87 AAA domain
AAA_17               PF13207.1    121 sp|P37774|YECC_ECOLI -            250    0.0004   21.1   1.0   1   1   2.7e-06   0.00088   20.0   1.0     1    18    31    48    31   242 0.96 AAA domain
MobB                 PF03205.9    140 sp|P37774|YECC_ECOLI -            250   0.00051   19.7   0.1   1   1   4.8e-06    0.0016   18.1   0.1     2    23    31    51    30    69 0.83 Molybdopterin guanine dinucleotide synthesis protein B
AAA_18               PF13238.1    129 sp|P37774|YECC_ECOLI -            250    0.0006   20.1   0.1   1   1   1.1e-05    0.0037   17.5   0.1     1    38    32    78    32   130 0.65 AAA domain
NACHT                PF05729.7    166 sp|P37774|YECC_ECOLI -            250    0.0013   18.4   0.0   1   1   9.2e-06     0.003   17.2   0.0     2    21    31    50    30    59 0.90 NACHT domain
cobW                 PF02492.14   178 sp|P37774|YECC_ECOLI -            250    0.0021   17.5   0.1   1   1   1.4e-05    0.0047   16.3   0.0     2    46    31    71    30    86 0.71 CobW/HypB/UreG, nucleotide-binding domain
AAA_14               PF13173.1    128 sp|P37774|YECC_ECOLI -            250    0.0031   17.4   0.0   1   1     9e-05      0.03   14.2   0.0     3    40    30    65    28   117 0.69 AAA domain
AAA_28               PF13521.1    163 sp|P37774|YECC_ECOLI -            250    0.0031   17.4   0.3   1   1   3.4e-05     0.011   15.6   0.0     2    28    32    63    31    94 0.71 AAA domain
DUF258               PF03193.11   161 sp|P37774|YECC_ECOLI -            250     0.004   16.3   0.1   1   1   1.7e-05    0.0057   15.8   0.1    14    64     7    58     1    87 0.75 Protein of unknown function, DUF258
AAA_19               PF13245.1     76 sp|P37774|YECC_ECOLI -            250    0.0052   16.5   3.0   1   2   7.7e-05     0.025   14.3   0.1     9    34    28    52    22    71 0.83 Part of AAA domain
AAA                  PF00004.24   132 sp|P37774|YECC_ECOLI -            250     0.006   16.7   0.1   1   2    0.0025      0.82    9.8   0.0     2    18    33    49    32    91 0.82 ATPase family associated with various cellular activities (AAA)
AAA_30               PF13604.1    196 sp|P37774|YECC_ECOLI -            250    0.0066   16.0   0.2   1   1   6.2e-05      0.02   14.4   0.0    17    55    28    66    23    87 0.75 AAA domain
PduV-EutP            PF10662.4    143 sp|P37774|YECC_ECOLI -            250    0.0072   15.8   0.0   1   1   4.5e-05     0.015   14.7   0.0     4    57    32    83    30    87 0.80 Ethanolamine utilisation - propanediol utilisation
SbcCD_C              PF13558.1     90 sp|P37774|YECC_ECOLI -            250     0.008   16.0   0.0   1   1   0.00027     0.089   12.7   0.0    32    90   144   189   132   189 0.75 Putative exonuclease SbcCD, C subunit
NB-ARC               PF00931.17   287 sp|P37774|YECC_ECOLI -            250     0.011   14.5   0.0   1   1   6.4e-05     0.021   13.6   0.0    20    40    30    50    15   105 0.88 NB-ARC domain
AAA_24               PF13479.1    213 sp|P37774|YECC_ECOLI -            250     0.013   15.0   0.0   1   1   0.00011     0.036   13.6   0.0     6    34    32    58    30    92 0.74 AAA domain
UPF0079              PF02367.12   123 sp|P37774|YECC_ECOLI -            250     0.014   14.9   0.0   1   1   8.2e-05     0.027   14.0   0.0    11    35    25    49    16    60 0.90 Uncharacterised P-loop hydrolase UPF0079
T2SE                 PF00437.15   272 sp|P37774|YECC_ECOLI -            250     0.018   13.9   1.8   1   1   0.00011     0.036   12.9   0.1   119   164    20    64     3    90 0.72 Type II/IV secretion system protein
TraB                 PF01963.12   259 sp|P37774|YECC_ECOLI -            250     0.022   14.2   0.0   1   1   0.00013     0.042   13.2   0.0    24    93    95   164    91   173 0.89 TraB family
G-alpha              PF00503.15   389 sp|P37774|YECC_ECOLI -            250     0.024   13.3   0.0   1   1   0.00012     0.038   12.6   0.0    62    88    33    64    27   132 0.82 G-protein alpha subunit
Miro                 PF08477.8    119 sp|P37774|YECC_ECOLI -            250     0.026   15.0   0.0   1   1   0.00025     0.084   13.3   0.0     2    26    32    59    31    97 0.72 Miro-like protein
ATP-synt_ab          PF00006.20   215 sp|P37774|YECC_ECOLI -            250     0.036   13.5   0.0   1   1   0.00014     0.047   13.1   0.0    15    68    29   199    15   234 0.80 ATP synthase alpha/beta family, nucleotide-binding domain
MMR_HSR1             PF01926.18   116 sp|P37774|YECC_ECOLI -            250     0.044   13.7   0.2   1   1   0.00026     0.087   12.7   0.2     2    21    32    53    31   202 0.70 50S ribosome-binding GTPase
FtsK_SpoIIIE         PF01580.13   205 sp|P37774|YECC_ECOLI -            250     0.047   13.1   0.1   1   1   0.00032      0.11   12.0   0.1    34    58    23    49     6    53 0.75 FtsK/SpoIIIE family
PRK                  PF00485.13   194 sp|P37774|YECC_ECOLI -            250     0.072   12.6   0.0   1   1   0.00036      0.12   11.9   0.0     1    53    31    83    31   106 0.68 Phosphoribulokinase / Uridine kinase family
Pox_A32              PF04665.7    241 sp|P37774|YECC_ECOLI -            250      0.08   12.2   0.1   1   1   0.00069      0.23   10.7   0.0    16    33    32    49    24    54 0.89 Poxvirus A32 protein
AAA_5                PF07728.9    139 sp|P37774|YECC_ECOLI -            250      0.11   12.1   0.2   1   1    0.0027       0.9    9.2   0.1     3    19    33    49    31    63 0.87 AAA domain (dynein-related subfamily)
ATP_bind_1           PF03029.12   238 sp|P37774|YECC_ECOLI -            250      0.12   11.9   0.1   1   1    0.0012      0.41   10.1   0.0     1    17    34    50    34    73 0.83 Conserved hypothetical ATP binding protein
RNA12                PF10443.4    431 sp|P37774|YECC_ECOLI -            250      0.12   10.8   0.0   1   1   0.00037      0.12   10.8   0.0    13    73    25    90    21   209 0.79 RNA12 protein
IstB_IS21            PF01695.12   178 sp|P37774|YECC_ECOLI -            250      0.13   11.6   0.2   1   1     0.003      0.98    8.8   0.0    47    65    29    47    19    53 0.84 IstB-like ATP binding protein
Adeno_IVa2           PF02456.10   370 sp|P37774|YECC_ECOLI -            250      0.16   10.6   0.0   1   1   0.00066      0.22   10.1   0.0    76   119    17    59     2    85 0.74 Adenovirus IVa2 protein
EamA                 PF00892.15   126 sp|P0AA70|YEDA_ECOLI -            306   1.3e-36  125.4  35.4   1   2   3.1e-25   2.3e-21   76.1  10.2     1   125    18   140    18   141 0.93 EamA-like transporter family
EamA                 PF00892.15   126 sp|P0AA70|YEDA_ECOLI -            306   1.3e-36  125.4  35.4   2   2   9.5e-19     7e-15   55.1  17.2     1   125   160   284   160   285 0.86 EamA-like transporter family
EmrE                 PF13536.1    113 sp|P0AA70|YEDA_ECOLI -            306    0.0018   18.4  37.8   2   3   2.4e-06     0.018   15.2   7.6     3   106    42   141    40   148 0.67 Multidrug resistance efflux transporter
EmrE                 PF13536.1    113 sp|P0AA70|YEDA_ECOLI -            306    0.0018   18.4  37.8   3   3   2.8e-06     0.021   15.0  10.8    39   106   217   285   186   288 0.74 Multidrug resistance efflux transporter
DUF72                PF01904.13   230 sp|P37348|YECE_ECOLI -            272   1.5e-52  178.6   1.1   1   1   2.4e-56   1.8e-52  178.3   1.1    11   229    21   251    11   252 0.90 Protein of unknown function DUF72
PilJ                 PF13675.1    112 sp|P37348|YECE_ECOLI -            272     0.066   13.5   0.0   1   1   1.7e-05      0.13   12.6   0.0    46    93   204   256   189   270 0.90 Type IV pili methyl-accepting chemotaxis transducer N-term
Sulf_transp          PF04143.9     43 sp|P31064|YEDE_ECOLI -            401   3.3e-19   68.6  35.9   1   2   1.8e-13   8.9e-10   38.4   8.1     3    41   114   153   112   155 0.94 Sulphur transport
Sulf_transp          PF04143.9     43 sp|P31064|YEDE_ECOLI -            401   3.3e-19   68.6  35.9   2   2   3.6e-15   1.8e-11   43.8   7.3     3    42   290   329   288   336 0.93 Sulphur transport
VanZ                 PF04892.7    133 sp|P31064|YEDE_ECOLI -            401    0.0091   15.9   0.5   1   1   6.5e-06     0.032   14.1   0.5    24   100   177   243   148   252 0.71 VanZ like family
DUF4073              PF13285.1    158 sp|P31064|YEDE_ECOLI -            401      0.17   11.3   0.3   1   1   5.2e-05      0.26   10.7   0.3     6    37   286   317   283   339 0.91 Domain of unknown function (DUF4073)
BPD_transp_1         PF00528.17   185 sp|P0AFT2|YECS_ECOLI -            222   1.9e-25   89.4  10.8   1   1   1.7e-29   2.6e-25   89.0  10.8     1   183    33   214    33   216 0.97 Binding-protein-dependent transport system inner membrane component
Acetyltransf_1       PF00583.19    83 sp|P76319|YEDL_ECOLI -            159   5.1e-10   39.2   0.1   1   1   1.4e-13   7.1e-10   38.7   0.1     2    82    53   130    52   131 0.91 Acetyltransferase (GNAT) family
Acetyltransf_10      PF13673.1    117 sp|P76319|YEDL_ECOLI -            159   1.4e-07   31.6   0.0   1   1   3.5e-11   1.7e-07   31.3   0.0     3   117    12   130    11   130 0.78 Acetyltransferase (GNAT) domain
Acetyltransf_7       PF13508.1     79 sp|P76319|YEDL_ECOLI -            159   7.2e-05   22.8   0.0   1   1   2.1e-08   0.00011   22.3   0.0     4    77    48   130    45   132 0.76 Acetyltransferase (GNAT) domain
DUF159               PF02586.9    208 sp|P76318|YEDK_ECOLI -            222   1.1e-46  158.9   0.0   1   1   1.7e-50   1.3e-46  158.8   0.0     1   207     1   215     1   216 0.91 Uncharacterised ACR, COG2135
DUF1491              PF07372.7    104 sp|P76318|YEDK_ECOLI -            222     0.024   14.5   0.0   1   1   6.2e-06     0.046   13.6   0.0    24    71   136   185   119   192 0.85 Protein of unknown function (DUF1491)
TusA                 PF01206.12    70 sp|P0AA31|YEDF_ECOLI -             77   3.8e-20   71.2   0.0   1   1   5.6e-24   4.2e-20   71.1   0.0     2    70     9    77     8    77 0.98 Sulfurtransferase TusA
DUF2249              PF10006.4     69 sp|P0AA31|YEDF_ECOLI -             77    0.0072   15.8   0.0   1   2   3.5e-06     0.026   14.1   0.0     2    34    10    42     9    45 0.93 Uncharacterized conserved protein (DUF2249)
Porin_1              PF00267.16   337 sp|P76335|YEDS_ECOLI -            397  3.7e-148  493.2  24.4   1   1  5.7e-152  4.2e-148  493.1  24.4     1   337    27   397    27   397 0.99 Gram-negative porin
Porin_4              PF13609.1    311 sp|P76335|YEDS_ECOLI -            397   1.9e-21   76.9  37.7   1   1     4e-25     3e-21   76.2  37.7     6   304    12   367     6   376 0.80 Gram-negative porin
Oxidored_molyb       PF00174.14   169 sp|P76342|YEDY_ECOLI -            334     9e-41  139.0   0.0   1   1   9.6e-45   1.4e-40  138.4   0.0    11   168   108   268    97   269 0.94 Oxidoreductase molybdopterin binding domain
Ferric_reduct        PF01794.14   125 sp|P76343|YEDZ_ECOLI -            211   3.3e-13   49.8  11.0   1   2   4.4e-17   3.3e-13   49.8  11.0     5   124    51   161    18   162 0.90 Ferric reductase like transmembrane component
Sulf_transp          PF04143.9     43 sp|P33015|YEEE_ECOLI -            352   1.1e-17   63.8  36.8   1   2   8.7e-15   3.2e-11   43.0  12.3     1    41    74   114    74   116 0.96 Sulphur transport
Sulf_transp          PF04143.9     43 sp|P33015|YEEE_ECOLI -            352   1.1e-17   63.8  36.8   2   2   4.4e-12   1.6e-08   34.3  16.5     2    43   283   325   282   325 0.97 Sulphur transport
COX2-transmemb       PF09125.5     38 sp|P33015|YEEE_ECOLI -            352      0.34   10.4   1.9   1   1   0.00015      0.55    9.8   0.3    11    35   193   217   189   221 0.89 Cytochrome C oxidase subunit II, transmembrane
DUF373               PF04123.8    344 sp|P33015|YEEE_ECOLI -            352       5.7    5.8  11.9   1   2     6e-05      0.22   10.4   4.1   174   281    55   167    36   181 0.78 Domain of unknown function (DUF373)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2   2  16   4.2e-06    0.0078   16.1   0.3    21    81   648   709   629   722 0.76 Bacterial Ig-like domain (group 1)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2   3  16   6.9e-21   1.3e-17   63.5  12.7     2    94   740   828   735   834 0.88 Bacterial Ig-like domain (group 1)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2   4  16   4.6e-25   8.5e-22   76.9  11.6     3    99   836   930   833   931 0.93 Bacterial Ig-like domain (group 1)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2   5  16   4.8e-28   8.8e-25   86.5   2.8     2    98   933  1031   932  1033 0.95 Bacterial Ig-like domain (group 1)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2   6  16   1.9e-27   3.5e-24   84.6  10.1     4   100  1045  1137  1042  1137 0.94 Bacterial Ig-like domain (group 1)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2   7  16   1.8e-22   3.3e-19   68.6  10.6     4   100  1143  1237  1140  1237 0.84 Bacterial Ig-like domain (group 1)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2   8  16   3.5e-27   6.5e-24   83.7   9.2     2   100  1248  1350  1247  1350 0.93 Bacterial Ig-like domain (group 1)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2   9  16   4.1e-24   7.5e-21   73.9   4.8     2    98  1352  1448  1351  1450 0.90 Bacterial Ig-like domain (group 1)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2  10  16   7.6e-30   1.4e-26   92.2   9.8     6    99  1456  1552  1452  1553 0.94 Bacterial Ig-like domain (group 1)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2  11  16     2e-28   3.6e-25   87.7   9.0     2    99  1555  1654  1554  1655 0.95 Bacterial Ig-like domain (group 1)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2  12  16   1.5e-24   2.8e-21   75.3   5.6     7    97  1667  1751  1659  1754 0.92 Bacterial Ig-like domain (group 1)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2  13  16   2.8e-24   5.2e-21   74.4   3.1     8    96  1764  1851  1758  1854 0.87 Bacterial Ig-like domain (group 1)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2  14  16   7.9e-24   1.5e-20   72.9   7.7     5   100  1862  1950  1856  1950 0.90 Bacterial Ig-like domain (group 1)
Big_1                PF02369.11   100 sp|P76347|YEEJ_ECOLI -           2358  1.8e-293  948.6 222.2  15  16   3.6e-22   6.7e-19   67.6  12.1     3   100  1955  2053  1953  2053 0.94 Bacterial Ig-like domain (group 1)
DUF3442              PF11924.3    280 sp|P76347|YEEJ_ECOLI -           2358  1.6e-100  336.3   3.1   1   1  8.7e-104  1.6e-100  336.3   3.1     3   280   141   419   139   419 0.99 Protein of unknown function (DUF3442)
CarboxypepD_reg      PF13620.1     82 sp|P76347|YEEJ_ECOLI -           2358   1.9e-19   69.4 131.1   4  13   7.6e-06     0.014   15.4   2.3     1    75  1062  1145  1062  1152 0.75 Carboxypeptidase regulatory-like domain
CarboxypepD_reg      PF13620.1     82 sp|P76347|YEEJ_ECOLI -           2358   1.9e-19   69.4 131.1   6  13   3.6e-05     0.067   13.2   4.1     2    45  1271  1318  1270  1361 0.68 Carboxypeptidase regulatory-like domain
CarboxypepD_reg      PF13620.1     82 sp|P76347|YEEJ_ECOLI -           2358   1.9e-19   69.4 131.1   7  13   1.2e-05     0.023   14.7   2.1     5    81  1380  1461  1376  1462 0.70 Carboxypeptidase regulatory-like domain
CarboxypepD_reg      PF13620.1     82 sp|P76347|YEEJ_ECOLI -           2358   1.9e-19   69.4 131.1   8  13   2.6e-06    0.0047   16.9   3.9     1    69  1477  1553  1477  1567 0.70 Carboxypeptidase regulatory-like domain
CarboxypepD_reg      PF13620.1     82 sp|P76347|YEEJ_ECOLI -           2358   1.9e-19   69.4 131.1   9  13   2.9e-07   0.00054   19.9   3.5     2    73  1581  1661  1580  1670 0.79 Carboxypeptidase regulatory-like domain
CarboxypepD_reg      PF13620.1     82 sp|P76347|YEEJ_ECOLI -           2358   1.9e-19   69.4 131.1  10  13   6.7e-05      0.12   12.4   1.2     2    45  1685  1728  1684  1769 0.73 Carboxypeptidase regulatory-like domain
CarboxypepD_reg      PF13620.1     82 sp|P76347|YEEJ_ECOLI -           2358   1.9e-19   69.4 131.1  11  13   2.2e-05     0.041   13.9   0.1     2    67  1783  1853  1782  1867 0.82 Carboxypeptidase regulatory-like domain
CarboxypepD_reg      PF13620.1     82 sp|P76347|YEEJ_ECOLI -           2358   1.9e-19   69.4 131.1  13  13   0.00025      0.47   10.5   5.1     1    73  1980  2056  1980  2065 0.68 Carboxypeptidase regulatory-like domain
Filamin              PF00630.14   101 sp|P76347|YEEJ_ECOLI -           2358   3.3e-15   56.5  28.9   2   9   1.8e-05     0.033   14.7   0.1    19    82   648   708   631   719 0.85 Filamin/ABP280 repeat
Filamin              PF00630.14   101 sp|P76347|YEEJ_ECOLI -           2358   3.3e-15   56.5  28.9   6   9   1.1e-07    0.0002   21.8   0.1    15    92  1367  1440  1349  1449 0.80 Filamin/ABP280 repeat
Filamin              PF00630.14   101 sp|P76347|YEEJ_ECOLI -           2358   3.3e-15   56.5  28.9   8   9   4.9e-05     0.091   13.3   0.4    24    92  1684  1845  1670  1852 0.56 Filamin/ABP280 repeat
DUF824               PF05688.6     47 sp|P76347|YEEJ_ECOLI -           2358   6.9e-13   48.0  48.7   3  13   3.7e-05     0.069   12.8   0.8     5    37   849   881   845   887 0.81 Salmonella repeat of unknown function (DUF824)
DUF824               PF05688.6     47 sp|P76347|YEEJ_ECOLI -           2358   6.9e-13   48.0  48.7   8  13    0.0004      0.75    9.4   0.0     9    37  1369  1397  1366  1401 0.92 Salmonella repeat of unknown function (DUF824)
DUF824               PF05688.6     47 sp|P76347|YEEJ_ECOLI -           2358   6.9e-13   48.0  48.7  10  13     5e-05     0.093   12.3   0.2    17    37  1581  1601  1578  1604 0.88 Salmonella repeat of unknown function (DUF824)
DUF824               PF05688.6     47 sp|P76347|YEEJ_ECOLI -           2358   6.9e-13   48.0  48.7  11  13   2.4e-05     0.045   13.3   0.3    12    36  1680  1704  1671  1709 0.85 Salmonella repeat of unknown function (DUF824)
YtkA                 PF13115.1     86 sp|P76347|YEEJ_ECOLI -           2358   0.00021   21.5  59.5   8  13   0.00021      0.39   11.1   0.0    16    85  1368  1436  1352  1437 0.85 YtkA-like
Intimin_C            PF07979.6    101 sp|P76347|YEEJ_ECOLI -           2358    0.0034   17.5   1.7   1   1   1.1e-05      0.02   15.0   1.7    11    99  2264  2354  2255  2356 0.73 Intimin C-type lectin domain
Transthyretin        PF00576.16   112 sp|P76347|YEEJ_ECOLI -           2358      0.83    9.5  18.6   2   6    0.0003      0.56   10.1   0.2     3    59  1271  1327  1269  1330 0.82 HIUase/Transthyretin family
MatE                 PF01554.13   162 sp|P76352|YEEO_ECOLI -            495     4e-66  221.6  36.1   1   3   2.1e-38   3.1e-34  117.9   9.5     1   160    48   208    48   210 0.97 MatE
MatE                 PF01554.13   162 sp|P76352|YEEO_ECOLI -            495     4e-66  221.6  36.1   2   3   2.5e-37   3.8e-33  114.4  13.0     1   162   278   439   278   439 1.00 MatE
DUF987               PF06174.6     66 sp|P64521|YEET_ECOLI -             73   4.9e-43  144.4   0.1   1   1   3.7e-47   5.5e-43  144.3   0.1     1    66     1    66     1    66 0.99 Protein of unknown function (DUF987)
RadC                 PF04002.10   123 sp|P76362|YEES_ECOLI -            148   4.6e-47  158.7   0.0   1   1   1.6e-50   5.8e-47  158.4   0.0     2   123    27   148    26   148 0.98 RadC-like JAB domain
Prok-JAB             PF14464.1    105 sp|P76362|YEES_ECOLI -            148   8.3e-05   22.1   0.0   1   1   2.6e-08   9.5e-05   21.9   0.0    36    96    68   137    17   145 0.74 Prokaryotic homologs of the JAB domain
Toxin-JAB1           PF15659.1    162 sp|P76362|YEES_ECOLI -            148     0.064   13.1   0.0   1   1   2.6e-05     0.096   12.5   0.0    99   138    73   113    62   124 0.76 JAB-like toxin  1
Malic_M              PF03949.10   255 sp|P76362|YEES_ECOLI -            148      0.13   11.7   0.0   1   1   3.9e-05      0.14   11.6   0.0   101   175    60   128    33   143 0.84 Malic enzyme, NAD binding domain
Transcrip_reg        PF01709.15   234 sp|P0A8A2|YEEN_ECOLI -            238   1.1e-82  276.7   0.8   1   1   1.6e-86   1.2e-82  276.5   0.8     1   233     3   235     3   236 0.98 Transcriptional regulator
YscJ_FliF            PF01514.12   207 sp|P0A8A2|YEEN_ECOLI -            238     0.089   11.9   0.0   1   1     2e-05      0.15   11.1   0.0    40   105   144   209   139   223 0.89 Secretory protein of YscJ/FliF family
TusA                 PF01206.12    70 sp|P33014|YEED_ECOLI -             75   2.5e-18   65.4   0.0   1   1   1.9e-22   2.8e-18   65.2   0.0     1    70     4    74     4    74 0.97 Sulfurtransferase TusA
DUF496               PF04363.7     95 sp|P0A8M6|YEEX_ECOLI -            109     2e-46  155.7   6.3   1   1   6.3e-50   2.3e-46  155.5   6.3     1    93     8   100     8   102 0.98 Protein of unknown function (DUF496)
IncA                 PF04156.9    191 sp|P0A8M6|YEEX_ECOLI -            109    0.0035   16.9   0.2   1   1   1.1e-06    0.0042   16.7   0.2    82   152    13    96     3   106 0.88 IncA protein
FbpA                 PF05833.6    455 sp|P0A8M6|YEEX_ECOLI -            109    0.0036   15.9   0.3   1   1     1e-06    0.0038   15.8   0.3   384   434    16    66     6   104 0.90 Fibronectin-binding protein A N-terminus (FbpA)
PhdYeFM_antitox      PF02604.14    75 sp|P69346|YEFM_ECOLI -             83   6.2e-25   86.5   0.1   1   1   1.4e-28   7.1e-25   86.3   0.1     1    74     1    73     1    74 0.97 Antitoxin Phd_YefM, type II toxin-antitoxin system
RelB_N               PF12910.2     46 sp|P69346|YEFM_ECOLI -             83   2.8e-21   74.5   0.1   1   1     8e-25     4e-21   74.1   0.1     1    46     1    46     1    46 0.99 Antitoxin of toxin-antitoxin stability system N-terminal
YojJ                 PF10372.4     70 sp|P69346|YEFM_ECOLI -             83     0.045   13.6   0.1   1   1   1.2e-05      0.06   13.2   0.1     1    48     1    46     1    55 0.85 Bacterial membrane-spanning protein N-terminus
HSP70                PF00012.15   602 sp|P36928|YEGD_ECOLI -            450     3e-24   84.9   0.0   1   2   1.2e-17   2.2e-14   52.3   0.0     2   207     3   228     2   259 0.76 Hsp70 protein
HSP70                PF00012.15   602 sp|P36928|YEGD_ECOLI -            450     3e-24   84.9   0.0   2   2   1.3e-10   2.3e-07   29.1   0.0   250   352   329   423   305   448 0.80 Hsp70 protein
MreB_Mbl             PF06723.8    327 sp|P36928|YEGD_ECOLI -            450   1.9e-09   36.6   0.1   2   3   7.9e-10   1.5e-06   27.0   0.0    80   165   136   229   121   257 0.76 MreB/Mbl protein
StbA                 PF06406.6    318 sp|P36928|YEGD_ECOLI -            450   0.00092   18.2   0.0   1   2     1e-05     0.019   13.9   0.0   141   181   186   226   110   230 0.89 StbA protein
Hydantoinase_A       PF01968.13   290 sp|P36928|YEGD_ECOLI -            450     0.003   16.6   0.0   1   1   5.9e-06     0.011   14.8   0.0    63    97   196   229   194   239 0.85 Hydantoinase/oxoprolinase
Ppx-GppA             PF02541.11   285 sp|P36928|YEGD_ECOLI -            450     0.024   13.8   0.1   1   1   2.6e-05     0.048   12.8   0.1   107   128   204   225   196   229 0.88 Ppx/GppA phosphatase family
EutA                 PF06277.6    473 sp|P36928|YEGD_ECOLI -            450     0.058   11.9   0.0   1   1   7.3e-05      0.13   10.7   0.0   139   163   205   229   196   235 0.85 Ethanolamine utilisation protein EutA
MutL                 PF13941.1    457 sp|P36928|YEGD_ECOLI -            450       0.1   10.9   0.0   1   2   0.00015      0.28    9.4   0.0   244   265   206   226   186   241 0.79 MutL protein
FGGY_C               PF02782.11   198 sp|P36928|YEGD_ECOLI -            450      0.11   12.0   0.0   2   2   0.00022      0.41   10.2   0.0   140   177   391   428   371   447 0.76 FGGY family of carbohydrate kinases, C-terminal domain
TerC                 PF03741.11   184 sp|P76389|YEGH_ECOLI -            527   5.3e-49  166.1  13.4   1   1   2.1e-52   7.7e-49  165.6  13.4     1   183    14   203    14   204 0.94 Integral membrane protein TerC family
CorC_HlyC            PF03471.12    81 sp|P76389|YEGH_ECOLI -            527   1.1e-20   73.2   0.1   2   2   3.7e-23   1.4e-19   69.6   0.0     2    79   440   516   439   518 0.93 Transporter associated domain
CBS                  PF00571.23    57 sp|P76389|YEGH_ECOLI -            527   3.6e-16   58.6   0.8   1   2   5.9e-09   2.2e-05   24.1   0.4     1    54   302   359   302   362 0.94 CBS domain
CBS                  PF00571.23    57 sp|P76389|YEGH_ECOLI -            527   3.6e-16   58.6   0.8   2   2   1.5e-11   5.6e-08   32.4   0.0     4    54   370   420   368   423 0.92 CBS domain
DUF1129              PF06570.6    206 sp|P76389|YEGH_ECOLI -            527      0.34   10.1   5.6   1   2   0.00012      0.46    9.7   0.5   111   171    11    73     1    79 0.79 Protein of unknown function (DUF1129)
DUF1508              PF07411.7     49 sp|P76402|YEGP_ECOLI -            110   7.7e-48  159.7   5.4   1   2   3.9e-27   2.9e-23   81.0   0.1     1    49    10    58    10    58 0.97 Domain of unknown function (DUF1508)
DUF1508              PF07411.7     49 sp|P76402|YEGP_ECOLI -            110   7.7e-48  159.7   5.4   2   2   3.8e-27   2.8e-23   81.0   1.3     1    48    61   108    61   109 0.97 Domain of unknown function (DUF1508)
CarboxypepD_reg      PF13620.1     82 sp|P76402|YEGP_ECOLI -            110    0.0034   17.4   0.3   2   2   1.1e-06    0.0084   16.1   0.2    23    67    49    92    34   108 0.80 Carboxypeptidase regulatory-like domain
Peptidase_U32        PF01136.14   233 sp|P76403|YEGQ_ECOLI -            453   7.6e-95  316.2   0.0   1   1     2e-98   9.9e-95  315.8   0.0     1   232    75   344    75   345 0.98 Peptidase family U32
Tachystatin_B        PF11478.3     42 sp|P76403|YEGQ_ECOLI -            453      0.23   11.2   3.8   1   2   2.4e-05      0.12   12.1   0.6     6    29   165   188   161   198 0.81 Antimicrobial chitin binding protein tachystatin B
DAGK_cat             PF00781.19   130 sp|P76407|YEGS_ECOLI -            299   1.4e-26   92.4   0.2   1   1     3e-30   2.2e-26   91.8   0.2     3   129     8   131     6   132 0.96 Diacylglycerol kinase catalytic domain
NAD_kinase           PF01513.16   285 sp|P76407|YEGS_ECOLI -            299   1.1e-05   24.3   0.1   1   1   1.8e-09   1.3e-05   24.0   0.1    64   136    45   124    12   198 0.81 ATP-NAD kinase
ADP_ribosyl_GH       PF03747.9    289 sp|P76418|YEGU_ECOLI -            334   2.4e-62  211.3   2.0   1   1   1.9e-66   2.8e-62  211.1   2.0     1   287     8   303     8   305 0.95 ADP-ribosylglycohydrolase
PfkB                 PF00294.19   301 sp|P76419|YEGV_ECOLI -            321     7e-52  176.4   0.0   1   1   5.7e-56   8.4e-52  176.1   0.0     2   294    17   305    16   311 0.90 pfkB family carbohydrate kinase
Glyco_hydro_25       PF01183.15   181 sp|P76421|YEGX_ECOLI -            272   3.6e-52  176.7   0.3   1   1   3.4e-56     5e-52  176.3   0.3     1   181    70   245    70   245 0.96 Glycosyl hydrolases family 25
Usher                PF00577.15   552 sp|P33341|YEHB_ECOLI -            826  2.3e-183  610.8  27.8   1   1  5.9e-187  2.9e-183  610.5  27.8     1   552   177   743   177   743 0.98 Outer membrane usher protein
PapC_N               PF13954.1    146 sp|P33341|YEHB_ECOLI -            826   9.5e-34  116.0   0.1   1   1   3.8e-37   1.9e-33  115.1   0.1     2   145    26   162    25   163 0.92 PapC N-terminal domain
PapC_C               PF13953.1     68 sp|P33341|YEHB_ECOLI -            826   8.7e-09   34.8   0.0   1   1     7e-12   3.5e-08   32.9   0.0     4    61   756   813   753   820 0.93 PapC C-terminal domain
Fimbrial             PF00419.15   145 sp|P33340|YEHA_ECOLI -            344   1.5e-13   51.1   6.5   2   2     1e-17   1.5e-13   51.1   6.5     2   145   182   344   181   344 0.82 Fimbrial protein
PapD_N               PF00345.15   122 sp|P33342|YEHC_ECOLI -            239   2.6e-39  133.7   0.9   1   2   1.2e-42   9.1e-39  132.0   0.1     1   121    34   156    34   157 0.94 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_C               PF02753.12    68 sp|P33342|YEHC_ECOLI -            239   1.4e-11   44.0   1.7   1   1   4.9e-15   3.6e-11   42.7   1.7     1    65   176   236   176   239 0.94 Pili assembly chaperone PapD, C-terminal domain
ABC_tran             PF00005.22   137 sp|P33360|YEHX_ECOLI -            308   4.2e-31  108.0   0.0   1   1   7.3e-34   6.4e-31  107.4   0.0     2   136    18   162    17   163 0.93 ABC transporter
AAA_21               PF13304.1    303 sp|P33360|YEHX_ECOLI -            308   5.4e-10   39.7   0.0   1   2   1.7e-05     0.015   15.3   0.1     1    24    29    52    29    82 0.77 AAA domain
AAA_21               PF13304.1    303 sp|P33360|YEHX_ECOLI -            308   5.4e-10   39.7   0.0   2   2   9.4e-08   8.2e-05   22.7   0.0   182   298    97   194    65   199 0.82 AAA domain
CBS                  PF00571.23    57 sp|P33360|YEHX_ECOLI -            308   2.3e-05   24.0   0.0   1   1   8.1e-08     7e-05   22.5   0.0    12    52   265   305   250   307 0.93 CBS domain
AAA_16               PF13191.1    185 sp|P33360|YEHX_ECOLI -            308   0.00021   21.3   2.1   1   1   1.5e-06    0.0013   18.7   2.1    16   168    24   204     9   223 0.46 AAA ATPase domain
DUF258               PF03193.11   161 sp|P33360|YEHX_ECOLI -            308   0.00058   19.0   0.1   1   1   1.1e-06   0.00092   18.4   0.1    22    67    13    59     2    66 0.81 Protein of unknown function, DUF258
AAA_30               PF13604.1    196 sp|P33360|YEHX_ECOLI -            308    0.0011   18.6   0.0   1   1   2.7e-06    0.0024   17.4   0.0    17    57    26    66    14   117 0.80 AAA domain
AAA_29               PF13555.1     62 sp|P33360|YEHX_ECOLI -            308    0.0013   18.2   0.0   1   1   2.9e-06    0.0026   17.2   0.0    19    41    24    45    16    61 0.78 P-loop containing region of AAA domain
AAA_10               PF12846.2    304 sp|P33360|YEHX_ECOLI -            308    0.0019   17.7   0.4   1   3     5e-05     0.044   13.2   0.1     5    23    31    49    28    60 0.86 AAA-like domain
AAA_15               PF13175.1    415 sp|P33360|YEHX_ECOLI -            308    0.0042   16.1   0.0   1   2   2.3e-05      0.02   13.9   0.0    10    44    15    49    12    81 0.83 AAA ATPase domain
G-alpha              PF00503.15   389 sp|P33360|YEHX_ECOLI -            308     0.008   14.9   0.0   1   1   1.3e-05     0.011   14.4   0.0    62    85    31    54    14    73 0.89 G-protein alpha subunit
AAA_19               PF13245.1     76 sp|P33360|YEHX_ECOLI -            308    0.0085   15.8   0.0   1   1   6.3e-05     0.055   13.2   0.0    10    37    27    53    16    67 0.85 Part of AAA domain
AAA_17               PF13207.1    121 sp|P33360|YEHX_ECOLI -            308     0.013   16.3   0.3   1   1     3e-05     0.026   15.3   0.3     4    32    32    57    31   263 0.83 AAA domain
AAA_22               PF13401.1    131 sp|P33360|YEHX_ECOLI -            308     0.015   15.4   0.4   1   1   3.4e-05      0.03   14.4   0.2     3    27    26    50    24   160 0.89 AAA domain
SMC_N                PF02463.14   220 sp|P33360|YEHX_ECOLI -            308     0.016   14.4   0.2   1   1   0.00051      0.44    9.7   0.2    21    44    23    47    13   210 0.87 RecF/RecN/SMC N terminal domain
Zeta_toxin           PF06414.7    201 sp|P33360|YEHX_ECOLI -            308      0.11   11.6   0.0   1   1   0.00025      0.22   10.5   0.0    20    55    31    67    16    80 0.89 Zeta toxin
AAA_23               PF13476.1    202 sp|P33360|YEHX_ECOLI -            308      0.12   12.6   0.1   1   1   0.00025      0.22   11.8   0.1    11    40    18    48    11    67 0.85 AAA domain
AAA_25               PF13481.1    194 sp|P33360|YEHX_ECOLI -            308      0.13   11.6   0.9   1   1   0.00056      0.49    9.7   0.0    31    50    25    44     8    49 0.88 AAA domain
BPD_transp_1         PF00528.17   185 sp|P33359|YEHW_ECOLI -            243     2e-22   79.6  16.0   2   2   2.6e-26     2e-22   79.6  16.0     1   183    68   238    64   240 0.94 Binding-protein-dependent transport system inner membrane component
Ldr_toxin            PF13940.1     35 sp|P33359|YEHW_ECOLI -            243       1.1    9.0   5.3   1   2   8.7e-05      0.64    9.8   1.3    14    29   166   182   165   183 0.88 Toxin Ldr, type I toxin-antitoxin system
Fimbrial             PF00419.15   145 sp|P33343|YEHD_ECOLI -            180   2.9e-13   50.2   0.5   1   1   4.9e-17   3.7e-13   49.9   0.5     2   143    31   178    30   180 0.79 Fimbrial protein
DUF2574              PF10836.3     93 sp|P33343|YEHD_ECOLI -            180   6.3e-05   22.6   0.3   1   2     2e-08   0.00015   21.4   0.2     1    42     1    44     1    83 0.90 Protein of unknown function (DUF2574)
BPD_transp_1         PF00528.17   185 sp|P33361|YEHY_ECOLI -            385   7.2e-21   74.5  24.5   3   3   4.9e-25   7.2e-21   74.5  24.5     1   179   195   375   191   381 0.92 Binding-protein-dependent transport system inner membrane component
Cons_hypoth698       PF03601.9    305 sp|P62723|YEIH_ECOLI -            349  4.2e-117  390.1  25.3   1   1  6.5e-121  4.8e-117  389.9  25.3     1   305    18   326    18   326 0.98 Conserved hypothetical protein 698
Asp-Al_Ex            PF06826.7    169 sp|P62723|YEIH_ECOLI -            349       1.1    8.7  31.0   1   2   3.8e-05      0.28   10.6  16.1     4   167    25   185    21   187 0.83 Predicted Permease Membrane Region
Mannitol_dh_C        PF08125.8    245 sp|P33029|YEIQ_ECOLI -            488   1.8e-96  322.0   0.0   1   1  3.4e-100   2.5e-96  321.5   0.0     1   245   216   462   216   462 0.99 Mannitol dehydrogenase C-terminal domain
Mannitol_dh          PF01232.18   151 sp|P33029|YEIQ_ECOLI -            488   6.2e-54  182.0   0.0   1   1   1.9e-57   1.4e-53  180.8   0.0     2   151    26   188    25   188 0.99 Mannitol dehydrogenase Rossmann domain
cobW                 PF02492.14   178 sp|P33030|YEIR_ECOLI -            328   2.7e-35  121.4   0.0   1   1   9.9e-39   3.7e-35  120.9   0.0     4   168     6   170     3   180 0.91 CobW/HypB/UreG, nucleotide-binding domain
CobW_C               PF07683.9     94 sp|P33030|YEIR_ECOLI -            328   2.2e-06   27.2   0.4   1   1   1.3e-09   4.8e-06   26.2   0.0     2    92   241   321   240   323 0.90 Cobalamin synthesis protein cobW C-terminal domain
T2SE                 PF00437.15   272 sp|P33030|YEIR_ECOLI -            328     0.055   12.3   0.0   1   1   2.5e-05     0.093   11.6   0.0   132   204     6    90     2    92 0.87 Type II/IV secretion system protein
Viral_helicase1      PF01443.13   234 sp|P33030|YEIR_ECOLI -            328      0.15   11.5   0.0   1   1   6.1e-05      0.23   10.9   0.0     2    21     6    25     5    43 0.82 Viral (Superfamily 1) RNA helicase
PfkB                 PF00294.19   301 sp|P33020|YEII_ECOLI -            362   2.9e-59  200.6   0.0   1   1   3.5e-62   3.7e-59  200.3   0.0     2   293    58   344    57   352 0.92 pfkB family carbohydrate kinase
HTH_24               PF13412.1     48 sp|P33020|YEII_ECOLI -            362   4.7e-09   35.4   1.6   1   1   8.6e-12   9.1e-09   34.5   1.6     1    48     1    48     1    48 0.97 Winged helix-turn-helix DNA-binding
HTH_11               PF08279.7     55 sp|P33020|YEII_ECOLI -            362   7.7e-05   22.2   0.4   1   1   1.5e-07   0.00016   21.2   0.4     1    49     4    50     4    53 0.85 HTH domain
MarR_2               PF12802.2     62 sp|P33020|YEII_ECOLI -            362   0.00017   21.1   0.0   1   1   3.3e-07   0.00035   20.1   0.0     9    49     7    45     1    56 0.90 MarR family
HTH_AsnC-type        PF13404.1     42 sp|P33020|YEII_ECOLI -            362    0.0026   17.2   0.3   1   1   5.8e-06    0.0062   16.0   0.3     7    36     7    36     6    41 0.93 AsnC-type helix-turn-helix domain
HTH_Crp_2            PF13545.1     76 sp|P33020|YEII_ECOLI -            362     0.003   17.3   0.6   1   1   9.5e-06      0.01   15.6   0.2    29    59    18    48    11    58 0.88 Crp-like helix-turn-helix domain
MarR                 PF01047.17    59 sp|P33020|YEII_ECOLI -            362    0.0033   17.1   0.1   1   1   6.5e-06    0.0069   16.0   0.1     4    47     4    47     1    48 0.90 MarR family
Sigma70_r4           PF04545.11    50 sp|P33020|YEII_ECOLI -            362    0.0068   15.6   0.1   1   1   1.4e-05     0.014   14.6   0.1     6    38     2    35     1    44 0.80 Sigma-70, region 4
TrmB                 PF01978.14    68 sp|P33020|YEII_ECOLI -            362     0.017   14.8   0.0   1   1   3.1e-05     0.033   13.8   0.0    10    53     5    48     1    60 0.83 Sugar-specific transcriptional regulator TrmB
PCI                  PF01399.22   105 sp|P33020|YEII_ECOLI -            362     0.026   14.8   0.0   1   1   5.5e-05     0.058   13.7   0.0    64    93    21    50     4    64 0.86 PCI domain
FeoC                 PF09012.5     69 sp|P33020|YEII_ECOLI -            362     0.038   13.6   0.1   1   1   6.7e-05     0.071   12.8   0.1     3    45     6    48     6    52 0.94 FeoC like transcriptional regulator
HTH_39               PF14090.1     70 sp|P33020|YEII_ECOLI -            362      0.04   13.3   0.3   1   1   8.1e-05     0.085   12.3   0.3     3    41     5    45     3    53 0.93 Helix-turn-helix domain
GerE                 PF00196.14    58 sp|P33020|YEII_ECOLI -            362     0.044   13.1   0.3   1   1   0.00011      0.12   11.7   0.3    20    45    19    44     1    50 0.79 Bacterial regulatory proteins, luxR family
Arg_repressor        PF01316.16    70 sp|P33020|YEII_ECOLI -            362      0.12   11.9   0.3   1   1   0.00029      0.31   10.6   0.3     5    30     3    28     1    35 0.93 Arginine repressor, DNA binding domain
BPD_transp_1         PF00528.17   185 sp|P0AFU0|YEJB_ECOLI -            364   4.3e-41  140.4  14.1   2   2   8.7e-45   4.3e-41  140.4  14.1     2   183   152   359   151   361 0.99 Binding-protein-dependent transport system inner membrane component
7tm_2                PF00002.19   243 sp|P0AFU0|YEJB_ECOLI -            364     0.015   14.3   1.7   1   1   6.6e-06     0.033   13.2   1.7   114   221   171   301   159   315 0.69 7 transmembrane receptor (Secretin family)
DUF3733              PF12534.3     65 sp|P0AFU0|YEJB_ECOLI -            364     0.096   11.9   0.2   1   1   1.9e-05     0.096   11.9   0.2    21    50   215   249   213   253 0.72 Leucine-rich repeat containing protein 8
BPD_transp_1         PF00528.17   185 sp|P33915|YEJE_ECOLI -            341     2e-28   99.1  11.6   1   1     7e-32   3.5e-28   98.3  11.6     1   182   158   338   154   341 0.89 Binding-protein-dependent transport system inner membrane component
OppC_N               PF12911.2     56 sp|P33915|YEJE_ECOLI -            341   0.00075   18.8   0.0   1   3   1.5e-07   0.00075   18.8   0.0     9    40    12    43     5    65 0.89 N-terminal TM domain of oligopeptide transport permease C
SieB                 PF14163.1    151 sp|P33915|YEJE_ECOLI -            341      0.12   11.9   0.0   1   1     6e-05      0.29   10.6   0.0    29    55   302   328   281   338 0.83 Superinfection exclusion protein B
CxxCxxCC             PF03692.10    85 sp|P0AFT8|YEIW_ECOLI -             84   8.2e-07   29.4   5.2   1   1   1.6e-10   2.4e-06   27.9   5.2     1    72     2    60     2    76 0.86 Putative zinc- or iron-chelating domain
ABC_tran             PF00005.22   137 sp|P33916|YEJF_ECOLI -            529   1.3e-61  206.8   0.1   1   2     7e-30   2.9e-27   95.6   0.0     2   136    26   184    25   185 0.89 ABC transporter
ABC_tran             PF00005.22   137 sp|P33916|YEJF_ECOLI -            529   1.3e-61  206.8   0.1   2   2   4.4e-34   1.8e-31  109.2   0.0     1   137   302   454   302   454 0.93 ABC transporter
AAA_21               PF13304.1    303 sp|P33916|YEJF_ECOLI -            529   8.6e-22   78.4   4.8   2   4   6.7e-10   2.8e-07   30.8   0.0   233   302   153   220   148   221 0.95 AAA domain
AAA_21               PF13304.1    303 sp|P33916|YEJF_ECOLI -            529   8.6e-22   78.4   4.8   3   4    0.0016      0.67    9.8   0.1     3    82   316   384   315   396 0.73 AAA domain
AAA_21               PF13304.1    303 sp|P33916|YEJF_ECOLI -            529   8.6e-22   78.4   4.8   4   4   9.5e-11   3.9e-08   33.5   0.2   230   302   419   489   412   490 0.90 AAA domain
SMC_N                PF02463.14   220 sp|P33916|YEJF_ECOLI -            529   1.9e-12   46.8   0.1   1   2     3e-07   0.00012   21.3   0.0    26   214    37   232    19   238 0.78 RecF/RecN/SMC N terminal domain
SMC_N                PF02463.14   220 sp|P33916|YEJF_ECOLI -            529   1.9e-12   46.8   0.1   2   2   1.4e-07     6e-05   22.3   0.0    28   203   316   490   301   505 0.81 RecF/RecN/SMC N terminal domain
oligo_HPY            PF08352.7     64 sp|P33916|YEJF_ECOLI -            529     5e-12   45.9   0.1   1   2   1.5e-09   6.1e-07   29.7   0.1     1    32   236   267   236   280 0.90 Oligopeptide/dipeptide transporter, C-terminal region
oligo_HPY            PF08352.7     64 sp|P33916|YEJF_ECOLI -            529     5e-12   45.9   0.1   2   2   0.00013     0.054   13.8   0.0     1    23   505   527   505   529 0.96 Oligopeptide/dipeptide transporter, C-terminal region
AAA_16               PF13191.1    185 sp|P33916|YEJF_ECOLI -            529   6.3e-08   32.8   6.1   1   2   0.00019      0.08   12.9   0.5    22    61    33    72    16   213 0.64 AAA ATPase domain
AAA_16               PF13191.1    185 sp|P33916|YEJF_ECOLI -            529   6.3e-08   32.8   6.1   2   2   3.5e-07   0.00014   21.8   0.6    24   182   312   480   301   483 0.56 AAA ATPase domain
AAA_22               PF13401.1    131 sp|P33916|YEJF_ECOLI -            529   9.9e-08   32.1   4.7   1   2   4.9e-05      0.02   15.0   0.4     6   126    37   218    32   223 0.58 AAA domain
AAA_22               PF13401.1    131 sp|P33916|YEJF_ECOLI -            529   9.9e-08   32.1   4.7   2   2   7.7e-05     0.032   14.3   0.4     9   123   317   483   311   492 0.72 AAA domain
AAA_29               PF13555.1     62 sp|P33916|YEJF_ECOLI -            529   1.3e-07   31.0   0.8   1   2   6.9e-05     0.028   13.9   0.0    17    45    30    57    23    66 0.74 P-loop containing region of AAA domain
AAA_29               PF13555.1     62 sp|P33916|YEJF_ECOLI -            529   1.3e-07   31.0   0.8   2   2   3.1e-05     0.013   15.0   0.3    22    47   311   336   299   346 0.75 P-loop containing region of AAA domain
AAA_10               PF12846.2    304 sp|P33916|YEJF_ECOLI -            529   3.8e-07   29.8   1.8   1   4   0.00036      0.15   11.4   0.0     4    66    38   108    35   155 0.68 AAA-like domain
SbcCD_C              PF13558.1     90 sp|P33916|YEJF_ECOLI -            529   7.8e-06   25.7   0.2   2   2   0.00035      0.15   12.0   0.0    63    89   443   469   404   470 0.82 Putative exonuclease SbcCD, C subunit
AAA_25               PF13481.1    194 sp|P33916|YEJF_ECOLI -            529   1.9e-05   24.1   0.7   1   2    0.0009      0.37   10.1   0.0    30    54    32    56    13    59 0.86 AAA domain
AAA_25               PF13481.1    194 sp|P33916|YEJF_ECOLI -            529   1.9e-05   24.1   0.7   2   2   0.00039      0.16   11.3   0.1    29    58   308   337   269   484 0.74 AAA domain
AAA_13               PF13166.1    712 sp|P33916|YEJF_ECOLI -            529   4.3e-05   22.1   0.0   2   2     1e-05    0.0043   15.5   0.1   526   575   442   490   433   496 0.89 AAA domain
AAA_5                PF07728.9    139 sp|P33916|YEJF_ECOLI -            529   4.5e-05   23.2   0.4   1   2   0.00083      0.34   10.6   0.0     3    29    39    66    37    79 0.83 AAA domain (dynein-related subfamily)
DUF87                PF01935.12   229 sp|P33916|YEJF_ECOLI -            529   0.00021   21.1   1.0   1   2   0.00099      0.41   10.4   0.0    25    47    37    59    23    67 0.85 Domain of unknown function DUF87
DUF258               PF03193.11   161 sp|P33916|YEJF_ECOLI -            529   0.00033   19.8   0.4   2   2   0.00068      0.28   10.3   0.1    19    50   295   327   281   344 0.84 Protein of unknown function, DUF258
AAA_18               PF13238.1    129 sp|P33916|YEJF_ECOLI -            529    0.0035   17.6   0.1   2   2    0.0011      0.45   10.8   0.0     3    69   317   399   316   449 0.65 AAA domain
T2SE                 PF00437.15   272 sp|P33916|YEJF_ECOLI -            529    0.0045   15.9   0.1   2   2    0.0019      0.77    8.5   0.0   121   160   309   343   270   371 0.80 Type II/IV secretion system protein
Sigma54_activat      PF00158.21   168 sp|P33916|YEJF_ECOLI -            529    0.0061   16.0   1.7   1   2    0.0011      0.47    9.8   0.0     4    44    17    57    15    81 0.85 Sigma-54 interaction domain
AIG1                 PF04548.11   212 sp|P33916|YEJF_ECOLI -            529    0.0088   15.1   4.4   1   2    0.0011      0.46    9.5   0.2     2    22    37    57    36    59 0.92 AIG1 family
Mg_chelatase         PF01078.16   207 sp|P33916|YEJF_ECOLI -            529     0.029   13.5   0.1   1   2    0.0024      0.98    8.5   0.0    22    48    35    61    19    69 0.86 Magnesium chelatase, subunit ChlI
AAA_15               PF13175.1    415 sp|P33916|YEJF_ECOLI -            529     0.048   12.7   4.6   2   2    0.0015      0.63    9.0   0.4   372   403   446   477   438   489 0.82 AAA ATPase domain
DUF1414              PF07208.6     44 sp|P0AD24|YEJL_ECOLI -             75   2.8e-25   87.7   0.9   1   1   2.5e-29   3.7e-25   87.3   0.9     1    44    26    69    26    69 0.99 Protein of unknown function (DUF1414)
Transposase_31       PF04754.7    205 sp|P37014|YFAD_ECOLI -            299   4.7e-82  274.3   0.8   1   2   3.5e-86   5.2e-82  274.1   0.1     2   204     9   209     8   210 0.99 Putative transposase, YhgA-like
A2M_N_2              PF07703.9    136 sp|P76464|YFAS_ECOLI -           1534   1.5e-22   79.8   1.0   1   1   2.1e-25   3.5e-22   78.6   0.1     2   136   661   806   660   806 0.95 Alpha-2-macroglobulin family N-terminal region
A2M_N                PF01835.14    99 sp|P76464|YFAS_ECOLI -           1534   1.9e-22   79.3   0.3   1   3   4.4e-18   7.2e-15   55.0   0.0     2    99   345   440   344   440 0.93 MG2 domain
A2M                  PF00207.17    92 sp|P76464|YFAS_ECOLI -           1534   3.1e-12   45.8   0.0   1   1   5.1e-15   8.5e-12   44.4   0.0     1    85   871   954   871   960 0.95 Alpha-2-macroglobulin family
PKD                  PF00801.15    69 sp|P76464|YFAS_ECOLI -           1534   5.5e-05   22.8   0.7   2   2   1.5e-06    0.0025   17.5   0.1    11    62   577   637   568   640 0.82 PKD domain
CarboxypepD_reg      PF13620.1     82 sp|P76464|YFAS_ECOLI -           1534   0.00058   19.8   7.8   2   4   4.1e-05     0.068   13.2   0.0     8    65   473   551   464   560 0.80 Carboxypeptidase regulatory-like domain
MG1                  PF11974.3     97 sp|P76464|YFAS_ECOLI -           1534     0.048   14.2   0.1   1   1    0.0004      0.66   10.5   0.0    24    72   475   544   460   571 0.80 Alpha-2-macroglobulin MG1 domain
CitMHS               PF03600.11   351 sp|P0AFU2|YFBS_ECOLI -            610     4e-83  278.9   3.1   1   2   3.2e-78   1.2e-74  251.0   0.0     3   351    11   558     9   558 0.98 Citrate transporter
CitMHS               PF03600.11   351 sp|P0AFU2|YFBS_ECOLI -            610     4e-83  278.9   3.1   2   2   7.3e-11   2.7e-07   29.4   7.9   105   191   521   604   520   608 0.90 Citrate transporter
TrkA_C               PF02080.16    71 sp|P0AFU2|YFBS_ECOLI -            610     5e-26   90.1   0.7   1   2   1.5e-15   5.5e-12   45.1   0.1     2    64   231   297   230   305 0.90 TrkA-C domain
TrkA_C               PF02080.16    71 sp|P0AFU2|YFBS_ECOLI -            610     5e-26   90.1   0.7   2   2   5.3e-15     2e-11   43.3   0.1     1    66   326   392   326   395 0.87 TrkA-C domain
Na_sulph_symp        PF00939.14   471 sp|P0AFU2|YFBS_ECOLI -            610   3.9e-24   85.3  47.0   1   3   1.8e-08   6.7e-05   21.9   4.5    34   118     9    90     4    92 0.92 Sodium:sulfate symporter transmembrane region
Na_sulph_symp        PF00939.14   471 sp|P0AFU2|YFBS_ECOLI -            610   3.9e-24   85.3  47.0   2   3   2.9e-10   1.1e-06   27.8  11.7   341   433    74   163    72   200 0.78 Sodium:sulfate symporter transmembrane region
Na_sulph_symp        PF00939.14   471 sp|P0AFU2|YFBS_ECOLI -            610   3.9e-24   85.3  47.0   3   3   1.4e-16   5.3e-13   48.6  16.4   277   461   427   604   416   609 0.88 Sodium:sulfate symporter transmembrane region
DctM                 PF06808.7    416 sp|P0AFU2|YFBS_ECOLI -            610   4.2e-08   32.1  52.7   1   2   4.7e-05      0.17   10.3  20.0   246   370    29   149     4   162 0.73 DctM-like transporters
DctM                 PF06808.7    416 sp|P0AFU2|YFBS_ECOLI -            610   4.2e-08   32.1  52.7   2   2   2.5e-10   9.3e-07   27.7  23.5   215   411   414   604   392   609 0.79 DctM-like transporters
YfbU                 PF03887.9    166 sp|P0A8W8|YFBU_ECOLI -            164   4.6e-85  283.2   3.1   1   1   6.9e-89   5.1e-85  283.1   3.1     1   166     1   164     1   164 1.00 YfbU domain
HAD_2                PF13419.1    176 sp|P77625|YFBT_ECOLI -            216     2e-22   80.2   0.0   1   1   1.1e-25   2.3e-22   80.0   0.0     2   176     7   181     6   181 0.83 Haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P77625|YFBT_ECOLI -            216   4.1e-19   69.8   0.0   1   1   3.5e-21   7.4e-18   65.7   0.0     2   215     4   175     3   175 0.84 haloacid dehalogenase-like hydrolase
Hydrolase_like       PF13242.1     75 sp|P77625|YFBT_ECOLI -            216   2.8e-07   30.1   0.0   1   1   5.1e-10   1.1e-06   28.2   0.0     2    49   136   182   135   202 0.93 HAD-hyrolase-like
HAD                  PF12710.2    192 sp|P77625|YFBT_ECOLI -            216   5.9e-07   29.8   0.0   1   1   3.4e-10   7.1e-07   29.5   0.0     1   138     6   134     6   191 0.62 haloacid dehalogenase-like hydrolase
Hydrolase_6          PF13344.1    101 sp|P77625|YFBT_ECOLI -            216   0.00012   21.8   0.1   1   1   3.9e-07   0.00083   19.2   0.1     1    48     6   117     6   123 0.94 Haloacid dehalogenase-like hydrolase
DUF2623              PF11115.3     95 sp|P77625|YFBT_ECOLI -            216     0.075   12.9   0.0   1   1   6.5e-05      0.14   12.1   0.0    61    91    29    59    10    63 0.92 Protein of unknown function (DUF2623)
DUF1995              PF09353.5    210 sp|P77625|YFBT_ECOLI -            216     0.079   12.5   0.0   1   1   4.3e-05     0.091   12.3   0.0    10    79    46   123    36   200 0.84 Domain of unknown function (DUF1995)
DUF412               PF04217.8    143 sp|P0A8D9|YFBV_ECOLI -            151   9.9e-60  200.4   0.2   1   1   7.6e-64   1.1e-59  200.3   0.2     1   142    10   149    10   150 0.98 Protein of unknown function, DUF412
NUDIX                PF00293.23   135 sp|P65556|YFCD_ECOLI -            180   5.5e-17   61.6   0.3   1   1   6.7e-21     1e-16   60.8   0.3     1   124    36   154    36   165 0.83 NUDIX domain
TauE                 PF01925.14   240 sp|P0AD30|YFCA_ECOLI -            269   4.2e-40  137.7  27.3   1   1   7.1e-44   5.3e-40  137.3  27.3     1   240    18   253    18   253 0.93 Sulfite exporter TauE/SafE
SPC25                PF06703.6    162 sp|P0AD30|YFCA_ECOLI -            269     0.046   13.2   0.1   1   1   1.2e-05      0.09   12.3   0.1    24    70    79   127    75   130 0.86 Microsomal signal peptidase 25 kDa subunit (SPC25)
GST_C_4              PF14834.1    117 sp|P77544|YFCF_ECOLI -            214   2.1e-68  227.6   0.1   1   1   9.3e-72   2.8e-68  227.2   0.1     1   117    95   211    95   211 0.99 Glutathione S-transferase, C-terminal domain
GST_N_3              PF13417.1     75 sp|P77544|YFCF_ECOLI -            214   8.4e-14   51.5   0.0   1   1   5.4e-17   1.6e-13   50.6   0.0     6    74    15    86    13    87 0.87 Glutathione S-transferase, N-terminal domain
GST_N                PF02798.15    76 sp|P77544|YFCF_ECOLI -            214   1.5e-12   47.4   0.0   1   1     9e-16   2.7e-12   46.6   0.0    12    75    19    80     6    81 0.93 Glutathione S-transferase, N-terminal domain
GST_N_2              PF13409.1     70 sp|P77544|YFCF_ECOLI -            214   2.6e-09   36.9   0.0   1   1   1.3e-12   3.9e-09   36.3   0.0     1    69    15    81    15    82 0.88 Glutathione S-transferase, N-terminal domain
DUF505               PF04458.7    591 sp|P77544|YFCF_ECOLI -            214      0.15   10.1   0.0   2   2   0.00021      0.61    8.1   0.0    49   109   128   189   124   194 0.89 Protein of unknown function (DUF505)
GST_N_3              PF13417.1     75 sp|P77526|YFCG_ECOLI -            215   2.3e-11   43.7   0.0   1   1   1.5e-14   3.7e-11   43.0   0.0     6    70     8    82     4    91 0.86 Glutathione S-transferase, N-terminal domain
GST_C                PF00043.20    95 sp|P77526|YFCG_ECOLI -            215   2.2e-10   40.4   0.0   1   1   1.3e-13   3.2e-10   39.8   0.0    32    95   136   197   114   197 0.93 Glutathione S-transferase, C-terminal domain
GST_C_2              PF13410.1     69 sp|P77526|YFCG_ECOLI -            215   2.7e-10   39.9   0.1   1   1   2.2e-13   5.3e-10   39.0   0.1     2    69   128   192   127   192 0.94 Glutathione S-transferase, C-terminal domain
GST_N_2              PF13409.1     70 sp|P77526|YFCG_ECOLI -            215   9.8e-10   38.3   0.0   1   1   8.2e-13     2e-09   37.2   0.0     3    69    10    81     9    82 0.89 Glutathione S-transferase, N-terminal domain
GST_N                PF02798.15    76 sp|P77526|YFCG_ECOLI -            215   1.8e-09   37.5   0.0   1   2   6.1e-12   1.5e-08   34.6   0.0    11    76    11    81     4    81 0.92 Glutathione S-transferase, N-terminal domain
GST_C_3              PF14497.1     99 sp|P77526|YFCG_ECOLI -            215   3.9e-06   27.2   0.0   1   1   2.7e-09   6.6e-06   26.5   0.0    39    98   136   194   116   195 0.80 Glutathione S-transferase, C-terminal domain
Epimerase            PF01370.16   236 sp|P77775|YFCH_ECOLI -            297   1.9e-22   79.8   0.0   1   1   2.3e-25   2.7e-22   79.3   0.0     1   227     3   216     3   243 0.89 NAD dependent epimerase/dehydratase family
DUF1731              PF08338.6     48 sp|P77775|YFCH_ECOLI -            297   6.6e-18   63.9   0.6   1   1   1.3e-20   1.5e-17   62.8   0.1     1    47   249   295   249   296 0.98 Domain of unknown function (DUF1731)
NAD_binding_10       PF13460.1    183 sp|P77775|YFCH_ECOLI -            297   2.6e-16   60.1   0.0   1   1   2.8e-19   3.2e-16   59.8   0.0     1   178     3   209     3   214 0.67 NADH(P)-binding
NmrA                 PF05368.8    233 sp|P77775|YFCH_ECOLI -            297   4.6e-05   22.7   0.1   1   1   5.9e-08   6.7e-05   22.2   0.1     1    35     3    37     3    63 0.92 NmrA-like family
NAD_binding_4        PF07993.7    249 sp|P77775|YFCH_ECOLI -            297   0.00012   21.1   0.4   1   2   4.1e-07   0.00047   19.1   0.1     1    35     5    37     5    48 0.90 Male sterility protein
adh_short            PF00106.20   167 sp|P77775|YFCH_ECOLI -            297     0.001   19.0   0.3   1   2   9.3e-06     0.011   15.7   0.3     3    40     3    37     2    70 0.78 short chain dehydrogenase
F420_oxidored        PF03807.12    96 sp|P77775|YFCH_ECOLI -            297    0.0015   18.9   0.0   1   1   2.9e-06    0.0033   17.8   0.0     3    42     4    40     2    64 0.88 NADP oxidoreductase coenzyme F420-dependent
3Beta_HSD            PF01073.14   280 sp|P77775|YFCH_ECOLI -            297    0.0047   15.6   0.0   1   1   5.5e-06    0.0063   15.2   0.0     1    36     4    37     4   148 0.67 3-beta hydroxysteroid dehydrogenase/isomerase family
RmlD_sub_bind        PF04321.12   287 sp|P77775|YFCH_ECOLI -            297    0.0073   15.2   0.0   1   1   1.2e-05     0.013   14.3   0.0     1    34     1    42     1   106 0.75 RmlD substrate binding domain
NAD_binding_2        PF03446.10   163 sp|P77775|YFCH_ECOLI -            297     0.012   15.4   0.0   1   1   2.4e-05     0.028   14.2   0.0     8    52     8    52     1    87 0.84 NAD binding domain of 6-phosphogluconate dehydrogenase
TrkA_N               PF02254.13   116 sp|P77775|YFCH_ECOLI -            297     0.017   15.1   0.0   1   1   3.4e-05     0.039   13.9   0.0     5    38     8    41     3    57 0.82 TrkA-N domain
KR                   PF08659.5    181 sp|P77775|YFCH_ECOLI -            297     0.022   14.4   0.1   1   2   0.00017       0.2   11.3   0.2     4    34     4    33     2    46 0.79 KR domain
Polysacc_synt_2      PF02719.10   294 sp|P77775|YFCH_ECOLI -            297     0.057   12.3   0.0   1   2   0.00058      0.66    8.8   0.1     1    29     3    30     3    44 0.79 Polysaccharide biosynthesis protein
MFS_1                PF07690.11   352 sp|P77549|YFCJ_ECOLI -            392   2.3e-32  112.0  66.2   1   2   1.5e-20   2.2e-16   59.5  35.4     1   245    20   256    20   260 0.80 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P77549|YFCJ_ECOLI -            392   2.3e-32  112.0  66.2   2   2   1.3e-18   1.9e-14   53.1  35.0     3   173   223   390   222   392 0.87 Major Facilitator Superfamily
Metallophos_2        PF12850.2    156 sp|P67095|YFCE_ECOLI -            184     2e-26   92.7   0.0   1   1   5.1e-30   2.5e-26   92.3   0.0     1   152     2   162     2   165 0.88 Calcineurin-like phosphoesterase superfamily domain
Metallophos          PF00149.23   200 sp|P67095|YFCE_ECOLI -            184   6.4e-13   48.5   0.2   1   1   1.7e-14   8.5e-11   41.6   0.2     1   199     2   130     2   131 0.84 Calcineurin-like phosphoesterase
Metallophos_3        PF14582.1    255 sp|P67095|YFCE_ECOLI -            184     0.018   14.2   0.0   1   1   5.1e-06     0.025   13.7   0.0     7    70     3    71     1    85 0.80 Metallophosphoesterase, calcineurin superfamily
Transposase_31       PF04754.7    205 sp|P77768|YFCI_ECOLI -            296   2.6e-83  278.4   0.1   1   1   2.3e-87   3.5e-83  278.0   0.1     1   204     8   209     8   210 0.99 Putative transposase, YhgA-like
Smr                  PF01713.16    83 sp|P0A8B2|YFCN_ECOLI -            183   2.2e-17   63.0   0.3   1   1   5.6e-21   4.1e-17   62.1   0.3     1    82    98   172    98   173 0.98 Smr domain
DUF4187              PF13821.1     55 sp|P0A8B2|YFCN_ECOLI -            183      0.05   13.1   0.0   1   1   1.2e-05     0.088   12.4   0.0     8    43   104   138    99   143 0.81 Domain of unknown function (DUF4187)
Fimbrial             PF00419.15   145 sp|P76499|YFCP_ECOLI -            179     1e-19   71.1   0.7   1   1   8.1e-24   1.2e-19   70.9   0.7     2   144    33   178    32   179 0.87 Fimbrial protein
Fimbrial             PF00419.15   145 sp|P76500|YFCQ_ECOLI -            162   1.1e-24   87.3   0.0   1   1   8.4e-29   1.2e-24   87.1   0.0     1   145    23   162    23   162 0.90 Fimbrial protein
Fimbrial             PF00419.15   145 sp|P76501|YFCR_ECOLI -            170   2.1e-27   96.1   1.7   1   1   1.8e-31   2.6e-27   95.7   1.7     8   145    42   170    35   170 0.91 Fimbrial protein
PapD_N               PF00345.15   122 sp|P77599|YFCS_ECOLI -            250   8.6e-37  125.6   0.9   1   2   1.2e-40   8.6e-37  125.6   0.9     1   121    29   147    29   148 0.93 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_C               PF02753.12    68 sp|P77599|YFCS_ECOLI -            250   7.4e-10   38.5   1.0   1   1   2.8e-13   2.1e-09   37.0   1.0     2    66   170   231   169   233 0.84 Pili assembly chaperone PapD, C-terminal domain
Usher                PF00577.15   552 sp|P77196|YFCU_ECOLI -            881  4.1e-188  626.5  26.8   1   1    1e-191  5.1e-188  626.2  26.8     2   552   197   759   196   759 0.97 Outer membrane usher protein
PapC_N               PF13954.1    146 sp|P77196|YFCU_ECOLI -            881   8.6e-42  142.1   0.0   1   1   3.3e-45   1.7e-41  141.2   0.0     2   145    34   180    33   181 0.98 PapC N-terminal domain
PapC_C               PF13953.1     68 sp|P77196|YFCU_ECOLI -            881   1.7e-15   56.3   0.0   1   1   1.2e-18   6.2e-15   54.6   0.0     3    64   771   830   769   834 0.93 PapC C-terminal domain
Fimbrial             PF00419.15   145 sp|P77288|YFCV_ECOLI -            187   5.2e-16   59.1   6.0   2   2   7.1e-20   5.2e-16   59.1   6.0     3   144    34   186    32   187 0.78 Fimbrial protein
EAF                  PF09816.4    109 sp|P77288|YFCV_ECOLI -            187     0.034   14.1   0.1   1   1   9.1e-06     0.068   13.1   0.1    45    89    70   115    58   118 0.78 RNA polymerase II transcription elongation factor
DUF406               PF04175.7     94 sp|P0AD33|YFCZ_ECOLI -             94   1.3e-33  115.3   1.5   1   1   9.5e-38   1.4e-33  115.2   1.5     3    94     3    94     1    94 0.98 Protein of unknown function (DUF406)
Mem_trans            PF03547.13   385 sp|P0AA49|YFDV_ECOLI -            314   1.8e-58  197.6  21.9   1   2   1.1e-36   4.1e-33  114.2   3.3     4   155     7   161     4   168 0.96 Membrane transport protein
Mem_trans            PF03547.13   385 sp|P0AA49|YFDV_ECOLI -            314   1.8e-58  197.6  21.9   2   2   3.7e-29   1.4e-25   89.4  11.5   236   385   165   307   160   307 0.96 Membrane transport protein
DUF4234              PF14018.1     75 sp|P0AA49|YFDV_ECOLI -            314     0.016   14.9   0.2   1   1   4.3e-06     0.016   14.9   0.2    40    73    65    98    47    99 0.86 Domain of unknown function (DUF4234)
UPF0197              PF05251.7     77 sp|P0AA49|YFDV_ECOLI -            314     0.044   14.0   7.0   1   2   6.5e-05      0.24   11.7   1.0    19    67    69   117    62   120 0.83 Uncharacterised protein family (UPF0197)
DUF4149              PF13664.1    101 sp|P0AA49|YFDV_ECOLI -            314       9.2    6.3  19.0   1   4   0.00011      0.39   10.7   1.6    21    93    19    91     1    98 0.78 Domain of unknown function (DUF4149)
Voltage_CLC          PF00654.15   355 sp|P67729|YFEO_ECOLI -            418   3.3e-19   69.1  37.3   2   2   2.2e-23   3.3e-19   69.1  37.3    34   320    93   368    64   397 0.79 Voltage gated chloride channel
Beta-lactamase       PF00144.19   330 sp|P77619|YFEW_ECOLI -            434   3.5e-70  236.6   0.9   1   1   2.7e-74     4e-70  236.4   0.9     2   328    44   412    43   414 0.94 Beta-lactamase
Dyp_perox            PF04261.7    313 sp|P76536|YFEX_ECOLI -            299    2e-105  352.0   0.0   1   1  1.6e-109  2.4e-105  351.7   0.0     1   312     5   295     5   296 0.98 Dyp-type peroxidase family
ArsC                 PF03960.10   110 sp|P24178|YFFB_ECOLI -            118   2.4e-32  111.2   0.0   1   1   3.7e-36   2.7e-32  111.0   0.0     1   110     5   114     5   114 0.97 ArsC family
Glutaredoxin         PF00462.19    60 sp|P24178|YFFB_ECOLI -            118     0.055   13.4   0.0   1   1   1.1e-05     0.082   12.9   0.0     1    31     2    32     2    54 0.78 Glutaredoxin
ArsC                 PF03960.10   110 sp|P76569|YFGD_ECOLI -            119   1.5e-33  115.1   0.1   1   1   2.3e-37   1.7e-33  114.9   0.1     1   110     8   117     8   117 0.99 ArsC family
Glutaredoxin         PF00462.19    60 sp|P76569|YFGD_ECOLI -            119   9.4e-06   25.5   0.0   1   2     3e-07    0.0022   17.9   0.0     1    44     5    48     5    54 0.89 Glutaredoxin
TPR_21               PF09976.4    145 sp|P76576|YFGM_ECOLI -            206   3.9e-46  156.5  13.6   1   1   3.8e-49   5.2e-46  156.1  13.6     1   144    43   184    43   185 0.99 Tetratricopeptide repeat
TPR_16               PF13432.1     65 sp|P76576|YFGM_ECOLI -            206   4.1e-05   24.1   7.7   1   2   6.9e-07   0.00093   19.8   2.8     1    56    92   150    92   158 0.92 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|P76576|YFGM_ECOLI -            206   4.3e-05   23.7  12.1   2   3   1.5e-07    0.0002   21.6   5.1     3    52   100   152    98   155 0.84 Tetratricopeptide repeat
TPR_11               PF13414.1     69 sp|P76576|YFGM_ECOLI -            206   0.00029   20.3   1.5   1   2   4.3e-06    0.0058   16.2   1.0     3    62    88   149    86   151 0.85 TPR repeat
Apc3                 PF12895.2     84 sp|P76576|YFGM_ECOLI -            206   0.00097   19.2   0.8   1   1   1.3e-06    0.0018   18.3   0.8     9    82    72   149    69   151 0.86 Anaphase-promoting complex, cyclosome, subunit 3
TPR_14               PF13428.1     44 sp|P76576|YFGM_ECOLI -            206   0.00097   19.5   9.9   1   3   0.00046      0.62   10.8   0.6     5    37    92   125    88   129 0.79 Tetratricopeptide repeat
Pex19                PF04614.7    249 sp|P76576|YFGM_ECOLI -            206      0.06   12.9   1.5   1   1   6.1e-05     0.082   12.5   1.5    46   134    95   198    65   202 0.81 Pex19 protein family
TPR_12               PF13424.1     78 sp|P76576|YFGM_ECOLI -            206     0.091   12.7   5.1   1   1   3.7e-05      0.05   13.5   2.0     8    69    92   148    83   150 0.85 Tetratricopeptide repeat
Abhydrolase_5        PF12695.2    145 sp|P77538|YFHR_ECOLI -            284     9e-28   96.8   0.0   1   1   7.6e-31   1.1e-27   96.5   0.0     1   144    80   256    80   257 0.91 Alpha/beta hydrolase family
Abhydrolase_6        PF12697.2    228 sp|P77538|YFHR_ECOLI -            284     6e-16   59.0   0.3   1   2   3.4e-14     5e-11   42.9   0.1     1   102    81   185    81   197 0.89 Alpha/beta hydrolase family
Abhydrolase_6        PF12697.2    228 sp|P77538|YFHR_ECOLI -            284     6e-16   59.0   0.3   2   2   1.5e-05     0.022   14.6   0.0   170   216   209   257   184   269 0.80 Alpha/beta hydrolase family
Abhydrolase_1        PF00561.15   230 sp|P77538|YFHR_ECOLI -            284   6.7e-10   38.9   0.2   1   2   4.8e-08   7.1e-05   22.4   0.0     1    79   106   184   106   207 0.91 alpha/beta hydrolase fold
Abhydrolase_1        PF00561.15   230 sp|P77538|YFHR_ECOLI -            284   6.7e-10   38.9   0.2   2   2   1.2e-05     0.017   14.6   0.0   174   218   215   260   196   264 0.81 alpha/beta hydrolase fold
Peptidase_S9         PF00326.16   213 sp|P77538|YFHR_ECOLI -            284     2e-09   36.9   0.0   1   1   9.9e-12   1.5e-08   34.1   0.0     8   212    99   282    94   283 0.72 Prolyl oligopeptidase family
Hydrolase_4          PF12146.3     79 sp|P77538|YFHR_ECOLI -            284   1.8e-07   30.9   0.0   1   2     1e-09   1.5e-06   27.9   0.0    11    61    73   123    67   140 0.82 Putative lysophospholipase
FSH1                 PF03959.8    212 sp|P77538|YFHR_ECOLI -            284   0.00064   19.2   0.0   1   1   6.6e-07   0.00098   18.6   0.0   135   198   174   254   116   258 0.72 Serine hydrolase (FSH1)
AXE1                 PF05448.7    320 sp|P77538|YFHR_ECOLI -            284    0.0021   16.6   0.1   1   1   8.5e-05      0.13   10.7   0.1   157   194   130   167    48   195 0.84 Acetyl xylan esterase (AXE1)
Abhydrolase_2        PF02230.11   216 sp|P77538|YFHR_ECOLI -            284    0.0039   16.6   0.2   1   1   2.1e-05     0.031   13.7   0.2   137   181   197   242    76   247 0.86 Phospholipase/Carboxylesterase
DLH                  PF01738.13   218 sp|P77538|YFHR_ECOLI -            284      0.05   12.8   0.0   1   1   0.00016      0.24   10.6   0.0    74   169   124   240   116   271 0.75 Dienelactone hydrolase family
Abhydrolase_3        PF07859.8    211 sp|P77538|YFHR_ECOLI -            284     0.069   12.7   0.0   1   1   5.9e-05     0.088   12.3   0.0    28    85   104   162    81   210 0.69 alpha/beta hydrolase fold
OmpA                 PF00691.15    97 sp|P07021|YFIB_ECOLI -            160   3.9e-18   65.6   0.1   1   1     4e-22   5.9e-18   65.0   0.1     1    97    55   151    55   151 0.95 OmpA family
SpoU_methylase       PF00588.14   142 sp|P0AGJ5|YFIF_ECOLI -            345   6.9e-29  100.5   0.0   1   1   1.4e-32     1e-28  100.0   0.0     3   141   199   336   197   337 0.95 SpoU rRNA Methylase family
SpoU_sub_bind        PF08032.7     76 sp|P0AGJ5|YFIF_ECOLI -            345   2.3e-12   46.8   0.0   1   1   6.8e-16     5e-12   45.8   0.0     2    73   110   181   109   184 0.96 RNA 2'-O ribose methyltransferase substrate binding
Cu-oxidase_4         PF02578.10   234 sp|P33644|YFIH_ECOLI -            243   2.1e-79  265.8   0.0   1   1   1.6e-83   2.4e-79  265.6   0.0     2   234    20   242    19   242 0.97 Multi-copper polyphenol oxidoreductase laccase
DTW                  PF03942.10   204 sp|Q47319|YFIP_ECOLI -            232   2.7e-60  203.0   0.0   1   1   2.1e-64   3.2e-60  202.8   0.0     1   202    27   216    27   218 0.97 DTW domain
DUF21                PF01595.15   183 sp|P37908|YFJD_ECOLI -            428   2.1e-55  186.8   5.2   1   1   6.1e-59     3e-55  186.3   5.2     2   175     9   183     8   188 0.98 Domain of unknown function DUF21
CorC_HlyC            PF03471.12    81 sp|P37908|YFJD_ECOLI -            428   5.1e-20   71.0   0.2   1   1   3.4e-23   1.7e-19   69.3   0.2     2    80   343   419   342   420 0.95 Transporter associated domain
CBS                  PF00571.23    57 sp|P37908|YFJD_ECOLI -            428   4.2e-06   26.4   0.1   3   3   1.3e-08   6.3e-05   22.6   0.0     8    56   278   326   257   327 0.90 CBS domain
DUF932               PF06067.6    239 sp|P52132|YFJQ_ECOLI -            273   1.2e-65  221.1   0.0   1   1   9.4e-70   1.4e-65  220.9   0.0     1   239    37   262    37   262 0.99 Domain of unknown function (DUF932)
ArsB                 PF02040.10   423 sp|P52137|YFJV_ECOLI -            338  7.7e-167  555.5  29.9   1   1  1.2e-170  8.7e-167  555.3  29.9    91   423     2   334     1   334 0.99 Arsenical pump membrane protein
CitMHS               PF03600.11   351 sp|P52137|YFJV_ECOLI -            338   1.6e-08   33.5  30.5   1   1   3.1e-12   2.3e-08   33.0  30.5    97   350     8   277     2   278 0.80 Citrate transporter
Antirestrict         PF03230.8     94 sp|P52139|YFJX_ECOLI -            152   7.9e-40  134.7   0.2   1   1   7.4e-44   1.1e-39  134.2   0.2     1    94    57   152    57   152 0.98 Antirestriction protein
RadC                 PF04002.10   123 sp|P52140|YFJY_ECOLI -            160   4.2e-48  162.0   0.0   1   1   1.1e-51   5.4e-48  161.7   0.0     2   123    39   160    38   160 0.98 RadC-like JAB domain
Prok-JAB             PF14464.1    105 sp|P52140|YFJY_ECOLI -            160    0.0044   16.5   0.1   1   1   1.2e-06    0.0057   16.2   0.1    58    96   101   149    26   157 0.78 Prokaryotic homologs of the JAB domain
Toxin-JAB1           PF15659.1    162 sp|P52140|YFJY_ECOLI -            160     0.028   14.2   0.0   1   1   8.5e-06     0.042   13.7   0.0    99   140    85   127    78   140 0.76 JAB-like toxin  1
YagB_YeeU_YfjZ       PF06154.6    105 sp|P52141|YFJZ_ECOLI -            105   1.5e-54  182.6   0.0   1   1   1.1e-58   1.6e-54  182.5   0.0     2   104     2   104     1   105 0.98 YagB/YeeU/YfjZ family
ArsC                 PF03960.10   110 sp|P0CF86|YFJU_ECOLI -             51   7.7e-10   38.8   0.0   1   1   1.1e-13   8.2e-10   38.7   0.0     1    43     7    49     7    51 0.97 ArsC family
Glutaredoxin         PF00462.19    60 sp|P0CF86|YFJU_ECOLI -             51   0.00012   21.9   0.0   1   1   1.9e-08   0.00014   21.7   0.0     1    44     4    47     4    49 0.96 Glutaredoxin
MFS_1                PF07690.11   352 sp|P76628|YGAY_ECOLI -            394   8.5e-35  120.0  55.1   1   2   8.1e-28     4e-24   84.9  24.7     2   182    17   193    16   217 0.86 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P76628|YGAY_ECOLI -            394   8.5e-35  120.0  55.1   2   2   1.6e-14   8.1e-11   41.2  22.4     3   173   218   386   216   394 0.89 Major Facilitator Superfamily
OATP                 PF03137.15   539 sp|P76628|YGAY_ECOLI -            394    0.0011   17.1   2.5   1   1   5.5e-07    0.0027   15.8   2.5     4    87    12    95     9   113 0.92 Organic Anion Transporter Polypeptide (OATP) family
DUF1228              PF06779.9     85 sp|P76628|YGAY_ECOLI -            394    0.0041   17.1   3.6   1   4   8.2e-07    0.0041   17.1   3.6    12    75    31    95    19   120 0.82 Protein of unknown function (DUF1228)
DUF883               PF05957.8     94 sp|P0ADQ7|YGAM_ECOLI -            109   6.5e-27   93.7   1.2   1   1   2.1e-30   7.7e-27   93.5   1.2     1    94    15   107    15   107 0.97 Bacterial protein of unknown function (DUF883)
Activator-TraM       PF11657.3    144 sp|P0ADQ7|YGAM_ECOLI -            109   0.00099   18.6   0.1   1   1   2.9e-07    0.0011   18.4   0.1    43    89    16    62     6   101 0.77 Transcriptional activator TraM
Syntaxin             PF00804.20   103 sp|P0ADQ7|YGAM_ECOLI -            109     0.021   14.9   0.1   1   1   7.2e-06     0.027   14.6   0.1    42    93     9    60     2    68 0.87 Syntaxin
HIG_1_N              PF04588.8     54 sp|P0ADQ7|YGAM_ECOLI -            109     0.031   14.0   0.1   1   1   1.5e-05     0.056   13.1   0.1     2    26    83   107    82   109 0.93 Hypoxia induced protein conserved region
AzlC                 PF03591.9    143 sp|P76630|YGAZ_ECOLI -            245   1.4e-41  141.7  10.1   1   2   1.9e-45   1.4e-41  141.7  10.1     1   141    23   165    23   167 0.97 AzlC protein
NAD_binding_2        PF03446.10   163 sp|Q46888|YGBJ_ECOLI -            302   7.4e-37  126.7   5.7   1   1   3.6e-40   1.1e-36  126.1   5.7     3   162     8   168     6   169 0.95 NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11       PF14833.1    122 sp|Q46888|YGBJ_ECOLI -            302   1.6e-35  121.7   0.4   2   2   5.5e-39   1.6e-35  121.7   0.4     1   121   172   291   172   292 0.98 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
3HCDH_N              PF02737.13   180 sp|Q46888|YGBJ_ECOLI -            302   0.00075   19.1   2.8   1   1   3.6e-06     0.011   15.4   2.8     1    41     8    48     8   119 0.87 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
F420_oxidored        PF03807.12    96 sp|Q46888|YGBJ_ECOLI -            302      0.01   16.2   0.3   1   1   8.9e-06     0.027   14.9   0.3     2    78     9    81     8    97 0.84 NADP oxidoreductase coenzyme F420-dependent
Arg_repressor_C      PF02863.13    70 sp|Q46888|YGBJ_ECOLI -            302     0.064   12.7   0.4   1   1   4.7e-05      0.14   11.6   0.3    19    48    90   119    70   123 0.92 Arginine repressor, C-terminal domain
Aldolase_II          PF00596.16   184 sp|Q46890|YGBL_ECOLI -            212   1.2e-44  152.1   0.0   1   1   8.9e-49   1.3e-44  151.9   0.0     2   182    14   190    13   192 0.94 Class II Aldolase and Adducin N-terminal domain
GntP_permease        PF02447.11   441 sp|Q46892|YGBN_ECOLI -            454  4.4e-154  513.1  49.4   1   1    1e-157    5e-154  513.0  49.4     2   440     5   453     4   454 0.98 GntP family permease
CitMHS               PF03600.11   351 sp|Q46892|YGBN_ECOLI -            454   1.9e-08   33.3  37.2   1   1   4.9e-12   2.4e-08   32.9  37.2     3   320    11   375     7   403 0.80 Citrate transporter
DctM                 PF06808.7    416 sp|Q46892|YGBN_ECOLI -            454    0.0051   15.4  44.3   1   2   0.00015      0.74    8.3  20.3   227   387    11   178     2   195 0.75 DctM-like transporters
DctM                 PF06808.7    416 sp|Q46892|YGBN_ECOLI -            454    0.0051   15.4  44.3   2   2   5.4e-05      0.27    9.7  22.1   148   324   157   360   153   404 0.71 DctM-like transporters
AP_endonuc_2         PF01261.19   213 sp|Q46891|YGBM_ECOLI -            258   5.1e-31  107.6   1.7   1   1   4.1e-35   6.1e-31  107.3   1.7     1   213    21   219    21   219 0.95 Xylose isomerase-like TIM barrel
Fer4_7               PF12838.2     52 sp|Q46905|YGCO_ECOLI -             86   0.00031   21.0   0.1   1   1   2.8e-07   0.00046   20.5   0.1     9    48    31    64    28    67 0.91 4Fe-4S dicluster domain
Fer4_10              PF13237.1     52 sp|Q46905|YGCO_ECOLI -             86    0.0004   20.1   0.5   1   1   3.9e-07   0.00065   19.4   0.5    17    51    32    64    31    72 0.86 4Fe-4S dicluster domain
Fer4_21              PF14697.1     59 sp|Q46905|YGCO_ECOLI -             86    0.0013   18.5   0.1   1   1   1.4e-06    0.0023   17.7   0.1     2    25    48    71    47    78 0.89 4Fe-4S dicluster domain
Fer4_2               PF12797.2     22 sp|Q46905|YGCO_ECOLI -             86    0.0061   16.4   3.2   2   2     4e-06    0.0067   16.2   0.4     4    20    48    64    46    75 0.90 4Fe-4S binding domain
Fer4_9               PF13187.1     55 sp|Q46905|YGCO_ECOLI -             86     0.017   15.3   0.1   1   1   1.8e-05     0.029   14.6   0.1    10    52    32    66    31    69 0.85 4Fe-4S dicluster domain
Fer4                 PF00037.22    24 sp|Q46905|YGCO_ECOLI -             86     0.031   13.8   2.6   2   2   9.3e-05      0.15   11.6   1.0     2    18    48    64    47    67 0.90 4Fe-4S binding domain
Fer4_19              PF06902.6     64 sp|Q46905|YGCO_ECOLI -             86     0.034   13.9   0.0   1   1     2e-05     0.034   13.9   0.0    27    61     6    41     2    44 0.81 Divergent 4Fe-4S mono-cluster
Fer4_13              PF13370.1     58 sp|Q46905|YGCO_ECOLI -             86     0.069   13.5   2.8   2   2   0.00058      0.96    9.8   1.2     1    18    49    66    49    67 0.88 4Fe-4S single cluster domain
FGGY_C               PF02782.11   198 sp|P55138|YGCE_ECOLI -            492   6.2e-23   81.4   0.0   1   1     2e-26     1e-22   80.7   0.0     1   197   225   419   225   420 0.79 FGGY family of carbohydrate kinases, C-terminal domain
FGGY_N               PF00370.16   245 sp|P55138|YGCE_ECOLI -            492   2.4e-21   76.1   0.0   1   2   2.5e-15   1.2e-11   44.3   0.0     1   105     5   110     5   120 0.92 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_N               PF00370.16   245 sp|P55138|YGCE_ECOLI -            492   2.4e-21   76.1   0.0   2   2   6.2e-11     3e-07   29.9   0.0   154   245   123   216   112   216 0.91 FGGY family of carbohydrate kinases, N-terminal domain
BcrAD_BadFG          PF01869.15   271 sp|P55138|YGCE_ECOLI -            492    0.0005   19.4   0.0   1   2   5.8e-07    0.0028   16.9   0.0     1    42     7    48     7   142 0.92 BadF/BadG/BcrA/BcrD ATPase family
DAO                  PF01266.19   358 sp|Q46904|YGCN_ECOLI -            423   9.2e-22   77.4   8.3   1   2   1.7e-12   1.5e-09   37.2   0.8     1    48     6    52     6    88 0.80 FAD dependent oxidoreductase
DAO                  PF01266.19   358 sp|Q46904|YGCN_ECOLI -            423   9.2e-22   77.4   8.3   2   2   1.7e-14   1.6e-11   43.7   1.4   140   357    95   324    69   325 0.66 FAD dependent oxidoreductase
FAD_oxidored         PF12831.2    428 sp|Q46904|YGCN_ECOLI -            423   2.1e-10   40.2   0.0   1   1     4e-13   3.7e-10   39.4   0.0     1   143     6   151     6   164 0.73 FAD dependent oxidoreductase
FAD_binding_2        PF00890.19   417 sp|Q46904|YGCN_ECOLI -            423   4.6e-10   38.9   1.9   1   2   2.3e-10   2.1e-07   30.1   0.6     1    33     6    38     6    51 0.87 FAD binding domain
HI0933_like          PF03486.9    409 sp|Q46904|YGCN_ECOLI -            423     7e-10   37.9   0.0   1   2   4.2e-10   3.9e-07   28.8   0.0     1    43     5    47     5    89 0.88 HI0933-like protein
Pyr_redox_2          PF07992.9    201 sp|Q46904|YGCN_ECOLI -            423   1.6e-08   34.6   0.0   1   1   2.6e-11   2.4e-08   34.1   0.0     1   125     6   161     6   187 0.86 Pyridine nucleotide-disulphide oxidoreductase
NAD_binding_8        PF13450.1     68 sp|Q46904|YGCN_ECOLI -            423   2.5e-07   30.5   0.2   1   1   8.9e-10   8.2e-07   28.9   0.2     1    32     9    40     9    64 0.87 NAD(P)-binding Rossmann-like domain
FAD_binding_3        PF01494.14   356 sp|Q46904|YGCN_ECOLI -            423   2.6e-07   30.0   1.2   1   1   8.3e-09   7.7e-06   25.1   1.2     1   197     4   183     4   348 0.80 FAD binding domain
GIDA                 PF01134.17   392 sp|Q46904|YGCN_ECOLI -            423   4.6e-07   29.0   0.0   1   2     9e-09   8.4e-06   24.8   0.0     1    29     6    37     6    77 0.85 Glucose inhibited division protein A
Trp_halogenase       PF04820.9    454 sp|Q46904|YGCN_ECOLI -            423   5.9e-06   25.1   0.2   1   2   9.9e-05     0.092   11.3   0.2     1    37     6    39     6    42 0.93 Tryptophan halogenase
Trp_halogenase       PF04820.9    454 sp|Q46904|YGCN_ECOLI -            423   5.9e-06   25.1   0.2   2   2   7.6e-05      0.07   11.7   0.0   148   215    96   162    71   169 0.90 Tryptophan halogenase
Lycopene_cycl        PF05834.7    374 sp|Q46904|YGCN_ECOLI -            423   1.1e-05   24.5   0.4   1   1   5.6e-08   5.2e-05   22.3   0.4     1   147     6   163     6   178 0.68 Lycopene cyclase protein
Thi4                 PF01946.12   230 sp|Q46904|YGCN_ECOLI -            423     4e-05   22.8   0.0   1   1   7.9e-08   7.3e-05   21.9   0.0    18    65     5    52     2    60 0.93 Thi4 family
3HCDH_N              PF02737.13   180 sp|Q46904|YGCN_ECOLI -            423    0.0068   16.0   0.1   1   1   1.8e-05     0.016   14.8   0.0     2    32     7    37     6    58 0.91 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Pyr_redox            PF00070.22    80 sp|Q46904|YGCN_ECOLI -            423      0.01   16.2   0.0   1   2   0.00068      0.63   10.4   0.0     2    35     7    40     6    75 0.87 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3          PF13738.1    203 sp|Q46904|YGCN_ECOLI -            423     0.038   14.0   0.0   1   1   0.00015      0.14   12.1   0.0     1    43     8    52     8   200 0.61 Pyridine nucleotide-disulphide oxidoreductase
ApbA                 PF02558.11   151 sp|Q46904|YGCN_ECOLI -            423      0.16   11.3   0.1   1   1   0.00029      0.27   10.6   0.1     1    31     7    37     7    72 0.89 Ketopantoate reductase PanE/ApbA
ETF                  PF01012.16   164 sp|Q46908|YGCR_ECOLI -            259   1.7e-31  109.1   0.0   1   1   2.1e-35   3.1e-31  108.3   0.0    16   159    42   185    37   191 0.95 Electron transfer flavoprotein domain
TPM                  PF04536.9    119 sp|P55140|YGCG_ECOLI -            290   1.5e-33  115.2   0.4   1   1   2.5e-37   1.9e-33  114.8   0.4     2   118    36   153    35   154 0.98 TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase
FliS                 PF02561.9    122 sp|P55140|YGCG_ECOLI -            290     0.051   13.4   0.1   1   1   1.2e-05     0.092   12.6   0.1    56   116    26    84    19    89 0.77 Flagellar protein FliS
Sugar_tr             PF00083.19   451 sp|Q46909|YGCS_ECOLI -            445   8.9e-50  169.5  24.9   1   1   3.1e-53   1.1e-49  169.2  24.9     7   445    25   430    20   435 0.87 Sugar (and other) transporter
MFS_1                PF07690.11   352 sp|Q46909|YGCS_ECOLI -            445   2.4e-34  118.6  53.2   1   2   1.6e-31   5.9e-28   97.5  37.4     8   309    31   346    21   351 0.81 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|Q46909|YGCS_ECOLI -            445   2.4e-34  118.6  53.2   2   2   4.1e-12   1.5e-08   33.7  21.9    50   178   298   425   295   434 0.86 Major Facilitator Superfamily
MFS_2                PF13347.1    428 sp|Q46909|YGCS_ECOLI -            445    0.0038   15.6  32.8   1   3   3.7e-06     0.014   13.8   5.2   267   374    56   159    34   163 0.81 MFS/sugar transport protein
ETF_alpha            PF00766.14    86 sp|Q46907|YGCQ_ECOLI -            286   3.6e-21   74.5   1.5   1   1   1.3e-24   6.6e-21   73.7   1.5     3    86   164   245   162   245 0.92 Electron transfer flavoprotein FAD-binding domain
ETF                  PF01012.16   164 sp|Q46907|YGCQ_ECOLI -            286     1e-07   31.8   0.2   1   2   7.4e-11   3.6e-07   30.0   0.0    78   159    41   123    27   128 0.83 Electron transfer flavoprotein domain
Rhodanese            PF00581.15   113 sp|Q46907|YGCQ_ECOLI -            286      0.11   12.8   0.0   1   1   4.8e-05      0.23   11.7   0.0    64   109   165   210   125   212 0.80 Rhodanese-like domain
FAD_binding_4        PF01565.18   139 sp|Q46911|YGCU_ECOLI -            484   3.5e-37  126.9   1.5   1   1   8.4e-41   6.2e-37  126.1   1.5     1   138    51   190    51   191 0.97 FAD binding domain
FAD-oxidase_C        PF02913.14   248 sp|Q46911|YGCU_ECOLI -            484   7.3e-21   74.6   0.1   1   1   3.7e-24   2.8e-20   72.7   0.1     2   246   228   477   227   479 0.79 FAD linked oxidases, C-terminal domain
adh_short            PF00106.20   167 sp|P76633|YGCW_ECOLI -            261   2.3e-28   99.1   0.0   1   1   1.5e-31   3.3e-28   98.7   0.0     1   165    19   183    19   185 0.94 short chain dehydrogenase
adh_short_C2         PF13561.1    241 sp|P76633|YGCW_ECOLI -            261   6.7e-22   78.4   0.0   1   1   3.9e-25   8.3e-22   78.1   0.0     6   240    28   258    25   259 0.93 Enoyl-(Acyl carrier protein) reductase
KR                   PF08659.5    181 sp|P76633|YGCW_ECOLI -            261   1.7e-10   40.8   0.0   1   1   1.4e-13   2.9e-10   40.1   0.0     2   162    20   179    19   192 0.88 KR domain
Epimerase            PF01370.16   236 sp|P76633|YGCW_ECOLI -            261     0.023   14.1   0.2   1   1   9.6e-05       0.2   11.0   0.2     2    77    22   106    21   194 0.75 NAD dependent epimerase/dehydratase family
PALP                 PF00291.20   306 sp|P76633|YGCW_ECOLI -            261     0.027   13.7   0.0   1   1   1.6e-05     0.033   13.4   0.0    59   117    20    79     5   152 0.82 Pyridoxal-phosphate dependent enzyme
Eno-Rase_NADH_b      PF12242.3     78 sp|P76633|YGCW_ECOLI -            261     0.076   12.8   0.1   1   1     9e-05      0.19   11.5   0.1    37    67    17    45     4    55 0.87 NAD(P)H binding domain of trans-2-enoyl-CoA reductase
HMD                  PF03201.11    98 sp|P76633|YGCW_ECOLI -            261       0.1   12.5   0.0   1   1   8.8e-05      0.19   11.6   0.0    23    68    68   112    49   116 0.89 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase
DUF423               PF04241.10    89 sp|P0ADR2|YGDD_ECOLI -            131   4.6e-27   93.7   7.2   1   1   5.3e-31   7.8e-27   93.0   7.2     1    89    19   107    19   107 0.99 Protein of unknown function (DUF423)
DUF3412              PF11892.3    123 sp|P0ADR8|YGDH_ECOLI -            454     2e-57  192.3   0.0   1   1   1.2e-60   4.6e-57  191.1   0.0     2   122   333   453   332   454 0.98 Domain of unknown function (DUF3412)
DUF4478              PF14793.1    113 sp|P0ADR8|YGDH_ECOLI -            454   7.5e-48  160.8   0.1   1   1     4e-51   1.5e-47  159.8   0.1     1   112     1   112     1   113 0.97 Domain of unknown function (DUF4478)
Lysine_decarbox      PF03641.9    133 sp|P0ADR8|YGDH_ECOLI -            454     1e-33  115.9   0.1   1   1   4.1e-37   1.5e-33  115.4   0.1     1   133   190   329   190   329 0.95 Possible lysine decarboxylase
Glycos_transf_2      PF00535.21   169 sp|P0ADR8|YGDH_ECOLI -            454     0.062   12.9   0.0   1   1   3.4e-05      0.13   11.9   0.0    12    64    21    72    17    75 0.84 Glycosyl transferase family 2
TerC                 PF03741.11   184 sp|P67127|YGDQ_ECOLI -            237   4.9e-51  172.7  15.2   1   1     9e-55   6.6e-51  172.3  15.2     2   183    17   203    16   204 0.96 Integral membrane protein TerC family
LysE                 PF01810.13   191 sp|P67127|YGDQ_ECOLI -            237      0.39    9.9  14.0   1   2   3.1e-05      0.23   10.7  10.9    25   189    54   202    36   204 0.71 LysE type translocator
TPR_3                PF07720.7     36 sp|Q46787|YGEG_ECOLI -            163   4.5e-22   77.4  17.5   1   2     3e-14   6.4e-11   41.8   4.2     1    36    40    73    40    73 0.98 Tetratricopeptide repeat
TPR_3                PF07720.7     36 sp|Q46787|YGEG_ECOLI -            163   4.5e-22   77.4  17.5   2   2   4.2e-14   8.8e-11   41.3   5.4     1    36    74   107    74   107 0.97 Tetratricopeptide repeat
TPR_19               PF14559.1     68 sp|Q46787|YGEG_ECOLI -            163    0.0074   16.6   0.6   2   2     9e-05      0.19   12.0   0.0     5    58    88   142    87   152 0.82 Tetratricopeptide repeat
TPR_11               PF13414.1     69 sp|Q46787|YGEG_ECOLI -            163    0.0079   15.8   0.8   2   2   3.7e-06    0.0079   15.8   0.8     6    65    77   136    72   144 0.85 TPR repeat
Nckap1               PF09735.4   1117 sp|Q46787|YGEG_ECOLI -            163     0.028   11.9   0.5   1   1   1.7e-05     0.035   11.5   0.5   407   476    79   149    73   156 0.87 Membrane-associated apoptosis protein
TPR_1                PF00515.23    34 sp|Q46787|YGEG_ECOLI -            163      0.95    9.1   9.7   3   3   0.00031      0.67    9.6   0.2     5    24   113   132   109   141 0.92 Tetratricopeptide repeat
Peptidase_M23        PF01551.17    96 sp|Q46798|YGER_ECOLI -            251   2.3e-30  104.5   1.7   2   2   1.1e-33   3.1e-30  104.0   0.6     3    96   145   238   143   238 0.95 Peptidase family M23
LysM                 PF01476.15    44 sp|Q46798|YGER_ECOLI -            251     7e-15   54.6   0.1   1   2   1.4e-17   4.2e-14   52.1   0.0     1    43    42    84    42    85 0.98 LysM domain
Biotin_lipoyl_2      PF13533.1     50 sp|Q46798|YGER_ECOLI -            251   6.3e-05   22.5   0.0   2   2   4.1e-05      0.12   12.0   0.0    16    37   198   219   196   227 0.85 Biotin-lipoyl like
RnfC_N               PF13375.1    101 sp|Q46798|YGER_ECOLI -            251      0.01   15.5   0.0   2   2   4.2e-05      0.13   12.0   0.0    42    67   196   223   190   247 0.79 RnfC Barrel sandwich hybrid domain
HlyD_2               PF12700.2    328 sp|Q46798|YGER_ECOLI -            251     0.058   12.5   0.1   2   2   4.7e-05      0.14   11.2   0.0    19    58   183   222   169   234 0.76 HlyD family secretion protein
OTCace               PF00185.19   158 sp|Q46803|YGEW_ECOLI -            396   9.1e-35  119.8   0.0   1   1   2.1e-38   1.6e-34  119.0   0.0     1   156   187   373   187   374 0.91 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
OTCace_N             PF02729.16   142 sp|Q46803|YGEW_ECOLI -            396   3.7e-28   97.9   0.0   1   2     2e-31   1.5e-27   95.9   0.0     1   142    22   179    22   179 0.88 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
Asp_Glu_race         PF01177.17   216 sp|P03813|YGEA_ECOLI -            230   4.1e-36  124.9   0.2   1   1   1.3e-39   4.7e-36  124.7   0.2     1   215     7   224     7   225 0.93 Asp/Glu/Hydantoin racemase
Asp_Glu_race_2       PF14669.1    233 sp|P03813|YGEA_ECOLI -            230   0.00066   19.0   0.0   1   1   2.6e-07   0.00096   18.5   0.0    55   128    45   119    23   138 0.85 Putative aspartate racemase
Peptidase_M20        PF01546.23   189 sp|P65807|YGEY_ECOLI -            403   2.4e-23   82.6   0.0   2   2   5.2e-27   3.9e-23   81.9   0.0     2   186    78   395    77   398 0.95 Peptidase family M20/M25/M40
M20_dimer            PF07687.9    112 sp|P65807|YGEY_ECOLI -            403   9.4e-17   60.7   0.0   1   1   2.3e-20   1.7e-16   59.9   0.0     2   103   183   282   182   290 0.96 Peptidase dimerisation domain
UPF0149              PF03695.8    178 sp|P0A8C4|YGFB_ECOLI -            192   5.1e-42  143.7   1.4   1   1   3.9e-46   5.8e-42  143.5   1.4     1   175    10   177    10   180 0.94 Uncharacterised protein family (UPF0149)
adh_short            PF00106.20   167 sp|P52037|YGFF_ECOLI -            247   8.2e-36  123.4   4.6   1   1   5.5e-39     1e-35  123.1   4.6     2   165     3   173     2   175 0.93 short chain dehydrogenase
adh_short_C2         PF13561.1    241 sp|P52037|YGFF_ECOLI -            247   7.2e-28   97.9   0.1   1   1   4.6e-31   8.6e-28   97.7   0.1     5   239    10   246     8   247 0.93 Enoyl-(Acyl carrier protein) reductase
KR                   PF08659.5    181 sp|P52037|YGFF_ECOLI -            247   3.2e-18   66.0   2.7   1   1   2.5e-21   4.7e-18   65.4   2.7     2   161     3   168     2   185 0.86 KR domain
Epimerase            PF01370.16   236 sp|P52037|YGFF_ECOLI -            247     3e-06   26.8   0.8   1   1   3.6e-09   6.8e-06   25.6   0.5     1   171     4   190     4   210 0.71 NAD dependent epimerase/dehydratase family
DUF1776              PF08643.5    299 sp|P52037|YGFF_ECOLI -            247    0.0011   18.2   0.0   1   1   6.6e-07    0.0012   18.0   0.0    82   209    69   197    13   225 0.84 Fungal family of unknown function (DUF1776)
THF_DHG_CYH_C        PF02882.14   161 sp|P52037|YGFF_ECOLI -            247    0.0044   16.0   0.1   1   1   7.1e-06     0.013   14.5   0.1    39   104     4    67     2    80 0.83 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
Eno-Rase_NADH_b      PF12242.3     78 sp|P52037|YGFF_ECOLI -            247    0.0079   15.9   0.7   1   2   1.9e-05     0.035   13.8   0.3    42    73     4    33     2    38 0.84 NAD(P)H binding domain of trans-2-enoyl-CoA reductase
GCV_T                PF01571.16   211 sp|P0ADE8|YGFZ_ECOLI -            326   5.4e-28   97.8   0.3   1   1   1.7e-31   8.4e-28   97.1   0.3     4   209    24   217    21   219 0.90 Aminomethyltransferase folate-binding domain
Sortase              PF04203.8    128 sp|P0ADE8|YGFZ_ECOLI -            326     0.025   14.1   0.0   1   1     9e-06     0.045   13.3   0.0    20    95    37   117    21   145 0.74 Sortase family
GCV_T_C              PF08669.6     95 sp|P0ADE8|YGFZ_ECOLI -            326     0.039   13.9   0.0   1   1   1.7e-05     0.082   12.9   0.0     1    41   227   267   227   294 0.75 Glycine cleavage T-protein C-terminal barrel domain
T2SE                 PF00437.15   272 sp|P52052|YGGR_ECOLI -            326     2e-41  141.6   0.0   1   1   5.7e-44   3.3e-41  140.9   0.0    74   265    73   260    10   266 0.83 Type II/IV secretion system protein
AAA_19               PF13245.1     76 sp|P52052|YGGR_ECOLI -            326   1.3e-05   24.8   0.9   1   1   2.2e-07   0.00012   21.7   0.0     7    37   116   147   111   168 0.85 Part of AAA domain
AAA_16               PF13191.1    185 sp|P52052|YGGR_ECOLI -            326   5.2e-05   23.3   3.1   1   1   1.2e-07   6.8e-05   22.9   1.3    23   142   119   261   112   304 0.63 AAA ATPase domain
AAA_29               PF13555.1     62 sp|P52052|YGGR_ECOLI -            326   6.8e-05   22.3   0.2   1   1   2.3e-07   0.00013   21.3   0.2    22    44   120   141   114   150 0.85 P-loop containing region of AAA domain
AAA_23               PF13476.1    202 sp|P52052|YGGR_ECOLI -            326   0.00013   22.3   0.0   1   1     4e-07   0.00023   21.5   0.0    18    40   119   141   111   149 0.89 AAA domain
AAA_30               PF13604.1    196 sp|P52052|YGGR_ECOLI -            326    0.0012   18.4   0.0   1   1   1.3e-05    0.0073   15.9   0.0    12    45   114   147   109   195 0.87 AAA domain
FtsK_SpoIIIE         PF01580.13   205 sp|P52052|YGGR_ECOLI -            326    0.0013   18.2   0.1   1   1   4.7e-06    0.0027   17.2   0.1    40    60   122   142   108   157 0.81 FtsK/SpoIIIE family
TrwB_AAD_bind        PF10412.4    386 sp|P52052|YGGR_ECOLI -            326    0.0013   17.3   0.4   1   1   6.3e-06    0.0036   15.9   0.0    12    47   117   152   110   156 0.89 Type IV secretion-system coupling protein DNA-binding domain
AAA_17               PF13207.1    121 sp|P52052|YGGR_ECOLI -            326    0.0016   19.2   0.0   1   1   1.6e-05    0.0091   16.8   0.0     1    40   122   163   122   238 0.81 AAA domain
AAA_14               PF13173.1    128 sp|P52052|YGGR_ECOLI -            326    0.0021   17.9   0.0   1   1   1.6e-05    0.0089   15.9   0.0     2   115   120   275   119   281 0.65 AAA domain
AAA_22               PF13401.1    131 sp|P52052|YGGR_ECOLI -            326    0.0043   17.1   0.1   1   1   1.5e-05    0.0088   16.1   0.1     3    37   119   156   116   259 0.81 AAA domain
ABC_tran             PF00005.22   137 sp|P52052|YGGR_ECOLI -            326    0.0043   17.3   0.0   1   1   1.4e-05    0.0078   16.5   0.0    13    52   122   166   116   286 0.75 ABC transporter
DUF87                PF01935.12   229 sp|P52052|YGGR_ECOLI -            326    0.0054   16.5   0.0   1   1   1.4e-05    0.0077   16.0   0.0    27    58   124   155   122   267 0.91 Domain of unknown function DUF87
AAA_10               PF12846.2    304 sp|P52052|YGGR_ECOLI -            326    0.0073   15.7   0.0   1   1   2.5e-05     0.014   14.8   0.0     1    34   120   154   120   185 0.81 AAA-like domain
DUF853               PF05872.7    504 sp|P52052|YGGR_ECOLI -            326     0.011   14.1   0.6   1   2   0.00087       0.5    8.6   0.1    18    45   117   144   104   153 0.79 Bacterial protein of unknown function (DUF853)
NACHT                PF05729.7    166 sp|P52052|YGGR_ECOLI -            326     0.025   14.2   0.0   2   2    0.0006      0.34   10.5   0.0     2    29   122   149   121   184 0.88 NACHT domain
SRP54                PF00448.17   196 sp|P52052|YGGR_ECOLI -            326      0.03   13.7   0.1   1   1   8.9e-05     0.051   13.0   0.1     3    34   122   153   120   161 0.85 SRP54-type protein, GTPase domain
AAA_18               PF13238.1    129 sp|P52052|YGGR_ECOLI -            326      0.09   13.0   0.0   1   1    0.0004      0.23   11.7   0.0     1    15   123   137   123   171 0.89 AAA domain
MobB                 PF03205.9    140 sp|P52052|YGGR_ECOLI -            326       0.1   12.3   0.0   1   1   0.00037      0.21   11.2   0.0     3    26   123   146   121   158 0.86 Molybdopterin guanine dinucleotide synthesis protein B
AAA_25               PF13481.1    194 sp|P52052|YGGR_ECOLI -            326       0.1   11.9   2.4   1   1    0.0002      0.11   11.8   0.7    32    55   119   142   107   206 0.88 AAA domain
DAP3                 PF10236.4    309 sp|P52052|YGGR_ECOLI -            326      0.13   11.1   0.0   1   1   0.00043      0.24   10.2   0.0    22    46   119   143   111   173 0.76 Mitochondrial ribosomal death-associated protein 3
Zeta_toxin           PF06414.7    201 sp|P52052|YGGR_ECOLI -            326      0.14   11.2   0.0   1   1   0.00042      0.24   10.4   0.0    18    43   122   148   111   193 0.84 Zeta toxin
Miro                 PF08477.8    119 sp|P52052|YGGR_ECOLI -            326      0.15   12.5   0.0   1   1   0.00046      0.26   11.7   0.0     2    25   123   146   123   246 0.84 Miro-like protein
ResIII               PF04851.10   184 sp|P52052|YGGR_ECOLI -            326      0.17   11.7   0.0   1   1   0.00047      0.27   11.0   0.0    24    54   119   153    70   181 0.82 Type III restriction enzyme, res subunit
Kinesin              PF00225.18   335 sp|P52052|YGGR_ECOLI -            326      0.17   10.5   0.0   1   1   0.00044      0.25   10.0   0.0    65    94   110   139    98   177 0.85 Kinesin motor domain
Ala_racemase_N       PF01168.15   218 sp|P67080|YGGS_ECOLI -            234   3.8e-50  170.4   0.2   1   1   2.9e-54   4.3e-50  170.2   0.2     2   218     7   230     6   230 0.89 Alanine racemase, N-terminal domain
YGGT                 PF02325.12    75 sp|P64564|YGGT_ECOLI -            188   1.4e-41  140.2  21.6   1   2   8.4e-26   1.2e-21   76.3   4.3     1    73     8    80     8    82 0.97 YGGT family
YGGT                 PF02325.12    75 sp|P64564|YGGT_ECOLI -            188   1.4e-41  140.2  21.6   2   2   8.2e-24   1.2e-19   69.9   9.3     3    73   101   170    88   172 0.93 YGGT family
DUF167               PF02594.11    78 sp|P52060|YGGU_ECOLI -             96   6.8e-29   99.6   0.1   1   1   5.3e-33   7.8e-29   99.4   0.1     2    77     8    82     7    83 0.97 Uncharacterised ACR, YggU family COG1872
Radical_SAM          PF04055.16   166 sp|P52062|YGGW_ECOLI -            378   3.4e-17   63.1   0.0   1   1   1.5e-20   5.4e-17   62.4   0.0     2   158    11   175    10   180 0.79 Radical SAM superfamily
HemN_C               PF06969.11    66 sp|P52062|YGGW_ECOLI -            378   2.4e-07   30.7   0.0   1   1   1.5e-10   5.4e-07   29.5   0.0     3    66   304   366   302   366 0.92 HemN C-terminal domain
Fer4_14              PF13394.1    119 sp|P52062|YGGW_ECOLI -            378    0.0049   16.8   0.0   1   1   2.1e-06    0.0079   16.2   0.0     2    92    10   106     9   123 0.65 4Fe-4S single cluster domain
Fer4_12              PF13353.1    139 sp|P52062|YGGW_ECOLI -            378     0.042   13.9   0.0   1   1   2.3e-05     0.084   12.9   0.0    12    84    13    89     3   105 0.75 4Fe-4S single cluster domain
adh_short_C2         PF13561.1    241 sp|P0AG84|YGHA_ECOLI -            294   1.4e-30  106.8   0.0   1   1   5.6e-34   1.7e-30  106.5   0.0     5   239    58   290    55   292 0.92 Enoyl-(Acyl carrier protein) reductase
adh_short            PF00106.20   167 sp|P0AG84|YGHA_ECOLI -            294   3.6e-26   92.0   0.2   1   1   1.5e-29   4.5e-26   91.7   0.2     3   166    52   217    50   218 0.95 short chain dehydrogenase
KR                   PF08659.5    181 sp|P0AG84|YGHA_ECOLI -            294   2.5e-08   33.7   0.0   1   1   1.2e-11   3.4e-08   33.3   0.0     4   167    53   221    51   234 0.77 KR domain
Eno-Rase_NADH_b      PF12242.3     78 sp|P0AG84|YGHA_ECOLI -            294   0.00093   18.9   0.0   1   1     6e-07    0.0018   18.0   0.0    40    66    50    75    27    86 0.83 NAD(P)H binding domain of trans-2-enoyl-CoA reductase
Epimerase            PF01370.16   236 sp|P0AG84|YGHA_ECOLI -            294     0.098   12.0   0.1   1   1   8.7e-05      0.26   10.6   0.1     1   154    52   213    52   230 0.65 NAD dependent epimerase/dehydratase family
GspL_C               PF12693.2    158 sp|Q46833|YGHE_ECOLI -            286   5.7e-41  139.9   7.9   1   1   1.2e-44   8.9e-41  139.2   7.9     1   156   128   285   128   286 0.99 GspL periplasmic domain
T2SL                 PF05134.8    230 sp|Q46833|YGHE_ECOLI -            286   1.3e-21   76.8   0.7   1   1   3.3e-25   2.5e-21   75.9   0.7   109   230     2   124     1   124 0.97 Type II secretion system (T2SS), protein L
SNARE_assoc          PF09335.6    123 sp|P0AA60|YGHB_ECOLI -            219   3.6e-19   69.1   5.8   1   2   2.4e-23   3.6e-19   69.1   5.8     1   122    48   173    48   174 0.96 SNARE associated Golgi protein
Pilus_PilP           PF11356.3     87 sp|Q46834|YGHF_ECOLI -            288   5.4e-18   65.0   0.0   1   1   1.1e-21   5.4e-18   65.0   0.0     2    87    59   140    58   140 0.92 Type IV pilus biogenesis
PDZ_2                PF13180.1     82 sp|Q46834|YGHF_ECOLI -            288   7.2e-05   22.6   0.0   1   1   3.1e-08   0.00015   21.5   0.0    27    82   220   275   212   275 0.94 PDZ domain
PDZ                  PF00595.19    81 sp|Q46834|YGHF_ECOLI -            288     0.033   14.3   0.0   2   2   3.1e-05      0.15   12.2   0.0    37    80   219   262   203   263 0.86 PDZ domain (Also known as DHR or GLGF)
T2SM                 PF04612.7    160 sp|Q46832|YGHD_ECOLI -            178   4.6e-39  133.7   2.3   1   1   3.7e-43   5.5e-39  133.5   2.3     3   159    24   177    22   178 0.95 Type II secretion system (T2SS), protein M
GST_C_2              PF13410.1     69 sp|Q46845|YGHU_ECOLI -            288   1.6e-09   37.5   0.3   1   1   7.6e-13   1.6e-09   37.5   0.3     2    68   174   244   173   245 0.81 Glutathione S-transferase, C-terminal domain
GST_C                PF00043.20    95 sp|Q46845|YGHU_ECOLI -            288   6.7e-09   35.6   0.0   1   1   6.3e-12   1.3e-08   34.6   0.0    33    95   183   250   171   250 0.85 Glutathione S-transferase, C-terminal domain
GST_N_2              PF13409.1     70 sp|Q46845|YGHU_ECOLI -            288   1.8e-06   27.8   0.0   1   1     2e-09   4.2e-06   26.6   0.0     3    69    53   127    51   128 0.89 Glutathione S-transferase, N-terminal domain
GST_N                PF02798.15    76 sp|Q46845|YGHU_ECOLI -            288   3.2e-05   24.0   0.0   1   1   5.3e-08   0.00011   22.2   0.0    17    76    66   127    57   127 0.91 Glutathione S-transferase, N-terminal domain
GST_C_3              PF14497.1     99 sp|Q46845|YGHU_ECOLI -            288   3.4e-05   24.2   0.1   1   1     3e-08   6.4e-05   23.3   0.1    39    97   182   246   166   248 0.81 Glutathione S-transferase, C-terminal domain
GST_N_3              PF13417.1     75 sp|Q46845|YGHU_ECOLI -            288   9.2e-05   22.5   0.0   1   1   1.2e-07   0.00026   21.1   0.0     8    72    53   130    47   136 0.68 Glutathione S-transferase, N-terminal domain
Cuticle_2            PF08184.6     59 sp|Q46845|YGHU_ECOLI -            288     0.024   14.4   1.7   1   1   2.6e-05     0.054   13.2   1.7    30    48   151   169   145   174 0.90 Cuticle protein 7 isoform family
DUF1190              PF06693.6    165 sp|P0ADT2|YGIB_ECOLI -            223   6.8e-56  188.8  12.3   1   1   1.7e-59   8.4e-56  188.5  12.3     2   164    40   210    39   211 0.96 Protein of unknown function (DUF1190)
DUF1183              PF06682.7    319 sp|P0ADT2|YGIB_ECOLI -            223    0.0082   15.7   7.1   1   1   3.2e-06     0.016   14.8   7.1   192   284    48   159     3   220 0.59 Protein of unknown function (DUF1183)
DUF1482              PF07358.6     57 sp|P0ADT2|YGIB_ECOLI -            223      0.37   10.4   2.0   1   2   9.1e-05      0.45   10.1   0.1     5    33    28    57    25    68 0.88 Protein of unknown function (DUF1482)
GSP_synth            PF03738.9     97 sp|P0ADT5|YGIC_ECOLI -            386   3.5e-29  100.9   0.1   1   1   1.2e-32   8.6e-29   99.6   0.1     2    97   174   265   173   265 0.97 Glutathionylspermidine synthase preATP-grasp
CP_ATPgrasp_2        PF14403.1    445 sp|P0ADT5|YGIC_ECOLI -            386    0.0064   15.1   0.0   1   1   1.5e-06     0.011   14.4   0.0    50   141    40   131    27   139 0.91 Circularly permuted ATP-grasp type 2
LigB                 PF02900.13   272 sp|P24197|YGID_ECOLI -            262   1.2e-57  194.9   0.1   1   1   9.1e-62   1.4e-57  194.8   0.1     1   271     7   261     7   262 0.92 Catalytic LigB subunit of aromatic ring-opening dioxygenase
Radical_SAM_N        PF08497.5    302 sp|Q46861|YGIQ_ECOLI -            739  1.2e-153  510.3   0.0   1   2  8.3e-157  3.1e-153  509.0   0.0     1   302    29   379    29   379 0.99 Radical SAM N-terminal
DUF3362              PF11842.3    151 sp|Q46861|YGIQ_ECOLI -            739   3.6e-43  147.0   1.8   1   1   1.6e-46   5.9e-43  146.3   1.8     1   129   594   720   594   735 0.81 Domain of unknown function (DUF3362)
Radical_SAM          PF04055.16   166 sp|Q46861|YGIQ_ECOLI -            739     1e-20   74.5   0.0   2   2   2.2e-23   8.2e-20   71.6   0.1     1   165   380   585   380   586 0.93 Radical SAM superfamily
B12-binding          PF02310.14   121 sp|Q46861|YGIQ_ECOLI -            739    0.0026   17.6   0.0   1   2   0.00021      0.77    9.6   0.0     4    34    50    80    47   118 0.86 B12 binding domain
Fimbrial             PF00419.15   145 sp|P39834|YGIL_ECOLI -            183   7.6e-19   68.3   2.7   1   1   5.9e-23   8.8e-19   68.1   2.7     1   145    30   183    30   183 0.86 Fimbrial protein
SBP_bac_5            PF00496.17   374 sp|Q46863|YGIS_ECOLI -            535   1.8e-76  257.4   6.2   1   1   4.3e-80   3.2e-76  256.5   6.2     1   371    75   453    75   455 0.92 Bacterial extracellular solute-binding proteins, family 5 Middle
DUF2781              PF10914.3    150 sp|Q46863|YGIS_ECOLI -            535     0.012   15.3   0.2   1   1   3.1e-06     0.023   14.4   0.2    50   123   170   237   164   247 0.84 Protein of unknown function (DUF2781)
Trehalase            PF01204.13   512 sp|P42592|YGJK_ECOLI -            783   2.9e-12   45.9   0.2   1   1   1.9e-15     7e-12   44.7   0.2   180   485   414   761   408   770 0.85 Trehalase
DUF608               PF04685.8    365 sp|P42592|YGJK_ECOLI -            783     2e-07   30.0   0.4   1   2   1.2e-06    0.0043   15.8   0.1   109   155   423   470   395   508 0.89 Protein of unknown function, DUF608
DUF608               PF04685.8    365 sp|P42592|YGJK_ECOLI -            783     2e-07   30.0   0.4   2   2   1.5e-05     0.057   12.1   0.0   179   221   587   632   576   647 0.87 Protein of unknown function, DUF608
Glyco_hydro_63       PF03200.11   801 sp|P42592|YGJK_ECOLI -            783   3.1e-07   28.6   1.1   2   3   3.1e-07    0.0012   16.8   0.0   557   618   573   634   568   653 0.94 Mannosyl oligosaccharide glucosidase
Glyco_hydro_63       PF03200.11   801 sp|P42592|YGJK_ECOLI -            783   3.1e-07   28.6   1.1   3   3   4.1e-05      0.15    9.8   0.3   712   796   701   774   692   779 0.80 Mannosyl oligosaccharide glucosidase
Bac_rhamnosid        PF05592.6    509 sp|P42592|YGJK_ECOLI -            783   1.8e-06   26.4   2.5   2   2   3.4e-08   0.00013   20.3   0.2   276   327   576   627   570   637 0.85 Bacterial alpha-L-rhamnosidase
AA_permease_2        PF13520.1    426 sp|P42590|YGJI_ECOLI -            477   5.3e-37  127.3  63.2   1   1   8.6e-41   6.4e-37  127.0  63.2     2   418    10   434     9   449 0.85 Amino acid permease
AA_permease          PF00324.16   478 sp|P42590|YGJI_ECOLI -            477   8.1e-20   70.6  51.2   1   1   1.5e-23   1.1e-19   70.1  51.2    25   468    34   451    22   465 0.84 Amino acid permease
GFO_IDH_MocA         PF01408.17   120 sp|P42599|YGJR_ECOLI -            328     7e-28   97.5   0.1   1   1   2.3e-31   1.1e-27   96.8   0.1     1   117     2   118     2   121 0.97 Oxidoreductase family, NAD-binding Rossmann fold
Semialdhyde_dh       PF01118.19   121 sp|P42599|YGJR_ECOLI -            328    0.0081   16.4   0.0   1   1   4.6e-06     0.023   15.0   0.0     3    94     5    91     3   115 0.90 Semialdehyde dehydrogenase, NAD binding domain
F420_oxidored        PF03807.12    96 sp|P42599|YGJR_ECOLI -            328     0.011   16.1   0.0   1   1   6.6e-06     0.033   14.6   0.0     1    65     3    64     3    72 0.89 NADP oxidoreductase coenzyme F420-dependent
Pirin                PF02678.11   107 sp|P42624|YHAK_ECOLI -            233   2.2e-21   75.7   0.0   1   1   8.4e-25   4.2e-21   74.8   0.0     2   107     4   119     3   119 0.95 Pirin
Cupin_2              PF07883.6     71 sp|P42624|YHAK_ECOLI -            233    0.0041   16.5   0.0   1   2   7.5e-06     0.037   13.5   0.0     4    49    47    93    44   115 0.80 Cupin domain
Cupin_1              PF00190.17   144 sp|P42624|YHAK_ECOLI -            233     0.036   13.5   0.0   2   2    0.0002      0.99    8.8   0.0     1    42   174   214   174   221 0.90 Cupin
SDH_alpha            PF03313.10   283 sp|P42626|YHAM_ECOLI -            436   2.7e-73  246.4  14.7   2   2   5.4e-77   2.7e-73  246.4  14.7     4   281    52   429    48   433 0.97 Serine dehydratase alpha chain
Copper-fist          PF00649.13    40 sp|P42626|YHAM_ECOLI -            436     0.049   12.8   0.1   1   1   2.4e-05      0.12   11.5   0.1     3    18   134   149   133   157 0.91 Copper fist DNA binding domain
MmgE_PrpD            PF03972.9    445 sp|P42626|YHAM_ECOLI -            436      0.19    9.8   9.6   1   1     9e-05      0.44    8.6   9.6   108   226   283   398   279   432 0.80 MmgE/PrpD family
AA_permease_2        PF13520.1    426 sp|P42628|YHAO_ECOLI -            443   0.00039   19.0  46.4   1   1   7.2e-08   0.00053   18.6  46.4     7   400    41   436    38   443 0.68 Amino acid permease
Trp_Tyr_perm         PF03222.8    394 sp|P42628|YHAO_ECOLI -            443      0.15   10.8  29.8   1   1   3.6e-05      0.27   10.0  29.8    10   300    42   342    35   415 0.75 Tryptophan/tyrosine permease family
EamA                 PF00892.15   126 sp|P0AA73|YHBE_ECOLI -            321   3.4e-42  143.4  28.2   1   2   3.5e-29     1e-25   90.1   8.5     1   124    17   142    17   144 0.98 EamA-like transporter family
EamA                 PF00892.15   126 sp|P0AA73|YHBE_ECOLI -            321   3.4e-42  143.4  28.2   2   2   1.2e-19   3.6e-16   59.3  11.8     2   125   170   291   169   292 0.97 EamA-like transporter family
EmrE                 PF13536.1    113 sp|P0AA73|YHBE_ECOLI -            321   5.7e-10   39.3   6.8   1   2   1.9e-13   5.7e-10   39.3   6.8     3   103    41   141    39   147 0.94 Multidrug resistance efflux transporter
TPT                  PF03151.11   153 sp|P0AA73|YHBE_ECOLI -            321    0.0012   18.5   5.1   1   3     4e-07    0.0012   18.5   5.1    77   152    68   143     8   144 0.81 Triose-phosphate Transporter family
DUF914               PF06027.7    336 sp|P0AA73|YHBE_ECOLI -            321    0.0067   15.3   8.3   1   1   3.8e-06     0.011   14.5   8.2    41   203    32   193     3   297 0.75 Eukaryotic protein of unknown function (DUF914)
DUF423               PF04241.10    89 sp|P0AA73|YHBE_ECOLI -            321      0.16   11.9   5.9   1   2   6.1e-05      0.18   11.7   0.8    47    87    71   111    36   113 0.70 Protein of unknown function (DUF423)
DJ-1_PfpI            PF01965.19   147 sp|P45470|YHBO_ECOLI -            172   1.7e-42  144.3   0.0   1   1   8.1e-46     2e-42  144.1   0.0     1   147    31   171    31   171 0.97 DJ-1/PfpI family
DUF4066              PF13278.1    166 sp|P45470|YHBO_ECOLI -            172   4.4e-13   48.8   0.0   1   1   2.1e-16   5.3e-13   48.5   0.0     1   151     8   153     8   155 0.88 Putative amidotransferase
GATase               PF00117.23   192 sp|P45470|YHBO_ECOLI -            172   0.00029   20.3   0.0   1   1   1.3e-07   0.00033   20.1   0.0    27    87    52   112    12   153 0.77 Glutamine amidotransferase class-I
Peptidase_C26        PF07722.8    217 sp|P45470|YHBO_ECOLI -            172    0.0024   17.3   0.0   1   1   4.7e-06     0.012   15.1   0.0    97   159    88   150    51   158 0.72 Peptidase C26
GATase_3             PF07685.9    158 sp|P45470|YHBO_ECOLI -            172    0.0042   16.6   0.0   1   1   2.9e-06    0.0073   15.9   0.0     3    57    61   112    59   143 0.86 CobB/CobQ-like glutamine amidotransferase domain
SNO                  PF01174.14   188 sp|P45470|YHBO_ECOLI -            172     0.016   14.8   0.0   1   1   7.9e-06      0.02   14.5   0.0    32   100    64   131    31   152 0.74 SNO glutamine amidotransferase family
Pyridox_oxidase      PF01243.15    89 sp|P67762|YHBP_ECOLI -            147     0.064   13.2   0.0   1   1   6.7e-06     0.099   12.6   0.0    19    89    20    93     6    93 0.85 Pyridoxamine 5'-phosphate oxidase
GIY-YIG              PF01541.19    80 sp|P45472|YHBQ_ECOLI -            100   7.5e-10   39.0   0.0   1   1     6e-14     9e-10   38.7   0.0     2    76     4    73     3    77 0.91 GIY-YIG catalytic domain
Acetyltransf_9       PF13527.1    127 sp|P63417|YHBS_ECOLI -            167     1e-10   41.5   0.0   1   1   6.7e-14   1.4e-10   41.0   0.0     9   127    10   125     3   125 0.86 Acetyltransferase (GNAT) domain
Acetyltransf_1       PF00583.19    83 sp|P63417|YHBS_ECOLI -            167   1.1e-10   41.4   0.0   1   1   7.9e-14   1.7e-10   40.8   0.0     3    83    49   123    47   123 0.93 Acetyltransferase (GNAT) family
Acetyltransf_7       PF13508.1     79 sp|P63417|YHBS_ECOLI -            167   1.1e-06   28.7   0.0   1   1     9e-10   1.9e-06   27.9   0.0     6    78    45   123    43   124 0.74 Acetyltransferase (GNAT) domain
Acetyltransf_10      PF13673.1    117 sp|P63417|YHBS_ECOLI -            167   4.4e-05   23.5   0.0   1   1   3.2e-08   6.8e-05   22.9   0.0     1   117    10   122    10   122 0.71 Acetyltransferase (GNAT) domain
Acetyltransf_CG      PF14542.1     78 sp|P63417|YHBS_ECOLI -            167   9.4e-05   22.2   0.0   1   1   8.4e-08   0.00018   21.3   0.0     6    59    48   108    44   110 0.74 GCN5-related N-acetyl-transferase
Acetyltransf_3       PF13302.1    142 sp|P63417|YHBS_ECOLI -            167      0.01   15.9   0.0   1   1     7e-06     0.015   15.4   0.0    53   113    36   101    17   123 0.68 Acetyltransferase (GNAT) domain
FR47                 PF08445.5     86 sp|P63417|YHBS_ECOLI -            167     0.017   14.8   0.1   1   1   2.8e-05     0.058   13.1   0.0    24    81    74   126    67   133 0.79 FR47-like protein
Peptidase_U32        PF01136.14   233 sp|P45527|YHBU_ECOLI -            331   7.2e-62  208.3   0.0   1   1   1.2e-65   9.3e-62  207.9   0.0     3   232    76   330    74   331 0.94 Peptidase family U32
AP_endonuc_2         PF01261.19   213 sp|P45527|YHBU_ECOLI -            331     0.053   12.8   0.2   1   1   1.3e-05     0.093   12.0   0.2     2    91    14    95    13   147 0.76 Xylose isomerase-like TIM barrel
Sulfatase            PF00884.18   308 sp|P42640|YHBX_ECOLI -            541   4.3e-43  147.6   1.8   1   1   1.9e-46   5.8e-43  147.2   1.8     2   286   224   462   223   488 0.93 Sulfatase
DUF1705              PF08019.7    156 sp|P42640|YHBX_ECOLI -            541     0.004   16.6   6.3   1   1     3e-06    0.0088   15.5   6.3     4   116    45   161    38   177 0.61 Domain of unknown function (DUF1705)
DUF2585              PF10755.4    165 sp|P42640|YHBX_ECOLI -            541     0.076   12.4   1.2   1   1   6.9e-05      0.21   11.0   1.2    39   132    35   128    30   151 0.73 Protein of unknown function (DUF2585)
AIM24                PF01987.12   215 sp|P42640|YHBX_ECOLI -            541      0.11   11.9   0.0   1   1   7.5e-05      0.22   10.9   0.0   151   196   225   267   219   273 0.86 Mitochondrial biogenesis AIM24
DUF2109              PF09882.4     78 sp|P42640|YHBX_ECOLI -            541      0.23   11.4   2.9   1   2   0.00017      0.49   10.3   0.2    26    43    15    32     6    56 0.80 Predicted membrane protein (DUF2109)
PapD_N               PF00345.15   122 sp|P28722|YHCA_ECOLI -            224   2.1e-22   79.1   1.3   1   2   6.8e-26   3.4e-22   78.5   0.5     2   121    22   135    21   136 0.94 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_C               PF02753.12    68 sp|P28722|YHCA_ECOLI -            224   1.4e-05   24.8   1.7   1   1   4.5e-09   2.2e-05   24.1   0.8     1    64   154   216   154   220 0.91 Pili assembly chaperone PapD, C-terminal domain
FixG_C               PF11614.3    118 sp|P28722|YHCA_ECOLI -            224    0.0031   17.6   0.6   1   2   1.6e-06    0.0077   16.3   0.1    37   101    40   108    39   127 0.80 IG-like fold at C-terminal of FixG, putative oxidoreductase
Usher                PF00577.15   552 sp|P45420|YHCD_ECOLI -            793  1.4e-132  443.2  22.3   1   1  3.4e-136  1.7e-132  442.9  22.3     2   552   176   706   175   706 0.96 Outer membrane usher protein
PapC_N               PF13954.1    146 sp|P45420|YHCD_ECOLI -            793   1.8e-20   72.9   0.0   1   1   7.7e-24   3.8e-20   71.9   0.0     2   145    30   161    29   162 0.89 PapC N-terminal domain
PapC_C               PF13953.1     68 sp|P45420|YHCD_ECOLI -            793   5.6e-10   38.7   0.0   2   2     1e-12     5e-09   35.6   0.0     1    66   716   778   716   780 0.96 PapC C-terminal domain
DUF386               PF04074.7    153 sp|P45424|YHCH_ECOLI -            154   6.5e-54  181.5   0.0   1   1   9.8e-58   7.3e-54  181.4   0.0     1   152     1   150     1   151 0.99 Domain of unknown function (DUF386)
Cupin_2              PF07883.6     71 sp|P45424|YHCH_ECOLI -            154    0.0017   17.8   0.0   1   1   4.6e-07    0.0034   16.8   0.0    33    67   106   141   102   147 0.81 Cupin domain
Maf                  PF02545.9    195 sp|P25536|YHDE_ECOLI -            197   3.4e-71  238.4   0.0   1   1   2.7e-75     4e-71  238.1   0.0     2   194     3   191     2   192 0.98 Maf-like protein
Barstar              PF01337.13    90 sp|P64616|YHCO_ECOLI -             90   1.8e-19   69.3   0.4   1   1   2.8e-23   2.1e-19   69.1   0.4     1    84     4    82     4    87 0.96 Barstar (barnase inhibitor)
DUF3903              PF13043.1     40 sp|P64616|YHCO_ECOLI -             90      0.12   11.8   0.5   2   2   8.4e-05      0.62    9.5   0.4    18    35    63    80    51    84 0.89 Domain of unknown function (DUF3903)
DUF1471              PF07338.8     56 sp|P64614|YHCN_ECOLI -             87   7.2e-23   79.9   0.2   1   1   7.2e-27   1.1e-22   79.4   0.2     2    56    34    87    33    87 0.97 Protein of unknown function (DUF1471)
N6_N4_Mtase          PF01555.13   231 sp|P28638|YHDJ_ECOLI -            294   5.6e-54  183.0   0.0   1   1   4.2e-57     7e-54  182.7   0.0     1   227    34   250    34   254 0.92 DNA methylase
Methyltransf_26      PF13659.1    117 sp|P28638|YHDJ_ECOLI -            294   5.2e-11   42.6   0.0   1   2   1.6e-08   2.6e-05   24.2   0.0    53   114    16    85     8    88 0.73 Methyltransferase domain
Methyltransf_26      PF13659.1    117 sp|P28638|YHDJ_ECOLI -            294   5.2e-11   42.6   0.0   2   2   4.2e-06     0.007   16.3   0.0     2    46   216   259   215   289 0.80 Methyltransferase domain
Cons_hypoth95        PF03602.10   183 sp|P28638|YHDJ_ECOLI -            294   2.5e-06   27.0   0.0   1   2   5.3e-07   0.00087   18.7   0.0    89   140     9    59     2    93 0.77 Conserved hypothetical protein 95
Methyltransf_31      PF13847.1    152 sp|P28638|YHDJ_ECOLI -            294   0.00012   21.7   0.0   1   2   1.1e-05     0.018   14.6   0.0    57   112    16    88     9   131 0.80 Methyltransferase domain
MethyltransfD12      PF02086.10   260 sp|P28638|YHDJ_ECOLI -            294     0.012   15.1   0.0   1   2   9.8e-05      0.16   11.3   0.0   172   228    28    83     8   107 0.68 D12 class N6 adenine-specific DNA methyltransferase
RsmJ                 PF04378.8    245 sp|P28638|YHDJ_ECOLI -            294      0.11   11.5   0.0   1   1   9.3e-05      0.15   11.0   0.0   107   151    17    59     8    96 0.81 Ribosomal RNA small subunit methyltransferase D, RsmJ
BPD_transp_1         PF00528.17   185 sp|P45768|YHDY_ECOLI -            367   3.5e-26   91.8  11.3   3   3   2.4e-30   3.5e-26   91.8  11.3     2   183   174   360   173   362 0.94 Binding-protein-dependent transport system inner membrane component
SBP_bac_3            PF00497.15   225 sp|P45766|YHDW_ECOLI -            341   1.2e-33  116.2   0.0   1   1   2.4e-37   1.8e-33  115.6   0.0     2   211    38   251    37   256 0.91 Bacterial extracellular solute-binding proteins, family 3
NMT1                 PF09084.6    216 sp|P45766|YHDW_ECOLI -            341    0.0011   18.5   0.0   2   2   3.5e-07    0.0026   17.3   0.0    40   145    95   196    78   215 0.77 NMT1/THI5 like
ABC_tran             PF00005.22   137 sp|P45769|YHDZ_ECOLI -            252     1e-37  129.5   0.0   1   1   2.7e-40   1.3e-37  129.1   0.0     1   137    28   176    28   176 0.92 ABC transporter
AAA_21               PF13304.1    303 sp|P45769|YHDZ_ECOLI -            252   6.5e-11   42.7   0.0   1   2   2.6e-05     0.013   15.5   0.0     3    38    42    75    41    96 0.73 AAA domain
AAA_21               PF13304.1    303 sp|P45769|YHDZ_ECOLI -            252   6.5e-11   42.7   0.0   2   2   2.6e-08   1.2e-05   25.4   0.0   235   298   146   206   116   209 0.87 AAA domain
SMC_N                PF02463.14   220 sp|P45769|YHDZ_ECOLI -            252   2.6e-05   23.5   0.0   1   1   1.2e-06   0.00058   19.1   0.0    27   205    41   213    22   225 0.70 RecF/RecN/SMC N terminal domain
AAA_29               PF13555.1     62 sp|P45769|YHDZ_ECOLI -            252   0.00046   19.6   0.0   1   1   1.7e-06   0.00081   18.8   0.0    12    40    25    55    15    61 0.70 P-loop containing region of AAA domain
T2SE                 PF00437.15   272 sp|P45769|YHDZ_ECOLI -            252    0.0012   17.8   0.0   1   1   4.2e-06     0.002   17.0   0.0   117   181    27    89     6    97 0.75 Type II/IV secretion system protein
AAA_16               PF13191.1    185 sp|P45769|YHDZ_ECOLI -            252    0.0018   18.3   0.1   1   1   5.8e-06    0.0028   17.6   0.1    22    54    36    69    24   144 0.85 AAA ATPase domain
AAA_33               PF13671.1    143 sp|P45769|YHDZ_ECOLI -            252    0.0022   17.8   0.0   1   1   7.4e-06    0.0036   17.1   0.0     2    28    41    71    41   145 0.78 AAA domain
AAA_22               PF13401.1    131 sp|P45769|YHDZ_ECOLI -            252    0.0023   18.0   0.1   1   1   8.4e-06     0.004   17.2   0.1     7    29    41    63    36   210 0.88 AAA domain
AAA_10               PF12846.2    304 sp|P45769|YHDZ_ECOLI -            252     0.003   17.0   0.0   1   2   5.9e-05     0.028   13.8   0.0     5    33    42    70    40    82 0.80 AAA-like domain
DUF258               PF03193.11   161 sp|P45769|YHDZ_ECOLI -            252    0.0031   16.7   0.0   1   1   9.4e-06    0.0045   16.1   0.0    27    65    29    68     9    97 0.79 Protein of unknown function, DUF258
AAA_23               PF13476.1    202 sp|P45769|YHDZ_ECOLI -            252    0.0034   17.7   0.0   1   1     1e-05    0.0049   17.2   0.0     2    41    13    60    13    93 0.76 AAA domain
AAA_15               PF13175.1    415 sp|P45769|YHDZ_ECOLI -            252    0.0053   15.8   0.0   2   2    0.0013       0.6    9.0   0.0   371   411   167   206   154   210 0.85 AAA ATPase domain
DAP3                 PF10236.4    309 sp|P45769|YHDZ_ECOLI -            252    0.0055   15.6   0.0   1   2    0.0008      0.38    9.6   0.0    20    40    35    55    18    78 0.82 Mitochondrial ribosomal death-associated protein 3
AAA_19               PF13245.1     76 sp|P45769|YHDZ_ECOLI -            252    0.0071   16.0   0.0   1   1   3.2e-05     0.015   15.0   0.0     7    37    35    64    30    72 0.75 Part of AAA domain
AAA_18               PF13238.1    129 sp|P45769|YHDZ_ECOLI -            252    0.0093   16.2   0.2   1   1   8.6e-05     0.041   14.1   0.3     1    28    41    72    41    99 0.67 AAA domain
Zeta_toxin           PF06414.7    201 sp|P45769|YHDZ_ECOLI -            252     0.011   14.8   0.0   1   1   3.8e-05     0.018   14.1   0.0    19    65    41    88    27   100 0.82 Zeta toxin
DUF815               PF05673.8    250 sp|P45769|YHDZ_ECOLI -            252     0.011   14.6   0.0   1   1   3.3e-05     0.016   14.1   0.0    49   112    34   100    10   102 0.75 Protein of unknown function (DUF815)
AAA_28               PF13521.1    163 sp|P45769|YHDZ_ECOLI -            252     0.014   15.3   0.0   1   1   0.00018     0.084   12.8   0.0     1    24    40    68    40    85 0.79 AAA domain
Rad17                PF03215.10   519 sp|P45769|YHDZ_ECOLI -            252     0.015   13.9   0.2   1   1   5.9e-05     0.028   13.1   0.1    36    67    29    60    14   107 0.80 Rad17 cell cycle checkpoint protein
AAA_30               PF13604.1    196 sp|P45769|YHDZ_ECOLI -            252     0.016   14.8   0.0   1   1   6.2e-05      0.03   13.9   0.0    16    51    37    71    23    77 0.80 AAA domain
Mg_chelatase         PF01078.16   207 sp|P45769|YHDZ_ECOLI -            252     0.024   13.8   0.0   1   1    0.0001      0.05   12.7   0.0     6    45    22    61    17    96 0.89 Magnesium chelatase, subunit ChlI
SbcCD_C              PF13558.1     90 sp|P45769|YHDZ_ECOLI -            252     0.026   14.4   0.1   1   1   0.00026      0.12   12.2   0.1    63    88   165   190   134   191 0.82 Putative exonuclease SbcCD, C subunit
MobB                 PF03205.9    140 sp|P45769|YHDZ_ECOLI -            252      0.03   14.0   0.0   1   1   0.00012     0.055   13.1   0.0     2    26    40    63    39    78 0.79 Molybdopterin guanine dinucleotide synthesis protein B
AAA_17               PF13207.1    121 sp|P45769|YHDZ_ECOLI -            252     0.031   15.1   1.5   1   1   0.00018     0.086   13.6   1.5     1    17    40    56    40   104 0.90 AAA domain
RNA_helicase         PF00910.17   107 sp|P45769|YHDZ_ECOLI -            252     0.063   13.4   0.0   1   1    0.0005      0.24   11.5   0.0     1    30    41    65    41    84 0.77 RNA helicase
DEAD                 PF00270.24   169 sp|P45769|YHDZ_ECOLI -            252     0.069   12.6   0.0   1   1   0.00019      0.09   12.2   0.0     8    81    31   206    26   248 0.81 DEAD/DEAH box helicase
ABC_ATPase           PF09818.4    448 sp|P45769|YHDZ_ECOLI -            252     0.074   11.6   0.0   1   1   0.00085      0.41    9.1   0.0   322   412   147   221   138   245 0.75 Predicted ATPase of the ABC class
G-alpha              PF00503.15   389 sp|P45769|YHDZ_ECOLI -            252     0.085   11.5   0.0   1   1   0.00029      0.14   10.8   0.0    60    82    40    62    34    97 0.85 G-protein alpha subunit
Miro                 PF08477.8    119 sp|P45769|YHDZ_ECOLI -            252     0.091   13.2   0.0   1   1   0.00034      0.16   12.4   0.0     1    47    40    85    40   101 0.77 Miro-like protein
Adeno_IVa2           PF02456.10   370 sp|P45769|YHDZ_ECOLI -            252      0.12   10.9   0.0   1   1   0.00041      0.19   10.3   0.0    63   107    14    58     2    65 0.77 Adenovirus IVa2 protein
BPD_transp_1         PF00528.17   185 sp|P45767|YHDX_ECOLI -            393     7e-16   58.2  32.2   2   2   1.5e-18   1.1e-14   54.3  26.1     2   183   103   388   102   390 0.88 Binding-protein-dependent transport system inner membrane component
ABC_tran             PF00005.22   137 sp|P63389|YHES_ECOLI -            637   6.1e-50  169.0   6.9   1   2   6.7e-25   2.3e-22   79.7   0.0     1   137    17   178    17   178 0.70 ABC transporter
ABC_tran             PF00005.22   137 sp|P63389|YHES_ECOLI -            637   6.1e-50  169.0   6.9   2   2   6.8e-28   2.3e-25   89.4   0.0     1   137   328   459   328   459 0.89 ABC transporter
ABC_tran_2           PF12848.2     85 sp|P63389|YHES_ECOLI -            637   7.4e-29   99.4   4.2   1   1   2.2e-31   7.4e-29   99.4   4.2     1    83   217   298   217   302 0.93 ABC transporter
AAA_21               PF13304.1    303 sp|P63389|YHES_ECOLI -            637   1.5e-20   74.3   8.4   1   4   0.00036      0.12   12.3   0.1     3    20    31    48    30    68 0.83 AAA domain
AAA_21               PF13304.1    303 sp|P63389|YHES_ECOLI -            637   1.5e-20   74.3   8.4   2   4   1.7e-08   5.9e-06   26.4   0.1   224   302   137   209    79   210 0.83 AAA domain
AAA_21               PF13304.1    303 sp|P63389|YHES_ECOLI -            637   1.5e-20   74.3   8.4   3   4    0.0001     0.035   14.0   0.6     3    21   342   360   341   382 0.86 AAA domain
AAA_21               PF13304.1    303 sp|P63389|YHES_ECOLI -            637   1.5e-20   74.3   8.4   4   4   9.4e-08   3.2e-05   24.0   0.0   220   302   414   490   370   491 0.81 AAA domain
SMC_N                PF02463.14   220 sp|P63389|YHES_ECOLI -            637   4.8e-09   35.7   1.3   4   4   7.3e-05     0.024   13.8   0.0   136   210   430   499   381   506 0.85 RecF/RecN/SMC N terminal domain
AAA_17               PF13207.1    121 sp|P63389|YHES_ECOLI -            637   5.7e-08   33.6   8.6   1   3   0.00011     0.037   14.8   0.0     1    57    29    90    29   145 0.60 AAA domain
AAA_17               PF13207.1    121 sp|P63389|YHES_ECOLI -            637   5.7e-08   33.6   8.6   3   3    0.0018      0.62   10.8   3.5     1    32   340   392   340   573 0.75 AAA domain
AAA_29               PF13555.1     62 sp|P63389|YHES_ECOLI -            637   8.7e-07   28.3   1.3   1   2   4.7e-05     0.016   14.7   0.1    14    40    19    44    16    48 0.81 P-loop containing region of AAA domain
AAA_29               PF13555.1     62 sp|P63389|YHES_ECOLI -            637   8.7e-07   28.3   1.3   2   2   0.00034      0.11   11.9   0.1    26    40   341   355   329   361 0.86 P-loop containing region of AAA domain
MMR_HSR1             PF01926.18   116 sp|P63389|YHES_ECOLI -            637   2.4e-06   27.4   0.5   1   2   0.00097      0.33   10.9   0.0     1    22    29    50    29    72 0.84 50S ribosome-binding GTPase
MMR_HSR1             PF01926.18   116 sp|P63389|YHES_ECOLI -            637   2.4e-06   27.4   0.5   2   2   9.8e-05     0.033   14.1   0.1     1    38   340   376   340   503 0.82 50S ribosome-binding GTPase
DUF258               PF03193.11   161 sp|P63389|YHES_ECOLI -            637   7.2e-06   25.2   0.2   1   2   0.00069      0.23   10.6   0.0    36    60    28    52     5    79 0.84 Protein of unknown function, DUF258
DUF258               PF03193.11   161 sp|P63389|YHES_ECOLI -            637   7.2e-06   25.2   0.2   2   2   0.00022     0.074   12.2   0.0    29    66   331   369   313   391 0.79 Protein of unknown function, DUF258
Miro                 PF08477.8    119 sp|P63389|YHES_ECOLI -            637   9.1e-06   26.1   0.0   1   2    0.0007      0.23   11.9   0.0     1    51    29    91    29   122 0.61 Miro-like protein
Miro                 PF08477.8    119 sp|P63389|YHES_ECOLI -            637   9.1e-06   26.1   0.0   2   2    0.0012      0.39   11.2   0.0     1    25   340   364   340   397 0.85 Miro-like protein
AAA_25               PF13481.1    194 sp|P63389|YHES_ECOLI -            637   1.3e-05   24.7   3.1   1   2   0.00055      0.18   11.1   0.0    30    96    24   104    12   146 0.64 AAA domain
AAA_25               PF13481.1    194 sp|P63389|YHES_ECOLI -            637   1.3e-05   24.7   3.1   2   2   0.00022     0.073   12.4   0.0    30    82   335   393   324   484 0.70 AAA domain
KAP_NTPase           PF07693.9    325 sp|P63389|YHES_ECOLI -            637   1.8e-05   23.9   0.0   1   2   3.9e-05     0.013   14.4   0.0    18    48    25   149    14   292 0.63 KAP family P-loop domain
Dynamin_N            PF00350.18   168 sp|P63389|YHES_ECOLI -            637   5.4e-05   23.0   1.3   2   2   0.00015     0.049   13.4   0.0     1   147   341   496   341   507 0.74 Dynamin family
SbcCD_C              PF13558.1     90 sp|P63389|YHES_ECOLI -            637   0.00016   21.4   0.3   2   2   0.00012     0.041   13.8   0.0    26    88   424   473   408   475 0.80 Putative exonuclease SbcCD, C subunit
AAA_23               PF13476.1    202 sp|P63389|YHES_ECOLI -            637    0.0003   21.1  19.0   1   2    0.0024      0.82    9.9   0.2    24    37    32    45    17    48 0.85 AAA domain
AAA_23               PF13476.1    202 sp|P63389|YHES_ECOLI -            637    0.0003   21.1  19.0   2   2   6.8e-05     0.023   15.0   8.5    25   194   344   585   341   630 0.76 AAA domain
Val_tRNA-synt_C      PF10458.4     66 sp|P63389|YHES_ECOLI -            637    0.0005   20.0   1.5   1   1   1.5e-06    0.0005   20.0   1.5     3    29   561   587   559   615 0.93 Valyl tRNA synthetase tRNA binding arm
ArgK                 PF03308.11   267 sp|P63389|YHES_ECOLI -            637   0.00068   18.5   7.5   1   2   0.00029     0.099   11.4   0.1    16    57    14    55     8    59 0.87 ArgK protein
ArgK                 PF03308.11   267 sp|P63389|YHES_ECOLI -            637   0.00068   18.5   7.5   2   2   0.00092      0.31    9.7   0.1    26    54   335   363   319   371 0.80 ArgK protein
NACHT                PF05729.7    166 sp|P63389|YHES_ECOLI -            637   0.00077   19.1   3.2   1   2   0.00061      0.21   11.2   0.1     4    26    31    53    28    64 0.85 NACHT domain
ATP-synt_ab          PF00006.20   215 sp|P63389|YHES_ECOLI -            637    0.0018   17.8   0.7   1   2   0.00039      0.13   11.7   0.1     8    42    20    54    12    63 0.82 ATP synthase alpha/beta family, nucleotide-binding domain
AAA_13               PF13166.1    712 sp|P63389|YHES_ECOLI -            637    0.0024   16.4  18.6   1   3   0.00044      0.15   10.5   0.1     2    38    13    49    12    73 0.85 AAA domain
AAA_13               PF13166.1    712 sp|P63389|YHES_ECOLI -            637    0.0024   16.4  18.6   3   3    0.0027      0.91    7.8   5.9   399   467   516   584   496   630 0.73 AAA domain
FliD_N               PF02465.13    99 sp|P63389|YHES_ECOLI -            637     0.027   14.8   0.8   1   1   7.9e-05     0.027   14.8   0.8    17    58   235   276   212   285 0.90 Flagellar hook-associated protein 2 N-terminus
AAA_16               PF13191.1    185 sp|P63389|YHES_ECOLI -            637      0.03   14.3   0.1   1   2   8.8e-05      0.03   14.3   0.1    26    63    29    72    13   211 0.69 AAA ATPase domain
DUF87                PF01935.12   229 sp|P63389|YHES_ECOLI -            637     0.099   12.4  12.0   2   2    0.0017      0.58    9.9   0.1    24    48   339   363   328   371 0.85 Domain of unknown function DUF87
Fib_alpha            PF08702.5    146 sp|P63389|YHES_ECOLI -            637      0.99    9.5  10.3   2   2    0.0022      0.74    9.9   3.3    37   118   504   583   492   602 0.53 Fibrinogen alpha/beta chain family
Atg14                PF10186.4    302 sp|P63389|YHES_ECOLI -            637       3.2    6.6  25.5   2   2    0.0026      0.89    8.4  15.6    47   153   526   631   510   633 0.81 UV radiation resistance protein and autophagy-related subunit 14
DUF607               PF04678.8    180 sp|P63389|YHES_ECOLI -            637       3.2    7.6   6.3   1   1    0.0023      0.78    9.6   1.0    44    91   535   582   467   590 0.78 Protein of unknown function, DUF607
Abhydrolase_1        PF00561.15   230 sp|P45524|YHET_ECOLI -            340   3.6e-26   92.1   0.0   2   2   3.8e-29   9.4e-26   90.7   0.0     4   218   105   312   102   315 0.96 alpha/beta hydrolase fold
Abhydrolase_6        PF12697.2    228 sp|P45524|YHET_ECOLI -            340   2.3e-16   60.3   0.7   1   1   1.3e-19   3.3e-16   59.8   0.7     1   219    75   312    75   320 0.74 Alpha/beta hydrolase family
Abhydrolase_5        PF12695.2    145 sp|P45524|YHET_ECOLI -            340   1.4e-11   44.3   0.3   1   1   1.8e-14   4.6e-11   42.6   0.3     2   144    75   308    74   309 0.67 Alpha/beta hydrolase family
DUF2048              PF09752.4    348 sp|P45524|YHET_ECOLI -            340   3.4e-05   22.8   0.0   1   2   2.5e-06    0.0063   15.4   0.0   160   191   129   161   120   194 0.75 Uncharacterized conserved protein (DUF2048)
UPF0270              PF06794.7     70 sp|P67624|YHEU_ECOLI -             72     1e-35  121.3   0.1   1   1   1.5e-39   1.1e-35  121.2   0.1     1    70     1    70     1    70 0.99 Uncharacterised protein family (UPF0270)
DUF1895              PF08988.5     68 sp|P67624|YHEU_ECOLI -             72     0.052   13.5   0.0   1   1   7.7e-06     0.057   13.4   0.0    21    40    33    52    10    63 0.83 Protein of unknown function (DUF1895)
FUSC-like            PF12805.2    284 sp|P45537|YHFK_ECOLI -            700   3.3e-72  242.8   3.3   1   2   1.1e-75   3.3e-72  242.8   3.3     2   280    67   339    66   344 0.95 FUSC-like inner membrane protein yccS
FUSC_2               PF13515.1    128 sp|P45537|YHFK_ECOLI -            700   7.5e-20   71.1  11.0   1   1   2.5e-23   7.5e-20   71.1  11.0     1   126   380   502   379   504 0.90 Fusaric acid resistance protein-like
FUSC                 PF04632.7    650 sp|P45537|YHFK_ECOLI -            700   5.6e-08   31.7   4.2   1   1   1.9e-11   5.6e-08   31.7   4.2     7   280   373   663   367   694 0.80 Fusaric acid resistance protein family
ALMT                 PF11744.3    406 sp|P45537|YHFK_ECOLI -            700   1.6e-05   23.7   1.9   2   2   2.1e-08   6.3e-05   21.8   1.5    41   193   393   532   377   598 0.80 Aluminium activated malate transporter
DUF939               PF06081.6    141 sp|P45537|YHFK_ECOLI -            700     0.094   12.5   5.6   1   1   7.4e-05      0.22   11.3   5.6    14   135   378   502   373   503 0.82 Bacterial protein of unknown function (DUF939)
Metalloenzyme        PF01676.13   252 sp|P45549|YHFW_ECOLI -            408   8.8e-53  179.2   0.0   1   1   1.5e-56   1.1e-52  178.9   0.0     2   251     3   396     2   397 0.93 Metalloenzyme superfamily
Phosphodiest         PF01663.17   365 sp|P45549|YHFW_ECOLI -            408   7.5e-06   25.4   0.0   1   1   1.3e-09   9.6e-06   25.1   0.0   167   249   274   350   188   385 0.72 Type I phosphodiesterase / nucleotide pyrophosphatase
Transposase_31       PF04754.7    205 sp|P31667|YHGA_ECOLI -            292   6.2e-84  280.4   0.0   1   1   5.7e-88   8.4e-84  280.0   0.0     1   204     8   209     8   210 0.99 Putative transposase, YhgA-like
MarC                 PF01914.12   203 sp|P67143|YHGN_ECOLI -            197   6.6e-63  211.4  18.6   1   1   1.5e-66   7.4e-63  211.3  18.6     1   203     1   195     1   195 0.97 MarC family integral membrane protein
TerC                 PF03741.11   184 sp|P67143|YHGN_ECOLI -            197   3.9e-05   23.1   1.0   1   2     8e-09   3.9e-05   23.1   1.0    14    82    20    92     6   107 0.89 Integral membrane protein TerC family
ST7                  PF04184.7    540 sp|P67143|YHGN_ECOLI -            197     0.049   11.8   0.0   1   1   1.4e-05     0.071   11.3   0.0   466   512    95   144    83   158 0.74 ST7 protein
ABC2_membrane_3      PF12698.2    344 sp|P0AGH1|YHHJ_ECOLI -            374   8.5e-34  117.0  13.5   1   1   2.9e-37   1.1e-33  116.7  13.5    12   343    27   364    23   365 0.82 ABC-2 family transporter protein
ABC2_membrane        PF01061.19   210 sp|P0AGH1|YHHJ_ECOLI -            374   6.5e-28   97.3  13.5   1   1   1.8e-31   6.5e-28   97.3  13.5    24   210   137   336   117   336 0.84 ABC-2 type transporter
ABC2_membrane_2      PF12679.2    277 sp|P0AGH1|YHHJ_ECOLI -            374   1.8e-16   59.8   9.6   1   1   6.3e-20   2.3e-16   59.4   9.6     5   274    12   368     8   369 0.78 ABC-2 family transporter protein
ABC2_membrane_4      PF12730.2    232 sp|P0AGH1|YHHJ_ECOLI -            374   5.2e-11   42.1  10.6   1   1     2e-14   7.4e-11   41.6  10.6     4   231    15   360    12   364 0.65 ABC-2 family transporter protein
DDE_Tnp_1_assoc      PF13808.1     90 sp|P28912|YHHI_ECOLI -            378   1.1e-32  111.5   0.0   1   1     3e-36   2.2e-32  110.5   0.0     1    90     6    95     6    95 0.99 DDE_Tnp_1-associated
DDE_Tnp_1            PF01609.16   213 sp|P28912|YHHI_ECOLI -            378   4.7e-30  104.7   1.2   1   1   1.3e-33   9.5e-30  103.7   1.2     3   213   102   343   100   343 0.93 Transposase DDE domain
MFS_1                PF07690.11   352 sp|P37621|YHHS_ECOLI -            405   3.3e-28   98.4  63.9   1   3   2.6e-12   1.3e-08   33.9   8.8   213   306    19   116     3   118 0.77 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P37621|YHHS_ECOLI -            405   3.3e-28   98.4  63.9   2   3   1.6e-11   7.9e-08   31.3  31.1    67   271    98   279    97   286 0.82 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P37621|YHHS_ECOLI -            405   3.3e-28   98.4  63.9   3   3   3.4e-16   1.7e-12   46.7  19.7    36   182   255   399   253   405 0.88 Major Facilitator Superfamily
IF-2B                PF01008.12   282 sp|P37621|YHHS_ECOLI -            405      0.22   10.5   0.1   1   1     6e-05       0.3   10.0   0.1   178   209   261   290   251   309 0.87 Initiation factor 2 subunit family
MFS_3                PF05977.8    524 sp|P37621|YHHS_ECOLI -            405      0.32    9.0  27.0   2   2   1.2e-06    0.0058   14.8   7.6    95   194   295   393   278   404 0.62 Transmembrane secretion effector
UPF0118              PF01594.11   327 sp|P0AGM0|YHHT_ECOLI -            349   9.2e-80  268.0  38.9   1   1   6.9e-84     1e-79  267.9  38.9     2   326    14   328    13   329 0.99 Domain of unknown function DUF20
YhhN                 PF07947.9    185 sp|P0ADI9|YHHN_ECOLI -            208   2.4e-39  134.6  23.2   1   1     4e-43     3e-39  134.3  23.2     1   185    25   206    25   206 0.99 YhhN-like protein
MerC                 PF03203.9    116 sp|P0ADI9|YHHN_ECOLI -            208       7.1    7.0  11.7   2   2   0.00012      0.88    9.9   5.5    39   110   102   173    76   183 0.83 MerC mercury resistance protein
GFO_IDH_MocA         PF01408.17   120 sp|P46853|YHHX_ECOLI -            345   4.5e-27   94.9   0.0   1   1     2e-30   7.4e-27   94.2   0.0     1   117     3   120     3   123 0.96 Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C       PF02894.12   115 sp|P46853|YHHX_ECOLI -            345   7.3e-14   51.5   0.0   1   1   3.4e-17   1.2e-13   50.7   0.0     1   113   135   237   135   239 0.92 Oxidoreductase family, C-terminal alpha/beta domain
NAD_binding_3        PF03447.11   117 sp|P46853|YHHX_ECOLI -            345   6.3e-07   29.7   0.0   1   1   3.8e-10   1.4e-06   28.6   0.0    26   114    33   119    19   120 0.83 Homoserine dehydrogenase, NAD binding domain
Response_reg         PF00072.19   112 sp|P46853|YHHX_ECOLI -            345     0.093   12.7   0.0   1   1   4.7e-05      0.17   11.8   0.0    70   105    64   101    47   106 0.76 Response regulator receiver domain
Pirin                PF02678.11   107 sp|P46852|YHHW_ECOLI -            231   2.2e-36  123.9   0.4   1   1     9e-40   3.3e-36  123.3   0.4     5   107     7   119     3   119 0.94 Pirin
Cupin_2              PF07883.6     71 sp|P46852|YHHW_ECOLI -            231     2e-07   30.4   0.8   1   1   1.3e-10   4.7e-07   29.2   0.3     5    67    48   114    46   120 0.88 Cupin domain
Pirin_C              PF05726.8    104 sp|P46852|YHHW_ECOLI -            231    0.0012   18.9   0.0   2   2   0.00024      0.89    9.6   0.0     6    68   167   226   162   230 0.74 Pirin C-terminal cupin domain
DUF3412              PF11892.3    123 sp|P46852|YHHW_ECOLI -            231      0.11   12.2   0.0   1   1     5e-05      0.19   11.5   0.0    44    81   168   204   142   219 0.79 Domain of unknown function (DUF3412)
Acetyltransf_8       PF13523.1    152 sp|P46854|YHHY_ECOLI -            162   2.1e-15   56.9   0.2   1   1   1.4e-18   2.5e-15   56.6   0.2     1   141     6   141     6   148 0.87 Acetyltransferase (GNAT) domain
Acetyltransf_1       PF00583.19    83 sp|P46854|YHHY_ECOLI -            162   3.4e-15   55.8   0.0   1   1   2.9e-18   5.4e-15   55.1   0.0     2    83    57   137    53   137 0.93 Acetyltransferase (GNAT) family
Acetyltransf_4       PF13420.1    155 sp|P46854|YHHY_ECOLI -            162   4.1e-15   56.0   0.0   1   1   2.5e-18   4.7e-15   55.8   0.0     1   152     6   154     6   157 0.89 Acetyltransferase (GNAT) domain
Acetyltransf_3       PF13302.1    142 sp|P46854|YHHY_ECOLI -            162   9.4e-13   48.5   0.0   1   1   6.1e-16   1.1e-12   48.2   0.0     2   142     4   137     3   137 0.81 Acetyltransferase (GNAT) domain
Acetyltransf_10      PF13673.1    117 sp|P46854|YHHY_ECOLI -            162   6.6e-10   39.1   0.0   1   1   4.6e-13   8.6e-10   38.7   0.0     1   117    13   136    13   136 0.79 Acetyltransferase (GNAT) domain
Acetyltransf_7       PF13508.1     79 sp|P46854|YHHY_ECOLI -            162   2.4e-08   34.0   0.0   1   1     2e-11   3.7e-08   33.3   0.0     6    78    54   137    50   138 0.80 Acetyltransferase (GNAT) domain
FR47                 PF08445.5     86 sp|P46854|YHHY_ECOLI -            162   6.7e-06   25.7   0.0   1   1   5.7e-09   1.1e-05   25.1   0.0    26    79    83   138    72   145 0.94 FR47-like protein
Acetyltransf_9       PF13527.1    127 sp|P46854|YHHY_ECOLI -            162    0.0025   17.6   0.0   1   1   6.8e-06     0.013   15.3   0.0    43   126    53   138     5   139 0.60 Acetyltransferase (GNAT) domain
DUF796               PF05638.7    134 sp|P46855|YHHZ_ECOLI -            392   7.1e-22   77.8   0.1   1   1     3e-25   1.1e-21   77.2   0.1     1   133     6   139     6   140 0.91 Protein of unknown function (DUF796)
Colicin-DNase        PF12639.2    110 sp|P46855|YHHZ_ECOLI -            392   4.3e-05   23.7   0.1   2   2   4.8e-08   0.00018   21.7   0.0    39   104   271   349   245   355 0.78 DNase/tRNase domain of colicin-like bacteriocin
HNH                  PF01844.18    47 sp|P46855|YHHZ_ECOLI -            392    0.0018   18.0   0.1   1   1   1.1e-06    0.0042   16.9   0.1    13    36   320   343   312   345 0.88 HNH endonuclease
Churchill            PF06573.6    112 sp|P46855|YHHZ_ECOLI -            392      0.12   12.3   0.0   1   1   7.2e-05      0.27   11.2   0.0    41    76   114   149   106   161 0.84 Churchill protein
MgtC                 PF02308.11   135 sp|P0AFV2|YHID_ECOLI -            215   8.3e-48  161.6   9.8   1   1   1.6e-51   1.2e-47  161.1   9.8     1   128     9   136     9   143 0.96 MgtC family
Chordopox_L2         PF05803.7     87 sp|P0AFV2|YHID_ECOLI -            215    0.0042   16.6   0.3   1   1   1.4e-06      0.01   15.4   0.3    48    85   127   166   123   168 0.80 Chordopoxvirus L2 protein
Sugar_tr             PF00083.19   451 sp|P37643|YHJE_ECOLI -            440   1.5e-35  122.6  34.3   1   2   1.5e-31   7.5e-28   97.2   8.2     2   203    23   232    22   236 0.89 Sugar (and other) transporter
Sugar_tr             PF00083.19   451 sp|P37643|YHJE_ECOLI -            440   1.5e-35  122.6  34.3   2   2   6.6e-12   3.2e-08   32.5  17.6   244   443   242   439   227   440 0.70 Sugar (and other) transporter
MFS_1                PF07690.11   352 sp|P37643|YHJE_ECOLI -            440   2.2e-29  102.2  60.2   1   2   1.7e-20   8.4e-17   60.9  27.4     3   240    29   275    27   286 0.69 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P37643|YHJE_ECOLI -            440   2.2e-29  102.2  60.2   2   2   5.5e-16   2.7e-12   46.0  29.0    17   175   272   435   266   440 0.79 Major Facilitator Superfamily
MFS_2                PF13347.1    428 sp|P37643|YHJE_ECOLI -            440   8.7e-06   24.3  33.4   1   3   3.7e-05      0.18   10.1   2.5   267   327    67   131    19   141 0.75 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P37643|YHJE_ECOLI -            440   8.7e-06   24.3  33.4   2   3   1.8e-08   8.7e-05   21.0  14.4   136   342   157   372   147   382 0.72 MFS/sugar transport protein
Peptidase_M16_C      PF05193.16   184 sp|P37648|YHJJ_ECOLI -            498   6.4e-19   68.3   0.0   1   1   3.8e-22   1.9e-18   66.7   0.0     3   183   201   377   199   378 0.84 Peptidase M16 inactive domain
Peptidase_M16        PF00675.15   149 sp|P37648|YHJJ_ECOLI -            498   7.8e-07   28.9   0.0   1   1   3.9e-10   1.9e-06   27.6   0.0     2   123    46   169    45   190 0.86 Insulinase (Peptidase family M16)
Trp_Tyr_perm         PF03222.8    394 sp|P37660|YHJV_ECOLI -            423   6.7e-06   25.1  35.8   1   1   7.6e-10   1.1e-05   24.4  35.8     7   374    21   404    17   416 0.76 Tryptophan/tyrosine permease family
MFS_1                PF07690.11   352 sp|P37662|YHJX_ECOLI -            402   2.5e-32  111.9  43.6   1   2   3.5e-22   1.7e-18   66.4  15.1    12   225    26   231    11   253 0.78 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P37662|YHJX_ECOLI -            402   2.5e-32  111.9  43.6   2   2   2.3e-17   1.1e-13   50.6  26.2     4   170   221   384   218   400 0.81 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P37662|YHJX_ECOLI -            402   0.00067   18.3   4.0   1   3   1.4e-07   0.00067   18.3   4.0    19   123    15   121    12   133 0.81 Sugar (and other) transporter
DUF1430              PF07242.6    100 sp|P37662|YHJX_ECOLI -            402       3.9    7.6   8.0   1   1   4.2e-05      0.21   11.6   0.7    27    92   328   393   325   397 0.81 Protein of unknown function (DUF1430)
Acetyltransf_10      PF13673.1    117 sp|P37664|YIAC_ECOLI -            146   6.5e-14   52.0   0.0   1   1   5.1e-17   8.3e-14   51.7   0.0     7   117    12   120     8   120 0.81 Acetyltransferase (GNAT) domain
Acetyltransf_7       PF13508.1     79 sp|P37664|YIAC_ECOLI -            146   8.1e-13   48.3   0.1   1   1   6.6e-16   1.1e-12   47.9   0.1     3    78    48   121    46   122 0.92 Acetyltransferase (GNAT) domain
Acetyltransf_1       PF00583.19    83 sp|P37664|YIAC_ECOLI -            146   1.3e-12   47.5   0.1   1   1   1.3e-15   2.2e-12   46.8   0.1     1    83    53   121    53   121 0.97 Acetyltransferase (GNAT) family
FR47                 PF08445.5     86 sp|P37664|YIAC_ECOLI -            146   1.6e-05   24.5   0.0   1   1   1.5e-08   2.5e-05   23.9   0.0    20    80    67   123    50   128 0.84 FR47-like protein
Acetyltransf_8       PF13523.1    152 sp|P37664|YIAC_ECOLI -            146   0.00013   21.8   0.1   1   1   1.5e-07   0.00025   20.9   0.1    86   139    76   123    47   130 0.85 Acetyltransferase (GNAT) domain
Ribonuc_2-5A         PF06479.7    129 sp|P37664|YIAC_ECOLI -            146    0.0034   17.2   0.0   1   1   3.2e-06    0.0052   16.6   0.0    81   115    78   109    76   123 0.81 Ribonuclease 2-5A
Acetyltransf_9       PF13527.1    127 sp|P37664|YIAC_ECOLI -            146    0.0044   16.8   0.3   1   1   8.5e-05      0.14   12.0   0.3     2    96     2    92     1   123 0.73 Acetyltransferase (GNAT) domain
Acetyltransf_3       PF13302.1    142 sp|P37664|YIAC_ECOLI -            146     0.079   13.1   0.1   1   1   6.7e-05      0.11   12.6   0.1     4   141     2   120     1   121 0.71 Acetyltransferase (GNAT) domain
Acetyltransf_4       PF13420.1    155 sp|P37664|YIAC_ECOLI -            146     0.085   12.8   0.0   1   1   7.7e-05      0.13   12.2   0.0    93   137    81   123    50   129 0.86 Acetyltransferase (GNAT) domain
DUF386               PF04074.7    153 sp|P37673|YIAL_ECOLI -            155   9.8e-55  184.2   0.0   1   1   1.5e-58   1.1e-54  184.1   0.0     1   152     1   151     1   152 0.99 Domain of unknown function (DUF386)
DUF1889              PF08986.5    119 sp|P37673|YIAL_ECOLI -            155     0.047   13.8   0.0   1   1     1e-05     0.074   13.2   0.0    20    60    13    52     6    71 0.84 Domain of unknown function (DUF1889)
DctM                 PF06808.7    416 sp|P37675|YIAN_ECOLI -            425  3.5e-128  427.7  50.4   1   1  5.5e-132  4.1e-128  427.4  50.4     2   415     8   415     7   416 0.99 DctM-like transporters
CitMHS               PF03600.11   351 sp|P37675|YIAN_ECOLI -            425   3.5e-09   35.7  46.2   1   2   6.5e-07    0.0048   15.5  25.7    22   222    16   285     1   305 0.65 Citrate transporter
CitMHS               PF03600.11   351 sp|P37675|YIAN_ECOLI -            425   3.5e-09   35.7  46.2   2   2   1.5e-08   0.00011   20.8  17.6    86   191   309   411   275   415 0.83 Citrate transporter
MipA                 PF06629.7    226 sp|P37681|YIAT_ECOLI -            246   1.1e-73  247.3   1.8   1   1   8.8e-78   1.3e-73  247.1   1.8     2   226    24   246    23   246 0.99 MltA-interacting protein MipA
HlyD                 PF00529.15   305 sp|P37683|YIAV_ECOLI -            378   4.6e-59  200.2  13.1   1   1   2.5e-62   5.2e-59  200.0  13.1     2   305    64   349    63   349 0.98 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P37683|YIAV_ECOLI -            378   4.1e-11   43.1   0.6   2   2   1.7e-11   3.5e-08   33.7   0.0     2    80   222   301   221   335 0.87 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P37683|YIAV_ECOLI -            378   4.2e-09   35.9   0.9   1   2   2.7e-09   5.7e-06   25.9   0.2     4    49    65   110    61   113 0.92 Biotin-lipoyl like
HlyD_2               PF12700.2    328 sp|P37683|YIAV_ECOLI -            378   8.8e-09   34.9   0.2   1   1   7.4e-12   1.6e-08   34.1   0.2    26   240    68   301    63   319 0.74 HlyD family secretion protein
HAP1_N               PF04849.8    307 sp|P37683|YIAV_ECOLI -            378    0.0012   17.8   0.5   1   2   5.7e-07    0.0012   17.8   0.5   229   284    95   150    73   170 0.85 HAP1 N-terminal conserved region
LPP                  PF04728.8     56 sp|P37683|YIAV_ECOLI -            378     0.012   15.3   0.7   1   1   1.3e-05     0.028   14.2   0.7     2    46   100   147    99   156 0.90 Lipoprotein leucine-zipper
OmpA                 PF00691.15    97 sp|P37665|YIAD_ECOLI -            219   1.3e-23   83.2   0.1   1   1   1.1e-26     2e-23   82.6   0.1     1    97   115   210   115   210 0.97 OmpA family
Gly-zipper_Omp       PF13488.1     46 sp|P37665|YIAD_ECOLI -            219   1.3e-12   47.0  16.5   1   1   7.2e-16   1.3e-12   47.0  16.5     1    46    37    85    37    85 0.95 Glycine zipper
Gly-zipper_YMGG      PF13441.1     45 sp|P37665|YIAD_ECOLI -            219   7.8e-09   34.9  18.0   1   1   4.2e-12   7.8e-09   34.9  18.0     5    45    33    80    29    80 0.80 YMGG-like Gly-zipper
Rick_17kDa_Anti      PF05433.10    42 sp|P37665|YIAD_ECOLI -            219   2.1e-05   24.0  20.8   1   1   1.2e-08   2.1e-05   24.0  20.8     1    42    37    78    37    79 0.95 Glycine zipper 2TM domain
Gly-zipper_OmpA      PF13436.1    118 sp|P37665|YIAD_ECOLI -            219   0.00087   18.9  17.8   1   2   0.00011      0.21   11.2   5.7    62    99    18    57     7    60 0.71 Glycine-zipper containing OmpA-like membrane domain
Gly-zipper_OmpA      PF13436.1    118 sp|P37665|YIAD_ECOLI -            219   0.00087   18.9  17.8   2   2   6.4e-07    0.0012   18.5  15.5    48   100    31    86    20    95 0.72 Glycine-zipper containing OmpA-like membrane domain
Romo1                PF10247.4     67 sp|P37665|YIAD_ECOLI -            219     0.031   14.4   1.3   2   2   1.7e-05     0.031   14.4   1.3    10    53    62   104    57   108 0.93 Reactive mitochondrial oxygen species modulator 1
DUF456               PF04306.8    140 sp|P37665|YIAD_ECOLI -            219     0.034   14.1   1.0   1   1   3.6e-05     0.067   13.2   1.0    34    95     7    74     2    90 0.72 Protein of unknown function (DUF456)
DctQ                 PF04290.7    133 sp|P37674|YIAM_ECOLI -            157   1.3e-29  102.6   7.5   1   1   1.1e-33   1.7e-29  102.2   7.5     2   132    17   145    16   147 0.92 Tripartite ATP-independent periplasmic transporters, DctQ component
Glycos_transf_2      PF00535.21   169 sp|P11290|YIBD_ECOLI -            344   1.2e-35  122.7   0.2   1   1     7e-39   2.6e-35  121.5   0.1     1   130     9   137     9   184 0.92 Glycosyl transferase family 2
Glyco_tranf_2_3      PF13641.1    228 sp|P11290|YIBD_ECOLI -            344   3.6e-17   62.9   0.1   1   1   1.5e-20   5.5e-17   62.3   0.1     3   135     8   136     6   212 0.85 Glycosyltransferase like family 2
Glyco_tranf_2_2      PF10111.4    281 sp|P11290|YIBD_ECOLI -            344   5.5e-12   45.3   0.3   1   2   2.9e-15   1.1e-11   44.4   0.0     1   111     9   108     9   119 0.85 Glycosyltransferase like family 2
Glyco_tranf_2_4      PF13704.1     97 sp|P11290|YIBD_ECOLI -            344    0.0022   18.2   0.1   1   1     3e-06     0.011   15.9   0.1    21    82    37    96    29   127 0.78 Glycosyl transferase family 2
SBP_bac_7            PF03480.8    286 sp|P37676|YIAO_ECOLI -            328    1e-102  343.1   0.0   1   1  7.8e-107  1.2e-102  342.9   0.0     1   285    30   312    30   313 0.99 Bacterial extracellular solute-binding protein, family 7
HlyD                 PF00529.15   305 sp|P0AFV0|YIBH_ECOLI -            378   1.2e-59  202.1  14.6   1   1   1.4e-62   1.3e-59  201.9  14.6     3   305    65   349    63   349 0.99 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P0AFV0|YIBH_ECOLI -            378   2.2e-14   53.6   0.6   1   2   3.3e-06    0.0033   17.7   0.1     3    56    67   124    65   167 0.84 HlyD family secretion protein
HlyD_3               PF13437.1    105 sp|P0AFV0|YIBH_ECOLI -            378   2.2e-14   53.6   0.6   2   2   2.6e-11   2.5e-08   34.1   0.1     1    80   221   301   221   333 0.89 HlyD family secretion protein
HlyD_2               PF12700.2    328 sp|P0AFV0|YIBH_ECOLI -            378   2.9e-10   39.8   0.3   1   1   4.7e-13   4.6e-10   39.1   0.3    24   240    66   301    64   313 0.85 HlyD family secretion protein
Biotin_lipoyl_2      PF13533.1     50 sp|P0AFV0|YIBH_ECOLI -            378   3.5e-10   39.3   8.6   1   2   3.6e-12   3.5e-09   36.1   0.4     3    49    64   110    60   111 0.96 Biotin-lipoyl like
Biotin_lipoyl        PF00364.17    74 sp|P0AFV0|YIBH_ECOLI -            378   0.00098   18.7   0.2   1   2   0.00034      0.34   10.5   0.1    45    74    65    94    56    94 0.87 Biotin-requiring enzyme
WEMBL                PF05701.6    522 sp|P0AFV0|YIBH_ECOLI -            378    0.0013   17.2   2.0   1   1   1.9e-06    0.0019   16.7   2.0   171   298   100   218    92   224 0.80 Weak chloroplast movement under blue light
Kinetocho_Slk19      PF12709.2     87 sp|P0AFV0|YIBH_ECOLI -            378     0.056   13.5   1.5   1   1   0.00013      0.13   12.3   0.1    37    80    89   132    81   139 0.84 Central kinetochore-associated
THOC7                PF05615.8    139 sp|P0AFV0|YIBH_ECOLI -            378      0.17   12.1   5.7   1   2   0.00047      0.46   10.7   0.8    78   124    98   145    95   150 0.92 Tho complex subunit 7
CALCOCO1             PF07888.6    546 sp|P0AFV0|YIBH_ECOLI -            378      0.21    9.8   4.2   1   1   0.00036      0.36    9.0   4.2   163   256    93   191    69   225 0.64 Calcium binding and coiled-coil domain (CALCOCO1) like
PsbY                 PF06298.6     36 sp|P0AFV0|YIBH_ECOLI -            378       3.1    7.4   8.6   1   1   5.4e-05     0.054   13.0   1.4     6    34     4    30     1    32 0.83 Photosystem II protein Y (PsbY)
RHS                  PF03527.9     41 sp|P32109|YIBJ_ECOLI -            233     6e-21   73.9   1.9   1   2   4.1e-25     6e-21   73.9   0.4     1    41    48    88    48    88 0.98 RHS protein
GST_N_3              PF13417.1     75 sp|P0ACA1|YIBF_ECOLI -            202   5.6e-16   58.5   0.0   1   1     3e-19     9e-16   57.8   0.0     1    68     3    71     3    78 0.95 Glutathione S-transferase, N-terminal domain
GST_N_2              PF13409.1     70 sp|P0ACA1|YIBF_ECOLI -            202   2.9e-10   39.9   0.0   1   1   1.7e-13   4.9e-10   39.2   0.0     2    68     9    71     8    72 0.92 Glutathione S-transferase, N-terminal domain
GST_C                PF00043.20    95 sp|P0ACA1|YIBF_ECOLI -            202   1.4e-09   37.8   0.0   1   1   6.3e-13   1.9e-09   37.3   0.0     2    95    97   192    96   192 0.96 Glutathione S-transferase, C-terminal domain
GST_N                PF02798.15    76 sp|P0ACA1|YIBF_ECOLI -            202   1.5e-06   28.3   0.0   1   1   1.3e-09   3.8e-06   26.9   0.0    11    75    11    71     2    71 0.87 Glutathione S-transferase, N-terminal domain
GST_C_2              PF13410.1     69 sp|P0ACA1|YIBF_ECOLI -            202     0.007   16.2   0.0   1   1   3.8e-06     0.011   15.5   0.0     3    68   122   186    91   187 0.92 Glutathione S-transferase, C-terminal domain
UPF0126              PF03458.8     81 sp|P0AGM2|YICG_ECOLI -            205   1.6e-44  149.3  24.6   1   3   6.3e-25   4.7e-21   74.1   6.7     2    78     4    80     3    83 0.96 UPF0126 domain
UPF0126              PF03458.8     81 sp|P0AGM2|YICG_ECOLI -            205   1.6e-44  149.3  24.6   2   3   3.7e-28   2.7e-24   84.5   6.0     1    79    89   166    89   168 0.97 UPF0126 domain
DUF1212              PF06738.7    193 sp|P0AGM2|YICG_ECOLI -            205     0.091   12.2  12.2   2   2   2.7e-06      0.02   14.3   4.7   108   188    98   179    92   180 0.77 Protein of unknown function (DUF1212)
EamA                 PF00892.15   126 sp|P31437|YICL_ECOLI -            307   1.3e-35  122.1  40.0   1   2   1.8e-19   8.9e-16   58.0  13.7     1   126    16   145    16   145 0.85 EamA-like transporter family
EamA                 PF00892.15   126 sp|P31437|YICL_ECOLI -            307   1.3e-35  122.1  40.0   2   2     3e-23   1.5e-19   70.2  18.4     1   126   167   291   167   291 0.96 EamA-like transporter family
EmrE                 PF13536.1    113 sp|P31437|YICL_ECOLI -            307    0.0022   18.2   6.3   3   3   4.4e-07    0.0022   18.2   6.3    38   107   222   292   200   297 0.88 Multidrug resistance efflux transporter
QCR10                PF09796.4     64 sp|P31437|YICL_ECOLI -            307      0.13   11.9   1.9   2   2   5.6e-05      0.27   10.8   0.4     9    32   150   173   144   190 0.88 Ubiquinol-cytochrome-c reductase complex subunit (QCR10)
YicC_N               PF03755.8    159 sp|P23839|YICC_ECOLI -            287   2.8e-49  167.0   0.1   1   2   3.8e-53   2.8e-49  167.0   0.1     1   158     2   154     2   155 0.96 YicC-like family, N-terminal region
DUF1732              PF08340.6     87 sp|P23839|YICC_ECOLI -            287   2.1e-34  117.1   7.3   2   2   2.9e-38   2.1e-34  117.1   7.3     1    87   202   287   202   287 0.97 Domain of unknown function (DUF1732)
MFS_2                PF13347.1    428 sp|P31435|YICJ_ECOLI -            460  7.6e-129  429.8  38.7   1   1  5.8e-133  8.6e-129  429.6  38.7     1   427    10   431     9   432 0.97 MFS/sugar transport protein
RadC                 PF04002.10   123 sp|P25531|YICR_ECOLI -            222     7e-47  158.1   0.0   1   1   1.9e-50   9.4e-47  157.7   0.0     2   123   101   222   100   222 0.98 RadC-like JAB domain
Prok-JAB             PF14464.1    105 sp|P25531|YICR_ECOLI -            222    0.0025   17.3   0.0   1   1   7.1e-07    0.0035   16.8   0.0     4    88   106   203   103   219 0.68 Prokaryotic homologs of the JAB domain
HHH_2                PF12826.2     64 sp|P25531|YICR_ECOLI -            222     0.019   14.8   0.0   1   1   7.3e-06     0.036   13.9   0.0    15    44    44    73    42    80 0.93 Helix-hairpin-helix motif
Hydrolase_3          PF08282.7    254 sp|P0A8Y5|YIDA_ECOLI -            270   2.1e-66  224.0   0.0   1   1   1.1e-69   2.4e-66  223.9   0.0     1   254     6   264     6   264 0.95 haloacid dehalogenase-like hydrolase
S6PP                 PF05116.8    247 sp|P0A8Y5|YIDA_ECOLI -            270   5.9e-16   58.5   0.0   1   2     1e-08   2.2e-05   23.8   0.0     3    79     4    82     2   144 0.79 Sucrose-6F-phosphate phosphohydrolase
S6PP                 PF05116.8    247 sp|P0A8Y5|YIDA_ECOLI -            270   5.9e-16   58.5   0.0   2   2   1.9e-11   3.9e-08   32.8   0.0   144   214   175   244   155   268 0.80 Sucrose-6F-phosphate phosphohydrolase
Hydrolase            PF00702.21   215 sp|P0A8Y5|YIDA_ECOLI -            270   7.4e-09   36.3   1.4   1   1   1.6e-11   3.3e-08   34.1   1.4     1   215     3   232     3   232 0.64 haloacid dehalogenase-like hydrolase
HAD_2                PF13419.1    176 sp|P0A8Y5|YIDA_ECOLI -            270   6.7e-05   23.1   0.0   1   2   0.00041      0.87    9.7   0.0    77   124    20    67     7    80 0.84 Haloacid dehalogenase-like hydrolase
HAD_2                PF13419.1    176 sp|P0A8Y5|YIDA_ECOLI -            270   6.7e-05   23.1   0.0   2   2   0.00025      0.53   10.4   0.0   141   173   203   235   192   237 0.88 Haloacid dehalogenase-like hydrolase
Hydrolase_6          PF13344.1    101 sp|P0A8Y5|YIDA_ECOLI -            270   7.2e-05   22.6   0.0   1   2   6.4e-07    0.0014   18.5   0.0     1    52     6    58     6    75 0.85 Haloacid dehalogenase-like hydrolase
HAD                  PF12710.2    192 sp|P0A8Y5|YIDA_ECOLI -            270    0.0058   16.8   0.0   1   1   6.3e-05      0.13   12.3   0.0    88   191    23   228    15   229 0.74 haloacid dehalogenase-like hydrolase
Hydrolase_like       PF13242.1     75 sp|P0A8Y5|YIDA_ECOLI -            270     0.018   14.7   0.1   2   2   9.8e-05      0.21   11.3   0.0    13    37   204   227   158   236 0.73 HAD-hyrolase-like
YidC_periplas        PF14849.1    270 sp|P25714|YIDC_ECOLI -            548   2.8e-75  253.7   1.8   1   1   1.6e-78     4e-75  253.1   1.8     2   270    61   343    60   343 0.91 YidC periplasmic domain
60KD_IMP             PF02096.15   198 sp|P25714|YIDC_ECOLI -            548   3.5e-67  225.9  14.4   2   2   1.4e-70   3.5e-67  225.9  14.4     1   195   352   533   352   536 0.94 60Kd inner membrane protein
Sars6                PF12133.3     62 sp|P25714|YIDC_ECOLI -            548     0.099   12.3   0.0   1   1   9.2e-05      0.23   11.1   0.0    27    52   354   380   345   386 0.82 Open reading frame 6 from SARS coronavirus
DUF4352              PF11611.3    123 sp|P25714|YIDC_ECOLI -            548      0.29   11.2   1.7   1   2   0.00021      0.52   10.4   0.1    21    58   155   194   141   201 0.76 Domain of unknown function (DUF4352)
DUF2427              PF10348.4    105 sp|P25714|YIDC_ECOLI -            548      0.72    9.4   5.3   1   1   5.4e-05      0.13   11.8   0.9     5    50   481   526   478   533 0.88 Domain of unknown function (DUF2427)
TrbC                 PF04956.8     99 sp|P25714|YIDC_ECOLI -            548       1.6    8.8   5.1   2   3   0.00034      0.84    9.6   0.4    40    74   342   375   327   386 0.80 TrbC/VIRB2 family
Haemolytic           PF01809.13    68 sp|P0A8C8|YIDD_ECOLI -             85   3.3e-33  113.0   0.1   1   1   2.5e-37   3.8e-33  112.9   0.1     2    68     9    75     8    75 0.98 Haemolytic domain
Asp-Al_Ex            PF06826.7    169 sp|P60872|YIDE_ECOLI -            553   5.5e-92  305.8  44.8   1   2     9e-50   6.7e-46  155.8  22.1     2   168    11   179    10   180 0.99 Predicted Permease Membrane Region
Asp-Al_Ex            PF06826.7    169 sp|P60872|YIDE_ECOLI -            553   5.5e-92  305.8  44.8   2   2   7.4e-50   5.5e-46  156.1  14.7     2   168   374   546   373   547 0.98 Predicted Permease Membrane Region
TrkA_C               PF02080.16    71 sp|P60872|YIDE_ECOLI -            553   5.6e-20   70.7   4.0   1   2   1.3e-10   9.5e-07   28.3   0.1     8    68   212   272   206   275 0.85 TrkA-C domain
TrkA_C               PF02080.16    71 sp|P60872|YIDE_ECOLI -            553   5.6e-20   70.7   4.0   2   2   3.5e-15   2.6e-11   42.9   0.7     2    71   291   360   290   360 0.95 TrkA-C domain
Sulfatase            PF00884.18   308 sp|P31447|YIDJ_ECOLI -            497   2.5e-80  269.9   0.3   1   1   6.4e-84   3.1e-80  269.6   0.3     1   308     4   341     4   341 0.96 Sulfatase
Phosphodiest         PF01663.17   365 sp|P31447|YIDJ_ECOLI -            497     0.041   13.1   1.1   1   1   9.6e-05      0.48    9.6   1.2   212   245   255   287    22   307 0.55 Type I phosphodiesterase / nucleotide pyrophosphatase
Metalloenzyme        PF01676.13   252 sp|P31447|YIDJ_ECOLI -            497      0.11   11.8   0.0   1   1   3.9e-05      0.19   11.0   0.0   170   249   258   347   250   350 0.86 Metalloenzyme superfamily
SSF                  PF00474.12   406 sp|P31448|YIDK_ECOLI -            571   1.3e-50  172.2  22.8   1   2   1.7e-54   1.3e-50  172.2  22.8     1   405    35   442    35   443 0.86 Sodium:solute symporter family
CcmD                 PF04995.9     46 sp|P31448|YIDK_ECOLI -            571      0.53   10.0   4.9   3   3   5.8e-05      0.43   10.3   0.1    10    29   537   556   534   558 0.93 Heme exporter protein D (CcmD)
Glucosamine_iso      PF01182.15   199 sp|P31470|YIEK_ECOLI -            240   2.2e-16   60.2   0.0   1   1   2.9e-20   4.3e-16   59.2   0.0     5   198    12   206     9   207 0.77 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
HAD_2                PF13419.1    176 sp|P31467|YIEH_ECOLI -            221   9.2e-22   78.0   0.0   1   1   2.9e-25   1.1e-21   77.8   0.0     1   176     7   185     7   185 0.89 Haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P31467|YIEH_ECOLI -            221   2.7e-06   27.9   0.4   1   1   1.4e-07   0.00052   20.4   0.4     1   215     4   179     4   179 0.71 haloacid dehalogenase-like hydrolase
Hydrolase_like       PF13242.1     75 sp|P31467|YIEH_ECOLI -            221    0.0014   18.2   0.0   1   1   6.2e-07    0.0023   17.6   0.0     3    45   141   182   139   205 0.94 HAD-hyrolase-like
Mg_chelatase         PF01078.16   207 sp|P22787|YIFB_ECOLI -            506   1.6e-89  298.4   0.0   1   1   4.1e-92   2.9e-89  297.7   0.0     1   200   189   386   189   391 0.98 Magnesium chelatase, subunit ChlI
ChlI                 PF13541.1    121 sp|P22787|YIFB_ECOLI -            506   5.7e-45  151.7   0.1   1   1   1.3e-47   9.5e-45  151.0   0.1     1   121    21   142    21   142 0.96 Subunit ChlI of Mg-chelatase
Mg_chelatase_2       PF13335.1     96 sp|P22787|YIFB_ECOLI -            506   2.4e-32  111.1   0.3   1   1   9.4e-35   6.7e-32  109.7   0.3     2    96   400   492   399   492 0.99 Magnesium chelatase, subunit ChlI
AAA_5                PF07728.9    139 sp|P22787|YIFB_ECOLI -            506   1.3e-12   47.6   0.0   1   1   3.3e-15   2.3e-12   46.7   0.0     1   126   212   352   212   362 0.90 AAA domain (dynein-related subfamily)
MCM                  PF00493.18   331 sp|P22787|YIFB_ECOLI -            506   1.4e-12   47.0   0.0   2   2   1.1e-11     8e-09   34.7   0.0   114   202   287   383   271   493 0.78 MCM2/3/5 family
Sigma54_activat      PF00158.21   168 sp|P22787|YIFB_ECOLI -            506   4.8e-06   26.1   0.0   1   1   6.6e-08   4.7e-05   22.9   0.0    18   145   206   348   195   358 0.71 Sigma-54 interaction domain
AAA_19               PF13245.1     76 sp|P22787|YIFB_ECOLI -            506   2.1e-05   24.1   0.0   1   1   8.7e-08   6.1e-05   22.6   0.0     7    36   207   238   203   258 0.77 Part of AAA domain
AAA                  PF00004.24   132 sp|P22787|YIFB_ECOLI -            506   9.8e-05   22.5   0.1   1   1   6.7e-07   0.00047   20.3   0.0     1    38   213   268   213   346 0.62 ATPase family associated with various cellular activities (AAA)
AAA_16               PF13191.1    185 sp|P22787|YIFB_ECOLI -            506    0.0015   18.5   0.4   1   1   1.4e-05      0.01   15.8   0.1    20    46   206   235   196   274 0.70 AAA ATPase domain
IstB_IS21            PF01695.12   178 sp|P22787|YIFB_ECOLI -            506    0.0031   16.9   0.2   1   1   9.7e-06    0.0068   15.8   0.2    47    65   210   228   204   232 0.90 IstB-like ATP binding protein
AAA_32               PF13654.1    509 sp|P22787|YIFB_ECOLI -            506    0.0035   16.0   0.1   1   2   0.00036      0.26    9.9   0.0     6    50   189   230   183   235 0.80 AAA domain
RuvB_N               PF05496.7    234 sp|P22787|YIFB_ECOLI -            506    0.0042   16.1   0.0   1   2   5.7e-05     0.041   12.9   0.0    21    70   188   230   172   241 0.80 Holliday junction DNA helicase ruvB N-terminus
AAA_22               PF13401.1    131 sp|P22787|YIFB_ECOLI -            506    0.0043   17.1   0.0   1   1   3.9e-05     0.027   14.5   0.0     6    28   212   234   207   266 0.77 AAA domain
ResIII               PF04851.10   184 sp|P22787|YIFB_ECOLI -            506     0.017   14.9   0.0   1   1   4.4e-05     0.031   14.1   0.0    25    69   210   264   180   278 0.79 Type III restriction enzyme, res subunit
ABC_tran             PF00005.22   137 sp|P22787|YIFB_ECOLI -            506     0.044   14.0   0.0   1   1   0.00016      0.11   12.7   0.0     6    51   205   250   201   277 0.73 ABC transporter
AAA_33               PF13671.1    143 sp|P22787|YIFB_ECOLI -            506     0.052   13.4   0.0   1   1   0.00029      0.21   11.4   0.0     3    19   214   230   213   277 0.76 AAA domain
AAA_18               PF13238.1    129 sp|P22787|YIFB_ECOLI -            506     0.075   13.3   0.0   1   1   0.00037      0.26   11.6   0.0     2    42   214   254   213   283 0.80 AAA domain
Sigma54_activ_2      PF14532.1    138 sp|P22787|YIFB_ECOLI -            506     0.076   13.0   0.0   1   1    0.0013       0.9    9.5   0.0    13    41   202   230   196   330 0.87 Sigma-54 interaction domain
AAA_25               PF13481.1    194 sp|P22787|YIFB_ECOLI -            506     0.076   12.4   0.1   1   1   0.00032      0.22   10.8   0.1    33    51   210   228   203   232 0.87 AAA domain
DUF2075              PF09848.4    352 sp|P22787|YIFB_ECOLI -            506      0.11   11.4   0.0   1   1   0.00021      0.15   10.9   0.0     5    46   214   259   210   273 0.85 Uncharacterized conserved protein (DUF2075)
NACHT                PF05729.7    166 sp|P22787|YIFB_ECOLI -            506      0.12   11.9   0.0   1   1   0.00033      0.23   11.0   0.0     3    20   213   230   211   242 0.89 NACHT domain
DUF413               PF04219.7     94 sp|P0ADN2|YIFE_ECOLI -            112   1.7e-38  130.2   0.1   1   1   1.4e-42   2.1e-38  129.9   0.1     1    90    10    99    10   102 0.97 Protein of unknown function, DUF
AA_permease          PF00324.16   478 sp|P27837|YIFK_ECOLI -            461  8.6e-101  337.6  56.2   1   1  2.2e-104  1.1e-100  337.2  56.2     1   435    16   428    16   456 0.94 Amino acid permease
AA_permease_2        PF13520.1    426 sp|P27837|YIFK_ECOLI -            461   1.5e-43  148.9  59.1   1   1   4.1e-47     2e-43  148.5  59.1     9   425    20   440    15   441 0.88 Amino acid permease
DUF4097              PF13349.1    166 sp|P27837|YIFK_ECOLI -            461       5.8    6.4   8.5   1   2   0.00017      0.85    9.1   3.4     4    36   158   189   156   192 0.88 Domain of unknown function (DUF4097)
HAD_2                PF13419.1    176 sp|P0ADP0|YIGB_ECOLI -            238   2.1e-19   70.4   0.1   1   1   7.3e-23   2.7e-19   70.0   0.1     2   176    14   207    13   207 0.76 Haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P0ADP0|YIGB_ECOLI -            238   4.1e-09   37.1   0.0   1   1   1.6e-12   5.9e-09   36.6   0.0     1   213    10   199    10   201 0.73 haloacid dehalogenase-like hydrolase
Hydrolase_like       PF13242.1     75 sp|P0ADP0|YIGB_ECOLI -            238   4.9e-09   35.7   0.0   1   1   2.9e-12   1.1e-08   34.6   0.0     2    50   161   209   160   222 0.93 HAD-hyrolase-like
HAD                  PF12710.2    192 sp|P0ADP0|YIGB_ECOLI -            238      0.12   12.5   0.0   1   1   3.7e-05      0.14   12.3   0.0     3   112    15   135    13   187 0.65 haloacid dehalogenase-like hydrolase
UPF0029              PF01205.14   110 sp|P27862|YIGZ_ECOLI -            204     5e-37  125.9   0.0   1   1   1.3e-40   6.5e-37  125.5   0.0     1   109    17   125    17   126 0.98 Uncharacterized protein family UPF0029
DUF1949              PF09186.6     56 sp|P27862|YIGZ_ECOLI -            204   1.5e-15   56.5   0.0   1   1   6.1e-19     3e-15   55.5   0.0     1    55   141   195   141   196 0.98 Domain of unknown function (DUF1949)
EFG_C                PF00679.19    89 sp|P27862|YIGZ_ECOLI -            204   0.00011   21.9   0.0   1   1     4e-08    0.0002   21.1   0.0     5    68   135   196   133   200 0.96 Elongation factor G C-terminus
Hydrolase_3          PF08282.7    254 sp|P27848|YIGL_ECOLI -            266   3.6e-61  206.9   0.0   1   1   1.6e-64   4.1e-61  206.7   0.0     1   254     5   260     5   260 0.97 haloacid dehalogenase-like hydrolase
S6PP                 PF05116.8    247 sp|P27848|YIGL_ECOLI -            266   4.3e-16   58.9   0.0   1   2   8.1e-09     2e-05   24.0   0.0     4    75     4    73     1    91 0.89 Sucrose-6F-phosphate phosphohydrolase
S6PP                 PF05116.8    247 sp|P27848|YIGL_ECOLI -            266   4.3e-16   58.9   0.0   2   2   1.4e-11   3.4e-08   33.0   0.0   135   218   159   242   140   251 0.83 Sucrose-6F-phosphate phosphohydrolase
Hydrolase            PF00702.21   215 sp|P27848|YIGL_ECOLI -            266   2.3e-11   44.5   0.1   1   1   2.7e-13   6.8e-10   39.7   0.1     2   215     3   226     2   226 0.60 haloacid dehalogenase-like hydrolase
HAD                  PF12710.2    192 sp|P27848|YIGL_ECOLI -            266   3.1e-05   24.2   0.3   2   2   1.3e-06    0.0033   17.6   0.0   142   191    82   222    18   223 0.60 haloacid dehalogenase-like hydrolase
Hydrolase_6          PF13344.1    101 sp|P27848|YIGL_ECOLI -            266   3.2e-05   23.7   0.1   1   2   1.2e-07    0.0003   20.6   0.0     2    46     6    51     5    72 0.82 Haloacid dehalogenase-like hydrolase
Trehalose_PPase      PF02358.11   235 sp|P27848|YIGL_ECOLI -            266     0.016   14.1   0.0   2   2   0.00026      0.64    8.8   0.0   156   203   181   225   171   241 0.87 Trehalose-phosphatase
Acyltransferase      PF01553.16   132 sp|P32129|YIHG_ECOLI -            310   3.1e-14   52.5   0.0   1   1   5.9e-18   4.4e-14   52.0   0.0     3   117    84   218    82   238 0.82 Acyltransferase
DUF3600              PF12207.3    162 sp|P32129|YIHG_ECOLI -            310     0.081   12.4   0.0   1   1   1.6e-05      0.12   11.9   0.0    46   118   222   291   212   306 0.79 Domain of unknown function (DUF3600)
YihI                 PF04220.7    169 sp|P0A8H6|YIHI_ECOLI -            169   3.7e-56  189.0  15.5   1   1   2.8e-60   4.2e-56  188.9  15.5     3   167     5   165     2   167 0.94 Der GTPase activator (YihI)
MFS_1                PF07690.11   352 sp|P32135|YIHN_ECOLI -            421   3.5e-23   81.8  33.4   1   2   2.4e-27   3.5e-23   81.8  33.4    21   349    32   365    28   368 0.77 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P32135|YIHN_ECOLI -            421   3.5e-23   81.8  33.4   2   2   5.4e-06      0.08   11.6  14.1    46   173   269   407   269   419 0.78 Major Facilitator Superfamily
MFS_2                PF13347.1    428 sp|P32137|YIHP_ECOLI -            461  1.5e-101  339.9  26.8   1   1  2.2e-105  1.6e-101  339.7  26.8     2   428    18   444    17   444 0.97 MFS/sugar transport protein
MFS_1                PF07690.11   352 sp|P32137|YIHP_ECOLI -            461   1.2e-10   40.6  48.1   1   3   1.9e-06     0.014   14.0  12.4   223   348    35   169    13   171 0.80 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P32137|YIHP_ECOLI -            461   1.2e-10   40.6  48.1   2   3   1.5e-13   1.1e-09   37.5  31.2    70   349   101   388    95   391 0.74 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P32137|YIHP_ECOLI -            461   1.2e-10   40.6  48.1   3   3   2.2e-07    0.0017   17.1   8.9    57   176   302   444   297   458 0.84 Major Facilitator Superfamily
MFS_2                PF13347.1    428 sp|P32136|YIHO_ECOLI -            467  2.6e-102  342.3  36.5   1   1    4e-106    3e-102  342.2  36.5     2   427    16   437    14   438 0.97 MFS/sugar transport protein
MFS_1                PF07690.11   352 sp|P32136|YIHO_ECOLI -            467   2.5e-13   49.4  40.1   1   3   7.2e-08   0.00053   18.8   8.5   219   328    28   145    17   156 0.76 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P32136|YIHO_ECOLI -            467   2.5e-13   49.4  40.1   2   3   2.8e-09     2e-05   23.4   8.2    73   224   105   254    97   268 0.67 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P32136|YIHO_ECOLI -            467   2.5e-13   49.4  40.1   3   3   1.8e-10   1.3e-06   27.3  17.0     5   177   244   439   241   458 0.78 Major Facilitator Superfamily
HAD_2                PF13419.1    176 sp|P0A8Y3|YIHX_ECOLI -            199   2.5e-28   99.4   0.1   1   1   1.1e-31   2.8e-28   99.2   0.1     2   176     4   184     3   184 0.85 Haloacid dehalogenase-like hydrolase
Hydrolase_like       PF13242.1     75 sp|P0A8Y3|YIHX_ECOLI -            199   2.8e-08   33.3   0.0   1   1   2.6e-11   6.5e-08   32.1   0.0     2    50   139   186   138   197 0.93 HAD-hyrolase-like
Hydrolase            PF00702.21   215 sp|P0A8Y3|YIHX_ECOLI -            199   5.4e-07   30.2   0.0   1   1   2.6e-10   6.3e-07   30.0   0.0   114   214    57   177     6   178 0.71 haloacid dehalogenase-like hydrolase
Acid_PPase           PF12689.2    169 sp|P0A8Y3|YIHX_ECOLI -            199   2.2e-06   27.3   0.0   1   1   1.1e-08   2.8e-05   23.8   0.0    48   152    87   186    78   195 0.69 Acid Phosphatase
HAD                  PF12710.2    192 sp|P0A8Y3|YIHX_ECOLI -            199    0.0033   17.6   0.0   1   1   1.4e-06    0.0034   17.5   0.0    49   117    53   112     4   178 0.73 haloacid dehalogenase-like hydrolase
PNK3P                PF08645.6    159 sp|P0A8Y3|YIHX_ECOLI -            199     0.014   14.8   0.0   2   2   4.6e-05      0.11   11.8   0.0    24    75    79   130    61   173 0.80 Polynucleotide kinase 3 phosphatase
Glyco_hydro_31       PF01055.21   441 sp|P32138|YIHQ_ECOLI -            678   2.1e-98  330.0   3.5   1   1  3.7e-102   2.8e-98  329.6   3.5     9   439   233   666   226   668 0.93 Glycosyl hydrolases family 31
Gal_mutarotas_2      PF13802.1     68 sp|P32138|YIHQ_ECOLI -            678   2.4e-06   27.3   1.6   1   1   2.5e-09   1.8e-05   24.4   1.6     2    68   127   206   126   206 0.82 Galactose mutarotase-like
Virul_fac_BrkB       PF03631.10   260 sp|P0A8K8|YIHY_ECOLI -            290   1.1e-55  188.8  24.6   1   1   2.5e-59   1.2e-55  188.6  24.6     2   258    29   274    28   276 0.88 Virulence factor BrkB
CcmD                 PF04995.9     46 sp|P0A8K8|YIHY_ECOLI -            290      0.31   10.8   0.1   2   2   6.3e-05      0.31   10.8   0.1     6    42   252   288   244   289 0.91 Heme exporter protein D (CcmD)
DUF373               PF04123.8    344 sp|P0A8K8|YIHY_ECOLI -            290      0.53    9.2   8.1   1   1   6.1e-05       0.3   10.0   6.4   167   320    49   203    39   224 0.77 Domain of unknown function (DUF373)
RHH_1                PF01402.16    39 sp|P0ADQ5|YIIE_ECOLI -             70   3.5e-11   42.5   0.5   1   1   1.2e-14   5.8e-11   41.8   0.5     2    39     4    41     3    41 0.96 Ribbon-helix-helix protein, copG family
RHH_3                PF12651.2     44 sp|P0ADQ5|YIIE_ECOLI -             70   0.00025   20.7   0.2   1   1   7.2e-08   0.00036   20.2   0.2    10    43     9    42     6    43 0.90 Ribbon-helix-helix domain
DNA_Packaging_2      PF11123.3     82 sp|P0ADQ5|YIIE_ECOLI -             70     0.068   13.0   0.0   1   1   1.4e-05     0.068   13.0   0.0    28    54    26    52     4    70 0.74 DNA packaging protein
DUF406               PF04175.7     94 sp|P32162|YIIS_ECOLI -             99   2.2e-28   98.5   3.1   1   1   1.6e-32   2.4e-28   98.4   3.1     4    94     3    96     1    96 0.96 Protein of unknown function (DUF406)
EamA                 PF00892.15   126 sp|P0ABT8|YIJE_ECOLI -            301   9.9e-48  161.3  35.7   1   2   3.8e-25   1.4e-21   76.8  16.1     1   125    20   141    20   142 0.93 EamA-like transporter family
EamA                 PF00892.15   126 sp|P0ABT8|YIJE_ECOLI -            301   9.9e-48  161.3  35.7   2   2   1.8e-29   6.5e-26   90.8  11.6     1   125   162   289   162   290 0.98 EamA-like transporter family
EmrE                 PF13536.1    113 sp|P0ABT8|YIJE_ECOLI -            301   6.4e-07   29.5  34.3   1   2   7.1e-09   2.6e-05   24.3  13.0     2   104    43   140    42   143 0.89 Multidrug resistance efflux transporter
EmrE                 PF13536.1    113 sp|P0ABT8|YIJE_ECOLI -            301   6.4e-07   29.5  34.3   2   2     1e-05     0.037   14.2   9.0     3   104   189   288   185   295 0.74 Multidrug resistance efflux transporter
DUF3119              PF11317.3    117 sp|P0ABT8|YIJE_ECOLI -            301     0.077   13.0   0.6   1   1   2.1e-05     0.077   13.0   0.6     6    55   103   154    99   165 0.79 Protein of unknown function (DUF3119)
Acetyltransf_10      PF13673.1    117 sp|P09163|YJAB_ECOLI -            147   2.9e-12   46.7   0.0   1   1   2.1e-15   3.5e-12   46.4   0.0     5   117    16   122    13   122 0.79 Acetyltransferase (GNAT) domain
Acetyltransf_1       PF00583.19    83 sp|P09163|YJAB_ECOLI -            147   1.6e-10   40.8   0.0   1   1   2.8e-13   4.7e-10   39.3   0.0    27    83    72   123    56   123 0.89 Acetyltransferase (GNAT) family
Acetyltransf_7       PF13508.1     79 sp|P09163|YJAB_ECOLI -            147   1.2e-09   38.2   0.0   1   1   1.2e-12   1.9e-09   37.5   0.0     6    79    54   124    49   124 0.89 Acetyltransferase (GNAT) domain
FR47                 PF08445.5     86 sp|P09163|YJAB_ECOLI -            147   7.8e-05   22.3   0.0   1   1   1.5e-07   0.00025   20.7   0.0    23    80    72   125    65   130 0.84 FR47-like protein
Acetyltransf_6       PF13480.1    142 sp|P09163|YJAB_ECOLI -            147   8.4e-05   22.5   0.1   1   1   7.3e-08   0.00012   22.0   0.1    29   125    11   101     3   105 0.82 Acetyltransferase (GNAT) domain
Acetyltransf_8       PF13523.1    152 sp|P09163|YJAB_ECOLI -            147   0.00056   19.8   0.0   1   1   4.4e-07   0.00073   19.4   0.0    80   151    72   139    20   140 0.86 Acetyltransferase (GNAT) domain
Acetyltransf_4       PF13420.1    155 sp|P09163|YJAB_ECOLI -            147    0.0027   17.6   0.0   1   1   2.9e-06    0.0048   16.8   0.0    81   139    75   127    21   132 0.81 Acetyltransferase (GNAT) domain
Acetyltransf_3       PF13302.1    142 sp|P09163|YJAB_ECOLI -            147     0.061   13.4   0.0   1   1   4.7e-05     0.078   13.1   0.0    58   142    48   123     4   123 0.70 Acetyltransferase (GNAT) domain
Acetyltransf_CG      PF14542.1     78 sp|P09163|YJAB_ECOLI -            147      0.07   13.0   0.0   1   1   6.5e-05      0.11   12.4   0.0    25    53    73   101    58   119 0.88 GCN5-related N-acetyl-transferase
CsbD                 PF05532.7     53 sp|P68206|YJBJ_ECOLI -             69   1.7e-21   75.6   8.3   1   1   1.3e-25   1.9e-21   75.4   8.3     1    53     4    56     4    56 0.97 CsbD-like
UPF0047              PF01894.12   118 sp|P0AF48|YJBQ_ECOLI -            138   4.9e-39  132.8   0.0   1   1   3.7e-43   5.5e-39  132.6   0.0     1   117    17   135    17   136 0.97 Uncharacterised protein family UPF0047
Na_H_Exchanger       PF00999.16   380 sp|P32703|YJCE_ECOLI -            549   1.1e-73  247.9  45.5   1   1   1.9e-77   1.4e-73  247.6  45.5     4   379    10   421     5   422 0.91 Sodium/hydrogen exchanger family
Alkyl_sulf_dimr      PF14863.1    141 sp|P32717|YJCS_ECOLI -            661     5e-58  195.3   2.0   1   1     5e-61   1.1e-57  194.2   2.0     1   140   391   530   391   531 0.99 Alkyl sulfatase dimerisation
Lactamase_B          PF00753.22   194 sp|P32717|YJCS_ECOLI -            661   2.9e-38  131.4   0.2   1   1     2e-41   4.3e-38  130.9   0.2     2   194   130   355   129   355 0.99 Metallo-beta-lactamase superfamily
Alkyl_sulf_C         PF14864.1    125 sp|P32717|YJCS_ECOLI -            661   1.2e-33  115.7   0.3   1   1   1.1e-36   2.3e-33  114.8   0.3     2   125   539   660   538   660 0.97 Alkyl sulfatase C-terminal
Lactamase_B_2        PF12706.2    194 sp|P32717|YJCS_ECOLI -            661   0.00064   19.3   0.0   1   1   6.7e-07    0.0014   18.1   0.0    20    71   163   216   144   321 0.76 Beta-lactamase superfamily domain
SCP2                 PF02036.12   102 sp|P32717|YJCS_ECOLI -            661    0.0038   17.5   0.1   1   1   3.8e-06    0.0081   16.4   0.1    18    94   564   641   557   649 0.84 SCP-2 sterol transfer family
TPR_11               PF13414.1     69 sp|P32717|YJCS_ECOLI -            661    0.0099   15.5   1.0   1   1     3e-05     0.063   12.9   0.8     8    54   465   511   461   516 0.89 TPR repeat
TPR_16               PF13432.1     65 sp|P32717|YJCS_ECOLI -            661     0.036   14.7   1.4   1   1   5.7e-05      0.12   13.0   0.7     2    52   465   515   464   516 0.93 Tetratricopeptide repeat
AA_permease_2        PF13520.1    426 sp|P39282|YJEM_ECOLI -            500   1.9e-32  112.3  60.8   1   1   3.4e-36   2.5e-32  111.9  60.8     2   419     9   468     8   483 0.77 Amino acid permease
AA_permease          PF00324.16   478 sp|P39282|YJEM_ECOLI -            500   2.8e-14   52.3  52.4   1   1   2.6e-17     2e-13   49.5  52.4    16   449    23   466     9   490 0.71 Amino acid permease
BPD_transp_2         PF02653.11   267 sp|P37772|YJFF_ECOLI -            331   3.2e-44  150.8  43.6   1   1   3.4e-48     5e-44  150.2  43.6     2   266    35   304    34   305 0.88 Branched-chain amino acid transport system / permease component
GSP_synth            PF03738.9     97 sp|P33222|YJFC_ECOLI -            387   1.8e-25   88.9   0.0   1   1   1.8e-28   6.7e-25   87.1   0.0     2    97   172   263   171   263 0.92 Glutathionylspermidine synthase preATP-grasp
CP_ATPgrasp_2        PF14403.1    445 sp|P33222|YJFC_ECOLI -            387   0.00024   19.8   0.0   1   1   9.5e-08   0.00035   19.3   0.0    57   141    48   132    39   148 0.87 Circularly permuted ATP-grasp type 2
DEAD_assoc           PF08494.6    187 sp|P33222|YJFC_ECOLI -            387     0.029   14.0   0.0   2   2   2.1e-05     0.078   12.6   0.0    87   135   121   162   113   191 0.77 DEAD/H associated
DUF1471              PF07338.8     56 sp|P0AF82|YJFN_ECOLI -             91   1.6e-19   69.2   0.0   1   1   1.6e-23   2.3e-19   68.7   0.0     1    55    34    90    34    91 0.98 Protein of unknown function (DUF1471)
PspA_IM30            PF04012.7    221 sp|P0AF78|YJFJ_ECOLI -            232   4.7e-57  192.8  28.8   1   1   2.8e-60   5.2e-57  192.7  28.8     1   221     2   232     2   232 0.97 PspA/IM30 family
Reo_sigmaC           PF04582.7    326 sp|P0AF78|YJFJ_ECOLI -            232    0.0068   15.6   8.0   1   1     5e-06    0.0093   15.1   8.0    19   149    52   180    47   197 0.84 Reovirus sigma C capsid protein
Spc7                 PF08317.6    326 sp|P0AF78|YJFJ_ECOLI -            232     0.015   14.0  12.9   1   1   9.8e-06     0.018   13.7  12.0   162   266    29   145    17   181 0.73 Spc7 kinetochore protein
DELLA                PF12041.3     74 sp|P0AF78|YJFJ_ECOLI -            232     0.036   13.7   3.4   1   2   0.00035      0.65    9.6   0.1     5    41    79   114    76   124 0.81 Transcriptional regulator DELLA protein N terminal
APG6                 PF04111.7    315 sp|P0AF78|YJFJ_ECOLI -            232      0.27   10.2  13.7   2   2   6.7e-05      0.12   11.3   8.8    30   135    76   179    59   185 0.84 Autophagy protein Apg6
THOC7                PF05615.8    139 sp|P0AF78|YJFJ_ECOLI -            232       8.6    6.6  19.5   2   3   6.1e-05      0.11   12.7   2.1    61   110    96   145    88   150 0.94 Tho complex subunit 7
DUF350               PF03994.9     54 sp|P0AF80|YJFL_ECOLI -            132   1.7e-31  107.6  11.9   1   2   4.6e-22   3.4e-18   65.1   0.6     1    53    13    65    13    66 0.98 Domain of Unknown Function (DUF350)
DUF350               PF03994.9     54 sp|P0AF80|YJFL_ECOLI -            132   1.7e-31  107.6  11.9   2   2   1.7e-16   1.3e-12   47.2   4.9     1    54    78   130    78   130 0.99 Domain of Unknown Function (DUF350)
DUF4149              PF13664.1    101 sp|P0AF80|YJFL_ECOLI -            132    0.0065   16.5   7.2   1   2   7.8e-05      0.58   10.2   1.7    37    72     9    40     4    69 0.80 Domain of unknown function (DUF4149)
DUF615               PF04751.9    158 sp|P0A8X0|YJGA_ECOLI -            183   1.7e-58  196.7   9.9   1   1   5.4e-62     2e-58  196.5   9.9     2   158    22   177    19   177 0.98 Protein of unknown function (DUF615)
DUF982               PF06169.7     76 sp|P0A8X0|YJGA_ECOLI -            183     0.025   14.2   0.0   2   2   2.3e-05     0.085   12.6   0.0    21    64   130   173   112   178 0.84 Protein of unknown function (DUF982)
DUF2493              PF10686.4     71 sp|P0A8X0|YJGA_ECOLI -            183     0.043   13.3   0.1   1   1   2.4e-05     0.088   12.3   0.1    15    39    92   117    86   135 0.85 Protein of unknown function (DUF2493)
DUF1471              PF07338.8     56 sp|P0AF86|YJFY_ECOLI -             91   1.3e-21   75.9   0.2   1   1   2.4e-25   1.8e-21   75.5   0.2     2    56    35    91    34    91 0.98 Protein of unknown function (DUF1471)
Trypan_PARP          PF05887.6    143 sp|P0AF86|YJFY_ECOLI -             91     0.068   12.9   0.3   1   1   1.4e-05       0.1   12.3   0.2     1    25     1    25     1    40 0.81 Procyclic acidic repetitive protein (PARP)
Acetyltransf_1       PF00583.19    83 sp|P39337|YJGM_ECOLI -            167   1.5e-13   50.5   0.1   1   1   1.3e-16   2.2e-13   50.0   0.1     2    83    66   145    65   145 0.96 Acetyltransferase (GNAT) family
Acetyltransf_10      PF13673.1    117 sp|P39337|YJGM_ECOLI -            167   1.6e-11   44.3   0.0   1   1   1.2e-14   1.9e-11   44.0   0.0     1   117    18   144    18   144 0.84 Acetyltransferase (GNAT) domain
Acetyltransf_4       PF13420.1    155 sp|P39337|YJGM_ECOLI -            167   8.1e-11   42.1   0.0   1   1   6.1e-14     1e-10   41.8   0.0     2   137    12   147    11   153 0.86 Acetyltransferase (GNAT) domain
Acetyltransf_7       PF13508.1     79 sp|P39337|YJGM_ECOLI -            167   4.4e-10   39.5   0.1   1   1   4.3e-13   7.1e-10   38.9   0.1     3    78    60   145    58   146 0.83 Acetyltransferase (GNAT) domain
Acetyltransf_3       PF13302.1    142 sp|P39337|YJGM_ECOLI -            167   1.5e-06   28.3   0.0   1   1   1.2e-09     2e-06   28.0   0.0     4   142    11   145    10   145 0.75 Acetyltransferase (GNAT) domain
FR47                 PF08445.5     86 sp|P39337|YJGM_ECOLI -            167   3.3e-05   23.5   0.0   1   1   3.7e-08     6e-05   22.7   0.0    19    81    85   148    82   151 0.90 FR47-like protein
Acetyltransf_CG      PF14542.1     78 sp|P39337|YJGM_ECOLI -            167   3.8e-05   23.4   0.0   1   1   3.8e-08   6.2e-05   22.8   0.0    19    57    84   122    52   126 0.78 GCN5-related N-acetyl-transferase
Acetyltransf_9       PF13527.1    127 sp|P39337|YJGM_ECOLI -            167   0.00022   21.0   0.1   1   1   2.5e-07   0.00041   20.2   0.1    39   127    57   147    10   147 0.76 Acetyltransferase (GNAT) domain
Acetyltransf_8       PF13523.1    152 sp|P39337|YJGM_ECOLI -            167   0.00032   20.5   0.0   1   1   5.6e-07   0.00092   19.1   0.0     2   139    12   147    11   150 0.79 Acetyltransferase (GNAT) domain
Ribonuc_L-PSP        PF01042.16   121 sp|P39332|YJGH_ECOLI -            131   4.9e-32  110.2   0.0   1   1   3.7e-36   5.5e-32  110.0   0.0     3   120    13   127    11   128 0.95 Endoribonuclease L-PSP
Sugar_tr             PF00083.19   451 sp|P39352|YJHB_ECOLI -            405   3.5e-57  193.9  38.0   1   2   5.8e-40   1.7e-36  125.7  12.6     2   198    16   196    15   205 0.94 Sugar (and other) transporter
Sugar_tr             PF00083.19   451 sp|P39352|YJHB_ECOLI -            405   3.5e-57  193.9  38.0   2   2   1.1e-26   3.2e-23   82.0  17.4   214   437   185   395   184   401 0.95 Sugar (and other) transporter
MFS_1                PF07690.11   352 sp|P39352|YJHB_ECOLI -            405   8.7e-45  152.9  47.1   1   2   5.5e-36   1.6e-32  112.5  14.4     2   234    21   244    20   246 0.86 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P39352|YJHB_ECOLI -            405   8.7e-45  152.9  47.1   2   2   4.6e-18   1.4e-14   53.6  28.5     1   169   221   391   221   398 0.84 Major Facilitator Superfamily
MFS_2                PF13347.1    428 sp|P39352|YJHB_ECOLI -            405   1.6e-06   26.7  11.1   1   3     2e-05     0.058   11.7   7.4   246   334    35   122    13   132 0.82 MFS/sugar transport protein
MFS_2                PF13347.1    428 sp|P39352|YJHB_ECOLI -            405   1.6e-06   26.7  11.1   2   3   5.5e-10   1.6e-06   26.7  11.1   141   342   136   333   133   338 0.77 MFS/sugar transport protein
FPN1                 PF06963.7    432 sp|P39352|YJHB_ECOLI -            405     0.011   14.1  14.0   2   2   1.2e-06    0.0036   15.7   8.6   280   340   238   298   210   394 0.82 Ferroportin1 (FPN1)
GFO_IDH_MocA         PF01408.17   120 sp|P39353|YJHC_ECOLI -            372   8.5e-29  100.5   0.1   1   1   8.1e-32   1.3e-28   99.8   0.1     1   120     2   118     2   118 0.96 Oxidoreductase family, NAD-binding Rossmann fold
GFO_IDH_MocA_C       PF02894.12   115 sp|P39353|YJHC_ECOLI -            372   2.1e-21   75.8   0.0   1   1   2.5e-24   4.1e-21   74.9   0.0     1   114   130   241   130   242 0.97 Oxidoreductase family, C-terminal alpha/beta domain
Semialdhyde_dh       PF01118.19   121 sp|P39353|YJHC_ECOLI -            372   2.6e-07   30.9   0.0   1   1   2.9e-10   4.7e-07   30.1   0.0     3    94     5    88     3    90 0.86 Semialdehyde dehydrogenase, NAD binding domain
Saccharop_dh         PF03435.13   386 sp|P39353|YJHC_ECOLI -            372   9.8e-06   24.7   0.2   1   1   1.2e-08     2e-05   23.7   0.2     3   122     6   118     5   121 0.86 Saccharopine dehydrogenase
F420_oxidored        PF03807.12    96 sp|P39353|YJHC_ECOLI -            372     0.012   16.0   0.0   1   1   2.5e-05     0.041   14.3   0.0     2    78     4    77     3    88 0.78 NADP oxidoreductase coenzyme F420-dependent
NAD_binding_2        PF03446.10   163 sp|P39353|YJHC_ECOLI -            372     0.026   14.3   0.0   1   1   2.9e-05     0.048   13.5   0.0     2   116     2   115     1   118 0.73 NAD binding domain of 6-phosphogluconate dehydrogenase
2-Hacid_dh_C         PF02826.14   178 sp|P39353|YJHC_ECOLI -            372     0.086   11.9   0.0   1   1   0.00011      0.18   10.9   0.0    39   111     4    80     2    86 0.75 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CoA_binding          PF02629.14    96 sp|P39353|YJHC_ECOLI -            372     0.088   13.3   0.0   1   1    0.0001      0.17   12.4   0.0     6    86     4    84     1    89 0.86 CoA binding domain
NAD_binding_3        PF03447.11   117 sp|P39353|YJHC_ECOLI -            372     0.099   13.0   0.0   1   1   0.00011      0.18   12.2   0.0     1   110     8   110     8   116 0.77 Homoserine dehydrogenase, NAD binding domain
GntP_permease        PF02447.11   441 sp|P39357|YJHF_ECOLI -            449  3.8e-183  608.9  44.3   1   1  2.9e-187  4.3e-183  608.8  44.3     1   441     1   448     1   448 0.99 GntP family permease
Sulfatase            PF00884.18   308 sp|P39349|YJGX_ECOLI -            371   3.2e-24   85.6   0.1   1   1   2.7e-28   3.9e-24   85.3   0.1     2   297    93   344    92   355 0.83 Sulfatase
DHDPS                PF00701.17   289 sp|P39359|YJHH_ECOLI -            301  1.1e-109  365.4   0.0   1   1  2.6e-113  1.3e-109  365.2   0.0     1   289     3   297     3   297 0.98 Dihydrodipicolinate synthetase family
PA                   PF02225.17   101 sp|P39359|YJHH_ECOLI -            301      0.13   12.0   0.0   1   1   5.5e-05      0.27   10.9   0.0    32    88    69   134    51   141 0.79 PA domain
LCAT                 PF02450.10   389 sp|P39359|YJHH_ECOLI -            301      0.22   10.4   0.1   1   1   6.8e-05      0.34    9.8   0.1    79   110    97   128    88   136 0.85 Lecithin:cholesterol acyltransferase
Sugar-bind           PF04198.8    255 sp|P39356|YJHU_ECOLI -            328   1.9e-82  275.9   0.1   1   1     3e-85   2.3e-82  275.7   0.1     2   255    64   323    63   323 0.98 Putative sugar-binding domain
HTH_23               PF13384.1     50 sp|P39356|YJHU_ECOLI -            328   1.1e-06   28.0   0.2   1   2   8.2e-08   6.4e-05   22.4   0.1    13    46    22    56    17    59 0.87 Homeodomain-like domain
Sigma70_r4_2         PF08281.7     54 sp|P39356|YJHU_ECOLI -            328   3.7e-06   26.3   0.2   1   2   1.7e-07   0.00013   21.3   0.0    21    52    22    53    21    54 0.95 Sigma-70, region 4
Sigma70_r4           PF04545.11    50 sp|P39356|YJHU_ECOLI -            328   1.6e-05   24.1   1.1   1   2   3.4e-06    0.0027   16.9   0.1    15    37    22    44    21    53 0.93 Sigma-70, region 4
HTH_28               PF13518.1     52 sp|P39356|YJHU_ECOLI -            328   0.00011   22.0   0.2   1   2     2e-06    0.0016   18.4   0.0     8    41    23    56    22    59 0.93 Helix-turn-helix domain
HTH_40               PF14493.1     91 sp|P39356|YJHU_ECOLI -            328   0.00023   21.3   0.0   1   1   5.2e-07    0.0004   20.5   0.0     4    45    18    58    15    85 0.83 Helix-turn-helix domain
HTH_3                PF01381.17    55 sp|P39356|YJHU_ECOLI -            328    0.0003   20.5   0.3   1   2   2.3e-05     0.018   14.8   0.1     7    29    25    47    25    49 0.93 Helix-turn-helix
HTH_38               PF13936.1     44 sp|P39356|YJHU_ECOLI -            328    0.0049   16.3   0.0   1   1   1.5e-05     0.011   15.2   0.0    16    39    23    46    18    49 0.88 Helix-turn-helix domain
HTH_11               PF08279.7     55 sp|P39356|YJHU_ECOLI -            328     0.012   15.2   0.0   1   1   3.6e-05     0.028   14.0   0.0    17    46    29    59    20    67 0.82 HTH domain
HTH_7                PF02796.10    45 sp|P39356|YJHU_ECOLI -            328     0.017   14.9   0.3   1   1   6.5e-05      0.05   13.4   0.3    18    43    24    49    22    51 0.94 Helix-turn-helix domain of resolvase
HTH_29               PF13551.1    112 sp|P39356|YJHU_ECOLI -            328     0.022   14.9   0.0   1   1   5.7e-05     0.045   13.9   0.0     6    41    22    56    18    61 0.89 Winged helix-turn helix
DUF134               PF02001.11   106 sp|P39356|YJHU_ECOLI -            328     0.025   14.4   0.0   1   1   6.8e-05     0.053   13.4   0.0    55    83    25    53    16    58 0.86 Protein of unknown function  DUF134
Sigma70_ECF          PF07638.6    185 sp|P39356|YJHU_ECOLI -            328     0.041   13.5   0.0   1   1    0.0001      0.08   12.6   0.0   147   177    23    53     9    60 0.87 ECF sigma factor
HTH_22               PF13309.1     64 sp|P39356|YJHU_ECOLI -            328     0.069   12.9   0.0   1   1    0.0002      0.16   11.7   0.0    44    64    29    49    26    49 0.91 HTH domain
HTH_31               PF13560.1     64 sp|P39356|YJHU_ECOLI -            328     0.081   13.1   0.1   1   1     0.001      0.82    9.9   0.1    13    39    26    52    19    57 0.91 Helix-turn-helix domain
Phage_NinH           PF06322.6     64 sp|P39356|YJHU_ECOLI -            328       0.1   12.2   0.0   1   1   0.00028      0.22   11.1   0.0    18    38    29    49    22    62 0.85 Phage NinH protein
HTH_10               PF04967.7     53 sp|P39356|YJHU_ECOLI -            328      0.11   12.0   0.1   1   1    0.0008      0.63    9.6   0.0    27    48    31    52    24    54 0.88 HTH DNA binding domain
HTH_17               PF12728.2     51 sp|P39356|YJHU_ECOLI -            328      0.15   12.3   0.1   1   1    0.0012      0.95    9.7   0.0     5    23    31    49    29    63 0.81 Helix-turn-helix domain
Fe_dep_repress       PF01325.14    60 sp|P39356|YJHU_ECOLI -            328       0.5   10.3   0.1   1   1   0.00064       0.5   10.3   0.1    24    54    29    59    24    63 0.92 Iron dependent repressor, N-terminal DNA binding domain
ILVD_EDD             PF00920.16   521 sp|P39358|YJHG_ECOLI -            655  8.2e-143  476.5   0.7   1   1  6.5e-147  9.6e-143  476.3   0.7    13   484    85   581    81   637 0.90 Dehydratase family
DUF2084              PF09857.4     85 sp|Q2EEU2|YJHX_ECOLI -             85   1.6e-37  127.0   0.5   1   1   1.2e-41   1.8e-37  126.9   0.5     1    85     1    85     1    85 1.00 Uncharacterized protein conserved in bacteria (DUF2084)
Acetyltransf_1       PF00583.19    83 sp|P39368|YJHQ_ECOLI -            181   4.6e-09   36.1   0.1   1   1   2.6e-12   7.7e-09   35.4   0.1     2    71    54   125    53   131 0.85 Acetyltransferase (GNAT) family
Acetyltransf_9       PF13527.1    127 sp|P39368|YJHQ_ECOLI -            181     6e-08   32.5   0.0   1   1   2.8e-11   8.3e-08   32.1   0.0     7   126    13   132     8   133 0.88 Acetyltransferase (GNAT) domain
Acetyltransf_7       PF13508.1     79 sp|P39368|YJHQ_ECOLI -            181   5.2e-05   23.3   0.0   1   1   2.7e-08   8.1e-05   22.7   0.0     6    79    51   132    47   132 0.73 Acetyltransferase (GNAT) domain
Acetyltransf_10      PF13673.1    117 sp|P39368|YJHQ_ECOLI -            181    0.0055   16.8   0.0   1   1   2.5e-06    0.0075   16.3   0.0    35    96    36   112     9   130 0.69 Acetyltransferase (GNAT) domain
Acetyltransf_CG      PF14542.1     78 sp|P39368|YJHQ_ECOLI -            181      0.13   12.1   0.0   1   1   7.6e-05      0.23   11.3   0.0    27    55    84   112    51   118 0.73 GCN5-related N-acetyl-transferase
cobW                 PF02492.14   178 sp|P24203|YJIA_ECOLI -            318   2.6e-48  163.8   0.2   1   1   4.8e-51   3.5e-48  163.3   0.2     2   177     6   183     5   184 0.94 CobW/HypB/UreG, nucleotide-binding domain
CobW_C               PF07683.9     94 sp|P24203|YJIA_ECOLI -            318   9.3e-19   66.9   0.0   1   1   2.2e-21   1.6e-18   66.1   0.0     1    92   224   315   224   317 0.95 Cobalamin synthesis protein cobW C-terminal domain
AAA_22               PF13401.1    131 sp|P24203|YJIA_ECOLI -            318   0.00059   19.9   0.0   1   1   1.7e-06    0.0013   18.8   0.0     6    65     6    87     3   104 0.79 AAA domain
AAA_17               PF13207.1    121 sp|P24203|YJIA_ECOLI -            318    0.0012   19.7   0.1   1   1   3.2e-06    0.0024   18.6   0.1     3    83     8   118     6   311 0.82 AAA domain
AAA_33               PF13671.1    143 sp|P24203|YJIA_ECOLI -            318    0.0022   17.8   0.3   1   1   2.8e-05     0.021   14.7   0.3     1   119     6   173     6   188 0.54 AAA domain
AAA_18               PF13238.1    129 sp|P24203|YJIA_ECOLI -            318    0.0042   17.3   0.3   1   1   1.9e-05     0.014   15.6   0.1     2    85     8   115     8   181 0.63 AAA domain
MobB                 PF03205.9    140 sp|P24203|YJIA_ECOLI -            318    0.0048   16.6   0.0   1   1   1.3e-05    0.0097   15.6   0.0     3    45     7    46     5    48 0.84 Molybdopterin guanine dinucleotide synthesis protein B
UPF0079              PF02367.12   123 sp|P24203|YJIA_ECOLI -            318    0.0064   16.1   0.0   1   1   1.5e-05     0.011   15.3   0.0    16    39     5    28     1    45 0.81 Uncharacterised P-loop hydrolase UPF0079
Arch_ATPase          PF01637.13   234 sp|P24203|YJIA_ECOLI -            318     0.016   14.9   0.0   1   1   3.3e-05     0.025   14.3   0.0    21    50     5    34     1    62 0.82 Archaeal ATPase
Zeta_toxin           PF06414.7    201 sp|P24203|YJIA_ECOLI -            318     0.017   14.2   0.0   1   1   5.2e-05     0.039   13.0   0.0    18    52     6    39     2    43 0.81 Zeta toxin
ABC_tran             PF00005.22   137 sp|P24203|YJIA_ECOLI -            318     0.019   15.2   0.0   1   1   3.9e-05     0.029   14.6   0.0    12    71     5    74     1   181 0.69 ABC transporter
Viral_helicase1      PF01443.13   234 sp|P24203|YJIA_ECOLI -            318     0.022   14.2   0.0   1   1   4.6e-05     0.034   13.6   0.0     2    29     8    37     7    73 0.75 Viral (Superfamily 1) RNA helicase
AAA_16               PF13191.1    185 sp|P24203|YJIA_ECOLI -            318     0.026   14.5   0.0   1   1   5.7e-05     0.042   13.8   0.0    26    81     6    56     2   143 0.77 AAA ATPase domain
AAA                  PF00004.24   132 sp|P24203|YJIA_ECOLI -            318     0.027   14.6   0.0   1   1   9.8e-05     0.072   13.2   0.0     2    49     8    60     7    86 0.77 ATPase family associated with various cellular activities (AAA)
AAA_14               PF13173.1    128 sp|P24203|YJIA_ECOLI -            318     0.029   14.2   0.0   1   1   9.2e-05     0.068   13.0   0.0     4    40     6    48     4    91 0.76 AAA domain
AAA_28               PF13521.1    163 sp|P24203|YJIA_ECOLI -            318     0.031   14.2   0.1   1   1   0.00018      0.13   12.1   0.0     4    39     9    49     6    84 0.79 AAA domain
AAA_29               PF13555.1     62 sp|P24203|YJIA_ECOLI -            318      0.09   12.3   0.0   1   1   0.00024      0.18   11.3   0.0    25    40     6    21     1    25 0.89 P-loop containing region of AAA domain
ArgK                 PF03308.11   267 sp|P24203|YJIA_ECOLI -            318      0.13   11.0   0.0   1   1   0.00031      0.23   10.1   0.0    34    81     9    54     4    70 0.84 ArgK protein
Gate                 PF07670.9    109 sp|P0AEH8|YJIG_ECOLI -            153   5.7e-11   42.2   4.5   1   1   7.7e-15   5.7e-11   42.2   4.5     3    92    27   110    25   144 0.87 Nucleoside recognition
Glyco_transf_5       PF08323.6    245 sp|P0AEH8|YJIG_ECOLI -            153     0.079   12.4   0.1   1   1   1.4e-05       0.1   12.0   0.1    11    56    75   117    69   146 0.74 Starch synthase catalytic domain
SdiA-regulated       PF06977.6    249 sp|P39382|YJIK_ECOLI -            286   8.6e-90  300.0   0.2   1   1     2e-93   9.9e-90  299.8   0.2     2   249    37   281    36   281 0.98 SdiA-regulated
Phytase-like         PF13449.1    326 sp|P39382|YJIK_ECOLI -            286   1.1e-06   28.2   0.0   1   2   4.3e-09   2.1e-05   23.9   0.0    81   178    96   183    32   236 0.74 Esterase-like activity of phytase
Transposase_31       PF04754.7    205 sp|P39387|YJIP_ECOLI -            306   4.3e-84  280.9   0.5   1   1   3.9e-88   5.7e-84  280.5   0.5     1   204     8   210     8   211 0.98 Putative transposase, YhgA-like
HGD-D                PF06050.8    349 sp|P39384|YJIM_ECOLI -            383  5.7e-101  337.8   0.3   1   1  1.3e-104  6.6e-101  337.6   0.3     1   349    39   383    39   383 0.98 2-hydroxyglutaryl-CoA dehydratase, D-component
DUF3578              PF12102.3    188 sp|P39384|YJIM_ECOLI -            383     0.054   13.0   0.0   1   1   1.9e-05     0.093   12.3   0.0    35   154    71   189    58   226 0.82 Domain of unknown function (DUF3578)
S-methyl_trans       PF02574.11   305 sp|P39384|YJIM_ECOLI -            383     0.084   12.1   0.2   2   2   5.5e-05      0.27   10.4   0.1   187   237   271   320   242   353 0.80 Homocysteine S-methyltransferase
Aminotran_1_2        PF00155.16   363 sp|P39389|YJIR_ECOLI -            470   1.5e-36  126.1   0.0   1   1   1.2e-39     2e-36  125.6   0.0    30   363   132   461   106   461 0.83 Aminotransferase class I and II
GntR                 PF00392.16    64 sp|P39389|YJIR_ECOLI -            470   3.5e-16   58.3   0.1   1   1   4.9e-19     8e-16   57.2   0.1     2    64     4    66     3    66 0.98 Bacterial regulatory proteins, gntR family
Aminotran_MocR       PF12897.2    425 sp|P39389|YJIR_ECOLI -            470     2e-05   23.3   0.0   1   2   5.3e-08   8.7e-05   21.2   0.0   128   217   196   284   161   296 0.87 Alanine-glyoxylate amino-transferase
HTH_41               PF14502.1     48 sp|P39389|YJIR_ECOLI -            470   2.5e-05   23.7   0.0   1   1     3e-08   4.9e-05   22.8   0.0     2    37    22    57    21    61 0.93 Helix-turn-helix domain
DegT_DnrJ_EryC1      PF01041.12   363 sp|P39389|YJIR_ECOLI -            470    0.0013   17.8   0.0   1   1   1.3e-06    0.0022   17.0   0.0    44   146   172   280   163   282 0.84 DegT/DnrJ/EryC1/StrS aminotransferase family
HTH_28               PF13518.1     52 sp|P39389|YJIR_ECOLI -            470     0.031   14.2   0.2   1   1   0.00015      0.26   11.3   0.0     8    38    19    52    18    64 0.80 Helix-turn-helix domain
Fe_dep_repress       PF01325.14    60 sp|P39389|YJIR_ECOLI -            470     0.056   13.4   0.2   1   2   0.00018       0.3   11.0   0.1    20    59    24    63    19    64 0.90 Iron dependent repressor, N-terminal DNA binding domain
DUF3815              PF12821.2    130 sp|P0ADD2|YJJB_ECOLI -            157   9.1e-30  103.2  11.7   1   1   1.4e-33   1.1e-29  103.0  11.7     1   128    12   147    12   149 0.95 Protein of unknown function (DUF3815)
DUF1212              PF06738.7    193 sp|P0ADD2|YJJB_ECOLI -            157   1.1e-06   28.2   6.7   1   2   1.4e-10   1.1e-06   28.2   6.7   107   193    14    99     9    99 0.96 Protein of unknown function (DUF1212)
HAD_2                PF13419.1    176 sp|P0A8Y1|YJJG_ECOLI -            225   1.9e-28   99.8   0.0   1   1     6e-32   2.2e-28   99.6   0.0     1   176     6   195     6   195 0.92 Haloacid dehalogenase-like hydrolase
Hydrolase_like       PF13242.1     75 sp|P0A8Y1|YJJG_ECOLI -            225     1e-12   47.5   0.0   1   1   4.5e-16   1.7e-12   46.8   0.0     3    75   149   218   147   218 0.85 HAD-hyrolase-like
Hydrolase            PF00702.21   215 sp|P0A8Y1|YJJG_ECOLI -            225   2.3e-12   47.8   0.2   1   1   3.2e-15   1.2e-11   45.4   0.2   114   215    77   189     3   189 0.77 haloacid dehalogenase-like hydrolase
HAD                  PF12710.2    192 sp|P0A8Y1|YJJG_ECOLI -            225   3.9e-05   23.9   0.0   1   1   1.6e-08   6.1e-05   23.2   0.0     1   185     6   178     6   183 0.69 haloacid dehalogenase-like hydrolase
HipA_N               PF07805.7     81 sp|P39410|YJJJ_ECOLI -            443   7.1e-11   42.1   0.0   1   1   3.6e-14   1.3e-10   41.3   0.0     1    81   201   281   201   281 0.91 HipA-like N-terminal domain
HipA_C               PF07804.7     79 sp|P39410|YJJJ_ECOLI -            443   1.9e-10   40.7   0.0   1   1     1e-13   3.7e-10   39.7   0.0     1    79   287   364   287   364 0.96 HipA-like C-terminal domain
SPAM                 PF02090.10   147 sp|P39410|YJJJ_ECOLI -            443     0.066   13.2   0.0   1   1   3.5e-05      0.13   12.2   0.0   112   129   156   173   146   188 0.84 Salmonella surface presentation of antigen gene type M protein
MarR_2               PF12802.2     62 sp|P39410|YJJJ_ECOLI -            443     0.083   12.5   0.4   1   2   8.5e-05      0.31   10.7   0.2    18    44    11    35     4    35 0.85 MarR family
Radical_SAM          PF04055.16   166 sp|P39409|YJJW_ECOLI -            287   8.5e-25   87.8   0.2   1   1   1.3e-27   1.4e-24   87.1   0.2     3   166    27   232    26   232 0.96 Radical SAM superfamily
Fer4_12              PF13353.1    139 sp|P39409|YJJW_ECOLI -            287   1.3e-10   41.5   4.2   1   1   2.1e-12   2.2e-09   37.5   4.2     1   136    17   192    17   195 0.69 4Fe-4S single cluster domain
Fer4                 PF00037.22    24 sp|P39409|YJJW_ECOLI -            287   1.6e-05   24.2  16.1   1   2   4.4e-08   4.7e-05   22.8   1.3     5    23    44    62    41    63 0.89 4Fe-4S binding domain
Fer4                 PF00037.22    24 sp|P39409|YJJW_ECOLI -            287   1.6e-05   24.2  16.1   2   2   0.00029       0.3   10.7   2.3     1    22    69    90    69    90 0.90 4Fe-4S binding domain
Fer4_16              PF13484.1     67 sp|P39409|YJJW_ECOLI -            287   2.1e-05   25.1  12.6   1   2   4.2e-06    0.0044   17.7   1.1     1    19    46    64    46    73 0.84 4Fe-4S double cluster binding domain
Fer4_16              PF13484.1     67 sp|P39409|YJJW_ECOLI -            287   2.1e-05   25.1  12.6   2   2   3.2e-05     0.034   14.8   0.4     2    25    76    99    75   117 0.82 4Fe-4S double cluster binding domain
Fer4_7               PF12838.2     52 sp|P39409|YJJW_ECOLI -            287   2.7e-05   24.4  13.8   1   1   2.5e-08   2.7e-05   24.4  13.8     1    52    46    90    46    90 0.95 4Fe-4S dicluster domain
Fer4_10              PF13237.1     52 sp|P39409|YJJW_ECOLI -            287   3.3e-05   23.5  13.4   1   1   3.1e-08   3.3e-05   23.5  13.4     7    52    45    87    39    87 0.94 4Fe-4S dicluster domain
Fer4_14              PF13394.1    119 sp|P39409|YJJW_ECOLI -            287   0.00022   21.2   8.7   1   1   0.00017      0.18   11.8   8.7     2    92    27   157    26   171 0.73 4Fe-4S single cluster domain
Fer4_9               PF13187.1     55 sp|P39409|YJJW_ECOLI -            287   0.00042   20.5  14.1   1   1     4e-07   0.00042   20.5  14.1     1    54    46    90    46    91 0.94 4Fe-4S dicluster domain
Fer4_6               PF12837.2     24 sp|P39409|YJJW_ECOLI -            287   0.00055   19.6   1.7   1   2   5.2e-07   0.00055   19.6   1.7     8    24    46    62    42    62 0.92 4Fe-4S binding domain
Fer4_17              PF13534.1     61 sp|P39409|YJJW_ECOLI -            287    0.0055   17.0  18.2   2   2   0.00014      0.15   12.4   1.1    45    59    75    89    65    95 0.84 4Fe-4S dicluster domain
FdhE                 PF04216.7    293 sp|P39409|YJJW_ECOLI -            287      0.48   10.1  13.0   1   1   0.00088      0.93    9.1  13.0   201   265    33    97    30   105 0.90 Protein involved in formate dehydrogenase formation
Fer4_2               PF12797.2     22 sp|P39409|YJJW_ECOLI -            287       5.5    7.1  21.8   1   2   0.00044      0.47   10.4   3.4     8    21    45    58    41    59 0.89 4Fe-4S binding domain
Fer4_21              PF14697.1     59 sp|P39409|YJJW_ECOLI -            287       7.6    6.4  18.9   1   1   0.00013      0.13   12.1  10.7     7    54    46    88    43    97 0.77 4Fe-4S dicluster domain
TatD_DNase           PF01026.16   255 sp|P39408|YJJV_ECOLI -            259     2e-67  227.0   0.0   1   1   6.2e-71   2.3e-67  226.8   0.0     1   255     6   257     6   257 0.98 TatD related DNase
Amidohydro_2         PF04909.9    273 sp|P39408|YJJV_ECOLI -            259     0.099   12.1   1.2   1   1   4.3e-05      0.16   11.5   1.2     1   138     6   135     6   257 0.71 Amidohydrolase
CstA                 PF02554.9    376 sp|P39396|YJIY_ECOLI -            716  3.9e-155  516.1  26.1   1   3  7.9e-159  3.9e-155  516.1  26.1     1   359    34   422    34   455 0.94 Carbon starvation protein CstA
DUF4161              PF13722.1    127 sp|P39396|YJIY_ECOLI -            716   2.1e-45  154.1   4.4   2   2   4.3e-49   2.1e-45  154.1   4.4     3   127   485   614   483   614 0.98 C-terminal domain on CstA (DUF4161)
DoxX_3               PF13781.1    102 sp|P39396|YJIY_ECOLI -            716     0.021   15.1   1.5   1   4   4.3e-06     0.021   15.1   1.5    28    83   252   307   249   312 0.93 DoxX-like family
DUF905               PF06006.7     71 sp|P75677|YKFF_ECOLI -             79   6.7e-39  131.0   0.0   1   1   5.1e-43   7.6e-39  130.9   0.0     2    71     5    74     4    74 0.98 Bacterial protein of unknown function (DUF905)
DUF987               PF06174.6     66 sp|Q9XB42|YKFH_ECOLI -             73   1.9e-44  148.9   1.1   1   1   1.5e-48   2.2e-44  148.8   1.1     1    66     1    66     1    66 0.99 Protein of unknown function (DUF987)
RadC                 PF04002.10   123 sp|Q47685|YKFG_ECOLI -            158   1.4e-48  163.5   0.1   1   1     5e-52   1.9e-48  163.2   0.1     2   123    37   158    36   158 0.98 RadC-like JAB domain
Prok-JAB             PF14464.1    105 sp|Q47685|YKFG_ECOLI -            158   0.00044   19.7   0.2   1   1   1.7e-07   0.00062   19.2   0.2    19    96    57   147    39   155 0.68 Prokaryotic homologs of the JAB domain
Toxin-JAB1           PF15659.1    162 sp|Q47685|YKFG_ECOLI -            158     0.019   14.8   0.0   1   1   6.9e-06     0.026   14.4   0.0    99   141    83   126    64   139 0.78 JAB-like toxin  1
EPO_TPO              PF00758.13   165 sp|Q47685|YKFG_ECOLI -            158       0.1   12.2   0.0   1   1   4.1e-05      0.15   11.6   0.0    87   161     7    83     2    86 0.79 Erythropoietin/thrombopoietin
CCG                  PF02754.11    85 sp|P77252|YKGE_ECOLI -            239   2.2e-30  104.5   0.2   1   2   2.2e-17   3.3e-13   49.4   0.0     1    84     3    84     3    85 0.95 Cysteine-rich domain
CCG                  PF02754.11    85 sp|P77252|YKGE_ECOLI -            239   2.2e-30  104.5   0.2   2   2   1.3e-18   1.9e-14   53.4   0.0     2    84   133   216   132   217 0.92 Cysteine-rich domain
DUF1219              PF06755.7    117 sp|P77692|YKFI_ECOLI -            113   3.9e-57  190.8   0.0   1   1   2.9e-61   4.3e-57  190.6   0.0     1   112     1   112     1   113 0.97 Protein of unknown function (DUF1219)
DUF162               PF02589.10   189 sp|P77536|YKGF_ECOLI -            475     3e-51  173.6   0.1   1   1   5.2e-54   4.1e-51  173.2   0.1     3   189    72   294    70   294 0.99 Uncharacterised ACR, YkgG family COG1556
Fer4_8               PF13183.1     57 sp|P77536|YKGF_ECOLI -            475   1.1e-11   44.5   2.2   1   1   3.3e-14   2.6e-11   43.3   2.2     2    57   309   376   308   376 0.79 4Fe-4S dicluster domain
DUF3390              PF11870.3     93 sp|P77536|YKGF_ECOLI -            475   4.9e-10   39.2   0.6   1   1   1.5e-12   1.2e-09   37.9   0.6    13    92   387   470   379   471 0.83 Domain of unknown function (DUF3390)
Fer4_9               PF13187.1     55 sp|P77536|YKGF_ECOLI -            475   9.3e-09   35.4   0.7   1   1   3.5e-11   2.7e-08   33.9   0.7     1    53   311   375   311   376 0.94 4Fe-4S dicluster domain
Fer4_10              PF13237.1     52 sp|P77536|YKGF_ECOLI -            475   1.3e-07   31.2   4.9   1   1   7.4e-10   5.8e-07   29.2   5.4     7    52   310   373   305   373 0.69 4Fe-4S dicluster domain
Fer4_7               PF12838.2     52 sp|P77536|YKGF_ECOLI -            475   1.8e-07   31.3   4.0   1   1   6.4e-10     5e-07   30.0   4.0     1    51   311   375   311   376 0.77 4Fe-4S dicluster domain
Fer4_17              PF13534.1     61 sp|P77536|YKGF_ECOLI -            475   2.4e-07   30.9   2.2   1   1   9.6e-10   7.5e-07   29.4   2.2     1    60   311   376   311   377 0.71 4Fe-4S dicluster domain
Fer4_18              PF13746.1     69 sp|P77536|YKGF_ECOLI -            475   1.1e-06   28.8   3.4   1   2   1.4e-05     0.011   16.1   0.1    48    65   308   325   263   329 0.81 4Fe-4S dicluster domain
Fer4_18              PF13746.1     69 sp|P77536|YKGF_ECOLI -            475   1.1e-06   28.8   3.4   2   2   0.00019      0.15   12.5   0.5    51    67   361   377   350   379 0.85 4Fe-4S dicluster domain
Fer4                 PF00037.22    24 sp|P77536|YKGF_ECOLI -            475   4.9e-05   22.7  12.8   1   2   5.6e-07   0.00043   19.7   1.9     6    20   310   324   306   325 0.88 4Fe-4S binding domain
Fer4_2               PF12797.2     22 sp|P77536|YKGF_ECOLI -            475   0.00048   19.8  11.6   1   2     8e-07   0.00062   19.5   2.7     6    22   308   324   305   324 0.91 4Fe-4S binding domain
Fer4_6               PF12837.2     24 sp|P77536|YKGF_ECOLI -            475    0.0021   17.8   3.3   1   2   2.7e-06    0.0021   17.8   3.3     8    21   311   324   308   328 0.91 4Fe-4S binding domain
Fer4_15              PF13459.1     65 sp|P77536|YKGF_ECOLI -            475      0.01   16.4   2.4   1   2   0.00026       0.2   12.2   0.1     6    32   310   336   306   345 0.85 4Fe-4S single cluster domain
Fer4_4               PF12800.2     17 sp|P77536|YKGF_ECOLI -            475     0.023   14.9   3.1   1   1     3e-05     0.023   14.9   3.1     3    15   311   323   310   327 0.94 4Fe-4S binding domain
Fer4_3               PF12798.2     15 sp|P77536|YKGF_ECOLI -            475     0.033   14.7  16.5   1   2    0.0002      0.16   12.6   4.2     1    12   312   323   312   326 0.95 4Fe-4S binding domain
CobN-Mg_chel         PF02514.11  1098 sp|P77536|YKGF_ECOLI -            475     0.038   11.3   0.1   1   1   5.6e-05     0.044   11.1   0.1   552   621    40   123     4   254 0.70 CobN/Magnesium Chelatase
14-3-3               PF00244.15   236 sp|P77536|YKGF_ECOLI -            475     0.043   12.9   0.1   1   1   8.1e-05     0.063   12.3   0.1    91   144    56   112    11   125 0.73 14-3-3 protein
Fer4_16              PF13484.1     67 sp|P77536|YKGF_ECOLI -            475     0.062   14.0  10.0   1   2    0.0012      0.97   10.2  10.7     1    66   311   374   311   375 0.79 4Fe-4S double cluster binding domain
Fer4_13              PF13370.1     58 sp|P77536|YKGF_ECOLI -            475       1.1    9.7  10.6   1   2   0.00022      0.17   12.2   0.5     5    18   311   324   308   337 0.91 4Fe-4S single cluster domain
DUF162               PF02589.10   189 sp|P77433|YKGG_ECOLI -            231     7e-36  123.5   0.1   1   1   6.9e-40     1e-35  122.9   0.1    19   189    65   228    47   228 0.91 Uncharacterised ACR, YkgG family COG1556
HTH_Tnp_1            PF01527.15    76 sp|Q79E92|YKGN_ECOLI -            112   2.3e-17   62.7   0.1   1   1   2.9e-20     3e-17   62.3   0.1     2    76     2    72     1    72 0.89 Transposase
HTH_23               PF13384.1     50 sp|Q79E92|YKGN_ECOLI -            112   1.9e-05   24.1   0.0   1   1   3.4e-08   3.6e-05   23.2   0.0     6    41    10    46     5    59 0.88 Homeodomain-like domain
HTH_28               PF13518.1     52 sp|Q79E92|YKGN_ECOLI -            112   7.8e-05   22.5   0.0   1   1   1.3e-07   0.00014   21.7   0.0     1    36    10    46    10    49 0.93 Helix-turn-helix domain
Terminase_5          PF06056.7     58 sp|Q79E92|YKGN_ECOLI -            112   0.00052   19.5   0.1   1   1   8.2e-07   0.00087   18.7   0.1    13    55    22    64    21    67 0.86 Putative ATPase subunit of terminase (gpP-like)
MAD                  PF05557.8    722 sp|Q79E92|YKGN_ECOLI -            112     0.001   17.2   0.1   1   1   1.1e-06    0.0011   17.1   0.1   361   426    24    89     8    98 0.77 Mitotic checkpoint protein
CCDC155              PF14662.1    193 sp|Q79E92|YKGN_ECOLI -            112    0.0031   17.1   0.0   1   1     3e-06    0.0031   17.1   0.0    91   132    50    92    25   112 0.79 Coiled-coil region of CCDC155
DUF4140              PF13600.1    104 sp|Q79E92|YKGN_ECOLI -            112    0.0036   17.7   1.6   1   1   4.3e-06    0.0045   17.4   1.6    61    99    48    83     7    85 0.80 N-terminal domain of unknown function (DUF4140)
HTH_Tnp_IS630        PF01710.11   120 sp|Q79E92|YKGN_ECOLI -            112    0.0092   15.6   0.1   1   1     1e-05     0.011   15.4   0.1    13    85    17    87     5    98 0.73 Transposase
Lzipper-MIP1         PF14389.1     88 sp|Q79E92|YKGN_ECOLI -            112     0.017   15.2   0.1   1   1   2.4e-05     0.026   14.6   0.1     5    39    51    85    48    96 0.86 Leucine-zipper of ternary complex factor MIP1
GAS                  PF13851.1    201 sp|Q79E92|YKGN_ECOLI -            112     0.017   14.3   0.0   1   1     2e-05     0.021   13.9   0.0    43    79    49    85    24    88 0.92 Growth-arrest specific micro-tubule binding
Bap31                PF05529.7    192 sp|Q79E92|YKGN_ECOLI -            112     0.064   12.7   0.3   1   1   6.9e-05     0.073   12.5   0.3   151   183    46    83     8    87 0.75 B-cell receptor-associated protein 31-like
Dna2                 PF08696.6    209 sp|Q79E92|YKGN_ECOLI -            112     0.075   12.3   0.1   1   1   8.5e-05      0.09   12.0   0.1   124   183    12    75     3    85 0.75 DNA replication factor Dna2
DivIC                PF04977.10    80 sp|Q79E92|YKGN_ECOLI -            112      0.26   10.7   1.9   1   1    0.0004      0.42   10.1   1.9    20    45    57    82    50    87 0.56 Septum formation initiator
Val_tRNA-synt_C      PF10458.4     66 sp|Q79E92|YKGN_ECOLI -            112      0.66   10.0   4.8   1   1   0.00013      0.14   12.2   1.5     1    22    58    79    58    83 0.85 Valyl tRNA synthetase tRNA binding arm
RHS                  PF03527.9     41 sp|P77759|YLBH_ECOLI -            236   1.9e-09   37.1   0.3   1   1   2.6e-13   1.9e-09   37.1   0.3    13    41     2    30     2    30 0.96 RHS protein
SAA                  PF00277.13   103 sp|P77759|YLBH_ECOLI -            236    0.0013   19.0   0.0   1   1   3.9e-07    0.0029   17.9   0.0    10    84   111   200   105   207 0.70 Serum amyloid A protein
GSDH                 PF07995.6    331 sp|P75804|YLII_ECOLI -            371  6.7e-128  426.4   0.1   1   1    1e-131  7.7e-128  426.2   0.1     1   331    34   366    34   366 0.98 Glucose / Sorbosone dehydrogenase
DUF3659              PF12396.3     64 sp|P75804|YLII_ECOLI -            371     0.031   13.9   1.2   2   2   8.8e-05      0.65    9.7   0.4    23    56   310   345   305   351 0.71 Protein of unknown function (DUF3659)
Macro                PF01661.16   118 sp|P0A8D6|YMDB_ECOLI -            177   3.3e-41  139.8   0.0   1   1   2.8e-45   4.1e-41  139.5   0.0     1   118    21   137    21   137 0.99 Macro domain
KGG                  PF10685.4     23 sp|P56614|YMDF_ECOLI -             57   2.8e-20   71.7  18.2   1   2   5.5e-14   8.1e-10   38.3   6.3     1    23    10    31    10    31 0.98 Stress-induced bacterial acidophilic repeat motif
KGG                  PF10685.4     23 sp|P56614|YMDF_ECOLI -             57   2.8e-20   71.7  18.2   2   2   2.5e-14   3.6e-10   39.5   4.0     1    23    32    53    32    53 0.99 Stress-induced bacterial acidophilic repeat motif
Terminase_1          PF03354.10   477 sp|P75978|YMFN_ECOLI -            455   3.5e-75  253.2   0.0   1   1     3e-78   4.5e-75  252.8   0.0   117   476    76   438    68   439 0.90 Phage Terminase
HTH_36               PF13730.1     55 sp|P75978|YMFN_ECOLI -            455   1.9e-10   40.7   0.0   1   1   2.8e-13   4.1e-10   39.6   0.0     5    55    20    70    16    70 0.91 Helix-turn-helix domain
GntR                 PF00392.16    64 sp|P75978|YMFN_ECOLI -            455   3.1e-07   29.7   0.0   1   1   8.1e-10   1.2e-06   27.8   0.0    25    60    41    76    35    78 0.95 Bacterial regulatory proteins, gntR family
PaaX                 PF07848.7     70 sp|P75978|YMFN_ECOLI -            455    0.0001   22.2   0.1   1   1   1.5e-07   0.00022   21.1   0.1    29    57    46    74    38    81 0.88 PaaX-like protein
HTH_29               PF13551.1    112 sp|P75978|YMFN_ECOLI -            455   0.00089   19.3   0.0   1   1   1.4e-06    0.0021   18.1   0.0    14    57    42    83    33    99 0.82 Winged helix-turn helix
HTH_Crp_2            PF13545.1     76 sp|P75978|YMFN_ECOLI -            455    0.0029   17.3   0.0   1   1   4.3e-06    0.0063   16.2   0.0    26    64    38    76    24    77 0.86 Crp-like helix-turn-helix domain
MarR                 PF01047.17    59 sp|P75978|YMFN_ECOLI -            455     0.013   15.1   0.1   1   1     5e-05     0.074   12.7   0.0    19    51    42    74    40    77 0.90 MarR family
HTH_IclR             PF09339.5     52 sp|P75978|YMFN_ECOLI -            455     0.035   13.6   0.0   1   1     5e-05     0.074   12.6   0.0    20    50    42    72    15    74 0.90 IclR helix-turn-helix domain
MarR_2               PF12802.2     62 sp|P75978|YMFN_ECOLI -            455     0.039   13.6   0.1   1   1   6.7e-05     0.099   12.3   0.0    20    57    35    77    16    82 0.73 MarR family
TrmB                 PF01978.14    68 sp|P75978|YMFN_ECOLI -            455      0.13   12.0   0.0   1   1   0.00046      0.69    9.6   0.0    25    58    43    76    41    88 0.89 Sugar-specific transcriptional regulator TrmB
Transgly_assoc       PF04226.8     48 sp|P76011|YMGE_ECOLI -             84   1.1e-13   50.9  14.4   2   2   1.5e-17   1.1e-13   50.9  14.4     2    48    34    83    33    83 0.98 Transglycosylase associated protein
Gly-zipper_YMGG      PF13441.1     45 sp|Q7DFV3|YMGG_ECOLI -            114   2.9e-12   45.8  38.9   1   2   8.7e-10   1.3e-06   27.8  12.0     1    37    25    61    25    64 0.87 YMGG-like Gly-zipper
Gly-zipper_YMGG      PF13441.1     45 sp|Q7DFV3|YMGG_ECOLI -            114   2.9e-12   45.8  38.9   2   2   1.3e-08     2e-05   24.0  18.9     2    43    70   111    65   113 0.94 YMGG-like Gly-zipper
Gly-zipper_Omp       PF13488.1     46 sp|Q7DFV3|YMGG_ECOLI -            114   1.7e-11   43.5  39.9   1   2   1.8e-08   2.6e-05   23.7  13.7     2    33    30    61    28    71 0.89 Glycine zipper
Gly-zipper_Omp       PF13488.1     46 sp|Q7DFV3|YMGG_ECOLI -            114   1.7e-11   43.5  39.9   2   2   3.4e-09     5e-06   26.0  18.1     2    41    74   113    73   114 0.95 Glycine zipper
Gly-zipper_OmpA      PF13436.1    118 sp|Q7DFV3|YMGG_ECOLI -            114   9.3e-07   28.5  34.7   1   2   1.3e-05      0.02   14.5  12.1    49    86    24    61    16    68 0.63 Glycine-zipper containing OmpA-like membrane domain
Gly-zipper_OmpA      PF13436.1    118 sp|Q7DFV3|YMGG_ECOLI -            114   9.3e-07   28.5  34.7   2   2   3.2e-07   0.00048   19.7  15.4    48    93    67   112    62   114 0.91 Glycine-zipper containing OmpA-like membrane domain
Rick_17kDa_Anti      PF05433.10    42 sp|Q7DFV3|YMGG_ECOLI -            114   4.1e-06   26.3  47.5   2   4   1.9e-05     0.028   14.0  17.8     2    37    30    62    26    65 0.83 Glycine zipper 2TM domain
Rick_17kDa_Anti      PF05433.10    42 sp|Q7DFV3|YMGG_ECOLI -            114   4.1e-06   26.3  47.5   3   4   8.7e-08   0.00013   21.5  18.7     2    38    47    86    46    94 0.82 Glycine zipper 2TM domain
Rick_17kDa_Anti      PF05433.10    42 sp|Q7DFV3|YMGG_ECOLI -            114   4.1e-06   26.3  47.5   4   4   2.9e-05     0.043   13.4  22.2     2    39    74   112    73   113 0.79 Glycine zipper 2TM domain
Romo1                PF10247.4     67 sp|Q7DFV3|YMGG_ECOLI -            114     0.016   15.3  25.9   3   4   3.6e-05     0.053   13.7   0.7     8    26    72    90    67    92 0.90 Reactive mitochondrial oxygen species modulator 1
DUF456               PF04306.8    140 sp|Q7DFV3|YMGG_ECOLI -            114     0.035   14.1  16.1   1   1   4.7e-05      0.07   13.1  15.7    55   133    22   103     5   110 0.76 Protein of unknown function (DUF456)
TrbC                 PF04956.8     99 sp|Q7DFV3|YMGG_ECOLI -            114      0.41   10.6  10.2   1   2   3.2e-05     0.048   13.6   1.0    10    73     2    64     1    73 0.90 TrbC/VIRB2 family
DUF1269              PF06897.7    102 sp|Q7DFV3|YMGG_ECOLI -            114       1.2    9.1  23.1   1   3   0.00027       0.4   10.7   6.6     3    40    29    66    27    76 0.76 Protein of unknown function (DUF1269)
FUSC_2               PF13515.1    128 sp|Q7DFV3|YMGG_ECOLI -            114       6.9    6.6   8.9   1   2   0.00044      0.65    9.9   1.6    15    62     7    54     4    63 0.85 Fusaric acid resistance protein-like
MS_channel           PF00924.13   206 sp|P0AEB5|YNAI_ECOLI -            343   1.2e-63  214.2   0.4   1   1     4e-67   1.2e-63  214.2   0.4     2   205   120   323   119   324 0.99 Mechanosensitive ion channel
MASE1                PF05231.9    299 sp|P0AEB5|YNAI_ECOLI -            343    0.0019   17.2   1.2   1   2   6.4e-07    0.0019   17.2   1.2    76   202     9   131     3   136 0.81 MASE1
DoxX_3               PF13781.1    102 sp|P0AEB5|YNAI_ECOLI -            343     0.028   14.7   3.0   1   2   4.3e-05      0.13   12.6   1.0    23    78     1    56     1    60 0.94 DoxX-like family
EamA                 PF00892.15   126 sp|P0AEB5|YNAI_ECOLI -            343       2.8    8.0  13.8   1   2   5.8e-05      0.17   11.9   5.8    27   110    15   105     4   107 0.86 EamA-like transporter family
CTP_transf_1         PF01148.15   259 sp|P76091|YNBB_ECOLI -            298   3.9e-59  200.4  21.0   1   1   3.9e-63   5.8e-59  199.8  21.0     3   258    38   295    36   296 0.92 Cytidylyltransferase family
TonB_dep_Rec         PF00593.19   277 sp|P76115|YNCD_ECOLI -            700   3.7e-38  132.0  12.4   3   3   7.4e-42   3.7e-38  132.0  12.4     2   276   449   695   448   696 0.97 TonB dependent receptor
Plug                 PF07715.10   108 sp|P76115|YNCD_ECOLI -            700   6.3e-23   81.1   2.1   1   1     3e-26   1.5e-22   79.9   2.1     3   108    41   151    39   151 0.96 TonB-dependent Receptor Plug Domain
OMP_b-brl_3          PF14905.1    506 sp|P76115|YNCD_ECOLI -            700   1.3e-21   76.9   4.4   1   1     4e-25     2e-21   76.2   4.3    11   502   213   699   202   700 0.72 Outer membrane protein beta-barrel family
GST_N_3              PF13417.1     75 sp|P76117|YNCG_ECOLI -            205   3.4e-09   36.7   0.0   1   1     2e-12     6e-09   35.9   0.0    15    72    17    79    13    84 0.88 Glutathione S-transferase, N-terminal domain
GST_N_2              PF13409.1     70 sp|P76117|YNCG_ECOLI -            205   2.2e-06   27.5   0.0   1   1   1.3e-09   3.9e-06   26.7   0.0     9    67    16    74    12    77 0.84 Glutathione S-transferase, N-terminal domain
GST_C_3              PF14497.1     99 sp|P76117|YNCG_ECOLI -            205   8.9e-05   22.8   0.1   1   1   5.9e-08   0.00018   21.9   0.1    27    98   119   190    89   191 0.75 Glutathione S-transferase, C-terminal domain
GST_C_2              PF13410.1     69 sp|P76117|YNCG_ECOLI -            205   0.00034   20.4   0.2   1   1   6.5e-07    0.0019   18.0   0.3    14    41   136   163    87   201 0.90 Glutathione S-transferase, C-terminal domain
GST_N                PF02798.15    76 sp|P76117|YNCG_ECOLI -            205    0.0068   16.5   0.0   1   1   4.5e-06     0.013   15.6   0.0     4    71     3    71     2    75 0.84 Glutathione S-transferase, N-terminal domain
DDE_Tnp_1_assoc      PF13808.1     90 sp|P76119|YNCI_ECOLI -            374     4e-31  106.5   0.0   1   1   1.2e-34     9e-31  105.4   0.0     1    90     6    95     6    95 0.99 DDE_Tnp_1-associated
DDE_Tnp_1            PF01609.16   213 sp|P76119|YNCI_ECOLI -            374   1.8e-25   89.7   0.3   1   1   3.2e-29   2.4e-25   89.3   0.3     4   213   103   343   100   343 0.90 Transposase DDE domain
DSPc                 PF00782.15   133 sp|P76093|YNBD_ECOLI -            430   3.4e-26   91.3   0.0   1   1   3.9e-29   7.3e-26   90.3   0.0     1   132   306   429   306   430 0.96 Dual specificity phosphatase, catalytic domain
PAP2                 PF01569.16   129 sp|P76093|YNBD_ECOLI -            430   7.6e-11   41.7   3.6   1   1   1.5e-13   2.7e-10   40.0   3.6     4   126    85   199    79   202 0.86 PAP2 superfamily
PAP2_3               PF14378.1    191 sp|P76093|YNBD_ECOLI -            430     2e-08   34.0   1.8   1   1   1.1e-11     2e-08   34.0   1.8    71   189    80   190    70   192 0.85 PAP2 superfamily
Y_phosphatase        PF00102.22   235 sp|P76093|YNBD_ECOLI -            430   3.3e-06   26.6   0.0   1   1   2.7e-09     5e-06   26.0   0.0   148   224   349   419   325   424 0.85 Protein-tyrosine phosphatase
Y_phosphatase3       PF13350.1    164 sp|P76093|YNBD_ECOLI -            430     0.012   15.8   0.0   1   1   9.9e-06     0.018   15.2   0.0   111   150   356   395   332   402 0.86 Tyrosine phosphatase family
Myotub-related       PF06602.9    353 sp|P76093|YNBD_ECOLI -            430     0.022   13.5   0.1   1   1   1.7e-05     0.032   13.0   0.1   217   255   355   393   352   401 0.87 Myotubularin-like phosphatase domain
CDKN3                PF05706.7    168 sp|P76093|YNBD_ECOLI -            430     0.097   12.1   0.1   1   1   9.1e-05      0.17   11.3   0.1   112   159   348   395   338   404 0.73 Cyclin-dependent kinase inhibitor 3 (CDKN3)
MULE                 PF10551.4     93 sp|P76093|YNBD_ECOLI -            430      0.11   12.6   0.0   1   1   0.00023      0.43   10.7   0.0    23    70   368   425   353   429 0.76 MULE transposase domain
Bestrophin           PF01062.16   293 sp|P76146|YNEE_ECOLI -            304   6.8e-90  300.9   5.0   1   1     1e-93   7.6e-90  300.8   5.0     1   293     1   284     1   284 0.99 Bestrophin, RFP-TM, chloride channel
DUF4321              PF14209.1     49 sp|P76146|YNEE_ECOLI -            304     0.019   14.6   0.9   1   1   6.9e-06     0.051   13.2   0.9    27    48    47    68    45    68 0.94 Domain of unknown function (DUF4321)
UPF0060              PF02694.10   107 sp|P76169|YNFA_ECOLI -            108   4.6e-49  164.8  11.8   1   1   6.8e-53     5e-49  164.7  11.8     1   106     1   107     1   108 0.98 Uncharacterised BCR, YnfA/UPF0060 family
DUF4191              PF13829.1    224 sp|P76169|YNFA_ECOLI -            108      0.29   10.1   1.6   1   1   4.2e-05      0.31   10.1   1.0    28    85     5    65     2    73 0.85 Domain of unknown function (DUF4191)
DUF1283              PF06932.6     85 sp|P76170|YNFB_ECOLI -            113   1.1e-46  156.7   6.7   1   1   1.7e-50   1.3e-46  156.5   6.7     1    85    29   113    29   113 0.99 Protein of unknown function (DUF1283)
Phasin               PF05597.6    132 sp|P76170|YNFB_ECOLI -            113    0.0083   15.8   1.6   1   1   1.6e-06     0.012   15.4   1.6    44    95    34    82    22    85 0.81 Poly(hydroxyalcanoate) granule associated protein (phasin)
UPF0257              PF06788.8    236 sp|P67553|YNFC_ECOLI -            236  2.5e-139  462.2   1.0   1   1  1.8e-143  2.7e-139  462.0   1.0     1   236     1   236     1   236 1.00 Uncharacterised protein family (UPF0257)
Molybdopterin        PF00384.17   432 sp|P77374|YNFE_ECOLI -            808   7.1e-96  321.5   0.0   1   1   1.8e-99   8.9e-96  321.2   0.0     1   432   111   566   111   566 0.92 Molybdopterin oxidoreductase
Molydop_binding      PF01568.16   110 sp|P77374|YNFE_ECOLI -            808     1e-27   96.1   0.0   1   1   4.8e-31   2.4e-27   94.9   0.0     1   108   687   800   687   802 0.96 Molydopterin dinucleotide binding domain
Molybdop_Fe4S4       PF04879.11    55 sp|P77374|YNFE_ECOLI -            808   1.3e-14   53.6   1.0   1   1   4.8e-18   2.4e-14   52.8   1.0     1    55    49   108    49   108 0.97 Molybdopterin oxidoreductase Fe4S4 domain
Molybdopterin        PF00384.17   432 sp|P77783|YNFF_ECOLI -            807   1.9e-88  297.0   0.0   1   1   6.3e-92   2.3e-88  296.7   0.0     1   432   114   565   114   565 0.93 Molybdopterin oxidoreductase
Molydop_binding      PF01568.16   110 sp|P77783|YNFF_ECOLI -            807   4.8e-27   93.9   0.0   1   1   2.4e-30     9e-27   93.0   0.0     1   108   686   799   686   801 0.97 Molydopterin dinucleotide binding domain
Molybdop_Fe4S4       PF04879.11    55 sp|P77783|YNFF_ECOLI -            807   2.9e-13   49.4   0.9   1   1   1.4e-16     5e-13   48.6   0.9     1    55    52   111    52   111 0.96 Molybdopterin oxidoreductase Fe4S4 domain
TAT_signal           PF10518.4     26 sp|P77783|YNFF_ECOLI -            807     0.089   12.8   0.3   1   1   5.6e-05      0.21   11.7   0.3     2    25    14    37    13    38 0.90 TAT (twin-arginine translocation) pathway signal sequence
MFS_1                PF07690.11   352 sp|P43531|YNFM_ECOLI -            417     4e-38  131.0  61.8   1   2   6.9e-31     2e-27   95.8  26.3     1   223    41   261    41   271 0.84 Major Facilitator Superfamily
MFS_1                PF07690.11   352 sp|P43531|YNFM_ECOLI -            417     4e-38  131.0  61.8   2   2   1.5e-13   4.3e-10   38.8  33.7     6   167   248   407   242   415 0.83 Major Facilitator Superfamily
Sugar_tr             PF00083.19   451 sp|P43531|YNFM_ECOLI -            417   3.1e-14   52.4  34.3   1   2   2.3e-17   6.7e-14   51.3  10.1    46   197    71   217    11   223 0.90 Sugar (and other) transporter
MFS_1_like           PF12832.2     77 sp|P43531|YNFM_ECOLI -            417    0.0027   17.4   0.3   1   1   3.4e-06      0.01   15.6   0.3    13    72    49   108    46   123 0.91 MFS_1 like family
Avirulence           PF03377.8    385 sp|P43531|YNFM_ECOLI -            417      0.12   11.0   0.0   1   1   5.5e-05      0.16   10.6   0.0   360   376    54    70    31    86 0.57 Xanthomonas avirulence protein, Avr/PthA
YkuD                 PF03734.9    144 sp|P76193|YNHG_ECOLI -            334   3.2e-21   76.1   0.0   1   1   7.4e-25   5.5e-21   75.3   0.0     3   144    97   232    95   232 0.83 L,D-transpeptidase catalytic domain
LysM                 PF01476.15    44 sp|P76193|YNHG_ECOLI -            334   6.8e-09   35.4   0.0   1   1     2e-12   1.5e-08   34.3   0.0     1    44    42    85    42    85 0.99 LysM domain
HAD_2                PF13419.1    176 sp|P77247|YNIC_ECOLI -            222   1.1e-22   81.1   0.0   1   1   3.4e-26   1.3e-22   80.9   0.0     2   176    11   191    10   191 0.91 Haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P77247|YNIC_ECOLI -            222   2.7e-12   47.5   0.0   1   1   2.4e-15   8.9e-12   45.8   0.0     3   214     9   184     7   185 0.80 haloacid dehalogenase-like hydrolase
Hydrolase_like       PF13242.1     75 sp|P77247|YNIC_ECOLI -            222   2.9e-05   23.6   0.0   1   1   1.2e-08   4.6e-05   23.0   0.0     2    49   146   192   145   209 0.91 HAD-hyrolase-like
HAD                  PF12710.2    192 sp|P77247|YNIC_ECOLI -            222   4.3e-05   23.7   0.0   1   1   1.6e-08   5.9e-05   23.3   0.0     1   168    10   192    10   210 0.74 haloacid dehalogenase-like hydrolase
BPD_transp_1         PF00528.17   185 sp|P76224|YNJC_ECOLI -            511   1.5e-08   34.4  17.1   4   4     2e-12   1.5e-08   34.4  17.1    26   183   346   503   344   505 0.91 Binding-protein-dependent transport system inner membrane component
Stork_head           PF10264.4     80 sp|P76224|YNJC_ECOLI -            511      0.15   12.2   0.1   1   1   4.2e-05      0.31   11.2   0.1     9    40   289   320   285   325 0.94 Winged helix Storkhead-box1 domain
Fructosamin_kin      PF03881.9    288 sp|P77739|YNIA_ECOLI -            286    2e-111  371.6   0.0   1   1    3e-115  2.2e-111  371.4   0.0     1   287     1   285     1   286 0.99 Fructosamine kinase
APH                  PF01636.18   239 sp|P77739|YNIA_ECOLI -            286   4.1e-21   75.8   3.6   1   1   7.5e-25   5.6e-21   75.3   3.6     4   223    23   239    21   251 0.87 Phosphotransferase enzyme family
ABC_tran             PF00005.22   137 sp|P76909|YNJD_ECOLI -            217   9.4e-29  100.4   0.0   1   1   1.7e-31   1.2e-28  100.0   0.0     1   136    17   161    17   162 0.90 ABC transporter
AAA_25               PF13481.1    194 sp|P76909|YNJD_ECOLI -            217   2.5e-05   23.7   0.0   1   1   5.8e-08   4.3e-05   23.0   0.0    29    66    23    72     2    85 0.77 AAA domain
AAA_21               PF13304.1    303 sp|P76909|YNJD_ECOLI -            217   3.3e-05   24.0   0.0   2   2   2.5e-05     0.018   14.9   0.0   228   287   125   181    63   195 0.81 AAA domain
AAA_16               PF13191.1    185 sp|P76909|YNJD_ECOLI -            217   0.00029   20.8   3.2   1   1   1.6e-06    0.0012   18.8   3.2    12   169    16   206    13   212 0.44 AAA ATPase domain
AAA_29               PF13555.1     62 sp|P76909|YNJD_ECOLI -            217   0.00062   19.2   0.1   1   1   1.8e-06    0.0013   18.2   0.1    16    40    21    44    15    52 0.84 P-loop containing region of AAA domain
DUF258               PF03193.11   161 sp|P76909|YNJD_ECOLI -            217   0.00099   18.3   0.0   1   1   2.1e-06    0.0016   17.6   0.0    23    59    14    51     3    85 0.83 Protein of unknown function, DUF258
SbcCD_C              PF13558.1     90 sp|P76909|YNJD_ECOLI -            217    0.0017   18.2   0.2   1   1   2.4e-05     0.018   14.9   0.1    21    80   122   168   106   175 0.78 Putative exonuclease SbcCD, C subunit
NACHT                PF05729.7    166 sp|P76909|YNJD_ECOLI -            217      0.01   15.4   0.0   1   1   2.6e-05      0.02   14.5   0.0     2    27    29    54    28    66 0.90 NACHT domain
RNA_helicase         PF00910.17   107 sp|P76909|YNJD_ECOLI -            217     0.013   15.6   0.0   1   1   2.9e-05     0.021   14.9   0.0     2    38    31    65    30    92 0.73 RNA helicase
AAA_33               PF13671.1    143 sp|P76909|YNJD_ECOLI -            217     0.019   14.8   0.3   1   1   0.00012     0.086   12.7   0.3     2    33    30   119    29   195 0.54 AAA domain
AAA_22               PF13401.1    131 sp|P76909|YNJD_ECOLI -            217     0.053   13.6   0.3   1   1   0.00016      0.12   12.5   0.3     4    24    27    47    24   183 0.86 AAA domain
AAA_23               PF13476.1    202 sp|P76909|YNJD_ECOLI -            217     0.061   13.6   0.0   1   1   0.00011      0.08   13.2   0.0    14    43    19    51     9    89 0.85 AAA domain
UPF0079              PF02367.12   123 sp|P76909|YNJD_ECOLI -            217     0.069   12.7   0.0   1   1   0.00016      0.12   12.0   0.0     7    41    19    53    14    59 0.82 Uncharacterised P-loop hydrolase UPF0079
AAA_14               PF13173.1    128 sp|P76909|YNJD_ECOLI -            217      0.07   13.0   0.0   1   1   0.00015      0.11   12.3   0.0     2    27    27    52    26   109 0.80 AAA domain
Rad17                PF03215.10   519 sp|P76909|YNJD_ECOLI -            217     0.076   11.6   0.0   1   1   0.00014      0.11   11.1   0.0    44    63    26    45    13    77 0.72 Rad17 cell cycle checkpoint protein
NB-ARC               PF00931.17   287 sp|P76909|YNJD_ECOLI -            217      0.14   11.0   0.0   1   1   0.00026      0.19   10.5   0.0    18    37    26    45    14    60 0.85 NB-ARC domain
ArgK                 PF03308.11   267 sp|P76909|YNJD_ECOLI -            217      0.15   10.7   0.0   1   1   0.00026      0.19   10.4   0.0    17    56    15    54     4   109 0.72 ArgK protein
Arch_ATPase          PF01637.13   234 sp|P76909|YNJD_ECOLI -            217       0.2   11.3   0.0   1   1   0.00039      0.29   10.8   0.0    20    44    27    51    17    69 0.84 Archaeal ATPase
CDP-OH_P_transf      PF01066.16   101 sp|P76226|YNJF_ECOLI -            206   4.2e-09   36.6  15.1   1   1   1.4e-12     2e-08   34.4  15.1     3    79    26   115    24   200 0.81 CDP-alcohol phosphatidyltransferase
Helicase_C_2         PF13307.1    167 sp|P76257|YOAA_ECOLI -            636   6.6e-39  133.5   0.0   1   1   7.7e-42   1.3e-38  132.6   0.0     3   166   458   616   456   617 0.97 Helicase C-terminal domain
ResIII               PF04851.10   184 sp|P76257|YOAA_ECOLI -            636   8.6e-10   38.7   0.1   1   2   2.4e-09   3.9e-06   26.8   0.0     2    69    18    82    17   106 0.90 Type III restriction enzyme, res subunit
ResIII               PF04851.10   184 sp|P76257|YOAA_ECOLI -            636   8.6e-10   38.7   0.1   2   2   0.00051      0.85    9.4   0.0   141   164   213   244   173   269 0.71 Type III restriction enzyme, res subunit
DEAD                 PF00270.24   169 sp|P76257|YOAA_ECOLI -            636   4.8e-09   35.9   2.6   1   3   1.9e-08   3.1e-05   23.5   0.2     9    78    33   100    24   127 0.72 DEAD/DEAH box helicase
DEAD_2               PF06733.10   174 sp|P76257|YOAA_ECOLI -            636   8.9e-06   25.2   0.0   1   1   9.8e-09   1.6e-05   24.3   0.0   112   174   183   247   169   247 0.88 DEAD_2
AAA_19               PF13245.1     76 sp|P76257|YOAA_ECOLI -            636    0.0007   19.2   0.5   1   2   2.3e-06    0.0038   16.9   0.2     2    33    30    61    29    90 0.75 Part of AAA domain
DUF2075              PF09848.4    352 sp|P76257|YOAA_ECOLI -            636     0.012   14.6   0.4   2   2   9.9e-05      0.16   10.8   0.1    82   116   217   252   183   275 0.83 Uncharacterized conserved protein (DUF2075)
UvrD-helicase        PF00580.16   315 sp|P76257|YOAA_ECOLI -            636      0.08   12.2   0.2   1   1   9.1e-05      0.15   11.3   0.2     7    29    33    54    27    67 0.86 UvrD/REP helicase N-terminal domain
POTRA_2              PF08479.6     76 sp|P76257|YOAA_ECOLI -            636      0.09   12.4   0.0   1   1   0.00021      0.35   10.5   0.0    15    48   225   259   219   261 0.88 POTRA domain, ShlB-type
PhoH                 PF02562.11   205 sp|P76257|YOAA_ECOLI -            636      0.17   11.0   0.1   1   1   0.00024       0.4    9.8   0.1    11    46    30    65    19    70 0.79 PhoH-like protein
Ribonuc_L-PSP        PF01042.16   121 sp|P0AEB7|YOAB_ECOLI -            114   3.5e-28   97.7   0.5   1   1   2.6e-32   3.9e-28   97.6   0.5     2   121     3   114     2   114 0.96 Endoribonuclease L-PSP
TerC                 PF03741.11   184 sp|P0AEC0|YOAE_ECOLI -            518   1.1e-46  158.5  12.7   1   1   3.3e-50   1.6e-46  158.0  12.7     1   183    14   203    14   204 0.95 Integral membrane protein TerC family
CorC_HlyC            PF03471.12    81 sp|P0AEC0|YOAE_ECOLI -            518   2.6e-18   65.5   0.4   1   1   1.4e-21   6.8e-18   64.2   0.4     4    79   434   509   431   511 0.92 Transporter associated domain
CBS                  PF00571.23    57 sp|P0AEC0|YOAE_ECOLI -            518   1.4e-09   37.6   0.2   1   2   1.4e-07    0.0007   19.3   0.0     2    56   301   358   300   359 0.93 CBS domain
CBS                  PF00571.23    57 sp|P0AEC0|YOAE_ECOLI -            518   1.4e-09   37.6   0.2   2   2   1.8e-06    0.0091   15.7   0.1     8    56   371   419   363   420 0.90 CBS domain
UPF0181              PF03701.9     52 sp|P67338|YOAH_ECOLI -             59   2.9e-28   96.8   3.6   1   1   8.8e-32   3.3e-28   96.7   3.6     1    50     1    50     1    52 0.97 Uncharacterised protein family (UPF0181)
DUF3530              PF12048.3    310 sp|P67338|YOAH_ECOLI -             59     0.025   13.5   0.1   1   1   7.3e-06     0.027   13.4   0.1   170   207    10    46     6    57 0.89 Protein of unknown function (DUF3530)
SLT_L                PF14718.1     71 sp|P67338|YOAH_ECOLI -             59     0.036   13.8   0.4   1   1   1.3e-05     0.047   13.4   0.4     3    22     9    28     7    46 0.88 Soluble lytic murein transglycosylase L domain
CopC                 PF04234.7     97 sp|P0AA57|YOBA_ECOLI -            124   2.8e-31  107.9   0.5   1   1   6.7e-35   3.3e-31  107.7   0.5     1    97    27   124    27   124 0.98 CopC domain
Big_5                PF13205.1    107 sp|P0AA57|YOBA_ECOLI -            124   4.7e-05   23.9   0.2   1   1   1.2e-08   5.9e-05   23.6   0.2     7    91    30   112    26   123 0.71 Bacterial Ig-like domain
A2M_N                PF01835.14    99 sp|P0AA57|YOBA_ECOLI -            124     0.021   15.0   0.1   1   1   5.4e-06     0.027   14.7   0.1    40    99    63   123    29   123 0.87 MG2 domain
DUF986               PF06173.7    149 sp|P67601|YOBD_ECOLI -            152     4e-65  218.1   6.4   1   1     6e-69   4.4e-65  218.0   6.4     1   148     4   151     4   152 0.99 Protein of unknown function (DUF986)
Trep_Strep           PF09605.5    186 sp|P67601|YOBD_ECOLI -            152     0.058   13.0   7.3   1   1   9.6e-06     0.071   12.7   7.3     2    88     3    94     2   117 0.76 Hypothetical bacterial integral membrane protein (Trep_Strep)
Plasmid_Txe          PF06769.8     80 sp|P69348|YOEB_ECOLI -             84   1.2e-43  146.7   0.6   1   1   2.8e-47   1.4e-43  146.6   0.6     1    80     5    84     5    84 0.99 Plasmid encoded toxin Txe
Plasmid_stabil       PF05016.9     90 sp|P69348|YOEB_ECOLI -             84   4.9e-05   23.6   0.0   1   1   1.1e-08   5.4e-05   23.5   0.0    16    78    12    77     4    83 0.82 Plasmid stabilisation system protein
Plasmid_killer       PF05015.8     93 sp|P69348|YOEB_ECOLI -             84     0.038   14.1   0.0   1   1   8.2e-06     0.041   14.0   0.0    51    82    42    73     2    83 0.74 Plasmid maintenance system killer protein
adh_short            PF00106.20   167 sp|P33368|YOHF_ECOLI -            253   3.7e-29  101.8   0.7   1   1     1e-32   5.1e-29  101.3   0.7     2   166     4   171     3   172 0.94 short chain dehydrogenase
adh_short_C2         PF13561.1    241 sp|P33368|YOHF_ECOLI -            253   7.1e-26   91.4   0.0   1   1   1.7e-29   8.4e-26   91.2   0.0     3   240     9   243     8   244 0.90 Enoyl-(Acyl carrier protein) reductase
KR                   PF08659.5    181 sp|P33368|YOHF_ECOLI -            253   3.2e-08   33.4   0.4   1   1   1.1e-11   5.5e-08   32.6   0.4     4   161     6   165     4   184 0.84 KR domain
SNARE_assoc          PF09335.6    123 sp|P33366|YOHD_ECOLI -            192   3.4e-18   66.0   1.9   1   1   1.4e-21   3.4e-18   66.0   1.9     3   122    23   143    21   144 0.92 SNARE associated Golgi protein
FixQ                 PF05545.6     49 sp|P33366|YOHD_ECOLI -            192      0.01   15.4   0.1   1   1   4.2e-06      0.01   15.4   0.1     3    36   154   187   150   192 0.87 Cbb3-type cytochrome oxidase component FixQ
DUF95                PF01944.12   173 sp|P33366|YOHD_ECOLI -            192     0.036   13.7   3.2   1   2   6.2e-05      0.15   11.6   0.2    86   147    15    76     3    99 0.74 Integral membrane protein DUF95
Sugar_tr             PF00083.19   451 sp|P33366|YOHD_ECOLI -            192     0.063   11.8   0.2   1   2   2.6e-05     0.063   11.8   0.2    10    76     8    69     5    75 0.93 Sugar (and other) transporter
LrgA                 PF03788.9     96 sp|P60632|YOHJ_ECOLI -            132     3e-29  100.5  10.2   1   1   7.5e-33   3.7e-29  100.2  10.2     1    95    21   115    21   116 0.98 LrgA family
Glycoprotein_G       PF00802.14   263 sp|P60632|YOHJ_ECOLI -            132      0.19   10.8   1.1   1   1     5e-05      0.25   10.4   1.1     2    46     3    50     2    57 0.83 Pneumovirus attachment glycoprotein G
ABC_tran             PF00005.22   137 sp|P33941|YOJI_ECOLI -            547   7.1e-28   97.6   0.0   1   1   1.1e-30   1.2e-27   96.8   0.0     3   136   341   477   339   478 0.87 ABC transporter
AAA_21               PF13304.1    303 sp|P33941|YOJI_ECOLI -            547   5.6e-09   36.3   0.3   1   2   5.1e-06    0.0054   16.7   0.1     3    45   353   396   351   406 0.71 AAA domain
AAA_21               PF13304.1    303 sp|P33941|YOJI_ECOLI -            547   5.6e-09   36.3   0.3   2   2   3.6e-06    0.0038   17.2   0.0   220   300   434   511   405   514 0.81 AAA domain
SMC_N                PF02463.14   220 sp|P33941|YOJI_ECOLI -            547   3.9e-05   22.9   0.1   2   2   2.1e-05     0.022   14.0   0.0   127   213   440   524   377   529 0.80 RecF/RecN/SMC N terminal domain
ABC_membrane         PF00664.18   275 sp|P33941|YOJI_ECOLI -            547   0.00042   19.8   8.6   1   1   5.8e-07   0.00062   19.2   8.2    42   189    47   195    15   253 0.81 ABC transporter transmembrane region
AAA_29               PF13555.1     62 sp|P33941|YOJI_ECOLI -            547     0.011   15.2   4.4   1   1     2e-05     0.021   14.3   2.0    19    39   346   365   317   375 0.88 P-loop containing region of AAA domain
AAA_16               PF13191.1    185 sp|P33941|YOJI_ECOLI -            547     0.011   15.6   0.0   1   1   2.9e-05      0.03   14.2   0.0    22   107   347   459   335   540 0.68 AAA ATPase domain
Pox_A31              PF05771.6    114 sp|P33941|YOJI_ECOLI -            547     0.015   15.1   0.0   1   1   2.9e-05      0.03   14.0   0.0     5    78   176   253   173   268 0.89 Poxvirus A31 protein
AAA_15               PF13175.1    415 sp|P33941|YOJI_ECOLI -            547     0.046   12.7   0.0   2   2   0.00088      0.94    8.4   0.0   355   411   451   509   435   512 0.75 AAA ATPase domain
Methyltransf_30      PF05430.6    124 sp|P33941|YOJI_ECOLI -            547     0.046   13.4   0.1   1   1   0.00012      0.13   11.9   0.0     5    85   419   501   415   505 0.83 S-adenosyl-L-methionine-dependent methyltransferase
AAA_5                PF07728.9    139 sp|P33941|YOJI_ECOLI -            547     0.077   12.7   0.2   1   1   0.00018       0.2   11.4   0.2     2    24   352   375   351   385 0.83 AAA domain (dynein-related subfamily)
AAA_25               PF13481.1    194 sp|P33941|YOJI_ECOLI -            547      0.11   11.9   0.0   1   1   0.00019       0.2   11.0   0.0    30    54   346   370   321   436 0.86 AAA domain
AAA_13               PF13166.1    712 sp|P33941|YOJI_ECOLI -            547      0.11   10.9   0.0   1   1   0.00015      0.16   10.4   0.0    22    41   355   374   346   407 0.83 AAA domain
LrgB                 PF04172.11   215 sp|P0AD19|YOHK_ECOLI -            231   5.1e-83  277.4  15.0   1   1   7.8e-87   5.8e-83  277.2  15.0     1   215    12   226    12   226 0.99 LrgB-like family
DUF677               PF05055.7    336 sp|P0AD19|YOHK_ECOLI -            231      0.11   11.0   1.6   1   1     2e-05      0.15   10.7   1.6   169   221    77   133    60   175 0.87 Protein of unknown function (DUF677)
DUF2802              PF10975.3     70 sp|V9HVX0|YPAA_ECOLI -             61     0.033   13.9   0.2   1   1   2.9e-06     0.043   13.5   0.2    36    59    31    54     2    59 0.84 Protein of unknown function (DUF2802)
Peptidase_M24        PF00557.19   207 sp|P76524|YPDF_ECOLI -            361   2.3e-62  210.2   0.1   1   1   8.2e-66     3e-62  209.8   0.1     1   207   134   342   134   342 0.94 Metallopeptidase family M24
Creatinase_N         PF01321.13   132 sp|P76524|YPDF_ECOLI -            361   3.1e-14   53.6   0.1   1   1   1.7e-17   6.1e-14   52.6   0.1     2   131     4   126     4   127 0.91 Creatinase/Prolidase N-terminal domain
TrkA_C               PF02080.16    71 sp|P76524|YPDF_ECOLI -            361      0.13   11.8   0.0   1   1   0.00011      0.42   10.2   0.0    32    56   295   320   291   321 0.83 TrkA-C domain
HhH-GPD              PF00730.20   108 sp|P76524|YPDF_ECOLI -            361      0.14   12.4   0.0   1   1   6.1e-05      0.23   11.7   0.0     6    66    97   158    95   312 0.85 HhH-GPD superfamily base excision DNA repair protein
Peptidase_M42        PF05343.9    292 sp|P77585|YPDE_ECOLI -            345   2.8e-84  282.3   0.0   1   1   1.2e-87   4.3e-84  281.7   0.0     1   292    43   325    43   325 0.97 M42 glutamyl aminopeptidase
Peptidase_M20        PF01546.23   189 sp|P77585|YPDE_ECOLI -            345   1.6e-08   34.2   0.0   1   1     7e-12   2.6e-08   33.6   0.0    34   187   164   330   162   332 0.85 Peptidase family M20/M25/M40
Peptidase_M18        PF02127.10   432 sp|P77585|YPDE_ECOLI -            345   2.7e-05   22.8   0.0   2   2   3.9e-08   0.00015   20.4   0.1   331   431   233   329   211   330 0.86 Aminopeptidase I zinc metalloprotease (M18)
Peptidase_M28        PF04389.12   179 sp|P77585|YPDE_ECOLI -            345    0.0004   20.1   0.0   2   2   2.2e-06    0.0083   15.8   0.0    17   157   156   304   148   324 0.65 Peptidase family M28
Acetyltransf_1       PF00583.19    83 sp|P76539|YPEA_ECOLI -            141   1.7e-17   63.1   0.1   1   1   2.1e-20   2.8e-17   62.5   0.1     1    83    48   124    48   124 0.97 Acetyltransferase (GNAT) family
Acetyltransf_10      PF13673.1    117 sp|P76539|YPEA_ECOLI -            141   8.2e-14   51.7   0.0   1   1   7.1e-17   9.5e-14   51.5   0.0    31   117    30   123    10   123 0.86 Acetyltransferase (GNAT) domain
Acetyltransf_7       PF13508.1     79 sp|P76539|YPEA_ECOLI -            141     2e-11   43.8   0.0   1   1     2e-14   2.7e-11   43.4   0.0     4    78    44   124    41   125 0.84 Acetyltransferase (GNAT) domain
Acetyltransf_9       PF13527.1    127 sp|P76539|YPEA_ECOLI -            141   2.2e-08   33.9   0.1   1   1   3.5e-10   4.7e-07   29.7   0.1     1   127     2   126     2   126 0.81 Acetyltransferase (GNAT) domain
FR47                 PF08445.5     86 sp|P76539|YPEA_ECOLI -            141   7.6e-08   32.0   0.0   1   1   8.1e-11   1.1e-07   31.5   0.0    22    80    67   126    51   130 0.89 FR47-like protein
Acetyltransf_6       PF13480.1    142 sp|P76539|YPEA_ECOLI -            141     2e-06   27.7   0.1   1   1   2.3e-09   3.1e-06   27.2   0.1    72   131    44   103     2   111 0.90 Acetyltransferase (GNAT) domain
Acetyltransf_8       PF13523.1    152 sp|P76539|YPEA_ECOLI -            141   2.3e-06   27.5   0.0   1   1   2.3e-09   3.1e-06   27.1   0.0     2   143     4   130     3   136 0.79 Acetyltransferase (GNAT) domain
Acetyltransf_4       PF13420.1    155 sp|P76539|YPEA_ECOLI -            141   0.00014   21.8   0.0   1   1   1.7e-07   0.00022   21.1   0.0     1   137     3   126     3   131 0.82 Acetyltransferase (GNAT) domain
DUF3749              PF12568.3    128 sp|P76539|YPEA_ECOLI -            141     0.002   17.7   0.0   1   1   1.7e-06    0.0023   17.5   0.0    15    93    20   103    12   127 0.80 Acetyltransferase (GNAT) domain
Acetyltransf_3       PF13302.1    142 sp|P76539|YPEA_ECOLI -            141    0.0024   18.0   0.0   1   1   2.8e-06    0.0038   17.4   0.0     5   141     4   123     1   124 0.67 Acetyltransferase (GNAT) domain
Acetyltransf_CG      PF14542.1     78 sp|P76539|YPEA_ECOLI -            141     0.029   14.2   0.0   1   1   3.1e-05     0.042   13.7   0.0    20    47    64    91    46   103 0.78 GCN5-related N-acetyl-transferase
Abhydrolase_2        PF02230.11   216 sp|P76561|YPFH_ECOLI -            232   2.3e-53  180.8   0.0   1   1   1.3e-56   2.7e-53  180.6   0.0     2   216     4   209     3   209 0.97 Phospholipase/Carboxylesterase
DLH                  PF01738.13   218 sp|P76561|YPFH_ECOLI -            232     8e-12   44.9   0.0   1   1   5.1e-15   1.1e-11   44.4   0.0    72   194    77   197    61   217 0.89 Dienelactone hydrolase family
Abhydrolase_5        PF12695.2    145 sp|P76561|YPFH_ECOLI -            232   6.1e-09   35.7   0.4   1   1     4e-12   8.4e-09   35.3   0.4     2   144    19   191    18   192 0.70 Alpha/beta hydrolase family
Abhydrolase_6        PF12697.2    228 sp|P76561|YPFH_ECOLI -            232   2.4e-07   30.8   1.9   1   2   3.1e-05     0.065   13.1   0.1    63    98    91   135    19   142 0.56 Alpha/beta hydrolase family
Abhydrolase_6        PF12697.2    228 sp|P76561|YPFH_ECOLI -            232   2.4e-07   30.8   1.9   2   2   1.3e-06    0.0027   17.6   0.1   170   217   142   193   134   196 0.88 Alpha/beta hydrolase family
Peptidase_S9         PF00326.16   213 sp|P76561|YPFH_ECOLI -            232   1.3e-06   27.8   0.6   2   3   0.00027      0.57    9.3   0.1    42    94    81   133    58   147 0.82 Prolyl oligopeptidase family
Peptidase_S9         PF00326.16   213 sp|P76561|YPFH_ECOLI -            232   1.3e-06   27.8   0.6   3   3   3.7e-06    0.0079   15.4   0.0   143   194   147   198   135   217 0.84 Prolyl oligopeptidase family
FSH1                 PF03959.8    212 sp|P76561|YPFH_ECOLI -            232     0.016   14.6   0.1   1   1     2e-05     0.042   13.2   0.1    68   116    60   117    48   176 0.75 Serine hydrolase (FSH1)
UPF0370              PF13980.1     63 sp|Q2EET2|YPFN_ECOLI -             66   3.7e-34  116.3  11.7   1   1   2.6e-38   3.9e-34  116.2  11.7     1    61     1    62     1    66 0.94 Uncharacterised protein family (UPF0370)
DoxX                 PF07681.7     85 sp|P0AD47|YPHA_ECOLI -            140   8.2e-17   61.4  14.4   1   1   5.6e-20   1.4e-16   60.6  14.4     1    85    16    98    16    98 0.98 DoxX
SURF4                PF02077.10   267 sp|P0AD47|YPHA_ECOLI -            140   4.6e-08   32.7   5.8   1   1   7.8e-11   1.9e-07   30.7   5.8   154   262    15   139     8   140 0.74 SURF4 family
DoxX_2               PF13564.1    103 sp|P0AD47|YPHA_ECOLI -            140    0.0016   18.3  12.1   1   1   1.2e-06    0.0029   17.5  11.9     3    93    21   110    19   131 0.83 DoxX-like family
Marek_A              PF02124.10   211 sp|P0AD47|YPHA_ECOLI -            140       0.4   10.1   0.9   1   1   0.00025      0.63    9.4   0.9   158   203    31    74    15    79 0.85 Marek's disease glycoprotein A
DUF417               PF04224.7    175 sp|P0AD47|YPHA_ECOLI -            140       1.3    8.3   7.7   1   2   0.00012      0.28   10.5   1.0    15    51    17    55    11    60 0.76 Protein of unknown function, DUF417
DoxD                 PF04173.8    167 sp|P0AD47|YPHA_ECOLI -            140       3.4    7.3   9.0   2   2   0.00011      0.28   10.8   2.5    67   110    57   102    43   139 0.54 TQO small subunit DoxD
ADH_N                PF08240.7    109 sp|P77360|YPHC_ECOLI -            353   2.7e-29  101.1   0.7   1   1   2.1e-32   5.1e-29  100.2   0.7     2   107    28   142    27   144 0.91 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N           PF00107.21   130 sp|P77360|YPHC_ECOLI -            353   1.7e-26   92.3   0.2   1   1     1e-29   2.6e-26   91.6   0.2     1   129   185   313   185   314 0.95 Zinc-binding dehydrogenase
ADH_zinc_N_2         PF13602.1    127 sp|P77360|YPHC_ECOLI -            353   5.3e-06   27.3   0.0   1   1     4e-09   9.8e-06   26.4   0.0    15   127   239   349   218   349 0.70 Zinc-binding dehydrogenase
UDPG_MGDP_dh_N       PF03721.9    185 sp|P77360|YPHC_ECOLI -            353     0.081   12.3   0.1   1   1   5.8e-05      0.14   11.4   0.1     2    41   177   217   176   222 0.88 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
AlaDh_PNT_C          PF01262.16   168 sp|P77360|YPHC_ECOLI -            353      0.11   12.1   0.2   1   1   7.3e-05      0.18   11.3   0.2    22    63   177   219   162   223 0.81 Alanine dehydrogenase/PNT, C-terminal domain
Methyltransf_18      PF12847.2    112 sp|P77360|YPHC_ECOLI -            353      0.12   13.0   0.0   1   1   8.3e-05       0.2   12.2   0.0     5    43   178   217   175   295 0.81 Methyltransferase domain
ABC_tran             PF00005.22   137 sp|P77509|YPHE_ECOLI -            503   2.2e-57  193.1   0.2   1   2   6.5e-34   5.1e-31  107.8   0.0     1   137    26   178    26   178 0.96 ABC transporter
ABC_tran             PF00005.22   137 sp|P77509|YPHE_ECOLI -            503   2.2e-57  193.1   0.2   2   2   1.9e-26   1.5e-23   83.6   0.0     1   136   278   432   278   433 0.84 ABC transporter
AAA_21               PF13304.1    303 sp|P77509|YPHE_ECOLI -            503   1.8e-07   31.4   0.0   1   3    0.0001     0.078   12.9   0.0     3    19    40    56    40    77 0.82 AAA domain
DUF258               PF03193.11   161 sp|P77509|YPHE_ECOLI -            503   3.4e-07   29.5   0.1   1   2   5.9e-07   0.00046   19.4   0.0    25    66    25    67    10    93 0.80 Protein of unknown function, DUF258
AAA_29               PF13555.1     62 sp|P77509|YPHE_ECOLI -            503    0.0001   21.7   0.4   1   2   3.9e-06     0.003   17.0   0.1    15    40    29    53    25    60 0.83 P-loop containing region of AAA domain
MMR_HSR1             PF01926.18   116 sp|P77509|YPHE_ECOLI -            503   0.00013   21.9   0.5   1   2   2.7e-05     0.021   14.7   0.0     3    29    40    66    39   211 0.84 50S ribosome-binding GTPase
AAA_25               PF13481.1    194 sp|P77509|YPHE_ECOLI -            503   0.00079   18.8   2.1   1   1   4.7e-05     0.037   13.4   0.9    30   188    33   207    24   211 0.63 AAA domain
Miro                 PF08477.8    119 sp|P77509|YPHE_ECOLI -            503    0.0027   18.1   0.0   1   2   8.6e-05     0.067   13.6   0.0     4    37    41    80    40   101 0.76 Miro-like protein
AAA_13               PF13166.1    712 sp|P77509|YPHE_ECOLI -            503     0.004   15.6   0.0   1   2   0.00076      0.59    8.5   0.0    22    41    42    61    25    91 0.84 AAA domain
AAA_15               PF13175.1    415 sp|P77509|YPHE_ECOLI -            503    0.0046   16.0   0.0   1   3   0.00095      0.74    8.7   0.0    15    42    29    56    16    82 0.82 AAA ATPase domain
AAA_23               PF13476.1    202 sp|P77509|YPHE_ECOLI -            503     0.021   15.1   0.2   1   1   6.9e-05     0.054   13.8   0.1    11    39    27    56    22    59 0.80 AAA domain
AAA_33               PF13671.1    143 sp|P77509|YPHE_ECOLI -            503      0.11   12.3   0.4   1   1    0.0012      0.94    9.3   0.1     4    20    41    57    38   214 0.78 AAA domain
AAA_16               PF13191.1    185 sp|P77509|YPHE_ECOLI -            503      0.21   11.5   2.5   1   1     0.001      0.81    9.6   0.6    28   169    40   187    25   203 0.55 AAA ATPase domain
Peripla_BP_4         PF13407.1    257 sp|P77269|YPHF_ECOLI -            327   3.6e-31  108.4  11.2   1   1   5.9e-35   4.4e-31  108.1  11.2    10   255    40   294    33   300 0.89 Periplasmic binding protein domain
Peripla_BP_1         PF00532.16   279 sp|P77269|YPHF_ECOLI -            327   4.5e-17   62.1   1.6   1   1   8.2e-21   6.1e-17   61.7   1.6     3   279    32   312    30   312 0.82 Periplasmic binding proteins and sugar binding domain of LacI family
ROK                  PF00480.15   179 sp|P76586|YPHH_ECOLI -            397   1.7e-27   96.4   0.0   1   1   7.8e-31   2.3e-27   95.9   0.0    26   179   111   267    85   267 0.89 ROK family
MarR                 PF01047.17    59 sp|P76586|YPHH_ECOLI -            397    0.0001   21.9   0.2   1   1   7.9e-08   0.00023   20.7   0.2     4    43    14    53    12    55 0.94 MarR family
HTH_24               PF13412.1     48 sp|P76586|YPHH_ECOLI -            397   0.00017   20.8   0.7   1   1   1.6e-07   0.00049   19.4   0.7     8    44    18    54    13    57 0.96 Winged helix-turn-helix DNA-binding
MarR_2               PF12802.2     62 sp|P76586|YPHH_ECOLI -            397     0.049   13.3   0.1   1   1   3.9e-05      0.11   12.1   0.1    10    48    18    54    15    65 0.85 MarR family
HTH_IclR             PF09339.5     52 sp|P76586|YPHH_ECOLI -            397     0.053   13.1   0.0   1   1     4e-05      0.12   12.0   0.0     8    46    18    55    17    59 0.93 IclR helix-turn-helix domain
BPD_transp_2         PF02653.11   267 sp|P77315|YPHD_ECOLI -            332   2.9e-44  151.0  44.0   2   2   1.9e-48   2.9e-44  151.0  44.0     3   267    54   317    52   317 0.94 Branched-chain amino acid transport system / permease component
DUF905               PF06006.7     71 sp|P58095|YPJI_ECOLI -             90   3.5e-32  109.5   0.0   1   1   2.8e-36   4.2e-32  109.3   0.0     3    71    16    85    14    85 0.96 Bacterial protein of unknown function (DUF905)
DUF1219              PF06755.7    117 sp|Q46953|YPJF_ECOLI -            109   3.6e-58  194.1   0.0   1   1   2.6e-62   3.9e-58  194.0   0.0     1   108     1   108     1   109 0.99 Protein of unknown function (DUF1219)
DUF987               PF06174.6     66 sp|P58033|YPJJ_ECOLI -             66   1.2e-44  149.6   1.4   1   1   8.5e-49   1.3e-44  149.5   1.4     1    66     1    66     1    66 0.99 Protein of unknown function (DUF987)
HAD_2                PF13419.1    176 sp|P77475|YQAB_ECOLI -            188   1.6e-25   90.3   0.1   1   1     5e-29   1.9e-25   90.1   0.1     1   174     8   183     8   185 0.89 Haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P77475|YQAB_ECOLI -            188   7.7e-14   52.6   0.1   1   1   3.1e-17   1.2e-13   52.0   0.1     4   215     8   179     5   179 0.89 haloacid dehalogenase-like hydrolase
Hydrolase_like       PF13242.1     75 sp|P77475|YQAB_ECOLI -            188   2.3e-06   27.2   0.1   1   1   1.6e-09   5.9e-06   25.8   0.0     3    48   141   185   139   186 0.94 HAD-hyrolase-like
HAD                  PF12710.2    192 sp|P77475|YQAB_ECOLI -            188     0.016   15.3   0.0   1   1   5.9e-06     0.022   14.9   0.0     2   130     9   127     8   181 0.54 haloacid dehalogenase-like hydrolase
Pmp3                 PF01679.12    51 sp|P0AE42|YQAE_ECOLI -             52   7.1e-21   73.6   7.8   1   1   4.9e-25   7.3e-21   73.6   7.8     3    49     3    49     1    51 0.95 Proteolipid membrane potential modulator
Flavodoxin_1         PF00258.20   143 sp|P65367|YQCA_ECOLI -            149   1.8e-25   89.6   0.0   1   1   1.4e-29     2e-25   89.4   0.0     1   141     6   138     6   140 0.89 Flavodoxin
Trp_Tyr_perm         PF03222.8    394 sp|P63340|YQEG_ECOLI -            409   3.4e-11   42.6  35.6   1   1   1.1e-14   4.2e-11   42.2  35.6    12   360    16   379     7   408 0.78 Tryptophan/tyrosine permease family
Aa_trans             PF01490.13   409 sp|P63340|YQEG_ECOLI -            409   1.1e-05   24.0  40.7   1   1   1.1e-08     4e-05   22.2  40.7    10   399    14   407    10   409 0.68 Transmembrane amino acid transporter protein
AA_permease_2        PF13520.1    426 sp|P63340|YQEG_ECOLI -            409     0.031   12.8  45.7   1   1   1.4e-05     0.051   12.0  45.7     9   401    15   408    12   409 0.68 Amino acid permease
Thiolase_N           PF00108.18   264 sp|Q46939|YQEF_ECOLI -            393  6.9e-110  366.1   1.9   1   1  2.4e-113  8.7e-110  365.8   1.9     1   263     1   261     1   262 0.99 Thiolase, N-terminal domain
Thiolase_C           PF02803.13   123 sp|Q46939|YQEF_ECOLI -            393   1.8e-52  175.9   0.3   1   1     1e-55   3.8e-52  174.8   0.3     2   123   270   391   269   391 0.98 Thiolase, C-terminal domain
ketoacyl-synt        PF00109.21   254 sp|Q46939|YQEF_ECOLI -            393   3.7e-06   26.6   2.0   1   2   1.3e-09   4.8e-06   26.2   0.4   169   207    81   119    79   136 0.87 Beta-ketoacyl synthase, N-terminal domain
ACP_syn_III          PF08545.5     80 sp|Q46939|YQEF_ECOLI -            393    0.0025   17.4   0.4   1   2   1.9e-05     0.071   12.7   0.1     3    40    84   121    82   136 0.86 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
HlyIII               PF03006.15   222 sp|P67153|YQFA_ECOLI -            219   2.4e-49  167.7  22.5   1   1   3.6e-53   2.7e-49  167.5  22.5     1   222    11   209    11   209 0.95 Haemolysin-III related
ASCH                 PF04266.9    105 sp|P67603|YQFB_ECOLI -            103     2e-16   60.2   0.1   1   1   7.6e-20   2.3e-16   60.1   0.1     1   102     6   101     6   103 0.92 ASCH domain
DUF3850              PF12961.2     72 sp|P67603|YQFB_ECOLI -            103      0.02   14.8   0.2   1   2   1.4e-05     0.041   13.8   0.1     8    55    11    56     5    82 0.77 Domain of Unknown Function with PDB structure (DUF3850)
Cpn10                PF00166.16    93 sp|P67603|YQFB_ECOLI -            103     0.038   13.9   0.0   1   1   1.7e-05      0.05   13.5   0.0    23    91    22    86    13    89 0.84 Chaperonin 10 Kd subunit
SH3_9                PF14604.1     49 sp|P67603|YQFB_ECOLI -            103     0.062   12.8   0.0   1   1   3.1e-05     0.093   12.3   0.0     8    32    26    50    24    61 0.84 Variant SH3 domain
PK                   PF00224.16   348 sp|P67603|YQFB_ECOLI -            103     0.072   11.6   0.1   1   1   2.7e-05     0.081   11.5   0.1    69   125    36    93    21    99 0.86 Pyruvate kinase, barrel domain
YqgB                 PF11036.3     43 sp|P64567|YQGB_ECOLI -             43   2.4e-33  113.3   0.7   1   1   1.7e-37   2.6e-33  113.2   0.7     1    43     1    43     1    43 0.99 Virulence promoting factor
DUF179               PF02622.10   161 sp|P0A8W5|YQGE_ECOLI -            187   3.6e-53  179.4   0.0   1   1   2.8e-57   4.1e-53  179.3   0.0     1   161    11   174    11   174 0.94 Uncharacterized ACR, COG1678
UPF0114              PF03350.11   124 sp|P67244|YQHA_ECOLI -            164   4.3e-39  133.2   6.1   1   1   4.5e-43   6.7e-39  132.6   6.1     2   124     9   126     8   126 0.99 Uncharacterized protein family, UPF0114
Fe-ADH               PF00465.14   366 sp|Q46856|YQHD_ECOLI -            387   4.4e-88  295.3   0.1   1   1     1e-91   5.1e-88  295.1   0.1     1   351     9   363     9   377 0.91 Iron-containing alcohol dehydrogenase
Fe-ADH_2             PF13685.1    250 sp|Q46856|YQHD_ECOLI -            387   2.5e-13   49.8   0.1   1   2   5.7e-11   2.8e-07   30.1   0.0     5   101    17   111    13   114 0.81 Iron-containing alcohol dehydrogenase
Fe-ADH_2             PF13685.1    250 sp|Q46856|YQHD_ECOLI -            387   2.5e-13   49.8   0.1   2   2   3.3e-07    0.0017   17.7   0.0    99   240   130   277   127   285 0.87 Iron-containing alcohol dehydrogenase
DHQ_synthase         PF01761.15   261 sp|Q46856|YQHD_ECOLI -            387    0.0092   14.9   0.0   1   2   6.3e-05      0.31    9.9   0.0    19    52    74   107    66   110 0.77 3-dehydroquinate synthase
Usher                PF00577.15   552 sp|P76655|YQIG_ECOLI -            821  1.2e-176  588.7  30.2   1   1  3.9e-180  1.4e-176  588.4  30.2     3   551   182   733   180   734 0.96 Outer membrane usher protein
PapC_N               PF13954.1    146 sp|P76655|YQIG_ECOLI -            821   3.9e-38  130.3   0.2   1   1   2.9e-41   1.1e-37  128.8   0.2     1   146    21   166    21   166 0.98 PapC N-terminal domain
PapC_C               PF13953.1     68 sp|P76655|YQIG_ECOLI -            821   3.2e-14   52.3   0.2   2   2   4.8e-16   1.8e-12   46.7   0.0     3    59   746   800   745   807 0.91 PapC C-terminal domain
DUF3410              PF11890.3     82 sp|P76655|YQIG_ECOLI -            821      0.12   12.0   0.6   1   1   9.5e-05      0.35   10.5   0.1    21    70   402   449   386   459 0.83 Domain of unknown function (DUF3410)
PapD_N               PF00345.15   122 sp|P77616|YQIH_ECOLI -            249   4.1e-36  123.4   1.8   1   1   1.4e-39   7.1e-36  122.6   1.8     2   121    27   144    26   145 0.90 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_C               PF02753.12    68 sp|P77616|YQIH_ECOLI -            249   7.5e-08   32.0   2.3   1   1   1.7e-11   8.6e-08   31.9   1.0     2    64   168   227   167   231 0.86 Pili assembly chaperone PapD, C-terminal domain
Exostosin            PF03016.10   302 sp|P77616|YQIH_ECOLI -            249     0.061   12.3   0.0   1   1   1.5e-05     0.076   12.0   0.0   138   196    45   122    14   148 0.72 Exostosin family
SNARE_assoc          PF09335.6    123 sp|P0AA63|YQJA_ECOLI -            220   1.7e-22   79.8   5.4   1   2   1.2e-26   1.7e-22   79.8   5.4     1   123    48   174    48   174 0.96 SNARE associated Golgi protein
DUF883               PF05957.8     94 sp|P64581|YQJD_ECOLI -            101   1.2e-31  108.9   1.7   1   1   1.4e-34   1.4e-31  108.7   1.7     2    94     9   101     8   101 0.99 Bacterial protein of unknown function (DUF883)
Apolipoprotein       PF01442.13   202 sp|P64581|YQJD_ECOLI -            101   0.00058   19.4   2.7   1   1   7.3e-07   0.00072   19.1   2.7    37   112     4    79     2    80 0.96 Apolipoprotein A1/A4/E domain
ApoLp-III            PF07464.6    155 sp|P64581|YQJD_ECOLI -            101     0.004   17.1   2.3   1   1   4.5e-06    0.0045   17.0   2.3    23    92     5    74     1    79 0.86 Apolipophorin-III precursor (apoLp-III)
Gly-zipper_OmpA      PF13436.1    118 sp|P64581|YQJD_ECOLI -            101     0.019   14.6   0.0   1   1   2.4e-05     0.024   14.3   0.0    33    90    39    97    18   100 0.69 Glycine-zipper containing OmpA-like membrane domain
DUF2077              PF09850.4    206 sp|P64581|YQJD_ECOLI -            101     0.022   14.1   0.1   2   2   4.6e-05     0.045   13.1   0.0   136   199    30    97    25   100 0.74 Uncharacterized protein conserved in bacteria (DUF2077)
DUF4404              PF14357.1     85 sp|P64581|YQJD_ECOLI -            101      0.03   14.7   1.5   1   1   4.4e-05     0.044   14.2   1.5     2    40    10    49     2    76 0.57 Domain of unknown function (DUF4404)
HemX                 PF04375.9    372 sp|P64581|YQJD_ECOLI -            101     0.032   12.8   0.4   1   1     4e-05     0.039   12.5   0.4    59   122     4    73     2    86 0.75 HemX
Spore_III_AB         PF09548.5    170 sp|P64581|YQJD_ECOLI -            101     0.053   13.2   0.4   1   2   0.00029      0.28   10.9   0.3    38    81     8    51     4    66 0.88 Stage III sporulation protein AB (spore_III_AB)
Prominin             PF05478.6    807 sp|P64581|YQJD_ECOLI -            101     0.076   10.5   0.0   1   1   9.1e-05      0.09   10.3   0.0   343   430    12    97     3    99 0.87 Prominin
DUF543               PF04418.7     75 sp|P64581|YQJD_ECOLI -            101     0.078   12.9   1.0   1   1   0.00017      0.17   11.8   1.0    23    50    74   101     1   101 0.84 Domain of unknown function (DUF543)
DUF2317              PF10079.4    542 sp|P64581|YQJD_ECOLI -            101      0.12   10.9   1.7   1   1   0.00014      0.14   10.7   1.7   437   486     5    54     2    66 0.86 Uncharacterized protein conserved in bacteria (DUF2317)
PLAC9                PF15205.1     74 sp|P64581|YQJD_ECOLI -            101      0.14   12.4   0.2   1   1   0.00023      0.23   11.7   0.2    35    57     4    26     2    31 0.90 Placenta-specific protein 9
Remorin_C            PF03763.8    112 sp|P64581|YQJD_ECOLI -            101      0.14   11.6   4.5   1   1   0.00018      0.17   11.3   4.5    38    89     5    56     3    79 0.81 Remorin, C-terminal region
DoxX                 PF07681.7     85 sp|P42619|YQJF_ECOLI -            130   1.7e-18   66.8  13.4   1   1   9.6e-22   2.8e-18   66.0  13.4     2    84     9    87     8    88 0.98 DoxX
DUF1270              PF06900.6     53 sp|P42619|YQJF_ECOLI -            130   0.00028   20.9   5.7   1   2   6.3e-05      0.19   11.9   0.1    18    39    11    33     7    38 0.83 Protein of unknown function (DUF1270)
DUF1270              PF06900.6     53 sp|P42619|YQJF_ECOLI -            130   0.00028   20.9   5.7   2   2   0.00014      0.42   10.7   1.7    10    48    51    89    48    93 0.80 Protein of unknown function (DUF1270)
DoxX_2               PF13564.1    103 sp|P42619|YQJF_ECOLI -            130   0.00029   20.7   9.2   1   1   1.2e-07   0.00037   20.4   9.2     3    92    13   100    11   115 0.78 DoxX-like family
DoxD                 PF04173.8    167 sp|P42619|YQJF_ECOLI -            130    0.0019   17.9   1.6   2   2   6.3e-07    0.0019   17.9   1.6    70   147    50   129    38   130 0.71 TQO small subunit DoxD
SURF4                PF02077.10   267 sp|P42619|YQJF_ECOLI -            130    0.0025   17.2   1.5   1   1   1.2e-06    0.0037   16.6   1.5   226   267    88   130     2   130 0.74 SURF4 family
FAD_binding_9        PF08021.6    117 sp|Q46871|YQJH_ECOLI -            254     1e-33  115.7   0.0   1   2   7.5e-37   2.8e-33  114.3   0.0     1   116    21   132    21   133 0.96 Siderophore-interacting FAD-binding domain
SIP                  PF04954.8    119 sp|Q46871|YQJH_ECOLI -            254   5.9e-21   75.0   0.4   1   1   2.1e-24     8e-21   74.6   0.4     4   118   142   253   139   254 0.95 Siderophore-interacting protein
FAD_binding_6        PF00970.19    99 sp|Q46871|YQJH_ECOLI -            254     0.016   15.3   0.0   1   1     8e-06      0.03   14.4   0.0    48    97    85   133    80   135 0.85 Oxidoreductase FAD-binding domain
GST_N_2              PF13409.1     70 sp|P42620|YQJG_ECOLI -            328   9.7e-24   83.1   0.0   1   1   7.4e-27   2.2e-23   82.0   0.0     1    70    62   159    62   159 0.86 Glutathione S-transferase, N-terminal domain
GST_C_2              PF13410.1     69 sp|P42620|YQJG_ECOLI -            328   4.4e-14   52.1   0.0   1   1     3e-17   8.9e-14   51.1   0.0     1    54   203   256   203   279 0.89 Glutathione S-transferase, C-terminal domain
GST_C                PF00043.20    95 sp|P42620|YQJG_ECOLI -            328   8.9e-07   28.8   0.0   1   1   4.9e-10   1.5e-06   28.1   0.0    20    67   200   247   167   281 0.76 Glutathione S-transferase, C-terminal domain
GST_N_3              PF13417.1     75 sp|P42620|YQJG_ECOLI -            328   1.5e-05   25.0   0.0   1   1   1.5e-07   0.00046   20.3   0.0     1    72    57   161    57   173 0.72 Glutathione S-transferase, N-terminal domain
GST_C_3              PF14497.1     99 sp|P42620|YQJG_ECOLI -            328   4.5e-05   23.8   0.0   1   1   4.3e-08   0.00013   22.3   0.0    19    84   192   258   149   294 0.79 Glutathione S-transferase, C-terminal domain
PapD_N               PF00345.15   122 sp|P42914|YRAI_ECOLI -            231     1e-41  141.5   0.0   1   1   2.4e-45   1.8e-41  140.7   0.0     1   122    25   145    25   145 0.94 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PapD_C               PF02753.12    68 sp|P42914|YRAI_ECOLI -            231   3.3e-17   62.0   0.2   2   2     1e-20   7.7e-17   60.8   0.1     1    67   164   226   164   227 0.91 Pili assembly chaperone PapD, C-terminal domain
Fimbrial             PF00419.15   145 sp|P43319|YRAK_ECOLI -            363   6.5e-21   75.0   0.5   2   2   4.4e-25   6.5e-21   75.0   0.5     2   143   211   361   210   363 0.85 Fimbrial protein
Fimbrial             PF00419.15   145 sp|P42913|YRAH_ECOLI -            194   4.6e-13   49.5   0.0   1   1   4.3e-17   6.3e-13   49.1   0.0     3   144    29   193    27   194 0.76 Fimbrial protein
Usher                PF00577.15   552 sp|P42915|YRAJ_ECOLI -            838  1.4e-207  690.8  29.9   2   2  3.7e-211  1.4e-207  690.8  29.9     1   552   206   748   206   748 0.99 Outer membrane usher protein
PapC_N               PF13954.1    146 sp|P42915|YRAJ_ECOLI -            838   1.7e-47  160.6   0.1   1   1   9.8e-51   3.6e-47  159.5   0.1     1   146    43   192    43   192 0.98 PapC N-terminal domain
PapC_C               PF13953.1     68 sp|P42915|YRAJ_ECOLI -            838   5.4e-21   73.9   0.1   1   1   3.3e-24   1.2e-20   72.8   0.1     2    67   759   825   758   826 0.95 PapC C-terminal domain
DUF1968              PF09291.5     85 sp|P42915|YRAJ_ECOLI -            838    0.0057   16.4   0.2   1   1   5.6e-06     0.021   14.6   0.0    40    82   787   831   775   834 0.83 Domain of unknown function (DUF1968)
UPF0102              PF02021.12    93 sp|P45465|YRAN_ECOLI -            131   4.9e-36  122.5   0.1   1   1   1.2e-39   5.9e-36  122.2   0.1     1    92    22   115    22   116 0.98 Uncharacterised protein family UPF0102
Vsr                  PF03852.10    75 sp|P45465|YRAN_ECOLI -            131     0.011   15.3   0.0   1   1   3.7e-06     0.018   14.6   0.0    16    63    16    64     2    70 0.79 DNA mismatch endonuclease Vsr
DUF1391              PF07151.7     49 sp|P45465|YRAN_ECOLI -            131     0.018   14.4   1.6   2   2   0.00015      0.74    9.3   0.1    25    48    77   100    75   101 0.89 Protein of unknown function (DUF1391)
DUF318               PF03773.8    307 sp|P45468|YRAQ_ECOLI -            346   2.7e-82  276.2  24.6   1   1   4.7e-86   3.5e-82  275.8  24.6     2   305    62   343    61   345 0.98 Predicted permease
Hexapep              PF00132.19    36 sp|P0A9W9|YRDA_ECOLI -            184     8e-20   69.4   6.7   1   4   1.6e-09   1.2e-05   24.5   0.0     2    36    13    47    12    47 0.96 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0A9W9|YRDA_ECOLI -            184     8e-20   69.4   6.7   3   4   2.4e-10   1.7e-06   27.2   1.0     3    33    82   111    80   112 0.94 Bacterial transferase hexapeptide (six repeats)
Hexapep              PF00132.19    36 sp|P0A9W9|YRDA_ECOLI -            184     8e-20   69.4   6.7   4   4   1.8e-11   1.3e-07   30.7   0.8     1    34    97   130    97   132 0.95 Bacterial transferase hexapeptide (six repeats)
Hexapep_2            PF14602.1     34 sp|P0A9W9|YRDA_ECOLI -            184     1e-06   28.2   7.5   3   4   3.6e-07    0.0027   17.2   0.6     1    32    80   112    80   114 0.94 Hexapeptide repeat of succinyl-transferase
Na_Ca_ex             PF01699.19   140 sp|P45394|YRBG_ECOLI -            325     1e-54  183.9  23.8   1   2   2.6e-32   1.3e-28   99.3   9.2     1   139    13   142    13   143 0.98 Sodium/calcium exchanger protein
Na_Ca_ex             PF01699.19   140 sp|P45394|YRBG_ECOLI -            325     1e-54  183.9  23.8   2   2   1.2e-29   6.1e-26   90.6   6.6     4   139   187   315   183   316 0.95 Sodium/calcium exchanger protein
V_ATPase_I           PF01496.14   759 sp|P45394|YRBG_ECOLI -            325     0.076   10.8   0.4   1   1   1.7e-05     0.084   10.7   0.4   508   616    54   153    25   262 0.79 V-type ATPase 116kDa subunit family
SIT                  PF15330.1    107 sp|P45394|YRBG_ECOLI -            325      0.84    9.8   4.3   2   2    0.0002      0.98    9.5   0.0     8    31   277   300   276   308 0.85 SHP2-interacting transmembrane adaptor protein, SIT
HAD_2                PF13419.1    176 sp|P64636|YRFG_ECOLI -            222   4.9e-23   82.2   0.1   1   1   1.7e-26   6.2e-23   81.9   0.1     1   174    13   190    13   191 0.87 Haloacid dehalogenase-like hydrolase
Hydrolase            PF00702.21   215 sp|P64636|YRFG_ECOLI -            222   1.3e-06   28.9   1.6   1   1   2.8e-08    0.0001   22.7   1.6     2   215    11   186    10   186 0.67 haloacid dehalogenase-like hydrolase
Hydrolase_6          PF13344.1    101 sp|P64636|YRFG_ECOLI -            222   0.00068   19.4   0.0   2   2   6.6e-06     0.024   14.4   0.0    20    68    99   144    91   154 0.88 Haloacid dehalogenase-like hydrolase
HAD                  PF12710.2    192 sp|P64636|YRFG_ECOLI -            222      0.11   12.7   0.1   1   1   4.3e-05      0.16   12.1   0.1     1   129    13   133    13   183 0.61 haloacid dehalogenase-like hydrolase
DUF1656              PF07869.7     58 sp|A5A630|YTCA_ECOLI -             91   0.00023   20.8   5.4   1   1   5.6e-08   0.00084   19.0   5.4     5    54    35    85    31    90 0.75 Protein of unknown function (DUF1656)
Hemerythrin          PF01814.18   133 sp|P69506|YTFE_ECOLI -            220   7.3e-29  100.6   0.2   1   1   1.7e-32   1.2e-28   99.8   0.2     2   133    76   216    75   216 0.98 Hemerythrin HHE cation binding domain
ScdA_N               PF04405.9     56 sp|P69506|YTFE_ECOLI -            220   1.7e-20   72.1   0.0   1   1   3.8e-24   2.8e-20   71.4   0.0     2    55     5    58     4    59 0.97 Domain of Unknown function (DUF542)
DUF21                PF01595.15   183 sp|P0AE45|YTFL_ECOLI -            447   3.1e-44  150.4   3.6   1   1   9.8e-48   4.8e-44  149.8   3.6     3   183     5   197     3   197 0.98 Domain of unknown function DUF21
CorC_HlyC            PF03471.12    81 sp|P0AE45|YTFL_ECOLI -            447   4.4e-23   80.8   0.1   1   1   1.9e-26   9.5e-23   79.7   0.1     2    80   347   425   346   426 0.94 Transporter associated domain
CBS                  PF00571.23    57 sp|P0AE45|YTFL_ECOLI -            447   3.2e-10   39.6   1.2   1   2     3e-06     0.015   15.0   0.0    17    56   230   270   214   271 0.80 CBS domain
CBS                  PF00571.23    57 sp|P0AE45|YTFL_ECOLI -            447   3.2e-10   39.6   1.2   2   2     2e-08   9.9e-05   22.0   0.1     9    55   286   332   280   334 0.92 CBS domain
AIG2                 PF06094.7    102 sp|P0AE48|YTFP_ECOLI -            113   1.2e-18   67.4   0.1   1   1   9.9e-23   1.5e-18   67.1   0.1     1   102     3    94     3    94 0.95 AIG2-like family
ABC_tran             PF00005.22   137 sp|Q6BEX0|YTFR_ECOLI -            500   7.8e-52  175.2   0.0   1   2   4.8e-34   3.4e-31  108.3   0.0     1   137    25   174    25   174 0.96 ABC transporter
ABC_tran             PF00005.22   137 sp|Q6BEX0|YTFR_ECOLI -            500   7.8e-52  175.2   0.0   2   2   1.3e-20   8.9e-18   64.9   0.0     4   136   279   430   276   431 0.89 ABC transporter
AAA_21               PF13304.1    303 sp|Q6BEX0|YTFR_ECOLI -            500   1.3e-14   54.9   1.4   1   3   5.5e-07   0.00039   20.4   0.1     1    24    37    60    37   106 0.86 AAA domain
AAA_21               PF13304.1    303 sp|Q6BEX0|YTFR_ECOLI -            500   1.3e-14   54.9   1.4   2   3   4.1e-08   2.9e-05   24.1   0.0   225   297   134   203    92   203 0.79 AAA domain
AAA_10               PF12846.2    304 sp|Q6BEX0|YTFR_ECOLI -            500   1.3e-08   34.6   0.6   1   3   0.00037      0.26   10.6   0.0     4    28    38    63    35    69 0.75 AAA-like domain
AAA_10               PF12846.2    304 sp|Q6BEX0|YTFR_ECOLI -            500   1.3e-08   34.6   0.6   2   3   1.4e-06     0.001   18.6   0.1   206   271   147   213   138   224 0.82 AAA-like domain
SMC_N                PF02463.14   220 sp|Q6BEX0|YTFR_ECOLI -            500   4.5e-06   26.0   0.6   1   3   0.00031      0.22   10.7   0.0    25    45    36    56    21    63 0.84 RecF/RecN/SMC N terminal domain
AAA_15               PF13175.1    415 sp|Q6BEX0|YTFR_ECOLI -            500   1.1e-05   24.6   0.0   1   3   9.3e-06    0.0066   15.5   0.0    11    43    24    62    20   107 0.79 AAA ATPase domain
AAA_29               PF13555.1     62 sp|Q6BEX0|YTFR_ECOLI -            500   1.4e-05   24.5   0.0   1   1   4.8e-08   3.4e-05   23.2   0.0    14    46    27    58    23    66 0.82 P-loop containing region of AAA domain
AAA_22               PF13401.1    131 sp|Q6BEX0|YTFR_ECOLI -            500   3.5e-05   23.9   1.2   1   3   0.00013     0.091   12.9   0.0     3    30    34    61    32   105 0.82 AAA domain
ABC_ATPase           PF09818.4    448 sp|Q6BEX0|YTFR_ECOLI -            500   4.9e-05   22.1   3.5   1   3   0.00091      0.64    8.5   0.1   242   269    32    59    28    64 0.88 Predicted ATPase of the ABC class
UPF0079              PF02367.12   123 sp|Q6BEX0|YTFR_ECOLI -            500   0.00017   21.2   0.1   1   2   0.00011     0.077   12.6   0.0    11    37    31    57    25    67 0.86 Uncharacterised P-loop hydrolase UPF0079
AAA_23               PF13476.1    202 sp|Q6BEX0|YTFR_ECOLI -            500   0.00019   21.8   0.0   1   1   5.5e-07   0.00039   20.8   0.0     8    40    23    56    15    59 0.82 AAA domain
SbcCD_C              PF13558.1     90 sp|Q6BEX0|YTFR_ECOLI -            500   0.00024   20.9   0.2   1   2   0.00086      0.61   10.0   0.1    63    90   163   190   146   190 0.83 Putative exonuclease SbcCD, C subunit
DUF258               PF03193.11   161 sp|Q6BEX0|YTFR_ECOLI -            500    0.0004   19.6   0.0   1   1   9.8e-07   0.00069   18.8   0.0    25    65    24    65     6    86 0.84 Protein of unknown function, DUF258
AAA_16               PF13191.1    185 sp|Q6BEX0|YTFR_ECOLI -            500    0.0046   16.9   0.9   1   1   6.4e-06    0.0046   16.9   0.9    19    64    30    76    23   201 0.55 AAA ATPase domain
MMR_HSR1             PF01926.18   116 sp|Q6BEX0|YTFR_ECOLI -            500    0.0072   16.2   0.0   1   1   3.3e-05     0.023   14.6   0.0     2    21    38    57    37   123 0.88 50S ribosome-binding GTPase
DUF2813              PF11398.3    373 sp|Q6BEX0|YTFR_ECOLI -            500    0.0098   15.0   0.0   1   1   2.5e-05     0.018   14.1   0.0    18    49    31    62    19    83 0.88 Protein of unknown function (DUF2813)
AAA_30               PF13604.1    196 sp|Q6BEX0|YTFR_ECOLI -            500     0.028   13.9   0.4   1   1   0.00021      0.15   11.6   0.1    19    50    36    67    28    88 0.76 AAA domain
AAA_25               PF13481.1    194 sp|Q6BEX0|YTFR_ECOLI -            500     0.036   13.4   0.1   1   1   0.00018      0.12   11.7   0.0    30    56    32    58    10    86 0.78 AAA domain
DUF815               PF05673.8    250 sp|Q6BEX0|YTFR_ECOLI -            500     0.085   11.7   0.0   1   1   0.00025      0.18   10.7   0.0    57    79    39    61    32    69 0.86 Protein of unknown function (DUF815)
Miro                 PF08477.8    119 sp|Q6BEX0|YTFR_ECOLI -            500      0.11   13.0   0.0   1   1   0.00036      0.26   11.8   0.0     3    44    39    90    38   101 0.73 Miro-like protein
Peripla_BP_4         PF13407.1    257 sp|P39325|YTFQ_ECOLI -            318   1.7e-44  152.1   6.6   1   1   6.9e-48   2.1e-44  151.8   6.6     1   242    26   274    26   287 0.92 Periplasmic binding protein domain
Peripla_BP_1         PF00532.16   279 sp|P39325|YTFQ_ECOLI -            318   1.4e-16   60.5   0.1   1   1   5.7e-20   1.7e-16   60.2   0.1    15   223    37   252    25   295 0.85 Periplasmic binding proteins and sugar binding domain of LacI family
ABC_sub_bind         PF04392.7    294 sp|P39325|YTFQ_ECOLI -            318   2.9e-06   26.4   0.1   1   2   3.9e-06     0.012   14.6   0.1   152   221    45   114    33   164 0.78 ABC transporter substrate binding protein
ABC_sub_bind         PF04392.7    294 sp|P39325|YTFQ_ECOLI -            318   2.9e-06   26.4   0.1   2   2   0.00011      0.34    9.8   0.0   119   213   198   290   193   291 0.90 ABC transporter substrate binding protein
Peripla_BP_6         PF13458.1    343 sp|P39325|YTFQ_ECOLI -            318   6.9e-06   25.6   0.4   1   1   4.7e-09   1.4e-05   24.6   0.4    20   264    32   286    19   294 0.73 Periplasmic binding protein
Peripla_BP_3         PF13377.1    160 sp|P39325|YTFQ_ECOLI -            318   0.00079   19.4   0.0   1   1   4.4e-07    0.0013   18.7   0.0    20   105   160   249   151   304 0.75 Periplasmic binding protein-like domain
BPD_transp_2         PF02653.11   267 sp|P39328|YTFT_ECOLI -            341   8.6e-48  162.6  44.5   1   1   7.7e-52   1.1e-47  162.1  44.5     4   267    58   321    55   321 0.92 Branched-chain amino acid transport system / permease component
DUF1328              PF07043.8     39 sp|Q2M5U1|YTJA_ECOLI -             53   1.3e-12   47.5  24.5   1   1     7e-16   1.5e-12   47.2  24.5     1    39     6    44     6    44 0.99 Protein of unknown function (DUF1328)
Pox_A14              PF05767.7     92 sp|Q2M5U1|YTJA_ECOLI -             53      0.17   11.8   5.2   1   1   0.00011      0.24   11.3   5.2    16    63     3    46     1    51 0.78 Poxvirus virion envelope protein A14
ZapA                 PF05164.8     89 sp|P0ADS2|ZAPA_ECOLI -            109   2.3e-20   72.3   0.6   1   1   1.4e-23   2.9e-20   72.0   0.6     2    89     6    91     5    91 0.98 Cell division protein ZapA
Bac_rhamnosid        PF05592.6    509 sp|P0ADS2|ZAPA_ECOLI -            109    0.0045   15.2   0.3   1   1   2.4e-06    0.0052   15.0   0.3   254   331    28   105    16   108 0.86 Bacterial alpha-L-rhamnosidase
DUF3482              PF11981.3    292 sp|P0ADS2|ZAPA_ECOLI -            109    0.0062   15.8   4.7   1   1   3.6e-06    0.0076   15.5   4.7    38   109    22    95    18   102 0.95 Domain of unknown function (DUF3482)
GreA_GreB_N          PF03449.10    74 sp|P0ADS2|ZAPA_ECOLI -            109    0.0091   16.0   4.3   1   1   6.3e-06     0.013   15.5   4.3    10    72    30    93    27    95 0.91 Transcription elongation factor, N-terminal
DUF4561              PF15120.1    171 sp|P0ADS2|ZAPA_ECOLI -            109     0.015   14.8   1.3   1   1   8.9e-06     0.019   14.4   1.3     2    51    32    84    31    99 0.80 Domain of unknown function (DUF4561)
RHH_3                PF12651.2     44 sp|P0ADS2|ZAPA_ECOLI -            109     0.049   13.3   0.1   1   1     5e-05      0.11   12.3   0.1    11    27    32    48    27    51 0.88 Ribbon-helix-helix domain
YtxH                 PF12732.2     74 sp|P0ADS2|ZAPA_ECOLI -            109      0.26   11.7   1.8   1   1   0.00019      0.41   11.0   1.8    28    67    24    82    22   109 0.76 YtxH-like protein
DUF904               PF06005.7     72 sp|P0AF36|ZAPB_ECOLI -             81   3.6e-28   97.6  17.2   1   1   1.7e-30   4.3e-28   97.4  17.2     1    72     3    81     3    81 0.99 Protein of unknown function (DUF904)
PspA_IM30            PF04012.7    221 sp|P0AF36|ZAPB_ECOLI -             81   0.00051   19.4   8.8   1   1   2.3e-06   0.00057   19.3   8.8    14    82    11    79     7    81 0.94 PspA/IM30 family
DUF972               PF06156.8    107 sp|P0AF36|ZAPB_ECOLI -             81   0.00079   19.7   9.6   1   1     4e-06     0.001   19.4   9.6     8    73     6    69     3    80 0.79 Protein of unknown function (DUF972)
AAA_27               PF13514.1   1111 sp|P0AF36|ZAPB_ECOLI -             81    0.0011   16.8   6.7   1   1   5.3e-06    0.0013   16.5   6.7   653   717    14    78     3    79 0.84 AAA domain
CCDC155              PF14662.1    193 sp|P0AF36|ZAPB_ECOLI -             81    0.0014   18.2  13.8   1   1   6.3e-06    0.0016   18.0  13.8    54   120    14    80     4    81 0.91 Coiled-coil region of CCDC155
Filament             PF00038.16   312 sp|P0AF36|ZAPB_ECOLI -             81    0.0015   18.0  10.3   1   1   6.6e-06    0.0017   17.9  10.3   197   269     8    80     5    81 0.96 Intermediate filament protein
Seryl_tRNA_N         PF02403.17   108 sp|P0AF36|ZAPB_ECOLI -             81    0.0017   18.3  10.3   1   1     9e-06    0.0023   17.9  10.3    30    99    14    80     4    81 0.85 Seryl-tRNA synthetase N-terminal domain
DUF3450              PF11932.3    252 sp|P0AF36|ZAPB_ECOLI -             81    0.0025   17.1   9.8   1   1     1e-05    0.0025   17.1   9.8    24    96     8    80     1    81 0.83 Protein of unknown function (DUF3450)
ADIP                 PF11559.3    151 sp|P0AF36|ZAPB_ECOLI -             81    0.0026   17.6  11.6   1   1   1.3e-05    0.0031   17.4  11.6    52   118     6    72     3    80 0.91 Afadin- and alpha -actinin-Binding
CENP-F_leu_zip       PF10473.4    140 sp|P0AF36|ZAPB_ECOLI -             81    0.0029   17.4  10.0   1   1   1.3e-05    0.0034   17.2  10.0    51   108     5    62     1    79 0.85 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
CtIP_N               PF10482.4    120 sp|P0AF36|ZAPB_ECOLI -             81    0.0034   17.1  11.8   1   2   0.00021     0.054   13.2   2.2    86   120    10    44     6    44 0.94 Tumour-suppressor protein CtIP N-terminal domain
CtIP_N               PF10482.4    120 sp|P0AF36|ZAPB_ECOLI -             81    0.0034   17.1  11.8   2   2    0.0029      0.73    9.6   3.0    33    65    45    78    42    80 0.82 Tumour-suppressor protein CtIP N-terminal domain
Herpes_UL6           PF01763.11   557 sp|P0AF36|ZAPB_ECOLI -             81    0.0062   14.7   5.8   1   1   2.6e-05    0.0065   14.7   5.8   361   416     4    59     1    80 0.75 Herpesvirus UL6 like
Not3                 PF04065.10   233 sp|P0AF36|ZAPB_ECOLI -             81    0.0085   15.3   8.7   1   1   3.9e-05    0.0097   15.1   8.7   106   185     4    81     2    81 0.86 Not1 N-terminal domain, CCR4-Not complex component
IncA                 PF04156.9    191 sp|P0AF36|ZAPB_ECOLI -             81    0.0086   15.6  11.9   1   1   3.6e-05    0.0091   15.6  11.9    82   149     7    74     2    81 0.54 IncA protein
TMF_TATA_bd          PF12325.3    121 sp|P0AF36|ZAPB_ECOLI -             81    0.0096   15.6  13.2   1   1   4.1e-05      0.01   15.5  13.2    13    93     2    79     1    81 0.85 TATA element modulatory factor 1 TATA binding
Tropomyosin_1        PF12718.2    143 sp|P0AF36|ZAPB_ECOLI -             81     0.014   15.2  13.7   1   1   9.8e-05     0.025   14.4  13.7    70   140    10    80     2    81 0.79 Tropomyosin like
DUF948               PF06103.6     90 sp|P0AF36|ZAPB_ECOLI -             81      0.02   14.7   3.2   1   1   0.00019     0.047   13.5   3.2    20    79    21    80     2    81 0.84 Bacterial protein of unknown function (DUF948)
BLOC1_2              PF10046.4     99 sp|P0AF36|ZAPB_ECOLI -             81     0.021   14.9   8.3   1   1   0.00017     0.042   13.9   8.3     6    68    13    74     6    80 0.86 Biogenesis of lysosome-related organelles complex-1 subunit 2
DUF1664              PF07889.7    126 sp|P0AF36|ZAPB_ECOLI -             81     0.024   14.4   3.6   1   1   0.00012     0.029   14.1   3.6    71   126     9    64     2    77 0.56 Protein of unknown function (DUF1664)
Lzipper-MIP1         PF14389.1     88 sp|P0AF36|ZAPB_ECOLI -             81     0.027   14.5   3.9   1   2   0.00011     0.027   14.5   3.9    47    87     6    46     1    47 0.88 Leucine-zipper of ternary complex factor MIP1
DUF4164              PF13747.1     89 sp|P0AF36|ZAPB_ECOLI -             81     0.036   14.1   7.2   1   1   0.00022     0.054   13.6   7.2    17    89     8    77     4    77 0.86 Domain of unknown function (DUF4164)
TBPIP                PF07106.8    169 sp|P0AF36|ZAPB_ECOLI -             81      0.04   13.4   8.2   1   1   0.00019     0.048   13.2   8.2    74   128    22    74     3    81 0.63 Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
Sipho_Gp157          PF05565.6    162 sp|P0AF36|ZAPB_ECOLI -             81     0.042   13.4   5.4   1   2   0.00028     0.071   12.6   4.4    34    80     7    53     2    61 0.89 Siphovirus Gp157
DUF4140              PF13600.1    104 sp|P0AF36|ZAPB_ECOLI -             81     0.051   14.0   7.5   1   1   0.00041       0.1   13.0   7.5    48   103    22    74     3    75 0.74 N-terminal domain of unknown function (DUF4140)
ERM                  PF00769.14   246 sp|P0AF36|ZAPB_ECOLI -             81     0.057   12.9  12.0   1   1   0.00024      0.06   12.8  12.0     9    67    10    68     5    81 0.67 Ezrin/radixin/moesin family
Ax_dynein_light      PF10211.4    189 sp|P0AF36|ZAPB_ECOLI -             81     0.057   13.2   8.4   1   1    0.0003     0.075   12.8   8.4   120   173    20    72     7    80 0.74 Axonemal dynein light chain
CALCOCO1             PF07888.6    546 sp|P0AF36|ZAPB_ECOLI -             81     0.062   11.5   8.2   1   1   0.00027     0.069   11.4   8.2   158   225     7    74     3    80 0.94 Calcium binding and coiled-coil domain (CALCOCO1) like
LPP                  PF04728.8     56 sp|P0AF36|ZAPB_ECOLI -             81     0.068   12.9   0.3   1   1   0.00038     0.096   12.4   0.3     3    50    13    63    11    68 0.82 Lipoprotein leucine-zipper
DUF2730              PF10805.3    106 sp|P0AF36|ZAPB_ECOLI -             81     0.072   12.8   3.7   1   1   0.00036     0.089   12.5   3.2    55    96    12    51     6    63 0.82 Protein of unknown function (DUF2730)
DUF4200              PF13863.1    126 sp|P0AF36|ZAPB_ECOLI -             81     0.073   13.0  11.6   1   1   0.00034     0.086   12.7  11.6    35   106     9    80     1    81 0.92 Domain of unknown function (DUF4200)
APG6                 PF04111.7    315 sp|P0AF36|ZAPB_ECOLI -             81     0.077   12.0  12.4   1   1   0.00035     0.089   11.8  12.4    52   118     8    74     2    80 0.58 Autophagy protein Apg6
Atg14                PF10186.4    302 sp|P0AF36|ZAPB_ECOLI -             81     0.077   11.9   7.6   1   1   0.00033     0.083   11.8   7.6    57   126    14    65     2    80 0.37 UV radiation resistance protein and autophagy-related subunit 14
DUF4337              PF14235.1    157 sp|P0AF36|ZAPB_ECOLI -             81       0.1   12.4   4.1   1   1   0.00046      0.12   12.2   4.1    68   114    22    68     3    75 0.69 Domain of unknown function (DUF4337)
SBP_bac_7            PF03480.8    286 sp|P0AF36|ZAPB_ECOLI -             81      0.11   11.5   5.3   1   1    0.0005      0.13   11.3   5.3   209   267     1    57     1    80 0.77 Bacterial extracellular solute-binding protein, family 7
V_ATPase_I           PF01496.14   759 sp|P0AF36|ZAPB_ECOLI -             81      0.12   10.2   7.7   1   1   0.00051      0.13   10.1   7.7    68   123    14    69     2    80 0.63 V-type ATPase 116kDa subunit family
DivIVA               PF05103.8    131 sp|P0AF36|ZAPB_ECOLI -             81      0.13   12.3  11.1   1   2    0.0014      0.35   10.9  10.7    34    88     8    62     5    70 0.75 DivIVA protein
Cep57_CLD_2          PF14197.1     69 sp|P0AF36|ZAPB_ECOLI -             81      0.14   12.1  12.3   1   1   0.00023     0.058   13.3   9.8     3    37    25    59    23    65 0.91 Centrosome localisation domain of PPC89
Shugoshin_N          PF07558.6     46 sp|P0AF36|ZAPB_ECOLI -             81      0.19   11.4   7.5   1   1    0.0013      0.32   10.7   7.5    10    43    30    63    22    65 0.95 Shugoshin N-terminal coiled-coil region
TMF_DNA_bd           PF12329.3     74 sp|P0AF36|ZAPB_ECOLI -             81       0.2   11.4  15.3   1   1    0.0011      0.27   11.0  15.3     4    66    12    74     6    81 0.78 TATA element modulatory factor 1 DNA binding
CHD5                 PF04420.9    161 sp|P0AF36|ZAPB_ECOLI -             81       0.2   11.3   3.2   1   1   0.00091      0.23   11.1   3.2    15    91    13    73     2    81 0.63 CHD5-like protein
Sec34                PF04136.10   157 sp|P0AF36|ZAPB_ECOLI -             81       0.2   11.3   5.7   1   1   0.00087      0.22   11.2   5.7     9    73     8    72     2    81 0.91 Sec34-like family
CP12                 PF02672.10    71 sp|P0AF36|ZAPB_ECOLI -             81      0.23   11.9   5.8   1   1    0.0018      0.46   10.9   5.9     8    48    25    65     9    75 0.86 CP12 domain
DUF3373              PF11853.3    489 sp|P0AF36|ZAPB_ECOLI -             81      0.23    9.9   4.3   1   1    0.0011      0.27    9.7   4.3    19    63    14    59     2    76 0.81 Protein of unknown function (DUF3373)
Mnd1                 PF03962.10   188 sp|P0AF36|ZAPB_ECOLI -             81      0.24   11.0   9.8   1   1    0.0012      0.29   10.7   9.8    72   130     9    68     4    80 0.43 Mnd1 family
Tox-ODYAM1           PF15642.1    385 sp|P0AF36|ZAPB_ECOLI -             81      0.27    9.8   6.6   1   1     0.001      0.26    9.9   6.6   120   182    17    78     2    81 0.79 Toxin in Odyssella and Amoebophilus
NUDE_C               PF04880.8    166 sp|P0AF36|ZAPB_ECOLI -             81      0.28   11.5   9.2   1   1    0.0013      0.31   11.3   9.2     2    54     8    65     4    75 0.76 NUDE protein, C-terminal conserved region
DivIC                PF04977.10    80 sp|P0AF36|ZAPB_ECOLI -             81      0.31   10.5  13.4   1   2   0.00074      0.19   11.2   7.7    24    58    20    54     5    55 0.83 Septum formation initiator
HemX                 PF04375.9    372 sp|P0AF36|ZAPB_ECOLI -             81      0.35    9.4   8.6   1   1    0.0015      0.37    9.3   8.6    52   104    26    77     9    81 0.89 HemX
DUF2968              PF11180.3    192 sp|P0AF36|ZAPB_ECOLI -             81      0.43    9.9  11.2   1   1    0.0019      0.48    9.7  11.2   116   181    10    75     6    81 0.83 Protein of unknown function (DUF2968)
bZIP_2               PF07716.10    54 sp|P0AF36|ZAPB_ECOLI -             81      0.77    9.6  18.1   1   2   0.00095      0.24   11.2   4.0    30    52    25    47    20    49 0.90 Basic region leucine zipper
DUF1379              PF07126.7    154 sp|P75862|ZAPC_ECOLI -            180   1.9e-56  189.7   0.0   1   1   1.7e-60   2.5e-56  189.3   0.0     1   149    21   170    21   175 0.98 Protein of unknown function (DUF1379)
DUF1342              PF07072.6    211 sp|P36680|ZAPD_ECOLI -            247   6.9e-76  254.5   0.3   1   1   5.3e-80   7.9e-76  254.3   0.3     1   211    19   225    19   225 0.99 Protein of unknown function (DUF1342)
AFG1_ATPase          PF03969.11   362 sp|P64612|ZAPE_ECOLI -            375  2.9e-166  552.7   0.1   1   1  2.2e-170  3.3e-166  552.5   0.1     2   362     5   371     4   371 0.99 AFG1-like ATPase
YodA                 PF09223.6    182 sp|P76344|ZINT_ECOLI -            216   1.8e-86  288.4   5.1   1   1   1.4e-90   2.1e-86  288.2   5.1     2   182    36   216    35   216 0.99 YodA lipocalin-like domain
ZipA_C               PF04354.8    131 sp|P77173|ZIPA_ECOLI -            328     2e-50  169.6   0.1   1   1   3.6e-54   2.6e-50  169.2   0.1     2   129   192   318   191   320 0.98 ZipA, C-terminal FtsZ-binding domain
Cation_efflux        PF01545.16   285 sp|P75757|ZITB_ECOLI -            313   2.6e-78  262.9   6.2   1   1     4e-82     3e-78  262.8   6.2     1   283    21   294    21   296 0.97 Cation efflux family
CorA                 PF01544.13   292 sp|P64423|ZNTB_ECOLI -            327   5.6e-63  212.6   0.0   1   1   4.4e-67   6.5e-63  212.4   0.0     3   292    39   323    37   323 0.97 CorA-like Mg2+ transporter protein
ABC-3                PF00950.12   258 sp|P39832|ZNUB_ECOLI -            261   1.1e-87  293.6  26.1   1   1   3.3e-91   1.2e-87  293.4  26.1     2   257     2   257     1   258 0.99 ABC 3 transport family
FecCD                PF01032.13   311 sp|P39832|ZNUB_ECOLI -            261   6.5e-07   28.4  27.3   1   1   1.8e-10   6.5e-07   28.4  27.3   103   309    56   255    29   257 0.76 FecCD transport family
TauE                 PF01925.14   240 sp|P39832|ZNUB_ECOLI -            261      0.25   10.7  32.4   2   2   0.00014      0.52    9.7  16.6    81   205   117   249   109   256 0.57 Sulfite exporter TauE/SafE
Gram_pos_anchor      PF00746.16    39 sp|P39832|ZNUB_ECOLI -            261      0.91    9.4   0.0   2   3   0.00025      0.91    9.4   0.0    17    39    55    77    53    77 0.90 Gram positive anchor
TroA                 PF01297.12   256 sp|P39172|ZNUA_ECOLI -            310   3.3e-61  206.7   0.0   1   1   2.5e-65   3.7e-61  206.6   0.0     1   256    28   307    28   307 0.91 Periplasmic solute binding protein family
ABC_tran             PF00005.22   137 sp|P0A9X1|ZNUC_ECOLI -            251   1.4e-28   99.8   0.0   1   1     3e-31   2.5e-28   99.0   0.0     1   137    20   149    20   149 0.93 ABC transporter
AAA_21               PF13304.1    303 sp|P0A9X1|ZNUC_ECOLI -            251   2.9e-10   40.5   0.0   1   2   3.2e-06    0.0027   17.7   0.0     4    77    35    84    32   108 0.69 AAA domain
AAA_21               PF13304.1    303 sp|P0A9X1|ZNUC_ECOLI -            251   2.9e-10   40.5   0.0   2   2   3.1e-07   0.00026   21.0   0.0   228   302   112   184    90   186 0.88 AAA domain
AAA_29               PF13555.1     62 sp|P0A9X1|ZNUC_ECOLI -            251   0.00013   21.4   0.1   1   1   3.2e-07   0.00027   20.4   0.1    17    51    25    58    19    65 0.80 P-loop containing region of AAA domain
AAA_25               PF13481.1    194 sp|P0A9X1|ZNUC_ECOLI -            251   0.00099   18.5   0.3   1   1   6.9e-06    0.0057   16.0   0.3    30   188    27   179     3   180 0.67 AAA domain
DUF258               PF03193.11   161 sp|P0A9X1|ZNUC_ECOLI -            251    0.0015   17.7   0.1   1   1   3.2e-06    0.0026   16.9   0.1    15    57     9    52     3    73 0.83 Protein of unknown function, DUF258
AAA_22               PF13401.1    131 sp|P0A9X1|ZNUC_ECOLI -            251    0.0036   17.4   0.8   1   1   7.9e-05     0.065   13.3   0.8     5   121    31   185    27   192 0.55 AAA domain
SMC_N                PF02463.14   220 sp|P0A9X1|ZNUC_ECOLI -            251    0.0062   15.7   0.0   1   2   0.00081      0.67    9.1   0.0    26    43    32    49    13    58 0.80 RecF/RecN/SMC N terminal domain
AAA_16               PF13191.1    185 sp|P0A9X1|ZNUC_ECOLI -            251    0.0064   16.4   1.5   1   1     3e-05     0.024   14.6   1.5    23   177    29   166    17   177 0.59 AAA ATPase domain
SbcCD_C              PF13558.1     90 sp|P0A9X1|ZNUC_ECOLI -            251    0.0074   16.1   0.0   1   1   0.00018      0.15   12.0   0.0    27    89   115   164   106   165 0.73 Putative exonuclease SbcCD, C subunit
MutS_V               PF00488.16   235 sp|P0A9X1|ZNUC_ECOLI -            251     0.008   15.6   0.0   1   2   0.00026      0.22   10.9   0.0    31    63    18    50     8    55 0.83 MutS domain V
AAA_23               PF13476.1    202 sp|P0A9X1|ZNUC_ECOLI -            251     0.009   16.3   0.0   1   1   1.4e-05     0.011   16.0   0.0    11    38    21    49     6    93 0.81 AAA domain
UPF0079              PF02367.12   123 sp|P0A9X1|ZNUC_ECOLI -            251    0.0098   15.5   0.1   1   1   2.1e-05     0.017   14.7   0.1     8    35    23    50    17    61 0.86 Uncharacterised P-loop hydrolase UPF0079
AAA_19               PF13245.1     76 sp|P0A9X1|ZNUC_ECOLI -            251     0.047   13.4   0.2   1   1   0.00013      0.11   12.2   0.2     8    37    28    56    22    73 0.82 Part of AAA domain
Rad17                PF03215.10   519 sp|P0A9X1|ZNUC_ECOLI -            251     0.058   12.0   0.1   1   1    0.0001     0.084   11.5   0.1    35    65    20    50    16    56 0.88 Rad17 cell cycle checkpoint protein
Arch_ATPase          PF01637.13   234 sp|P0A9X1|ZNUC_ECOLI -            251      0.14   11.8   0.0   1   1   0.00019      0.15   11.6   0.0    15    43    25    53    22   166 0.91 Archaeal ATPase
AAA_PrkA             PF08298.6    358 sp|P0A9X1|ZNUC_ECOLI -            251      0.15   10.7   0.1   1   1   0.00027      0.22   10.1   0.1    89   107    31    49    21    56 0.86 PrkA AAA domain
Metal_resist         PF13801.1    125 sp|P0AAA9|ZRAP_ECOLI -            141   3.1e-19   69.1   2.9   1   1     1e-22   3.1e-19   69.1   2.9     8   122    10   120     5   123 0.84 Heavy-metal resistance
DUF3584              PF12128.3   1201 sp|P0AAA9|ZRAP_ECOLI -            141    0.0024   15.3   0.2   1   1   9.5e-07    0.0028   15.0   0.2   722   795    36   109    28   113 0.91 Protein of unknown function (DUF3584)
LTXXQ                PF07813.7    100 sp|P0AAA9|ZRAP_ECOLI -            141     0.028   14.8   2.6   1   1   1.7e-05     0.049   14.0   2.6    15    78    40   106    27   115 0.72 LTXXQ motif family protein
MRP-L47              PF06984.8     87 sp|P0AAA9|ZRAP_ECOLI -            141      0.04   13.8   0.1   1   1     2e-05     0.058   13.3   0.1    27    86    42   103    29   104 0.79 Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
IncA                 PF04156.9    191 sp|P0AAA9|ZRAP_ECOLI -            141     0.091   12.3   0.0   1   1   3.9e-05      0.12   11.9   0.0    75   143    35   105     6   110 0.78 IncA protein
Zip                  PF02535.17   317 sp|P0A8H3|ZUPT_ECOLI -            257   1.1e-31  110.0  21.5   1   2   1.7e-08   8.6e-05   21.6   8.3   233   309     5    74     1    82 0.83 ZIP Zinc transporter
Zip                  PF02535.17   317 sp|P0A8H3|ZUPT_ECOLI -            257   1.1e-31  110.0  21.5   2   2   1.1e-30   5.4e-27   94.6   5.2   148   315    86   246    80   248 0.96 ZIP Zinc transporter
E1-E2_ATPase         PF00122.15   230 sp|P0A8H3|ZUPT_ECOLI -            257    0.0049   15.9   0.1   1   2   9.9e-07    0.0049   15.9   0.1   175   216    95   170    12   172 0.67 E1-E2 ATPase
DUF2108              PF09881.4     72 sp|P0A8H3|ZUPT_ECOLI -            257       2.7    7.8  13.6   1   2   1.6e-05     0.079   12.7   3.5     3    61     6    65     5    75 0.89 Predicted membrane protein (DUF2108)
FUR                  PF01475.14   120 sp|P0AC51|ZUR_ECOLI  -            171   2.7e-15   56.3   0.1   1   1   2.9e-18   6.2e-15   55.1   0.0     2   118    20   138    19   140 0.90 Ferric uptake regulator family
MarR                 PF01047.17    59 sp|P0AC51|ZUR_ECOLI  -            171     0.036   13.7   0.0   1   1   6.7e-05      0.14   11.8   0.0    29    54    58    83    24    84 0.79 MarR family
HTH_5                PF01022.15    47 sp|P0AC51|ZUR_ECOLI  -            171     0.037   13.7   0.0   1   1   0.00019       0.4   10.3   0.0     2    47    26    78    25    78 0.78 Bacterial regulatory protein, arsR family
PadR                 PF03551.9     75 sp|P0AC51|ZUR_ECOLI  -            171     0.057   13.2   0.0   1   1   6.2e-05      0.13   12.0   0.0     3    52    35    81    31    85 0.81 Transcriptional regulator PadR-like family
TrmB                 PF01978.14    68 sp|P0AC51|ZUR_ECOLI  -            171     0.095   12.4   0.0   1   1   8.7e-05      0.18   11.4   0.0    37    58    61    82    53    92 0.87 Sugar-specific transcriptional regulator TrmB
Penicillinase_R      PF03965.11   115 sp|P0AC51|ZUR_ECOLI  -            171       0.1   12.6   0.0   1   1   6.9e-05      0.15   12.1   0.0     1    67    24    92    24   128 0.87 Penicillinase repressor
DUF4423              PF14394.1    171 sp|P0AC51|ZUR_ECOLI  -            171      0.12   11.9   0.0   1   1   9.2e-05       0.2   11.2   0.0    30    79    32    85    26    90 0.81 Domain of unknown function (DUF4423)
