Genome name | No. proteins | Description | Date added |
[Land plants] |
Arabidopsis lyrata | 32669 | JGI 1.0 4/7/08 | 2012-06-06 |
Arabidopsis thaliana | 35251 | TAIR10 12/15/10 (via PlantGDB) | 2012-06-06 |
Arabidopsis thaliana 06 | 28936 | TIGR rel 5.0 06/10/2004 ATH1.pep; data used in Genome Biology but w/ updated PLS_ACC model and no 30aa or shorter | 2008-03-01 |
Arabidopsis thaliana 07 | 31905 | TAIR7 rel. 04/23/2007 (>30aa) | 2008-02-29 |
Arabidopsis thaliana 08 | 32690 | TAIR TAIR8 4/12/08 | 2009-04-08 |
Brachypodium distachyon | 30992 | Phytozome v8.0 1/16/12 | 2012-06-06 |
Cucumis sativus | 30296 | Phytozome v8.0 1/16/12 | 2012-06-06 |
Glycine max | 55784 | Phytozome v8.0 1/16/12 | 2012-06-06 |
Manihot esculenta | 45901 | Phytozome v8.0 5/1/12 | 2012-06-06 |
Mimulus guttatus | 28281 | PlantGDB 140 1/20/10 | 2012-06-06 |
Oryza sativa | 66317 | Phytozome v8.0 5/1/12 | 2012-06-06 |
Populus trichocarpa | 45022 | PlantGDB 156 2/14/12 | 2012-06-06 |
Sorghum bicolor | 29448 | PlantGDB 79 3/28/11 | 2012-06-06 |
Vitis vinifera | 25781 | PlantGDB Genoscope v2 3/19/10 | 2012-06-06 |
Zea mays | 63103 | Phytozome v8.0 1/16/12 | 2012-06-06 |
[Mosses & Ferns] |
Physcomitrella patens | 38060 | Photozome v8.0 1/16/12 | 2012-06-06 |
Selaginella moellendorffii | 22285 | JGI 1.0 12/20/07 | 2012-06-06 |
[Green algae] |
Bigelowiella natans | 21708 | JGI 1.0 5/19/10 | 2012-06-06 |
Chlamydomonas reinhardtii | 16688 | JGI 4.0 3/4/09 (21 removed; < 35aa) | 2012-06-13 |
Chlorella NC64A | 9791 | JGI1.0 6/13/08 | 2012-06-13 |
Coccomyxa C169 | 9629 | JGI 2.0 9/25/09 | 2012-06-06 |
Guillardia theta | 24840 | JGI 1.0 10/1/10 | 2012-06-06 |
Micromonas pusilla | 10672 | JGI 3.0 2/15/08 | 2012-06-06 |
Micromonas RCC299 | 10107 | JGI 3.0 4/1/09 | 2012-06-06 |
Ostreococcus lucimarinus | 7651 | JGI 2.0 10/26/07 | 2012-06-06 |
Ostreococcus RCC809 | 7490 | JGI 2.0 10/26/07 | 2012-06-06 |
Ostreococcus tauri | 7725 | JGI 2.0 10/26/07 | 2012-06-06 |
Volvox carteri | 15285 | Phytozome v8.0 1/16/12 | 2012-06-06 |
[Rhodophytes] |
Cyanidioschyzon merolae | 5004 | U Tokyo 1/18/08 | 2012-06-06 |
[Fungi] |
Ashbya gossypii (or Eremothecium gossypii) | 4719 | NCBI NC_005782-NC_005789 6/11/08 | 2009-04-13 |
Aspergillus nidulans | 10554 | FGI 4.0 rel. 03/07/2006 | 2009-04-08 |
Aspergillus niger | 11197 | JGI 3.0 06/30/08 | 2009-04-08 |
Candida glabrata | 5192 | NCBI rel. 07/24/2007 | 2009-04-08 |
Debaryomyces hansenii | 6299 | NCBI rel. 07/24/2007 | 2009-04-08 |
Encephalitozoon cuniculi | 1996 | NCBI NC_003229-NC_003242 6/11/08 | 2009-04-08 |
Fusarium graminearum | 13297 | FGI 3.0 rel. 03/10/2007 | 2009-04-08 |
Kluyveromyces lactis | 5327 | NCBI rel. 07/24/2007 | 2009-04-08 |
Magnaporthe grisea 70-15 | 11053 | FGI 6.0 07/25/08 | 2009-04-08 |
Neurospora crassa | 9838 | FGI v3(assembly7) 08/30/06 | 2009-04-08 |
Pichia stipitis | 6383 | NCBI NC_009042-NC_009068 1/2/08 | 2009-04-08 |
Saccharomyces cerevisiae | 5861 | SGD 02/20/09 | 2009-04-08 |
Schizosaccharomyces pombe | 5007 | Sanger version 19 2/19/09 | 2009-04-09 |
Yarrowia lipolytica | 6466 | NCBI NC_006067-NC_006072 10/29/08 | 2009-04-09 |
[Vertebrates] |
Anolis carolinensis | 17790 | Ensembl 67 5/1/13 | 2012-07-11 |
Danio rerio | 28538 | Ensembl 67 5/1/12 | 2012-07-11 |
Gallus gallus | 16965 | Ensembl 67 5/1/12 | 2012-07-11 |
Homo sapiens | 28075 | Ensembl 67 5/1/12 | 2012-07-11 |
Monodelphis domestica | 19661 | Ensembl 67 5/1/12 | 2012-07-11 |
Mus musculus | 26794 | Ensembl 67 5/1/12 | 2012-07-11 |
Ornithorhynchus anatinus | 18263 | Ensembl 67 5/1/12 | 2012-07-11 |
Sarcophilus harrisii | 18940 | Ensembl 67 5/1/12 | 2012-07-11 |
Takifugu rubripes | 18809 | Ensembl 67 5/1/12 | 2012-07-11 |
Xenopus tropicalis | 18653 | Ensembl 67 5/1/12 | 2012-07-11 |
[Urochordates & Cephalochordata] |
Branchiostoma floridae | 50817 | JGI 1.0 12/5/06 | 2012-06-06 |
Ciona intestinalis | 14002 | JGI 2.0 3/1/05 | 2012-06-06 |
[Echinoderms] |
Strongylocentrotus purpuratus | 28420 | Ensembl 67 5/1/12 | 2012-06-06 |
[Arthropodes] |
Acyrthosiphon pisum | 36211 | Aphid Base 2.1 | 2012-06-06 |
Aedes aegypti | 16449 | Ensembl 67 5/1/12 | 2012-07-11 |
Anopheles gambiae | 13232 | Ensembl 67 5/1/12 | 2012-07-11 |
Apis mellifera | 10517 | Bee Base 4.5 4/14/11 | 2012-06-06 |
Bombyx mori | 14610 | Ensembl 67 5/1/12 | 2012-06-06 |
Daphnia pulex | 30893 | Ensembl 67 5/1/12 | 2012-06-06 |
Drosophila melanogaster | 16954 | Ensembl 67 5/1/12 | 2012-07-11 |
Ixodes scapularis | 20483 | Ensembl 67 5/1/12 | 2012-06-06 |
Nasonia vitripennis | 19796 | Baylor (HGSC) 12/15/08 | 2012-06-06 |
Pediculus humanus | 10775 | Vector Base U1.2 10/12/08 | 2012-06-06 |
Tetranychus urticae | 17162 | BOGAS 10/23/11 | 2012-06-07 |
Tribolium castaneum | 16588 | Beetle Base 3.0 2/10/09 | 2012-06-06 |
[Nematodes] |
Ascaris suum | 18444 | Wormbase 2 3/12/12 | 2012-06-06 |
Caenorhabditis elegans | 24151 | Ensembl 67 5/1/12 | 2012-07-11 |
[Annelida] |
Capitella teleta | 32415 | JGI 1.0 8/23/07 | 2012-06-06 |
Helobdella robusta | 23432 | JGI 1.0 9/20/07 | 2012-06-06 |
[Platyhelminthes] |
Schistosoma mansoni | 12033 | Ensembl 67 5/1/12 | 2012-07-11 |
[Mollusca] |
Lottia gigantea | 23851 | JGI 1.0 7/24/07 | 2012-06-06 |
[Cnidaria] |
Hydra magnipapillata | 14148 | KEGG Genome (refseq) 16 5/9/12 | 2012-06-06 |
Nematostella vectensis | 27273 | JGI 1.0 4/13/09 | 2012-06-13 |
[Porifera] |
Amphimedon queenslandica | 29093 | Ensembl 67 5/1/12 | 2012-06-06 |
[Placozoa] |
Trichoplax adhaerens | 11520 | JGI 1.0 4/13/09 | 2012-06-06 |
[Choanoflagellates] |
Monosiga brevicollis | 9196 | JGI 1.0 7/1/07 | 2012-06-06 |
[Amoebozoa] |
Dictyostelium discoideum | 12308 | Dictybase 5/5/12 | 2012-06-06 |
Dictyostelium purpureum | 12410 | JGI 1.0 8/18/08 | 2012-06-06 |
Entsmoeba histolytica | 8306 | Amoeba DB 10/27/11 | 2012-06-06 |
Polysphondylium pallidum | 12295 | Dictybase 5/5/12 | 2012-06-06 |
[Alveolates] |
Paramecium tetraurelia | 39445 | Paramecium DB 5/1/12 | 2012-06-06 |
Plasmodium falciparum | 5521 | Plasmo DB 8.2 1/10/12 | 2012-06-06 |
Tetrahymena thermophila | 24689 | Ciliate DB 10/23/08 | 2012-06-06 |
Theileria annulata | 3795 | Gene DB 7/15/05 | 2012-06-06 |
Toxoplasma gondii | 8102 | Toxo DB 7.2 10/27/11 | 2012-06-06 |
[Stramenopiles (Heterokonts)] |
Aureococcus anophagefferens | 11501 | JGI 1.0 9/27/07 | 2012-06-06 |
Fragilariopsis cylindrus | 27137 | JGI 1.0 10/1/08 | 2012-06-06 |
Phaeodactylum tricornutum | 10025 | JGI 2.0 4/1/07 | 2012-06-13 |
Phytophthora capsici | 17414 | JGI 1.0 6/26/08 | 2012-06-06 |
Phytophthora ramorum | 15743 | JGI 1.1 8/1/04 | 2012-06-06 |
Phytophthora sojae | 18973 | JGI 1.1 8/2/04 | 2012-06-06 |
Pseudo-nitzschia multiseries | 19703 | JGI 1.0 10/1/11 | 2012-06-06 |
Thalassiosira pseudonana | 11390 | JGI 3.0 5/1/07 | 2012-06-13 |
[Haptophyte] |
Emiliania huxleyi CCMP1516 | 33338 | JGI 1.0 4/25/08 | 2012-06-06 |
[Excavates] |
Giardia intestinalis | 5871 | giardiadb.org 6/30/2012 | 2012-09-10 |
Leishmania major | 8411 | tritrypdb.org 6/30/2012 | 2012-09-10 |
Naegleria gruberi | 15753 | JGI 1.0 10/23/06 | 2012-06-06 |
Trichomonas vaginalis | 59508 | trichdb.org 6/30/2012 | 2012-09-10 |
Trypanosoma brucei | 9891 | TriTryp DB 4.0 10/27/11 | 2012-06-06 |